Query 046682
Match_columns 236
No_of_seqs 197 out of 1525
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 4.7E-14 1.6E-18 120.3 11.9 209 3-218 99-320 (328)
2 4fcg_A Uncharacterized protein 99.4 3.2E-12 1.1E-16 108.9 14.3 183 7-205 80-283 (328)
3 4ezg_A Putative uncharacterize 99.2 5.7E-11 1.9E-15 93.6 9.3 130 34-191 44-175 (197)
4 3rfs_A Internalin B, repeat mo 99.2 7.7E-11 2.6E-15 97.5 10.4 133 34-192 63-198 (272)
5 3rfs_A Internalin B, repeat mo 99.1 2.3E-10 7.9E-15 94.6 10.5 158 2-186 57-217 (272)
6 2xwt_C Thyrotropin receptor; s 99.1 2.9E-10 1E-14 92.0 10.8 137 34-192 55-197 (239)
7 1h6t_A Internalin B; cell adhe 99.1 1.8E-10 6.2E-15 96.3 9.3 157 6-184 44-210 (291)
8 4fmz_A Internalin; leucine ric 99.1 1.1E-10 3.9E-15 99.3 7.6 155 4-192 173-328 (347)
9 1h6u_A Internalin H; cell adhe 99.1 2.5E-10 8.4E-15 96.3 9.4 98 87-191 126-233 (308)
10 3zyj_A Leucine-rich repeat-con 99.1 4.9E-10 1.7E-14 98.8 11.4 188 3-204 83-284 (440)
11 4ezg_A Putative uncharacterize 99.1 8E-10 2.7E-14 86.9 10.9 148 6-184 42-191 (197)
12 4fmz_A Internalin; leucine ric 99.1 4E-10 1.4E-14 95.9 9.7 163 4-191 128-303 (347)
13 3zyi_A Leucine-rich repeat-con 99.1 7.4E-10 2.5E-14 98.0 11.4 189 3-204 94-295 (452)
14 1h6t_A Internalin B; cell adhe 99.1 2.8E-10 9.4E-15 95.3 7.6 139 34-191 46-194 (291)
15 1m9s_A Internalin B; cell inva 99.1 3.1E-10 1.1E-14 104.3 8.3 158 6-185 41-208 (605)
16 1h6u_A Internalin H; cell adhe 99.0 6.4E-10 2.2E-14 93.7 9.3 149 3-161 58-228 (308)
17 1ozn_A Reticulon 4 receptor; N 99.0 9.9E-10 3.4E-14 91.1 9.7 89 88-192 127-218 (285)
18 1m9s_A Internalin B; cell inva 99.0 5.2E-10 1.8E-14 102.8 8.2 139 34-191 43-191 (605)
19 3zyj_A Leucine-rich repeat-con 99.0 1.9E-09 6.6E-14 94.9 11.0 182 8-204 64-260 (440)
20 2o6q_A Variable lymphocyte rec 99.0 1.8E-09 6.2E-14 89.0 9.9 170 8-204 37-210 (270)
21 2xwt_C Thyrotropin receptor; s 99.0 2.6E-09 8.8E-14 86.4 10.6 173 3-205 50-232 (239)
22 1p9a_G Platelet glycoprotein I 99.0 3E-09 1E-13 88.9 11.2 182 3-204 5-200 (290)
23 3o6n_A APL1; leucine-rich repe 99.0 1.8E-09 6E-14 93.6 9.8 108 89-204 225-344 (390)
24 2id5_A Lingo-1, leucine rich r 99.0 2.5E-09 8.5E-14 95.0 10.8 172 3-191 51-240 (477)
25 2ell_A Acidic leucine-rich nuc 99.0 3.9E-09 1.3E-13 80.7 10.3 136 32-193 22-165 (168)
26 2ast_B S-phase kinase-associat 99.0 1.8E-10 6E-15 97.6 2.8 110 5-124 90-206 (336)
27 1o6v_A Internalin A; bacterial 99.0 5.5E-09 1.9E-13 92.7 12.3 38 146-185 327-364 (466)
28 3m19_A Variable lymphocyte rec 99.0 1.2E-08 4E-13 83.2 13.4 149 32-204 33-184 (251)
29 3zyi_A Leucine-rich repeat-con 99.0 1.9E-09 6.6E-14 95.3 9.3 169 8-191 75-258 (452)
