Query 046682
Match_columns 236
No_of_seqs 197 out of 1525
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.5 1.8E-14 4E-19 137.4 1.9 217 1-225 661-883 (889)
2 PLN03210 Resistant to P. syrin 99.3 7.7E-12 1.7E-16 123.8 10.5 97 23-129 623-720 (1153)
3 PLN03210 Resistant to P. syrin 99.3 1.3E-11 2.8E-16 122.2 8.8 171 4-192 630-843 (1153)
4 PLN00113 leucine-rich repeat r 98.6 1.2E-07 2.6E-12 92.8 6.9 47 147-193 305-351 (968)
5 PLN00113 leucine-rich repeat r 98.5 2.3E-07 5E-12 90.9 6.9 46 147-192 281-326 (968)
6 KOG2120 SCF ubiquitin ligase, 98.1 4.5E-07 9.8E-12 75.8 -1.6 134 34-186 234-375 (419)
7 PRK15386 type III secretion pr 97.9 5E-05 1.1E-09 67.0 8.2 128 34-184 52-187 (426)
8 PRK15386 type III secretion pr 97.8 7E-05 1.5E-09 66.1 7.8 158 4-188 48-214 (426)
9 PF14580 LRR_9: Leucine-rich r 97.7 6.9E-05 1.5E-09 58.8 4.7 103 34-161 19-124 (175)
10 PF13855 LRR_8: Leucine rich r 97.6 0.00015 3.2E-09 46.5 5.1 37 147-184 22-59 (61)
11 cd00116 LRR_RI Leucine-rich re 97.4 3.6E-05 7.8E-10 65.5 0.5 12 57-68 80-91 (319)
12 KOG0617 Ras suppressor protein 97.4 1.6E-05 3.5E-10 61.8 -2.1 146 34-193 33-191 (264)
13 cd00116 LRR_RI Leucine-rich re 97.4 5.5E-05 1.2E-09 64.4 0.8 37 147-184 218-260 (319)
14 PF14580 LRR_9: Leucine-rich r 97.3 0.00018 3.9E-09 56.5 3.3 134 4-161 15-151 (175)
15 PF13855 LRR_8: Leucine rich r 97.3 0.00045 9.8E-09 44.2 4.6 39 35-73 2-40 (61)
16 PRK15370 E3 ubiquitin-protein 97.3 0.00031 6.7E-09 67.0 4.9 40 150-193 346-385 (754)
17 KOG3665 ZYG-1-like serine/thre 97.3 6.8E-05 1.5E-09 70.8 0.3 80 34-123 122-205 (699)
18 PRK15370 E3 ubiquitin-protein 97.3 0.00027 5.9E-09 67.4 4.3 41 149-193 366-406 (754)
19 KOG3665 ZYG-1-like serine/thre 97.1 0.00013 2.8E-09 68.9 0.8 17 55-71 170-186 (699)
20 KOG2120 SCF ubiquitin ligase, 97.1 4.7E-05 1E-09 63.9 -2.3 132 8-161 234-374 (419)
21 KOG0444 Cytoskeletal regulator 97.0 2.7E-05 5.9E-10 71.3 -4.8 79 34-122 173-254 (1255)
22 PRK15387 E3 ubiquitin-protein 97.0 0.0033 7.1E-08 60.2 8.8 31 8-44 242-272 (788)
23 KOG4194 Membrane glycoprotein 97.0 0.00013 2.9E-09 66.3 -0.6 121 54-185 289-427 (873)
24 KOG4658 Apoptotic ATPase [Sign 96.8 0.00032 6.8E-09 68.1 0.4 21 147-167 767-787 (889)
25 PRK15387 E3 ubiquitin-protein 96.8 0.0053 1.1E-07 58.8 8.1 30 91-123 283-312 (788)
26 KOG1259 Nischarin, modulator o 96.7 0.00022 4.8E-09 60.1 -1.5 127 8-161 284-410 (490)
27 KOG3207 Beta-tubulin folding c 96.7 0.00036 7.8E-09 61.3 -0.6 82 34-123 146-232 (505)
28 KOG4194 Membrane glycoprotein 96.5 0.0024 5.1E-08 58.5 3.4 115 3-121 97-229 (873)
29 KOG4341 F-box protein containi 96.5 0.00038 8.2E-09 60.9 -1.7 64 147-210 369-440 (483)
30 KOG3864 Uncharacterized conser 96.4 0.00048 1.1E-08 54.7 -1.2 67 87-165 122-191 (221)
31 PF12799 LRR_4: Leucine Rich r 96.2 0.0061 1.3E-07 36.4 3.2 32 91-123 2-34 (44)
32 KOG4341 F-box protein containi 96.2 0.00015 3.2E-09 63.4 -5.6 164 34-204 138-325 (483)
33 KOG1947 Leucine rich repeat pr 96.0 0.00037 7.9E-09 62.6 -4.3 87 34-127 214-309 (482)
34 KOG0444 Cytoskeletal regulator 96.0 0.0019 4.1E-08 59.7 0.3 46 148-195 243-288 (1255)
35 PF12799 LRR_4: Leucine Rich r 96.0 0.011 2.3E-07 35.3 3.5 38 59-106 2-39 (44)
36 KOG1259 Nischarin, modulator o 96.0 0.0017 3.6E-08 55.0 -0.1 103 86-192 303-416 (490)
37 KOG0618 Serine/threonine phosp 95.8 0.0019 4.2E-08 61.6 -0.5 106 34-162 383-488 (1081)
38 KOG3207 Beta-tubulin folding c 95.8 0.0016 3.5E-08 57.3 -1.0 82 33-124 120-208 (505)
39 KOG0617 Ras suppressor protein 95.4 0.0029 6.2E-08 49.5 -0.8 108 52-183 27-136 (264)
40 PF13504 LRR_7: Leucine rich r 94.9 0.02 4.4E-07 26.8 1.6 17 174-191 1-17 (17)
41 KOG0618 Serine/threonine phosp 94.2 0.0048 1E-07 59.0 -2.7 41 145-186 447-488 (1081)
42 PLN03150 hypothetical protein; 93.9 0.12 2.7E-06 48.7 5.8 92 86-191 438-532 (623)
43 KOG1947 Leucine rich repeat pr 93.4 0.016 3.4E-07 52.0 -1.0 114 34-163 188-308 (482)
44 KOG2123 Uncharacterized conser 93.3 0.004 8.6E-08 52.2 -4.5 14 148-161 86-99 (388)
45 KOG0472 Leucine-rich repeat pr 92.7 0.028 6.1E-07 49.4 -0.4 106 4-123 431-538 (565)
46 KOG2123 Uncharacterized conser 92.2 0.0034 7.4E-08 52.5 -6.3 76 34-122 19-97 (388)
47 COG4886 Leucine-rich repeat (L 92.1 0.15 3.1E-06 45.0 3.4 136 35-183 141-286 (394)
48 PLN03150 hypothetical protein; 92.0 0.27 5.9E-06 46.3 5.2 88 92-193 420-509 (623)
49 KOG3864 Uncharacterized conser 91.9 0.039 8.4E-07 44.1 -0.5 65 34-106 125-192 (221)
50 KOG0472 Leucine-rich repeat pr 91.4 0.07 1.5E-06 47.1 0.5 40 145-185 500-539 (565)
51 COG4886 Leucine-rich repeat (L 91.1 0.082 1.8E-06 46.6 0.7 144 34-192 116-272 (394)
52 KOG2982 Uncharacterized conser 91.0 0.072 1.6E-06 45.3 0.2 23 171-193 246-268 (418)
53 KOG2739 Leucine-rich acidic nu 90.2 0.16 3.5E-06 42.1 1.6 81 35-126 44-129 (260)
54 KOG1644 U2-associated snRNP A' 88.0 0.93 2E-05 36.5 4.4 60 54-121 60-121 (233)
55 smart00367 LRR_CC Leucine-rich 87.2 0.4 8.6E-06 24.8 1.3 17 173-189 1-17 (26)
56 KOG0531 Protein phosphatase 1, 87.1 0.36 7.7E-06 43.1 1.8 76 34-122 95-171 (414)
57 KOG2739 Leucine-rich acidic nu 86.4 0.36 7.7E-06 40.0 1.3 136 35-192 19-161 (260)
58 PF00560 LRR_1: Leucine Rich R 86.1 0.31 6.6E-06 24.2 0.5 18 175-193 1-18 (22)
59 KOG0531 Protein phosphatase 1, 85.0 0.33 7.1E-06 43.3 0.5 103 4-122 91-195 (414)
60 KOG1859 Leucine-rich repeat pr 81.1 0.12 2.5E-06 49.0 -4.0 80 30-121 183-262 (1096)
61 PF13306 LRR_5: Leucine rich r 79.0 9.1 0.0002 27.4 6.3 9 90-98 35-43 (129)
62 KOG1644 U2-associated snRNP A' 76.7 3.7 8.1E-05 33.1 3.7 88 25-122 56-149 (233)
63 KOG0532 Leucine-rich repeat (L 76.7 0.41 8.8E-06 44.2 -1.8 99 36-160 145-244 (722)
64 KOG2982 Uncharacterized conser 72.7 1.6 3.4E-05 37.4 0.8 36 150-185 173-210 (418)
65 KOG4237 Extracellular matrix p 59.4 2.8 6.1E-05 37.2 -0.2 32 88-120 320-353 (498)
66 smart00370 LRR Leucine-rich re 58.8 7.1 0.00015 19.8 1.4 19 174-193 2-20 (26)
67 smart00369 LRR_TYP Leucine-ric 58.8 7.1 0.00015 19.8 1.4 19 174-193 2-20 (26)
68 KOG4237 Extracellular matrix p 55.3 1.9 4E-05 38.3 -2.0 67 32-106 65-131 (498)
69 PF13516 LRR_6: Leucine Rich r 52.1 8.5 0.00018 19.1 1.0 12 113-124 2-13 (24)
70 KOG1909 Ran GTPase-activating 48.2 7.1 0.00015 34.0 0.5 117 54-185 181-309 (382)
71 KOG0532 Leucine-rich repeat (L 48.0 4.5 9.7E-05 37.7 -0.8 31 152-183 213-243 (722)
72 KOG1859 Leucine-rich repeat pr 44.7 1.2 2.7E-05 42.4 -4.9 12 5-16 184-195 (1096)
73 PF05725 FNIP: FNIP Repeat; I 31.5 72 0.0016 18.4 2.9 9 33-41 11-19 (44)
74 smart00365 LRR_SD22 Leucine-ri 23.1 65 0.0014 16.6 1.4 14 58-71 2-15 (26)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.45 E-value=1.8e-14 Score=137.39 Aligned_cols=217 Identities=32% Similarity=0.461 Sum_probs=166.5
Q ss_pred CcccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccc
Q 046682 1 MKELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTE 79 (236)
Q Consensus 1 l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~ 79 (236)
++||+.|++|+.++++..+...++.+..+.++....+.+.+.+|.. ....+++..+.+|+.|.|.+| ..+ +.+++..
