Query 046681
Match_columns 438
No_of_seqs 286 out of 1637
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 05:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046681.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046681hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcta1 a.7.12.1 (A:9-107) Hyp 30.8 81 0.0059 22.2 7.3 24 374-397 71-94 (99)
2 d1sumb_ a.7.12.1 (B:) PhoU hom 18.7 2.2E+02 0.016 22.8 8.9 29 372-400 178-206 (225)
3 d1xwma_ a.7.12.1 (A:) Phosphat 17.7 2.2E+02 0.016 22.3 10.3 27 373-399 177-203 (212)
4 d1sj8a2 a.216.1.1 (A:658-782) 13.7 2.3E+02 0.017 20.7 9.0 79 267-352 43-121 (125)
5 d1xrda1 f.3.1.1 (A:1-52) Light 11.8 68 0.0049 20.4 2.4 21 11-33 3-23 (52)
6 d1t72a_ a.7.12.1 (A:) Phosphat 11.1 3.4E+02 0.025 21.2 8.2 25 373-397 184-208 (215)
7 d1tqga_ a.24.10.3 (A:) Chemota 11.1 2.4E+02 0.018 19.5 6.3 20 372-391 85-104 (105)
8 d2b0ha1 a.24.9.2 (A:1838-1973) 10.5 3E+02 0.022 20.2 6.8 25 297-321 73-97 (136)
9 d1ppjc2 f.21.1.2 (C:15-260) Mi 8.5 3.3E+02 0.024 22.6 6.7 54 19-76 95-150 (246)
10 d1q90b_ f.21.1.2 (B:) Cytochro 8.4 2.4E+02 0.018 23.0 5.5 49 29-77 117-167 (212)
No 1
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=30.84 E-value=81 Score=22.19 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 046681 374 SLLMDVVTCTEKIAACVNDLASQA 397 (438)
Q Consensus 374 sll~~~v~~l~~l~~~v~~L~~~~ 397 (438)
..++.++..+||+.|...++++..
T Consensus 71 ~~~~~i~~~lERIgDha~nIae~v 94 (99)
T d1vcta1 71 ITILQIANAIEDISNAAGDLAKMV 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999988754
No 2
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]}
Probab=18.68 E-value=2.2e+02 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 046681 372 VASLLMDVVTCTEKIAACVNDLASQANFN 400 (438)
Q Consensus 372 ~~sll~~~v~~l~~l~~~v~~L~~~~~f~ 400 (438)
.+..++.+++.+||+.+-....++..-|-
T Consensus 178 ~~~~~~~i~~~lERIgDh~~nIaE~v~y~ 206 (225)
T d1sumb_ 178 RALLLLEIAGNIEIIADYATNIVEVSVYM 206 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999988776554
No 3
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.68 E-value=2.2e+02 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 046681 373 ASLLMDVVTCTEKIAACVNDLASQANF 399 (438)
Q Consensus 373 ~sll~~~v~~l~~l~~~v~~L~~~~~f 399 (438)
+..++.+++.+||+.+-....++..-|
T Consensus 177 ~~~~~~i~r~LERIgDh~~nIae~vif 203 (212)
T d1xwma_ 177 MNVLALVARYIERTADHATNIAEHLVY 203 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567889999999999888876544
No 4
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.73 E-value=2.3e+02 Score=20.65 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccccHHHHHH
Q 046681 267 LKAGTLTRDCAYKIEALSSHLNSDYPTPWPEEIQSKIQESYTMISSETGKALKELASAIKTMARSSSVNTHIANSKAAAE 346 (438)
Q Consensus 267 ~~i~~~~r~~~~~i~aL~~~l~~~~~~p~~~~l~~~l~~~~~~l~~e~~~~L~~La~sl~~~~~~~~~~~~~~~~~~a~~ 346 (438)
++++...+++......|..+-......|..+..+..+.+....++. .+..|-.+.+...+- +....++.++.+
T Consensus 43 ~~Li~aa~~v~~~t~qLv~~aK~~a~~~~d~~~q~~L~~aak~V~~----a~~~Lv~a~~~a~~~---~~~~~~l~~aa~ 115 (125)
T d1sj8a2 43 TQVIAAATQCALSTSQLVACTKVVAPTISSPVCQEQLVEAGRLVAK----AVEGCVSASQAATED---GQLLRGVGAAAT 115 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHH----HHHHHHHHHHHTCCS---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHhhCcC---cHHHHHHHHHHH
Confidence 4566666777776666655433322333224455555554444444 777777776643321 223445555555
Q ss_pred HHHHHh
Q 046681 347 TLKSLF 352 (438)
Q Consensus 347 ~L~~~l 352 (438)
.+...+
T Consensus 116 ~v~~~l 121 (125)
T d1sj8a2 116 AVTQAL 121 (125)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=11.80 E-value=68 Score=20.41 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=13.6
Q ss_pred HHHhcCCCCcchHHHHHHHHHHH
Q 046681 11 EAKKLGIDDPRRIIHSFKVGLAI 33 (438)
Q Consensus 11 ~~~~~~~~d~~~~~~alK~~lA~ 33 (438)
++|.+. ||||..-|+-+.+..