30 2id5_A Lingo-1, leucine rich r 99.0 9.6E-09 3.3E-13 91.1 13.8 176 4-204 124-325 (477)
31 2o6q_A Variable lymphocyte rec 98.9 1.6E-08 5.5E-13 83.2 13.7 128 34-184 85-215 (270)
32 1xeu_A Internalin C; cellular 98.9 2E-09 6.7E-14 88.8 8.0 146 5-185 38-183 (263)
33 1o6v_A Internalin A; bacterial 98.9 3.6E-09 1.2E-13 93.9 9.5 166 4-192 217-392 (466)
34 3o53_A Protein LRIM1, AGAP0063 98.9 3.7E-09 1.3E-13 89.2 7.9 101 4-123 76-179 (317)
35 3o6n_A APL1; leucine-rich repe 98.9 9E-09 3.1E-13 89.1 9.9 35 34-68 93-127 (390)
36 2z66_A Variable lymphocyte rec 98.9 5.5E-09 1.9E-13 87.4 8.0 155 6-186 76-235 (306)
37 3v47_A TOLL-like receptor 5B a 98.8 4.3E-08 1.5E-12 86.2 14.0 58 145-204 342-400 (455)
38 1ozn_A Reticulon 4 receptor; N 98.8 4E-08 1.4E-12 81.3 12.8 160 33-204 31-206 (285)
39 1xku_A Decorin; proteoglycan, 98.8 9.8E-09 3.3E-13 86.8 9.0 47 145-193 235-281 (330)
40 3oja_B Anopheles plasmodium-re 98.8 7.7E-09 2.6E-13 94.7 9.0 99 90-193 232-342 (597)
41 3vq2_A TLR4, TOLL-like recepto 98.8 5.5E-09 1.9E-13 95.3 7.7 174 4-204 372-550 (606)
42 2o6s_A Variable lymphocyte rec 98.8 4.6E-08 1.6E-12 77.2 11.8 130 33-185 27-159 (208)
43 2z66_A Variable lymphocyte rec 98.8 1.2E-08 4.2E-13 85.2 8.7 89 87-190 123-214 (306)
44 2z62_A TOLL-like receptor 4, v 98.8 1.6E-08 5.4E-13 83.4 9.2 155 34-204 52-229 (276)
45 2ast_B S-phase kinase-associat 98.8 1.9E-09 6.6E-14 91.1 3.7 158 4-184 114-282 (336)
46 3oja_A Leucine-rich immune mol 98.8 9.9E-09 3.4E-13 91.9 8.2 38 147-185 211-248 (487)
47 3bz5_A Internalin-J, INLJ; leu 98.8 1.6E-08 5.3E-13 89.9 9.5 99 5-123 39-137 (457)
48 3e6j_A Variable lymphocyte rec 98.8 4.7E-08 1.6E-12 78.7 11.0 129 33-185 39-170 (229)
49 4eco_A Uncharacterized protein 98.8 1.1E-08 3.9E-13 94.3 8.2 183 3-192 201-420 (636)
50 2z80_A TOLL-like receptor 2, v 98.8 1.1E-08 3.7E-13 87.4 7.2 40 88-128 122-164 (353)
51 3m19_A Variable lymphocyte rec 98.8 5.9E-08 2E-12 79.0 11.2 129 34-185 59-190 (251)
52 3oja_B Anopheles plasmodium-re 98.8 2.1E-08 7.1E-13 91.8 9.4 37 34-70 99-135 (597)
53 1p9a_G Platelet glycoprotein I 98.8 1.9E-08 6.3E-13 84.1 8.2 84 87-185 121-206 (290)
54 2z7x_B TOLL-like receptor 1, v 98.8 4.7E-08 1.6E-12 87.5 11.3 157 35-204 303-473 (520)
55 2z80_A TOLL-like receptor 2, v 98.7 6.7E-08 2.3E-12 82.5 11.5 132 32-184 50-184 (353)
56 3bz5_A Internalin-J, INLJ; leu 98.7 4.1E-08 1.4E-12 87.2 10.3 166 3-193 59-230 (457)
57 3vq2_A TLR4, TOLL-like recepto 98.7 4.2E-08 1.4E-12 89.5 10.5 154 34-204 307-478 (606)
58 2je0_A Acidic leucine-rich nuc 98.7 1.5E-08 5.1E-13 75.8 6.0 125 33-182 16-148 (149)
59 3rgz_A Protein brassinosteroid 98.7 2.9E-08 9.8E-13 93.5 8.9 121 3-124 95-234 (768)