T Consensus 661 l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~ 738 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISE-IVIEWEE 738 (889)
T ss_pred HHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCch-hhccccc
Confidence 4688999999999998877766778888888877888888766533 222367889999999999999 443 3332221
Q ss_pred cccccCcc-CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEE-ec
Q 046682 80 EVKKLFQS-GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESL-TI 157 (236)
Q Consensus 80 ~~~~~~~~-~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L-~l 157 (236)
. .... .|+++..+.+.+|..++.++|....|+|++|.+.+|..++++++......... .....|+++..+ .+
T Consensus 739 ~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~---~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 739 S---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK---ELILPFNKLEGLRML 812 (889)
T ss_pred c---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc---cEEecccccccceee
Confidence 1 1112 37889999999999999999999999999999999999999986544332110 124577888888 68
Q ss_pred cccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCC-C--cceEEechHHHHhhccCCchhhhhhh
Q 046682 158 KWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVK-E--RRVVIEGEKEWWEELQWEDQATQNAF 225 (236)
Q Consensus 158 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~-~--~l~~~~~~~~w~~~l~w~~~~~~~~~ 225 (236)
.+.++++.++.....++.|+.+.|..||+++.+|....... . ...+.-.+.+|-+.++|++++++..+
T Consensus 813 ~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 89999999988888899999999999999999999866543 1 22333455678899999999998877
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.31 E-value=7.7e-12 Score=123.85 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=60.2
Q ss_pred HHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCC
Q 046682 23 VQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCK 101 (236)
Q Consensus 23 l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~ 101 (236)
++.+.....-.++|+.|++++|..... ++.+..+++|+.|.+.+| .+..++ .....+++|+.|++.+|.
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~-ip~ls~l~~Le~L~L~~c~~L~~lp---------~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKE-IPDLSMATNLETLKLSDCSSLVELP---------SSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCc-CCccccCCcccEEEecCCCCccccc---------hhhhccCCCCEEeCCCCC
Confidence 334433333346777777777654211 145666777777787777 666552 234556777777777777
Q ss_pred CCCcchhhhcccCccEEeEeccccccee
Q 046682 102 KMKDLTWLVFVQILKQLRIVFCTEMEEI 129 (236)
Q Consensus 102 ~l~~l~~l~~lp~L~~L~i~~C~~L~~i 129 (236)
.++.++....+++|+.|.+++|..++.+
T Consensus 693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 693 NLEILPTGINLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred CcCccCCcCCCCCCCEEeCCCCCCcccc
Confidence 7777665446777777777777665544
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.26 E-value=1.3e-11 Score=122.24 Aligned_cols=171 Identities=20% Similarity=0.308 Sum_probs=102.3
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeeccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVK 82 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~ 82 (236)
.+.+.+|+.|+++.+. .++.+.... ..++|+.|.+.+|........++.++++|+.|.+++| +++.++.
T Consensus 630 ~~~l~~Lk~L~Ls~~~--~l~~ip~ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~------- 699 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSK--NLKEIPDLS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT------- 699 (1153)
T ss_pred cccCCCCCEEECCCCC--CcCcCCccc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-------
Confidence 4567778887776432 233332222 2478999999999763222245788899999999999 8877632
Q ss_pred ccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc-----------------------------
Q 046682 83 KLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD----------------------------- 133 (236)
Q Consensus 83 ~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~----------------------------- 133 (236)
...+++|+.|.+++|..++.++.. .++|+.|+++++. ++.++...
T Consensus 700 ---~i~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 700 ---GINLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred ---cCCCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhh
Confidence 124677777777777665544321 2334444443322 11111000
Q ss_pred -------------ccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 134 -------------KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 134 -------------~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
......+.. ..+..+++|+.|+|.+|.+++.++... .+++|+.|.+++|.+++.+|.
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 000000000 234567888888888888888887644 578888888888888877764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.55 E-value=1.2e-07 Score=92.81 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=27.6
Q ss_pred cccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 147 NFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
..+++|+.|++.++.-...++.....+++|+.|.+.+|.--..+|..
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 44566666666655433333333445778888888887654456643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.49 E-value=2.3e-07 Score=90.89 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=25.0
Q ss_pred cccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 147 NFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
..+++|+.|+++++.-...++.....+++|+.|.+.++.-...+|.
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 4456666666665542223333334566777777776654444443
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4.5e-07 Score=75.77 Aligned_cols=134 Identities=18% Similarity=0.124 Sum_probs=89.9
Q ss_pred ccceEEEEeccCCCCcccc--chhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCc---ch
Q 046682 34 SITQFVLVYHCKSAPFNLL--HLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD---LT 107 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~--~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~---l~ 107 (236)
.+|+.|+|+.|.|....-. -+.+++.|.+|++++| -..+.+- . .-...-++|+.|+|+||.+--. +.
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-v------~V~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT-V------AVAHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-H------HHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence 5788999999987322111 1467889999999999 3332210 0 0001135789999999965332 22
Q ss_pred h-hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccc-cCCCCCCCCCccEEeEeCCC
Q 046682 108 W-LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKS-VYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 108 ~-l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~-i~~~~~~~p~L~~L~i~~C~ 185 (236)
. ....|+|.+|++++|..++.-.. ..+..|+.|++|.++.|..+-. .-......|+|.+|+|.+|-
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~------------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHHHhCCceeeeccccccccCchHH------------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 2 34789999999999988864211 3456899999999999976532 11134568999999999984
Q ss_pred C
Q 046682 186 Q 186 (236)
Q Consensus 186 ~ 186 (236)
.
T Consensus 375 s 375 (419)
T KOG2120|consen 375 S 375 (419)
T ss_pred C
Confidence 3
No 7
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=5e-05 Score=67.02 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=66.7
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFV 112 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~l 112 (236)
..++.|.|++|.=..+ +.++ .+|++|.+++| +++.++- ...++|+.|.|.+|.++..+ .
T Consensus 52 ~~l~~L~Is~c~L~sL--P~LP--~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sL-----P 111 (426)
T PRK15386 52 RASGRLYIKDCDIESL--PVLP--NELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGL-----P 111 (426)
T ss_pred cCCCEEEeCCCCCccc--CCCC--CCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCccccccc-----c
Confidence 5677888888832222 2222 46888888888 7765421 11357888888888766554 2
Q ss_pred cCccEEeEec--ccccceeccccccccccc---cccccc-ccc-CcccEEeccccccccccCCCCCCCCCccEEeEeCC
Q 046682 113 QILKQLRIVF--CTEMEEIISVDKLRDISE---IIGSEH-NFF-AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGC 184 (236)
Q Consensus 113 p~L~~L~i~~--C~~L~~i~~~~~~~~~~~---~~~~~~-~~~-p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C 184 (236)
++|++|.|.+ |..+..++.......... ...... ..+ ++|++|.+.+|..+. ++.. -.++|+.|.+..+
T Consensus 112 ~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence 4577777653 223333332111000000 000000 012 467777777776543 2211 1247777777664
No 8
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=7e-05 Score=66.07 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=86.1
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccc---
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTE--- 79 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~--- 79 (236)
+..+.+++.|+|+.+ .+..+ +.++.+|+.|.+.+|.........++ ++|++|.|++| .+..++..-..