T Consensus 3 kiW~~f--DPRr~lva~~~fL~~ 23 (52)
T d1xrda1 3 RIWQLF--DPRQALVGLATFLFV 23 (52)
T ss_dssp GGGGTS--SHHHHHHHHHHHHHH
T ss_pred eeeeEe--cHHHHHHHHHHHHHH
Confidence 556665 999986665555443
No 6
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=11.14 E-value=3.4e+02 Score=21.16 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 046681 373 ASLLMDVVTCTEKIAACVNDLASQA 397 (438)
Q Consensus 373 ~sll~~~v~~l~~l~~~v~~L~~~~ 397 (438)
+..++.+++.+||+.+-....++..
T Consensus 184 ~~~~~~i~r~lERigDh~~nIae~v 208 (215)
T d1t72a_ 184 AMHLSFVARHYERIADHAENVAEAA 208 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678889999999888887653
No 7
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=11.08 E-value=2.4e+02 Score=19.48 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046681 372 VASLLMDVVTCTEKIAACVN 391 (438)
Q Consensus 372 ~~sll~~~v~~l~~l~~~v~ 391 (438)
...++.+.+..++.+++.++
T Consensus 85 ~~~~l~~~~d~l~~~l~~l~ 104 (105)
T d1tqga_ 85 LLDKIFAGVDMITRMVDKIV 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44566777777887777663
No 8
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.51 E-value=3e+02 Score=20.17 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046681 297 EEIQSKIQESYTMISSETGKALKEL 321 (438)
Q Consensus 297 ~~l~~~l~~~~~~l~~e~~~~L~~L 321 (438)
++.+..+.+....++..+.+.+...
T Consensus 73 ~~~q~~ll~~ak~v~~s~~~Lv~aa 97 (136)
T d2b0ha1 73 EEIGAHIKHRVQELGHGCSALVTKA 97 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666444444433
No 9
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.50 E-value=3.3e+02 Score=22.57 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=31.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcc--cChhHHHHHHH
Q 046681 19 DPRRIIHSFKVGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFE--FSVGATLGKGL 76 (438)
Q Consensus 19 d~~~~~~alK~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~--ps~G~t~~k~~ 76 (438)
.||.+.-++=..+.+...+..+|. +.++|.++|+.....=.+. |.+|..+...+
T Consensus 95 ~~~~w~~G~~l~~l~m~~af~GY~----Lpw~qms~wa~~V~t~l~~~iP~iG~~l~~wi 150 (246)
T d1ppjc2 95 FLETWNIGVILLLTVMATAFMGYV----LPWGQMSFWGATVITNLLSAIPYIGTNLVEWI 150 (246)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH----TTCBHHHHHHHHHHHGGGGGSTTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHeecc----CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555555444444444444554 3456789998755444443 88888775543
No 10
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.42 E-value=2.4e+02 Score=22.99 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhCCCCcchHHHHHHHHhcc--cChhHHHHHHHH
Q 046681 29 VGLAITLVSLFYYFKPLYEGFGVSAMWAVLTVVVVFE--FSVGATLGKGLN 77 (438)
Q Consensus 29 ~~lA~~l~~l~~~~~~~~~~~~~~~~Wa~lTvvvv~~--ps~G~t~~k~~~ 77 (438)
+|+.+.+.++..-+..-.+.+++.+||+.....-.++ |-+|..+...+.
T Consensus 117 ~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~iP~iG~~l~~~l~ 167 (212)
T d1q90b_ 117 TGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPGVGGFIVELLR 167 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGSTTHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHhhccHHHHHhcC
Done!