60 2z63_A TOLL-like receptor 4, v 98.7 1.1E-08 3.8E-13 92.4 5.8 179 6-204 323-523 (570)
61 2z81_A CD282 antigen, TOLL-lik 98.7 3.1E-08 1.1E-12 89.2 8.7 158 5-193 331-491 (549)
62 4glp_A Monocyte differentiatio 98.7 8.5E-08 2.9E-12 80.5 10.4 137 34-192 145-289 (310)
63 4ecn_A Leucine-rich repeat pro 98.7 1.3E-07 4.5E-12 90.3 12.1 118 3-123 443-583 (876)
64 3t6q_A CD180 antigen; protein- 98.7 1.4E-07 4.7E-12 86.0 11.7 142 34-185 301-460 (606)
65 2ft3_A Biglycan; proteoglycan, 98.7 4.5E-08 1.5E-12 82.8 7.9 47 145-193 236-282 (332)
66 1xeu_A Internalin C; cellular 98.7 9.7E-08 3.3E-12 78.5 9.5 125 34-190 41-165 (263)
67 1a9n_A U2A', U2A'; complex (nu 98.6 6.9E-08 2.4E-12 74.3 7.8 125 34-184 19-150 (176)
68 3t6q_A CD180 antigen; protein- 98.6 6.1E-08 2.1E-12 88.4 8.7 37 87-124 422-460 (606)
69 2v9t_B SLIT homolog 2 protein 98.6 2.8E-07 9.6E-12 73.7 11.5 129 33-184 31-162 (220)
70 1xku_A Decorin; proteoglycan, 98.6 3.4E-07 1.2E-11 77.3 12.3 147 34-204 121-268 (330)
71 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 3.7E-07 1.3E-11 82.7 13.2 157 35-204 332-502 (562)
72 1wwl_A Monocyte differentiatio 98.6 6.8E-08 2.3E-12 81.2 7.6 181 6-204 93-301 (312)
73 2z7x_B TOLL-like receptor 1, v 98.6 7.9E-08 2.7E-12 86.1 8.4 40 145-185 439-479 (520)
74 1ogq_A PGIP-2, polygalacturona 98.6 1.1E-07 3.8E-12 80.0 8.9 176 3-192 71-262 (313)
75 2z81_A CD282 antigen, TOLL-lik 98.6 2.3E-07 7.7E-12 83.5 11.4 130 34-184 26-158 (549)
76 3e6j_A Variable lymphocyte rec 98.6 4.9E-07 1.7E-11 72.6 12.2 123 58-204 40-164 (229)
77 1ogq_A PGIP-2, polygalacturona 98.6 2.7E-08 9.4E-13 83.8 5.0 172 3-193 96-287 (313)
78 3v47_A TOLL-like receptor 5B a 98.6 2.5E-07 8.6E-12 81.3 11.4 131 35-188 276-409 (455)
79 3o53_A Protein LRIM1, AGAP0063 98.6 4.5E-08 1.5E-12 82.5 5.9 175 3-204 53-242 (317)
80 4eco_A Uncharacterized protein 98.6 1.2E-07 4.1E-12 87.5 8.5 185 6-204 247-462 (636)
81 4g8a_A TOLL-like receptor 4; l 98.6 1.7E-07 5.7E-12 85.3 9.4 135 32-190 50-188 (635)
82 2z63_A TOLL-like receptor 4, v 98.6 1E-07 3.5E-12 86.0 7.8 183 5-205 302-500 (570)
83 3oja_A Leucine-rich immune mol 98.6 9.4E-08 3.2E-12 85.5 7.2 185 7-204 33-242 (487)
84 2v70_A SLIT-2, SLIT homolog 2 98.6 8E-07 2.7E-11 71.0 11.8 130 33-185 31-164 (220)
85 2xot_A Amphoterin-induced prot 98.5 3.7E-07 1.3E-11 78.3 10.2 137 32-192 37-180 (361)
86 2z62_A TOLL-like receptor 4, v 98.5 3E-07 1E-11 75.6 8.9 83 32-123 26-110 (276)
87 1ziw_A TOLL-like receptor 3; i 98.5 7.5E-08 2.6E-12 89.0 5.8 164 3-192 425-601 (680)
88 1wwl_A Monocyte differentiatio 98.5 3.4E-07 1.1E-11 76.9 9.3 161 34-204 95-279 (312)
89 4ay9_X Follicle-stimulating ho 98.5 5E-07 1.7E-11 77.1 10.4 55 145-204 197-251 (350)