T Consensus 48 ~~~~~~l~~L~Is~c---~L~sL---P~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L 119 (426)
T PRK15386 48 IEEARASGRLYIKDC---DIESL---PVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEI 119 (426)
T ss_pred HHHhcCCCEEEeCCC---CCccc---CCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEe
Confidence 445678888888855 34444 34667999999999977322112233 58999999999 77655211000
Q ss_pred -cccccCccCC-CCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEe
Q 046682 80 -EVKKLFQSGF-RSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLT 156 (236)
Q Consensus 80 -~~~~~~~~~l-~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~ 156 (236)
.........+ ++|+.|.+.+........ .....++|++|.|.+|..+. ++ .. -.++|+.|+
T Consensus 120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP-------------~~--LP~SLk~L~ 183 (426)
T PRK15386 120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LP-------------EK--LPESLQSIT 183 (426)
T ss_pred CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cc-------------cc--ccccCcEEE
Confidence 0000111222 345555553321111000 00123579999999887552 11 01 225899999
Q ss_pred ccccc--cccccCCCCCCCCCccEEeEeCCCCCC
Q 046682 157 IKWGR--NLKSVYPNPLPLPKLKKIQVRGCPQLK 188 (236)
Q Consensus 157 l~~~~--~L~~i~~~~~~~p~L~~L~i~~C~~L~ 188 (236)
+.... .++ +.....+ +++ .|.+.+|-++.
T Consensus 184 ls~n~~~sLe-I~~~sLP-~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 184 LHIEQKTTWN-ISFEGFP-DGL-DIDLQNSVLLS 214 (426)
T ss_pred eccccccccc-Ccccccc-ccc-EechhhhcccC
Confidence 97532 222 2222222 466 89999986654
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.66 E-value=6.9e-05 Score=58.82 Aligned_cols=103 Identities=13% Similarity=0.193 Sum_probs=33.0
Q ss_pred ccceEEEEeccCCCCccccchh-hcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hh-h
Q 046682 34 SITQFVLVYHCKSAPFNLLHLA-YMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WL-V 110 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~-~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l-~ 110 (236)
..++.|++.++.-..+ ..+. .+.+|+.|++++|.++.+. ....+++|+.|++++- +++++. .+ .
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~----------~l~~L~~L~~L~L~~N-~I~~i~~~l~~ 85 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE----------GLPGLPRLKTLDLSNN-RISSISEGLDK 85 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T----------T----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc----------CccChhhhhhcccCCC-CCCccccchHH
Confidence 3677888888754333 4454 4678888888888555441 2345788888888654 677764 23 3
Q ss_pred cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
.+|+|++|++++- ++.++-. . ..+..+|+|+.|++.+-|
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~---------l--~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNE---------L--EPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp H-TT--EEE-TTS----SCCC---------C--GGGGG-TT--EEE-TT-G
T ss_pred hCCcCCEEECcCC-cCCChHH---------h--HHHHcCCCcceeeccCCc
Confidence 5788888888652 3333211 0 255678888888888766
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.61 E-value=0.00015 Score=46.52 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=17.8
Q ss_pred cccCcccEEeccccccccccCCCC-CCCCCccEEeEeCC
Q 046682 147 NFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGC 184 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C 184 (236)
..+++|++|+|+ ..+++.+..+. ..+++|++|+++++
T Consensus 22 ~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 22 SNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCC
Confidence 345555555555 23344444332 34555555555554
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.44 E-value=3.6e-05 Score=65.53 Aligned_cols=12 Identities=58% Similarity=0.529 Sum_probs=6.0
Q ss_pred cccCCceeecCC
Q 046682 57 MENLQELDLEDI 68 (236)
Q Consensus 57 l~~L~~L~i~~c 68 (236)
+++|+.|++++|
T Consensus 80 ~~~L~~L~l~~~ 91 (319)
T cd00116 80 GCGLQELDLSDN 91 (319)
T ss_pred cCceeEEEccCC
Confidence 445555555544
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.38 E-value=1.6e-05 Score=61.77 Aligned_cols=146 Identities=19% Similarity=0.213 Sum_probs=90.3
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFV 112 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~l 112 (236)
..+..|.++.-.-+.+ .+.+..+.+|+.|.++++.++++ +++++.++.|+.|++. ..++..++ ..+++
T Consensus 33 s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~l---------p~~issl~klr~lnvg-mnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEEL---------PTSISSLPKLRILNVG-MNRLNILPRGFGSF 101 (264)
T ss_pred hhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhhc---------Chhhhhchhhhheecc-hhhhhcCccccCCC
Confidence 5666777765533223 36688899999999998877777 3456778999999873 44565554 46789
Q ss_pred cCccEEeEeccccccee--cccccccc----------ccccccccccccCcccEEeccccccccccCCCCCCCCCccEEe
Q 046682 113 QILKQLRIVFCTEMEEI--ISVDKLRD----------ISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQ 180 (236)
Q Consensus 113 p~L~~L~i~~C~~L~~i--~~~~~~~~----------~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~ 180 (236)
|-|+.|++..- ++.+- ++.-..+. ..++-...++.+.+|+.|.+++- +|-+++...+.+..|++|.
T Consensus 102 p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred chhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHh
Confidence 99999999753 33321 11100000 00111134566677777777652 3444555555677788888
Q ss_pred EeCCCCCCCcCCC
Q 046682 181 VRGCPQLKKLPVN 193 (236)
Q Consensus 181 i~~C~~L~~lp~~ 193 (236)
|.+- .|..+|..
T Consensus 180 iqgn-rl~vlppe 191 (264)
T KOG0617|consen 180 IQGN-RLTVLPPE 191 (264)
T ss_pred cccc-eeeecChh
Confidence 7774 56666654
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.38 E-value=5.5e-05 Score=64.41 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=18.7
Q ss_pred cccCcccEEeccccccccc-----cCCC-CCCCCCccEEeEeCC
Q 046682 147 NFFAQLESLTIKWGRNLKS-----VYPN-PLPLPKLKKIQVRGC 184 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~-----i~~~-~~~~p~L~~L~i~~C 184 (236)
..+++|++|.+++++ +.. +... ....+.|++|.+.+|
T Consensus 218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC
Confidence 345667777776653 221 1100 002356777777776
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.34 E-value=0.00018 Score=56.49 Aligned_cols=134 Identities=14% Similarity=0.079 Sum_probs=46.6
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK 83 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~ 83 (236)
..+..+++.|++.......++.+.. ....|+.|+++++.-..+ ..+..+++|+.|.++++.+.++.. .
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~---~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~------ 82 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGA---TLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-G------ 82 (175)
T ss_dssp ---------------------S--T---T-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-H------
T ss_pred cccccccccccccccccccccchhh---hhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-c------
Confidence 4455667888877655555555432 126899999999965555 667888999999999986665521 0
Q ss_pred cCccCCCCccEEEEecCCCCCc---chhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccc
Q 046682 84 LFQSGFRSLDRVVISSCKKMKD---LTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWG 160 (236)
Q Consensus 84 ~~~~~l~~L~~L~i~~c~~l~~---l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 160 (236)
-...+|+|++|++.+- ++.+ +..+..+|+|+.|++.+.+--. ...+.. ..+..+|+|+.|+-...
T Consensus 83 -l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-----~~~YR~-----~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 83 -LDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE-----KKNYRL-----FVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-----STTHHH-----HHHHH-TT-SEETTEET
T ss_pred -hHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccc-----hhhHHH-----HHHHHcChhheeCCEEc
Confidence 0124899999999764 4544 4566789999999998765221 111110 13346778888776544
Q ss_pred c
Q 046682 161 R 161 (236)
Q Consensus 161 ~ 161 (236)
.
T Consensus 151 ~ 151 (175)
T PF14580_consen 151 T 151 (175)
T ss_dssp T
T ss_pred c
Confidence 3
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.33 E-value=0.00045 Score=44.20 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=16.9
Q ss_pred cceEEEEeccCCCCccccchhhcccCCceeecCCcccee
Q 046682 35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEM 73 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l 73 (236)
+|+.|.+.++.-..++...+..+++|+.|+++++.+..+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i 40 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI 40 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc
Confidence 344555555422222222344455555555554444433
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.29 E-value=0.00031 Score=67.01 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=23.8
Q ss_pred CcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 150 AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 150 p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
++|+.|+++++ +++.++... .++|+.|++++| +|..+|..
T Consensus 346 ~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~ 385 (754)
T PRK15370 346 PELQVLDVSKN-QITVLPETL--PPTITTLDVSRN-ALTNLPEN 385 (754)
T ss_pred CcccEEECCCC-CCCcCChhh--cCCcCEEECCCC-cCCCCCHh
Confidence 46666666654 344444321 357778888777 56677643
No 17
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=6.8e-05 Score=70.82 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=43.7
Q ss_pred ccceEEEEeccCCCCcc-ccch-hhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCcchhh
Q 046682 34 SITQFVLVYHCKSAPFN-LLHL-AYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWL 109 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~-~~~l-~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l 109 (236)
.+|+.|+|.|-..-... +..+ .-+|+|++|.|.+- .-.++. .--.+||+|.+|+|+++ +++++..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~---------~lc~sFpNL~sLDIS~T-nI~nl~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS---------QLCASFPNLRSLDISGT-NISNLSGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH---------HHhhccCccceeecCCC-CccCcHHH
Confidence 46777777663221000 0112 24577777777664 111110 01135777777777776 57777666
Q ss_pred hcccCccEEeEecc
Q 046682 110 VFVQILKQLRIVFC 123 (236)
Q Consensus 110 ~~lp~L~~L~i~~C 123 (236)
+.++||+.|.+.+.
