Query 046681
Match_columns 438
No_of_seqs 286 out of 1637
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx5_A Acriflavine resistance 33.4 4.4E+02 0.015 29.2 13.9 21 164-184 1004-1024(1057)
2 3ne5_A Cation efflux system pr 33.3 2.4E+02 0.0082 31.3 11.7 21 164-184 1020-1040(1054)
3 3l39_A Putative PHOU-like phos 24.4 3.7E+02 0.013 23.8 12.0 120 257-395 87-217 (227)
4 2i0m_A Phosphate transport sys 18.6 4.2E+02 0.014 22.7 8.4 28 372-399 179-206 (216)
5 1t72_A Phosphate transport sys 12.5 4E+02 0.014 23.1 6.5 30 372-401 183-212 (227)
6 2y6x_A PSB27, photosystem II 1 12.5 4.6E+02 0.016 21.0 6.0 42 264-312 64-105 (113)
7 4dx5_A Acriflavine resistance 11.8 1.4E+03 0.048 25.0 14.5 20 165-184 472-491 (1057)
8 2l7a_A Talin-1; vinculin, bund 11.7 4.5E+02 0.015 21.5 6.0 22 297-318 70-91 (131)
9 2kmf_A Photosystem II 11 kDa p 10.8 4.5E+02 0.015 21.1 5.4 42 264-312 68-109 (115)
10 4ehp_B Catenin alpha-1; adhere 10.7 4E+02 0.014 21.3 5.1 29 297-325 56-84 (111)
No 1
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=33.38 E-value=4.4e+02 Score=29.22 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhcccc
Q 046681 164 VVTIAIGSCTSLLVCILICPV 184 (438)
Q Consensus 164 ~~~i~iG~~ia~~vs~~i~P~ 184 (438)
-..+++|++++++++.++.|.
T Consensus 1004 g~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1004 GTGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888873
No 2
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=33.26 E-value=2.4e+02 Score=31.33 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhhhcccc
Q 046681 164 VVTIAIGSCTSLLVCILICPV 184 (438)
Q Consensus 164 ~~~i~iG~~ia~~vs~~i~P~ 184 (438)
-..+++|++++++++.++.|.
T Consensus 1020 ~~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1020 AAPMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp THHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 456778888899999888884
No 3
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=24.41 E-value=3.7e+02 Score=23.80 Aligned_cols=120 Identities=10% Similarity=0.083 Sum_probs=59.4
Q ss_pred CccCCcHHHHHHHHHHHHHHHHHHHHHHhchhc-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 046681 257 LKFRHPWKLYLKAGTLTRDCAYKIEALSSHLNS-DYPTPWPEEIQSKIQESYTMISSETGKALKELASAIKTMARSSSVN 335 (438)
Q Consensus 257 ~~~~~p~~~y~~i~~~~r~~~~~i~aL~~~l~~-~~~~p~~~~l~~~l~~~~~~l~~e~~~~L~~La~sl~~~~~~~~~~ 335 (438)
|-.+++.+....+...+..+++.++.....+.- ....+ ++++ .+++..+.+..+.+..++........
T Consensus 87 fitP~dReDI~~L~~~lDdI~D~ie~~a~~l~l~~~~~~-~~~~--------~~l~~~i~~~~~~l~~ai~~L~~~~~-- 155 (227)
T 3l39_A 87 FITPFDREDIHDLASCMDDVIDGINSSAKRIVIYNPRPI-SESG--------KELSRLIHEEAINIGKAMDELETFRK-- 155 (227)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSC-CHHH--------HHHHHHHHHHHHHHHHHHTTTTTTTT--
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 334567777888888888888888877753332 22222 1333 22333333455555556654432210
Q ss_pred cccccHHHHHHHHHHHhhc----------ccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046681 336 THIANSKAAAETLKSLFKI----------SVLEEDTDLLEIVPAATVASLLMDVVTCTEKIAACVNDLAS 395 (438)
Q Consensus 336 ~~~~~~~~a~~~L~~~l~~----------~~~~~~~~~~e~~~~~~~~sll~~~v~~l~~l~~~v~~L~~ 395 (438)
......+...+++..=.. .....+.+.++. -.+.+++..|+.+++..+..+.