90 2ft3_A Biglycan; proteoglycan, 98.5 8.3E-07 2.8E-11 75.0 11.7 56 146-204 213-269 (332)
91 2o6s_A Variable lymphocyte rec 98.5 1.6E-06 5.6E-11 68.2 12.6 124 57-204 27-153 (208)
92 3rgz_A Protein brassinosteroid 98.5 1.4E-07 4.8E-12 88.8 7.1 146 34-193 394-557 (768)
93 2ell_A Acidic leucine-rich nuc 98.5 2.5E-07 8.6E-12 70.4 7.2 112 56-192 22-137 (168)
94 1jl5_A Outer protein YOPM; leu 98.5 2.7E-07 9.2E-12 81.8 8.4 136 34-192 131-274 (454)
95 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 6.7E-07 2.3E-11 81.0 10.1 80 89-185 427-508 (562)
96 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.4E-12 72.7 4.8 66 88-165 83-154 (176)
97 1ziw_A TOLL-like receptor 3; i 98.4 9.1E-07 3.1E-11 81.7 10.7 90 87-192 94-188 (680)
98 3g06_A SSPH2 (leucine-rich rep 98.4 6.9E-07 2.3E-11 82.3 9.8 106 88-204 179-289 (622)
99 1dce_A Protein (RAB geranylger 98.4 7.9E-07 2.7E-11 81.1 10.0 119 35-179 442-565 (567)
100 4ay9_X Follicle-stimulating ho 98.4 3.4E-06 1.2E-10 71.9 13.4 168 33-203 29-230 (350)
101 2je0_A Acidic leucine-rich nuc 98.4 3.1E-07 1.1E-11 68.4 5.3 112 56-192 15-130 (149)
102 4ecn_A Leucine-rich repeat pro 98.4 2.3E-06 7.8E-11 81.7 12.3 97 89-204 727-832 (876)
103 1jl5_A Outer protein YOPM; leu 98.4 7E-07 2.4E-11 79.2 7.9 75 34-123 173-247 (454)
104 3e4g_A ATP synthase subunit S, 98.4 1.8E-07 6.1E-12 72.4 3.5 87 91-190 62-155 (176)
105 3j0a_A TOLL-like receptor 5; m 98.4 1E-06 3.5E-11 83.8 9.1 105 8-123 24-133 (844)
106 3j0a_A TOLL-like receptor 5; m 98.4 1.7E-06 5.8E-11 82.2 10.4 132 32-184 22-158 (844)
107 4glp_A Monocyte differentiatio 98.3 4.9E-07 1.7E-11 75.8 5.6 161 34-204 91-277 (310)
108 2v9t_B SLIT homolog 2 protein 98.3 9.6E-06 3.3E-10 64.6 12.8 123 58-204 32-157 (220)
109 1a9n_A U2A', U2A'; complex (nu 98.3 7.2E-07 2.5E-11 68.5 5.8 115 54-193 15-131 (176)
110 2o6r_A Variable lymphocyte rec 98.3 5.1E-06 1.7E-10 63.6 10.5 105 58-185 28-135 (177)
111 3g06_A SSPH2 (leucine-rich rep 98.3 8.3E-07 2.8E-11 81.8 6.9 38 148-186 259-296 (622)
112 4g8a_A TOLL-like receptor 4; l 98.3 1.4E-06 4.8E-11 79.1 8.1 148 34-204 420-572 (635)
113 2o6r_A Variable lymphocyte rec 98.3 3.6E-06 1.2E-10 64.5 8.9 107 33-161 27-135 (177)
114 2ca6_A RAN GTPase-activating p 98.2 9.2E-08 3.1E-12 82.6 -0.8 38 147-185 241-285 (386)
115 2p1m_B Transport inhibitor res 98.2 2.8E-07 9.7E-12 83.5 1.8 111 6-123 103-221 (594)
116 3cvr_A Invasion plasmid antige 98.2 4.7E-06 1.6E-10 76.0 9.2 55 9-72 60-114 (571)
117 2p1m_B Transport inhibitor res 98.2 9.7E-08 3.3E-12 86.6 -2.5 107 6-120 128-242 (594)
118 4b8c_D Glucose-repressible alc 98.2 2.7E-06 9.1E-11 79.8 7.0 107 54-185 220-327 (727)
119 2ca6_A RAN GTPase-activating p 98.2 1.9E-07 6.3E-12 80.7 -0.9 37 148-185 272-314 (386)