T Consensus 192 S~LknLq~L~mrnL 205 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNL 205 (699)
T ss_pred hccccHHHHhccCC
Confidence 77777777766543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.27 E-value=0.00027 Score=67.38 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=29.4
Q ss_pred cCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 149 FAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 149 ~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
.++|+.|+|+++ +|..++... .++|+.|+++++ +|..+|..
T Consensus 366 p~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 366 PPTITTLDVSRN-ALTNLPENL--PAALQIMQASRN-NLVRLPES 406 (754)
T ss_pred cCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhccC-CcccCchh
Confidence 368999999886 466665432 247888988886 67788764
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=0.00013 Score=68.91 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=8.9
Q ss_pred hhcccCCceeecCCccc
Q 046682 55 AYMENLQELDLEDINLE 71 (236)
Q Consensus 55 ~~l~~L~~L~i~~c~le 71 (236)
.++++|..|+|+++++.
T Consensus 170 ~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNIS 186 (699)
T ss_pred hccCccceeecCCCCcc
Confidence 34555555555555443
No 20
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=4.7e-05 Score=63.95 Aligned_cols=132 Identities=19% Similarity=0.150 Sum_probs=85.4
Q ss_pred cCCcceeEEeeeh---HHHHHHhcCCcccccceEEEEeccCCC--CccccchhhcccCCceeecCC--ccceeeeccccc
Q 046682 8 KHLNVLSWSFGSS---LAVQKFLKYPKLVSITQFVLVYHCKSA--PFNLLHLAYMENLQELDLEDI--NLEEMKIDSTEE 80 (236)
Q Consensus 8 ~~L~~L~i~~~~~---~~l~~l~~~~~l~~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~c--~le~l~~~~~~~ 80 (236)
++|..|+++.++. .+++.++... ++|..|+|.-|... .+.+....--++|..|+++|| ++..-.+.
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~sc---s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~---- 306 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSC---SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS---- 306 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhh---hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH----
Confidence 4556666665442 2344555443 58999999999652 111111122278999999999 55421110
Q ss_pred ccccCccCCCCccEEEEecCCCCCc--chhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecc
Q 046682 81 VKKLFQSGFRSLDRVVISSCKKMKD--LTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIK 158 (236)
Q Consensus 81 ~~~~~~~~l~~L~~L~i~~c~~l~~--l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~ 158 (236)
.-....|+|.+|++++|-.++. +..+..++.|++|.++.|..+- +.. . ..+...|+|.+|++.
T Consensus 307 ---tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~~----~-----~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 307 ---TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PET----L-----LELNSKPSLVYLDVF 371 (419)
T ss_pred ---HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hHH----e-----eeeccCcceEEEEec
Confidence 1123478999999999998886 2235589999999999998662 110 0 245678999999998
Q ss_pred ccc
Q 046682 159 WGR 161 (236)
Q Consensus 159 ~~~ 161 (236)
+|-
T Consensus 372 g~v 374 (419)
T KOG2120|consen 372 GCV 374 (419)
T ss_pred ccc
Confidence 763
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.03 E-value=2.7e-05 Score=71.29 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=37.5
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhh
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLV 110 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~ 110 (236)
..|++|.+++.+-..+++..+++|++|+.|++++- .+..+ +++...+.+|+.++++ |.++..+| .+.
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~---------Ptsld~l~NL~dvDlS-~N~Lp~vPecly 242 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI---------PTSLDDLHNLRDVDLS-ENNLPIVPECLY 242 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC---------CCchhhhhhhhhcccc-ccCCCcchHHHh
Confidence 34555555554322223334556666666666655 22222 2333445555555553 33444443 233
Q ss_pred cccCccEEeEec
Q 046682 111 FVQILKQLRIVF 122 (236)
Q Consensus 111 ~lp~L~~L~i~~ 122 (236)
.+++|..|.+++
T Consensus 243 ~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhheeccCc
Confidence 455555555544
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.02 E-value=0.0033 Score=60.19 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=15.7
Q ss_pred cCCcceeEEeeehHHHHHHhcCCcccccceEEEEecc
Q 046682 8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHC 44 (236)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c 44 (236)
.+|++|+++... +..+ +.++++|+.|.+.++
T Consensus 242 ~~Lk~LdLs~N~---LtsL---P~lp~sL~~L~Ls~N 272 (788)
T PRK15387 242 PELRTLEVSGNQ---LTSL---PVLPPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEecCCc---cCcc---cCcccccceeeccCC
Confidence 566777765432 2222 123346666666555
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.00 E-value=0.00013 Score=66.28 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=68.3
Q ss_pred hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecc
Q 046682 54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIIS 131 (236)
Q Consensus 54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~ 131 (236)
+-.++.|+.|+++.+.++.|.++.+ ...++|+.|+++.- ++..++. +..+..|++|.+++- .+..+-.
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~W--------sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e 358 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSW--------SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE 358 (873)
T ss_pred ccccchhhhhccchhhhheeecchh--------hhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHh
Confidence 3467888888888776666665544 34577888877653 4555432 223444455444331 1111100
Q ss_pred cc------------ccccc---cccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682 132 VD------------KLRDI---SEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP 185 (236)
Q Consensus 132 ~~------------~~~~~---~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 185 (236)
.. ...+. .|+......++|+|+.|.+.+ .+++.|+.. ..++++|++|++-+=+
T Consensus 359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 00 00000 011113456789999999976 578888765 3468899999887643
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.84 E-value=0.00032 Score=68.05 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=12.3
Q ss_pred cccCcccEEeccccccccccC
Q 046682 147 NFFAQLESLTIKWGRNLKSVY 167 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~i~ 167 (236)
...|+|+.|++.+|+.++.+.
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred hccCcccEEEEecccccccCC
Confidence 345666666666666655543
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.78 E-value=0.0053 Score=58.81 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=14.7
Q ss_pred CccEEEEecCCCCCcchhhhcccCccEEeEecc
Q 046682 91 SLDRVVISSCKKMKDLTWLVFVQILKQLRIVFC 123 (236)
Q Consensus 91 ~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C 123 (236)
+|+.|+++++ +++.++. .+++|+.|+++++
T Consensus 283 ~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N 312 (788)
T PRK15387 283 GLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN 312 (788)
T ss_pred hcCEEECcCC-ccccccc--cccccceeECCCC
Confidence 4555555544 3444432 2355666666554
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.71 E-value=0.00022 Score=60.12 Aligned_cols=127 Identities=19% Similarity=0.172 Sum_probs=82.1
Q ss_pred cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCcc
Q 046682 8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQS 87 (236)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~ 87 (236)
+.|+.++++.. .+..+-++.++.+.++.|.++...-..+ .+++.+++|..|+++++.+..+ +++ ..
T Consensus 284 q~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~--~Gw-------h~ 349 (490)
T KOG1259|consen 284 QELTELDLSGN---LITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC--VGW-------HL 349 (490)
T ss_pred hhhhhcccccc---chhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh--hhh-------Hh
Confidence 45666666543 3455555667778889888887643333 5678888899999888733322 121 12
Q ss_pred CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 88 GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
.+.|.+.|.+.+- .++++..+..+=+|+.|++++- +++.+-. . ..++.+|+|+.+.+.+-|
T Consensus 350 KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~lde------V-----~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELDE------V-----NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHHH------h-----cccccccHHHHHhhcCCC
Confidence 4667888887664 5677777777778888888652 3332211 0 467788888888887655
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00036 Score=61.34 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=41.0
Q ss_pred ccceEEEEeccCCCCcc--ccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCC--cchh-
Q 046682 34 SITQFVLVYHCKSAPFN--LLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMK--DLTW- 108 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~--~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~--~l~~- 108 (236)
++++.|++++---.... ..-+..+++|+.|+++.+.+..... . .....+++|+.|.+..| ++. ++.|
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s------~~~~~l~~lK~L~l~~C-Gls~k~V~~~ 217 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-S------NTTLLLSHLKQLVLNSC-GLSWKDVQWI 217 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-c------cchhhhhhhheEEeccC-CCCHHHHHHH
Confidence 56666666644211110 0113566777777777663322211 0 11124667777777777 333 2222
Q ss_pred hhcccCccEEeEecc
Q 046682 109 LVFVQILKQLRIVFC 123 (236)
Q Consensus 109 l~~lp~L~~L~i~~C 123 (236)
+..+|+|+.|++..-
T Consensus 218 ~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEAN 232 (505)
T ss_pred HHhCCcHHHhhhhcc
Confidence 235677777766644
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.49 E-value=0.0024 Score=58.47 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=59.1
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccc-
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEV- 81 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~- 81 (236)
++.+|.+|+.+.+.... +..+........++..|.+..---..+.-.+++.++.|+.|+++.+.+.+|.-.....+
T Consensus 97 ~f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ 173 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKV 173 (873)
T ss_pred HHhcCCcceeeeeccch---hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCC
Confidence 45567778887776543 33333333344577778777653333322345666667777766553333321110000
Q ss_pred ---------------cccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEe
Q 046682 82 ---------------KKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIV 121 (236)
Q Consensus 82 ---------------~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~ 121 (236)
+......|.+|..|.+++- +++.++. ...+|.|+.|++.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcc
Confidence 0011233445666666543 4555543 3357888888775
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.46 E-value=0.00038 Score=60.88 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=37.9
Q ss_pred cccCcccEEecccccccccc-----CCCCCCCCCccEEeEeCCCCCCCcCCCCCCCC---CcceEEechHHH
Q 046682 147 NFFAQLESLTIKWGRNLKSV-----YPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVK---ERRVVIEGEKEW 210 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~i-----~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~---~~l~~~~~~~~w 210 (236)
..-|.|+.|.++.|.....- .....+...|+.+.+.+||.+..--....+.. ++...|.|....