T Consensus 156 -~~~~i~~~~~eI~~lE~eaD~l~~~~~~~Lf~~e~d~i~~-------i~~keI~~~Le~~aD~~Edva~ 217 (227)
T 3l39_A 156 -NPKPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIEL-------IKIKEIMHELEKTTDAAEHVGK 217 (227)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 112233333333332111 000011122222 2345888888888888877764
No 4
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=18.63 E-value=4.2e+02 Score=22.71 Aligned_cols=28 Identities=7% Similarity=0.255 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 046681 372 VASLLMDVVTCTEKIAACVNDLASQANF 399 (438)
Q Consensus 372 ~~sll~~~v~~l~~l~~~v~~L~~~~~f 399 (438)
.+..++.++..+||+.+.....++..-|
T Consensus 179 ~~~~~~~i~~~lERI~Dha~nIae~v~~ 206 (216)
T 2i0m_A 179 NGTQYLYIIGHLERFADYIANICERLVY 206 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999998888876554
No 5
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=12.53 E-value=4e+02 Score=23.07 Aligned_cols=30 Identities=30% Similarity=0.199 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 046681 372 VASLLMDVVTCTEKIAACVNDLASQANFNS 401 (438)
Q Consensus 372 ~~sll~~~v~~l~~l~~~v~~L~~~~~f~~ 401 (438)
.+..++.++..+||+.+.....++..-|..
T Consensus 183 ~~~~~~~i~~~lERIgDha~nIae~v~~~~ 212 (227)
T 1t72_A 183 RAMHLSFVARHYERIADHAENVAEAAIYLS 212 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888999999988888887776643
No 6
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=12.50 E-value=4.6e+02 Score=20.96 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHHHHHHHH
Q 046681 264 KLYLKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQESYTMISS 312 (438)
Q Consensus 264 ~~y~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~~~~l~~ 312 (438)
..|..|.+.+ .+|+++-.+....|.|+.++.++..++++...
T Consensus 64 ~Sfttm~tAl-------NaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~ 105 (113)
T 2y6x_A 64 SSFMTMQTAL-------NSLAGHYSSYPNRPLPEKLKARLEQEFKQVEL 105 (113)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHH-------HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4565555544 45555445444667778999888887776554
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=11.84 E-value=1.4e+03 Score=24.99 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhhcccc
Q 046681 165 VTIAIGSCTSLLVCILICPV 184 (438)
Q Consensus 165 ~~i~iG~~ia~~vs~~i~P~ 184 (438)
..+++|++++++++.++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 472 ITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888877774
No 8
>2l7a_A Talin-1; vinculin, bundle, focal adhesion, integrin, cell ADHE; NMR {Mus musculus}
Probab=11.75 E-value=4.5e+02 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046681 297 EEIQSKIQESYTMISSETGKAL 318 (438)
Q Consensus 297 ~~l~~~l~~~~~~l~~e~~~~L 318 (438)
+++++++.+....+...+....
T Consensus 70 p~~~~rLl~AAk~La~At~~MV 91 (131)
T 2l7a_A 70 LENSRKLLSAAKILADATAKMV 91 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766333333
No 9
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=10.78 E-value=4.5e+02 Score=21.10 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHHHHHHHH
Q 046681 264 KLYLKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQESYTMISS 312 (438)
Q Consensus 264 ~~y~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~~~~l~~ 312 (438)
..|..|.++++.++.+- .+....|.|+.++.++..++++...
T Consensus 68 ~Sf~tm~tAlNaLAGHY-------~s~g~~PlPek~k~Rl~~el~~AE~ 109 (115)
T 2kmf_A 68 KSFTTMQTALNSLAGYY-------TSYGARPIPEKLKKRLQLEFTQAER 109 (115)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH-------hhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 56766666655444443 3333556668899888887776554
No 10
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=10.67 E-value=4e+02 Score=21.26 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 297 EEIQSKIQESYTMISSETGKALKELASAI 325 (438)
Q Consensus 297 ~~l~~~l~~~~~~l~~e~~~~L~~La~sl 325 (438)
++-+.++-..|+.+..+....|.+.-.+.
T Consensus 56 ~e~RerIv~eCnavRqaLQdLlseym~~~ 84 (111)
T 4ehp_B 56 DDRRERIVAECNAVRQALQDLLSEYMGNA 84 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788888999999986666666555543
Done!