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 35678888888877655433 22344567788888888888766443332222 444455554433
No 30
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00048 Score=54.73 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=33.0
Q ss_pred cCCCCccEEEEecCCCCCcch--hh-hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682 87 SGFRSLDRVVISSCKKMKDLT--WL-VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL 163 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~--~l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 163 (236)
..+++++.|.+.+|..+.+.- .+ +-.|+|+.|+|++|+.+++-.- ..+..|++|+.|.|++++..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL------------~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL------------ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH------------HHHHHhhhhHHHHhcCchhh
Confidence 345555555555555544421 11 1345566666666655543210 23445566666666655544
Q ss_pred cc
Q 046682 164 KS 165 (236)
Q Consensus 164 ~~ 165 (236)
..
T Consensus 190 ~~ 191 (221)
T KOG3864|consen 190 AN 191 (221)
T ss_pred hc
Confidence 43
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.23 E-value=0.0061 Score=36.38 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=17.2
Q ss_pred CccEEEEecCCCCCcchh-hhcccCccEEeEecc
Q 046682 91 SLDRVVISSCKKMKDLTW-LVFVQILKQLRIVFC 123 (236)
Q Consensus 91 ~L~~L~i~~c~~l~~l~~-l~~lp~L~~L~i~~C 123 (236)
+|+.|+++++ ++++++. +..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4555666555 4555554 555666666666555
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.20 E-value=0.00015 Score=63.37 Aligned_cols=164 Identities=13% Similarity=0.170 Sum_probs=97.0
Q ss_pred ccceEEEEeccCCCCcc-c-cchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--
Q 046682 34 SITQFVLVYHCKSAPFN-L-LHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW-- 108 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~-~-~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-- 108 (236)
..|+.|+++||.+.... + ....+.+++++|.+.+| .+.+..... -....+.|++|++..|..+++...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-------la~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-------LARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-------HHHhcchhhhhhhcccchhHHHHHHH
Confidence 57899999999874331 0 12367799999999999 776543211 123578899999999999888642
Q ss_pred -hhcccCccEEeEecccccce----ecccc-cc--------cccccccc--ccccccCcccEEeccccccccccCC--CC
Q 046682 109 -LVFVQILKQLRIVFCTEMEE----IISVD-KL--------RDISEIIG--SEHNFFAQLESLTIKWGRNLKSVYP--NP 170 (236)
Q Consensus 109 -l~~lp~L~~L~i~~C~~L~~----i~~~~-~~--------~~~~~~~~--~~~~~~p~L~~L~l~~~~~L~~i~~--~~ 170 (236)
...+|+|++|.++.|+.+.. .+..+ .. ....+.+. ......+-+..+.+..|..++.... ..
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 23689999999999998876 11100 00 00000000 0001123344444445655543321 12
Q ss_pred CCCCCccEEeEeCCCCCCCcCCCCCCC-CCcceEE
Q 046682 171 LPLPKLKKIQVRGCPQLKKLPVNSSSV-KERRVVI 204 (236)
Q Consensus 171 ~~~p~L~~L~i~~C~~L~~lp~~~~~~-~~~l~~~ 204 (236)
..+..|+.|..++|..+...+...... ..+|.++
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l 325 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVL 325 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEE
Confidence 346778999999998877766433222 1455544
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.03 E-value=0.00037 Score=62.57 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=50.5
Q ss_pred ccceEEEEecc-CCCCc----cccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcch
Q 046682 34 SITQFVLVYHC-KSAPF----NLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT 107 (236)
Q Consensus 34 ~~L~~L~l~~c-~~~~~----~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~ 107 (236)
+.|+.|.+.+| ..... .......+.+|+.|.+..| .+.+..+... ....++|+.|.+.+|..+++..
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l-------~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL-------ASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH-------HhhCCCcceEccCCCCccchhH
Confidence 46666777663 21100 0012334466677777766 4443322111 1126789999888888766532
Q ss_pred ---hhhcccCccEEeEecccccc
Q 046682 108 ---WLVFVQILKQLRIVFCTEME 127 (236)
Q Consensus 108 ---~l~~lp~L~~L~i~~C~~L~ 127 (236)
....+|+|++|+|++|..+.
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHHHHHhcCcccEEeeecCccch
Confidence 23468889999999988873
No 34
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.03 E-value=0.0019 Score=59.67 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=20.6
Q ss_pred ccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCC
Q 046682 148 FFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSS 195 (236)
Q Consensus 148 ~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~ 195 (236)
.+++|+.|.+++ .+++.+......+..|+.|.++. .+|..+|....
T Consensus 243 ~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avc 288 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVC 288 (1255)
T ss_pred hhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHh
Confidence 344555555543 22333332333344555555554 25555555433
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.02 E-value=0.011 Score=35.32 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=18.3
Q ss_pred cCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcc
Q 046682 59 NLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL 106 (236)
Q Consensus 59 ~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l 106 (236)
+|++|++++++++++. +....+++|+.|+++++ .++++
T Consensus 2 ~L~~L~l~~N~i~~l~---------~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP---------PELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHG---------GHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccC---------chHhCCCCCCEEEecCC-CCCCC
Confidence 4556666655444431 11345666666666655 34443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.00 E-value=0.0017 Score=54.98 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=58.9
Q ss_pred ccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc---cccc---cc--ccc-cccccccCcccEEe
Q 046682 86 QSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD---KLRD---IS--EII-GSEHNFFAQLESLT 156 (236)
Q Consensus 86 ~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~---~~~~---~~--~~~-~~~~~~~p~L~~L~ 156 (236)
....|.++.|+++.- ++..+..+..+++|+.|++++- .+.++.+.. ++.. .. .++ -+.+..+-+|..|+
T Consensus 303 vKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLD 380 (490)
T ss_pred hhhccceeEEecccc-ceeeehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecc
Confidence 345678888888664 5666666788999999999763 233322111 0000 00 000 03445566777777
Q ss_pred ccc--cccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 157 IKW--GRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 157 l~~--~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
+++ ..++.... +.+.+|+|+.+.+.+-| +..+|.
T Consensus 381 l~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 381 LSSNQIEELDEVN-HIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred ccccchhhHHHhc-ccccccHHHHHhhcCCC-ccccch
Confidence 764 22333332 35679999999888754 444443
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.83 E-value=0.0019 Score=61.64 Aligned_cols=106 Identities=18% Similarity=0.194 Sum_probs=51.2
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ 113 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp 113 (236)
++|+.|++.+-.=..++-..+.++..|++|+++|+.++.++ .....++.|+.|.-.+ ..+..+|.+.++|
T Consensus 383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp---------~tva~~~~L~tL~ahs-N~l~~fPe~~~l~ 452 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP---------DTVANLGRLHTLRAHS-NQLLSFPELAQLP 452 (1081)
T ss_pred cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh---------HHHHhhhhhHHHhhcC-CceeechhhhhcC
Confidence 34444444443222222222344445555555555444332 1223344455443211 2244445566777
Q ss_pred CccEEeEecccccceeccccccccccccccccccccCcccEEecccccc
Q 046682 114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRN 162 (236)
Q Consensus 114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 162 (236)
+|+.+++ +|.++..+.-. ....-|+|++|++.+-+.
T Consensus 453 qL~~lDl-S~N~L~~~~l~------------~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 453 QLKVLDL-SCNNLSEVTLP------------EALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cceEEec-ccchhhhhhhh------------hhCCCcccceeeccCCcc
Confidence 8888877 46667655421 011127888888877654
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.0016 Score=57.33 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=38.2
Q ss_pred cccceEEEEeccCCCCccc-cchhhcccCCceeecCC---ccceeeecccccccccCccCCCCccEEEEecCCCCCcch-
Q 046682 33 VSITQFVLVYHCKSAPFNL-LHLAYMENLQELDLEDI---NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT- 107 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~-~~l~~l~~L~~L~i~~c---~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~- 107 (236)
.+.|+...+.+|.-..... ...+.+++++.|+++.+ +...+. .-...||+|+.|+++.- ++....
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~---------~i~eqLp~Le~LNls~N-rl~~~~~ 189 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL---------KIAEQLPSLENLNLSSN-RLSNFIS 189 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH---------HHHHhcccchhcccccc-cccCCcc
Confidence 3556666666664211100 12455666666666655 333220 01124666666666432 222210
Q ss_pred --hhhcccCccEEeEeccc
Q 046682 108 --WLVFVQILKQLRIVFCT 124 (236)
Q Consensus 108 --~l~~lp~L~~L~i~~C~ 124 (236)
.-..+++|+.|.++.|.
T Consensus 190 s~~~~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCG 208 (505)
T ss_pred ccchhhhhhhheEEeccCC
Confidence 01245666666666664
No 39
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.44 E-value=0.0029 Score=49.48 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=71.5
Q ss_pred cchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceec
Q 046682 52 LHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEII 130 (236)
Q Consensus 52 ~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~ 130 (236)
+.+-.+.+...|.++.+.+..+ +|.+..+.+|+.|++++- .++.++ .+.++|.|+.|.++ ...+.-++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~v---------ppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~lp 95 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVV---------PPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNILP 95 (264)
T ss_pred ccccchhhhhhhhcccCceeec---------CCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcCc
Confidence 3345667778888877744433 456667888888888775 567765 56788888888885 33333222
Q ss_pred cccccccccccccccccccCcccEEecccc-ccccccCCCCCCCCCccEEeEeC
Q 046682 131 SVDKLRDISEIIGSEHNFFAQLESLTIKWG-RNLKSVYPNPLPLPKLKKIQVRG 183 (236)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~-~~L~~i~~~~~~~p~L~~L~i~~ 183 (236)
..+++||.|+.|++.+- -+=.++++..+.+..|+.|++.+
T Consensus 96 -------------rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 96 -------------RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred -------------cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 46778999999999642 22234555556667777776665
No 40
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.88 E-value=0.02 Score=26.77 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=9.6
Q ss_pred CCccEEeEeCCCCCCCcC
Q 046682 174 PKLKKIQVRGCPQLKKLP 191 (236)
Q Consensus 174 p~L~~L~i~~C~~L~~lp 191 (236)
|+|+.|++++|. |+.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777888776 77766
No 41
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.24 E-value=0.0048 Score=59.04 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=28.4
Q ss_pred cccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCC
Q 046682 145 EHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQ 186 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~ 186 (236)
.+..+|.|+.++++ |.+|+.+... ....|.|++|++++=+.
T Consensus 447 e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 44567888888886 5667665432 33448999999998653
No 42
>PLN03150 hypothetical protein; Provisional
Probab=93.86 E-value=0.12 Score=48.65 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=50.6
Q ss_pred ccCCCCccEEEEecCCCCC-cch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682 86 QSGFRSLDRVVISSCKKMK-DLT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL 163 (236)
Q Consensus 86 ~~~l~~L~~L~i~~c~~l~-~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 163 (236)
...+++|+.|+++++ .+. .++ .+..+++|+.|+++++.--..++ ..+..+++|+.|++++..--
T Consensus 438 i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-------------~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 438 ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-------------ESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCc-------------hHHhcCCCCCEEECcCCccc
Confidence 455677777777776 344 333 35677777777777653221222 24456777888887765422
Q ss_pred cccCCCCC-CCCCccEEeEeCCCCCCCcC
Q 046682 164 KSVYPNPL-PLPKLKKIQVRGCPQLKKLP 191 (236)
Q Consensus 164 ~~i~~~~~-~~p~L~~L~i~~C~~L~~lp 191 (236)
..++.... .+.++..+.+.+.+.+...|
T Consensus 504 g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 504 GRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ccCChHHhhccccCceEEecCCccccCCC
Confidence 23332211 12345566666665555444
No 43
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.40 E-value=0.016 Score=52.00 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=56.8
Q ss_pred ccceEEEEeccCCCCc--cccchhhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCcch--
Q 046682 34 SITQFVLVYHCKSAPF--NLLHLAYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-- 107 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~--~~~~l~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-- 107 (236)
+.++.+.+.+|..... ........++|+.|++.+| ....... .. .......++|++|++..|..+.+..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~----~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LL----LLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-Hh----hhhhhhcCCcCccchhhhhccCchhHH
Confidence 4566666666644211 0122345566666666663 2111100 00 0111234667777777776555432
Q ss_pred hhh-cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682 108 WLV-FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL 163 (236)
Q Consensus 108 ~l~-~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 163 (236)
.+. .+|+|++|.+.+|..++.-. .. ......|+|+.|+|++|..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~g-----l~------~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEG-----LV------SIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhH-----HH------HHHHhcCcccEEeeecCccc
Confidence 222 36777777777776632211 00 12235667777777777765
No 44
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.004 Score=52.17 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=7.3
Q ss_pred ccCcccEEeccccc
Q 046682 148 FFAQLESLTIKWGR 161 (236)
Q Consensus 148 ~~p~L~~L~l~~~~ 161 (236)
++|+|+.|+|..-|
T Consensus 86 nlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 86 NLPSLRTLWLDENP 99 (388)
T ss_pred cCchhhhHhhccCC
Confidence 45555555555443
No 45
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.71 E-value=0.028 Score=49.45 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=52.2
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccc-hhhcccCCceeecCCccceeeeccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEVK 82 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~~ 82 (236)
+..+++|..|+++..- +-++..-..-...||.|+|+.-....+ +. +-.+..|+.+-.++..+..+..+
T Consensus 431 l~~l~kLt~L~L~NN~---Ln~LP~e~~~lv~Lq~LnlS~NrFr~l--P~~~y~lq~lEtllas~nqi~~vd~~------ 499 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNL---LNDLPEEMGSLVRLQTLNLSFNRFRML--PECLYELQTLETLLASNNQIGSVDPS------ 499 (565)
T ss_pred HHhhhcceeeecccch---hhhcchhhhhhhhhheecccccccccc--hHHHhhHHHHHHHHhccccccccChH------
Confidence 4556666666655321 222211111124577777776543222 21 12223344433333344433221
Q ss_pred ccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecc
Q 046682 83 KLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFC 123 (236)
Q Consensus 83 ~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C 123 (236)
....+.+|..|++.+- .+..+| .++++.+|++|.+++-
T Consensus 500 --~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 500 --GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred --HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCC
Confidence 2345677777777553 455554 3567788888877764
No 46
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=0.0034 Score=52.54 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=40.6
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCc---chhhh
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD---LTWLV 110 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~---l~~l~ 110 (236)
.+.+.|+.+||.-..+ +-...|+.|+.|.++-+.+.++. +.....+|++|++..- .+.+ +.-+.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~----------pl~rCtrLkElYLRkN-~I~sldEL~YLk 85 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA----------PLQRCTRLKELYLRKN-CIESLDELEYLK 85 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch----------hHHHHHHHHHHHHHhc-ccccHHHHHHHh
Confidence 3556677777742222 44567778887777655333221 1123455666665321 2333 23455
Q ss_pred cccCccEEeEec
Q 046682 111 FVQILKQLRIVF 122 (236)
Q Consensus 111 ~lp~L~~L~i~~ 122 (236)
.+|+|..|+|..
T Consensus 86 nlpsLr~LWL~E 97 (388)
T KOG2123|consen 86 NLPSLRTLWLDE 97 (388)
T ss_pred cCchhhhHhhcc
Confidence 667777776654
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.15 E-value=0.15 Score=45.01 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=67.5
Q ss_pred cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhh-ccc
Q 046682 35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLV-FVQ 113 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~-~lp 113 (236)
+|+.|++.+-.-..+. ..+..+++|+.|.+.++.+.++.. .....++|+.|++++. ++..++... .+.
T Consensus 141 nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~---------~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~ 209 (394)
T COG4886 141 NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPK---------LLSNLSNLNNLDLSGN-KISDLPPEIELLS 209 (394)
T ss_pred hcccccccccchhhhh-hhhhccccccccccCCchhhhhhh---------hhhhhhhhhheeccCC-ccccCchhhhhhh
Confidence 6777777665332221 246677888888888775544421 1114567777777665 566665442 333
Q ss_pred CccEEeEecccccceeccccc--cc-----cccccc--cccccccCcccEEeccccccccccCCCCCCCCCccEEeEeC
Q 046682 114 ILKQLRIVFCTEMEEIISVDK--LR-----DISEII--GSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRG 183 (236)
Q Consensus 114 ~L~~L~i~~C~~L~~i~~~~~--~~-----~~~~~~--~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~ 183 (236)
.|++|.+.+-..++.+..... .. ...... ...+..+++|++|.+.+. .+..+.. ...+.+|+.|++.+
T Consensus 210 ~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 210 ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccccccc-ccccCccCEEeccC
Confidence 366666664422221110000 00 000000 023445566777776542 2333333 34456677776665
No 48
>PLN03150 hypothetical protein; Provisional
Probab=92.02 E-value=0.27 Score=46.34 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=59.9
Q ss_pred ccEEEEecCCCCCc-ch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC
Q 046682 92 LDRVVISSCKKMKD-LT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN 169 (236)
Q Consensus 92 L~~L~i~~c~~l~~-l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~ 169 (236)
++.|++.++ .+.. ++ .+..+++|+.|+++++.--..+. ..+..+++|+.|++++..--..++..
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-------------~~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIP-------------PSLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCC-------------hHHhCCCCCCEEECCCCCCCCCCchH
Confidence 667777665 3443 22 36688999999998864222222 24567899999999886433345555
Q ss_pred CCCCCCccEEeEeCCCCCCCcCCC
Q 046682 170 PLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 170 ~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
...+++|+.|++.++.--..+|..
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChH
Confidence 567899999999998655466654
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=0.039 Score=44.11 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=43.8
Q ss_pred ccceEEEEeccCCCC-ccccch-hhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcc
Q 046682 34 SITQFVLVYHCKSAP-FNLLHL-AYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL 106 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~-~~~~~l-~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l 106 (236)
..+++|.+.+|.... .-+.-+ +-.++|+.|+|++| ++.+--+. ....|++|+.|.|.+.+...+.
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--------~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--------CLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--------HHHHhhhhHHHHhcCchhhhch
Confidence 678889999997511 100112 13489999999999 87754221 2346899999999887776654
No 50
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.38 E-value=0.07 Score=47.06 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=33.5
Q ss_pred cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682 145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 185 (236)
.+..+.+|.+|++.+ ..++.++.+.+.+.+|++|.+.+=|
T Consensus 500 ~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 467788999999875 5688899888899999999999854
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.09 E-value=0.082 Score=46.57 Aligned_cols=144 Identities=16% Similarity=0.165 Sum_probs=83.5
Q ss_pred ccceEEEEeccCCCCccccch-hhcc-cCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhh-
Q 046682 34 SITQFVLVYHCKSAPFNLLHL-AYME-NLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLV- 110 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l-~~l~-~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~- 110 (236)
..+..|.+.+-....+ +.. ..+. +|+.|++++..++.+. .....+++|+.|.+.++ .+.+++...
T Consensus 116 ~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~N~i~~l~---------~~~~~l~~L~~L~l~~N-~l~~l~~~~~ 183 (394)
T COG4886 116 TNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSDNKIESLP---------SPLRNLPNLKNLDLSFN-DLSDLPKLLS 183 (394)
T ss_pred cceeEEecCCcccccC--ccccccchhhcccccccccchhhhh---------hhhhccccccccccCCc-hhhhhhhhhh
Confidence 4577777776654444 333 3443 8999999988666552 13457899999999998 688887765
Q ss_pred cccCccEEeEecccccceeccc---cccccccccc-------cccccccCcccEEeccccccccccCCCCCCCCCccEEe
Q 046682 111 FVQILKQLRIVFCTEMEEIISV---DKLRDISEII-------GSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQ 180 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~---~~~~~~~~~~-------~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~ 180 (236)
.+++|+.|++++. ++..+... .......... ...+..+.++..+.+.+. .++.+......+++++.|.
T Consensus 184 ~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 184 NLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLD 261 (394)
T ss_pred hhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccchhccccccceec
Confidence 8999999999874 45444432 1100000000 012233444444443221 1222223344567788888
Q ss_pred EeCCCCCCCcCC
Q 046682 181 VRGCPQLKKLPV 192 (236)
Q Consensus 181 i~~C~~L~~lp~ 192 (236)
+.++ ++..++.
T Consensus 262 ~s~n-~i~~i~~ 272 (394)
T COG4886 262 LSNN-QISSISS 272 (394)
T ss_pred cccc-ccccccc
Confidence 8876 5555543
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=0.072 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=14.2
Q ss_pred CCCCCccEEeEeCCCCCCCcCCC
Q 046682 171 LPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 171 ~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
..||+|..|.+.+-|-...+--+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred cCCchhheeeccCCcccccccCC
Confidence 35777777777766655554443
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.21 E-value=0.16 Score=42.05 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=38.6
Q ss_pred cceEEEEeccCCCCccccchhhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCc---chhh
Q 046682 35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD---LTWL 109 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~---l~~l 109 (236)
.|+.|++.++.-.++ ..++.|++|+.|.++.+ .+. +.++ ......|+|+++++++- +++. +.++
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~-~~l~-------vl~e~~P~l~~l~ls~N-ki~~lstl~pl 112 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVS-GGLE-------VLAEKAPNLKVLNLSGN-KIKDLSTLRPL 112 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCccccc-ccce-------ehhhhCCceeEEeecCC-ccccccccchh
Confidence 445555555532233 44556666666666654 211 1000 11123366666666543 3332 3344
Q ss_pred hcccCccEEeEeccccc
Q 046682 110 VFVQILKQLRIVFCTEM 126 (236)
Q Consensus 110 ~~lp~L~~L~i~~C~~L 126 (236)
..+++|..|++.+|+-.
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 45566666666666533
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=87.96 E-value=0.93 Score=36.48 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=26.2
Q ss_pred hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecC--CCCCcchhhhcccCccEEeEe
Q 046682 54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSC--KKMKDLTWLVFVQILKQLRIV 121 (236)
Q Consensus 54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c--~~l~~l~~l~~lp~L~~L~i~ 121 (236)
++.++.|.+|.+.++++..|.-+- ...+++|+.|.+.+- .++.++..+..+|.|++|.+-
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L--------~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDL--------DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred CCCccccceEEecCCcceeeccch--------hhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 444455555555555444331110 112455555555442 123333344455555555443
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.22 E-value=0.4 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.831 Sum_probs=12.7
Q ss_pred CCCccEEeEeCCCCCCC
Q 046682 173 LPKLKKIQVRGCPQLKK 189 (236)
Q Consensus 173 ~p~L~~L~i~~C~~L~~ 189 (236)
+|+|++|.+++|+++..
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888887654
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.14 E-value=0.36 Score=43.11 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=37.1
Q ss_pred ccceEEEEeccCCCCccccc-hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcc
Q 046682 34 SITQFVLVYHCKSAPFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFV 112 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~l 112 (236)
+.+..|.+++-.-..+ .+ +..+++|+.|.++++.+..+. +...++.|+.|++.+. .+..+..+..+
T Consensus 95 ~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~----------~l~~l~~L~~L~l~~N-~i~~~~~~~~l 161 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKLE----------GLSTLTLLKELNLSGN-LISDISGLESL 161 (414)
T ss_pred cceeeeeccccchhhc--ccchhhhhcchheecccccccccc----------chhhccchhhheeccC-cchhccCCccc
Confidence 4445555544432233 44 566677777777766443331 1223444555555544 34444444445
Q ss_pred cCccEEeEec
Q 046682 113 QILKQLRIVF 122 (236)
Q Consensus 113 p~L~~L~i~~ 122 (236)
++|+.+++++
T Consensus 162 ~~L~~l~l~~ 171 (414)
T KOG0531|consen 162 KSLKLLDLSY 171 (414)
T ss_pred hhhhcccCCc
Confidence 5555555543
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.41 E-value=0.36 Score=40.03 Aligned_cols=136 Identities=15% Similarity=0.071 Sum_probs=76.5
Q ss_pred cceEEEEeccCCCCccccc-hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCC-CCC-cch-hhh
Q 046682 35 ITQFVLVYHCKSAPFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCK-KMK-DLT-WLV 110 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~-~l~-~l~-~l~ 110 (236)
..+.+.+.+|....-.+.. ...+..|+.|.+.++.+.++ .....+|+|+.|.++.-. +.. .+. .+.
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e 88 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL----------TNFPKLPKLKKLELSDNYRRVSGGLEVLAE 88 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec----------ccCCCcchhhhhcccCCcccccccceehhh
Confidence 4455566666542111122 23456777777777744433 123457889999885430 111 122 234
Q ss_pred cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC---CCCCCCCccEEeEeCCCCC
Q 046682 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP---NPLPLPKLKKIQVRGCPQL 187 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~---~~~~~p~L~~L~i~~C~~L 187 (236)
.+|+|++|.+++- +++. +.. . ..+..+++|..|.+.+|+-.+.--. -..-+|+|++|+-.++..=
T Consensus 89 ~~P~l~~l~ls~N-ki~~-lst--------l--~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 89 KAPNLKVLNLSGN-KIKD-LST--------L--RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hCCceeEEeecCC-cccc-ccc--------c--chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 5699999988753 2322 110 0 3455677888888888876652111 1234789999988888665
Q ss_pred CCcCC
Q 046682 188 KKLPV 192 (236)
Q Consensus 188 ~~lp~ 192 (236)
..-+.
T Consensus 157 Ea~~~ 161 (260)
T KOG2739|consen 157 EAPEA 161 (260)
T ss_pred ccccc
Confidence 44443
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=86.07 E-value=0.31 Score=24.21 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=13.3
Q ss_pred CccEEeEeCCCCCCCcCCC
Q 046682 175 KLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 175 ~L~~L~i~~C~~L~~lp~~ 193 (236)
+|++|++++| +++.+|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4777888888 77777765
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.02 E-value=0.33 Score=43.34 Aligned_cols=103 Identities=19% Similarity=0.148 Sum_probs=59.4
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK 83 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~ 83 (236)
+..+++|..+...-. .++.+.....-..+|+.|.+++-.-..+ ..+..++.|+.|++.++.+..+.
T Consensus 91 l~~~~~l~~l~l~~n---~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~--------- 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN---KIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS--------- 156 (414)
T ss_pred cccccceeeeecccc---chhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc---------
Confidence 555666666665532 2444433122236788888876643333 55677778888888888554441
Q ss_pred cCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEec
Q 046682 84 LFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVF 122 (236)
Q Consensus 84 ~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~ 122 (236)
....+.+|+.+++.++ .+..+.. +..+.+|+.+++.+
T Consensus 157 -~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 157 -GLESLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred -CCccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccC
Confidence 1123666777776665 3444444 35666666666654
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=81.11 E-value=0.12 Score=49.01 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=40.7
Q ss_pred CcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhh
Q 046682 30 PKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWL 109 (236)
Q Consensus 30 ~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l 109 (236)
.++.+.+++|+++...-... ..+..+++|++|+|+.+.+..++- . +... ..|..|.|.+- .++.+-.+
T Consensus 183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~--l------~~~g-c~L~~L~lrnN-~l~tL~gi 250 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQ--L------SMVG-CKLQLLNLRNN-ALTTLRGI 250 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccc--c------chhh-hhheeeeeccc-HHHhhhhH
Confidence 33445666666665533333 345666777777776553322210 0 0011 12555655543 45555455
Q ss_pred hcccCccEEeEe
Q 046682 110 VFVQILKQLRIV 121 (236)
Q Consensus 110 ~~lp~L~~L~i~ 121 (236)
.++.+|..|+++
T Consensus 251 e~LksL~~LDls 262 (1096)
T KOG1859|consen 251 ENLKSLYGLDLS 262 (1096)
T ss_pred Hhhhhhhccchh
Confidence 566666666665
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.05 E-value=9.1 Score=27.39 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=4.0
Q ss_pred CCccEEEEe
Q 046682 90 RSLDRVVIS 98 (236)
Q Consensus 90 ~~L~~L~i~ 98 (236)
++|+.+.+.
T Consensus 35 ~~l~~i~~~ 43 (129)
T PF13306_consen 35 TSLKSINFP 43 (129)
T ss_dssp TT-SEEEES
T ss_pred ccccccccc
Confidence 345555554
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=76.71 E-value=3.7 Score=33.13 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHhcCCcccccceEEEEeccCCCCccccch-hhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCC
Q 046682 25 KFLKYPKLVSITQFVLVYHCKSAPFNLLHL-AYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKM 103 (236)
Q Consensus 25 ~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l-~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l 103 (236)
.+...+.+ ++|..|.+.+-.-..+. +.+ ..+++|..|.+.++++.++.- ..+...+|.|+.|.+.+-+ +
T Consensus 56 ~l~~lp~l-~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~d-------l~pLa~~p~L~~Ltll~Np-v 125 (233)
T KOG1644|consen 56 KLDNLPHL-PRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGD-------LDPLASCPKLEYLTLLGNP-V 125 (233)
T ss_pred hcccCCCc-cccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhh-------cchhccCCccceeeecCCc-h
Confidence 33333333 78888988877544443 334 456889999999884433310 1244567888888876643 2
Q ss_pred Ccc-----hhhhcccCccEEeEec
Q 046682 104 KDL-----TWLVFVQILKQLRIVF 122 (236)
Q Consensus 104 ~~l-----~~l~~lp~L~~L~i~~ 122 (236)
++. ..+..+|+|+.|+...
T Consensus 126 ~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 126 EHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hcccCceeEEEEecCcceEeehhh
Confidence 221 2245678888877753
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=76.67 E-value=0.41 Score=44.17 Aligned_cols=99 Identities=15% Similarity=0.236 Sum_probs=44.1
Q ss_pred ceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh-hhcccC
Q 046682 36 TQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW-LVFVQI 114 (236)
Q Consensus 36 L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-l~~lp~ 114 (236)
|+.|-+.+..-+.+. ..++.+.+|..|..+.|++.++. +..+.+.+|+.|.+..- .+.+++. +..+ .
T Consensus 145 Lkvli~sNNkl~~lp-~~ig~~~tl~~ld~s~nei~slp---------sql~~l~slr~l~vrRn-~l~~lp~El~~L-p 212 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLP-EEIGLLPTLAHLDVSKNEIQSLP---------SQLGYLTSLRDLNVRRN-HLEDLPEELCSL-P 212 (722)
T ss_pred ceeEEEecCccccCC-cccccchhHHHhhhhhhhhhhch---------HHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-c
Confidence 444455444332221 22344455666665555444332 22334455555554432 2333321 2222 2
Q ss_pred ccEEeEecccccceeccccccccccccccccccccCcccEEecccc
Q 046682 115 LKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWG 160 (236)
Q Consensus 115 L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 160 (236)
|.+|++ .|.++..|+ ..+..+..|++|.|.+-
T Consensus 213 Li~lDf-ScNkis~iP-------------v~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDF-SCNKISYLP-------------VDFRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeec-ccCceeecc-------------hhhhhhhhheeeeeccC
Confidence 344444 355555554 23345556666666543
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.73 E-value=1.6 Score=37.41 Aligned_cols=36 Identities=11% Similarity=-0.005 Sum_probs=17.5
Q ss_pred CcccEEecccccccccc--CCCCCCCCCccEEeEeCCC
Q 046682 150 AQLESLTIKWGRNLKSV--YPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 150 p~L~~L~l~~~~~L~~i--~~~~~~~p~L~~L~i~~C~ 185 (236)
|.+++|+...|+..... ..-...||++..+.+..||
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 34555555555433221 1112246677766666664
No 65
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=59.41 E-value=2.8 Score=37.19 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=16.3
Q ss_pred CCCCccEEEEecCCCCCcchhh--hcccCccEEeE
Q 046682 88 GFRSLDRVVISSCKKMKDLTWL--VFVQILKQLRI 120 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~l--~~lp~L~~L~i 120 (236)
.+..|+.|++++- +++.+.|. ..+.+|.+|.+
T Consensus 320 ~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 320 GLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccccceeeeecCC-eeEEEecccccccceeeeeeh
Confidence 3556666666653 45554442 23444555544
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=58.82 E-value=7.1 Score=19.75 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=12.6
Q ss_pred CCccEEeEeCCCCCCCcCCC
Q 046682 174 PKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 174 p~L~~L~i~~C~~L~~lp~~ 193 (236)
++|+.|++.++ +++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 56677777666 67777654
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=58.82 E-value=7.1 Score=19.75 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=12.6
Q ss_pred CCccEEeEeCCCCCCCcCCC
Q 046682 174 PKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 174 p~L~~L~i~~C~~L~~lp~~ 193 (236)
++|+.|++.++ +++.+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 56677777666 67777654
No 68
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=55.33 E-value=1.9 Score=38.28 Aligned_cols=67 Identities=22% Similarity=0.230 Sum_probs=41.0
Q ss_pred ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcc
Q 046682 32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL 106 (236)
Q Consensus 32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l 106 (236)
++.....+++..-.-..++...++.+++|+.|+++.++++.|..+.. ..+++|.+|.+++-.+++++
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF--------~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF--------KGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh--------hhhHhhhHHHhhcCCchhhh
Confidence 34667777777664444543457888999999999887776643222 23445555555554455544
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=52.09 E-value=8.5 Score=19.05 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=6.3
Q ss_pred cCccEEeEeccc
Q 046682 113 QILKQLRIVFCT 124 (236)
Q Consensus 113 p~L~~L~i~~C~ 124 (236)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 566667776654
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=48.24 E-value=7.1 Score=34.05 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=63.8
Q ss_pred hhhcccCCceeecCC--ccceeeecccccccccCccCCCCccEEEEecCCCCCcch------hhhcccCccEEeEecccc
Q 046682 54 LAYMENLQELDLEDI--NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT------WLVFVQILKQLRIVFCTE 125 (236)
Q Consensus 54 l~~l~~L~~L~i~~c--~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~------~l~~lp~L~~L~i~~C~~ 125 (236)
++..++|+.+.++.+ .-+.+.+- .......++|+.|+|.+- .++.-. .+..+|+|..|++++|-
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al------~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl- 252 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTAL------AEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL- 252 (382)
T ss_pred HHhccccceEEEecccccCchhHHH------HHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc-
Confidence 456688888888766 33322110 112345678888888653 232211 24567888899998883
Q ss_pred cceeccccccccccccccccccccCcccEEecccccccc-cc---CCCCCCCCCccEEeEeCCC
Q 046682 126 MEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK-SV---YPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 126 L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~-~i---~~~~~~~p~L~~L~i~~C~ 185 (236)
++. ........ .-...+|+|+.|.+.++.--. .. -......|.|+.|.+.+|.
T Consensus 253 l~~----~Ga~a~~~---al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 253 LEN----EGAIAFVD---ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccc----ccHHHHHH---HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 221 11111000 011247888888887654211 11 1112337888888888874
No 71
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=47.96 E-value=4.5 Score=37.66 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=17.8
Q ss_pred ccEEeccccccccccCCCCCCCCCccEEeEeC
Q 046682 152 LESLTIKWGRNLKSVYPNPLPLPKLKKIQVRG 183 (236)
Q Consensus 152 L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~ 183 (236)
|.+|+++ |.++..|+.....+..|++|.+.+
T Consensus 213 Li~lDfS-cNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 213 LIRLDFS-CNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred eeeeecc-cCceeecchhhhhhhhheeeeecc
Confidence 4455553 666777766555556666665543
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=44.69 E-value=1.2 Score=42.45 Aligned_cols=12 Identities=33% Similarity=0.194 Sum_probs=6.0
Q ss_pred ccCcCCcceeEE
Q 046682 5 LGLKHLNVLSWS 16 (236)
Q Consensus 5 ~~L~~L~~L~i~ 16 (236)
+-+.+|+.|+++
T Consensus 184 qll~ale~LnLs 195 (1096)
T KOG1859|consen 184 QLLPALESLNLS 195 (1096)
T ss_pred HHHHHhhhhccc
Confidence 334555555554
No 73
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=31.53 E-value=72 Score=18.43 Aligned_cols=9 Identities=11% Similarity=0.028 Sum_probs=4.4
Q ss_pred cccceEEEE
Q 046682 33 VSITQFVLV 41 (236)
Q Consensus 33 ~~~L~~L~l 41 (236)
+.+++.|.+
T Consensus 11 P~~l~~L~~ 19 (44)
T PF05725_consen 11 PSSLKSLIF 19 (44)
T ss_pred CCCCeEEEE
Confidence 345555555
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=23.10 E-value=65 Score=16.63 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=8.6
Q ss_pred ccCCceeecCCccc
Q 046682 58 ENLQELDLEDINLE 71 (236)
Q Consensus 58 ~~L~~L~i~~c~le 71 (236)
++|+.|+++++.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56677777666433
Done!