120 3cvr_A Invasion plasmid antige 98.1 2.6E-06 9E-11 77.6 6.4 152 8-186 80-242 (571)
121 3ogk_B Coronatine-insensitive 98.1 1.1E-06 3.9E-11 79.5 3.8 41 147-189 485-527 (592)
122 2wfh_A SLIT homolog 2 protein 98.1 1.5E-05 5E-10 62.3 9.3 36 34-70 31-66 (193)
123 2xot_A Amphoterin-induced prot 98.1 3.1E-05 1E-09 66.3 11.8 112 58-193 39-154 (361)
124 2v70_A SLIT-2, SLIT homolog 2 98.1 3.7E-05 1.3E-09 61.1 11.5 124 58-204 32-158 (220)
125 2wfh_A SLIT homolog 2 protein 98.1 2.9E-05 1E-09 60.5 10.2 103 58-184 31-136 (193)
126 1ds9_A Outer arm dynein; leuci 98.1 1.9E-07 6.4E-12 73.3 -2.6 106 53-185 43-151 (198)
127 1w8a_A SLIT protein; signaling 98.1 3.7E-05 1.3E-09 59.8 10.6 34 88-122 52-87 (192)
128 1w8a_A SLIT protein; signaling 98.0 2.2E-05 7.6E-10 61.1 9.1 107 33-161 28-137 (192)
129 4b8c_D Glucose-repressible alc 98.0 1.5E-05 5E-10 74.7 7.9 103 34-161 224-327 (727)
130 2ra8_A Uncharacterized protein 98.0 4.1E-06 1.4E-10 72.1 3.8 14 55-68 169-182 (362)
131 1ds9_A Outer arm dynein; leuci 97.9 1.1E-06 3.6E-11 68.9 -0.3 104 34-161 48-151 (198)
132 1dce_A Protein (RAB geranylger 97.9 1.9E-05 6.4E-10 72.0 7.7 88 87-192 460-550 (567)
133 3ogk_B Coronatine-insensitive 97.9 2.3E-06 7.8E-11 77.6 1.5 60 6-68 162-230 (592)
134 1z7x_W Ribonuclease inhibitor; 97.8 3E-06 1E-10 74.4 0.1 85 90-185 313-409 (461)
135 1z7x_W Ribonuclease inhibitor; 97.7 4.8E-06 1.6E-10 73.1 0.1 40 148-189 225-270 (461)
136 2r9u_A Variable lymphocyte rec 97.7 0.0002 6.8E-09 54.8 9.3 80 90-184 33-115 (174)
137 3g39_A Variable lymphocyte rec 97.7 0.00021 7.1E-09 54.4 9.2 79 90-183 30-111 (170)
138 2ra8_A Uncharacterized protein 97.6 0.00012 4.1E-09 62.9 7.9 131 34-184 172-317 (362)
139 2r9u_A Variable lymphocyte rec 97.6 0.00019 6.6E-09 54.9 7.1 80 58-159 33-114 (174)
140 3sb4_A Hypothetical leucine ri 97.5 0.0011 3.8E-08 55.6 12.1 36 7-45 24-60 (329)
141 3goz_A Leucine-rich repeat-con 97.5 1.3E-05 4.3E-10 68.6 -0.2 35 150-185 225-264 (362)
142 3g39_A Variable lymphocyte rec 97.4 0.00032 1.1E-08 53.4 6.8 33 89-122 53-87 (170)
143 3sb4_A Hypothetical leucine ri 97.3 0.0023 7.9E-08 53.6 11.3 35 34-69 101-135 (329)
144 2ifg_A High affinity nerve gro 97.3 0.0008 2.7E-08 56.8 8.1 86 52-160 25-113 (347)
145 3goz_A Leucine-rich repeat-con 97.2 0.0001 3.6E-09 62.8 1.4 139 35-189 52-210 (362)
146 2ifg_A High affinity nerve gro 97.1 0.0022 7.4E-08 54.0 9.1 85 86-184 27-113 (347)
147 3un9_A NLR family member X1; l 96.3 0.00025 8.7E-09 61.0 -2.7 86 89-185 154-250 (372)
148 3un9_A NLR family member X1; l 96.1 0.00028 9.5E-09 60.8 -3.1 11 113-123 155-165 (372)
149 3rw6_A Nuclear RNA export fact 94.7 0.012 4.1E-07 48.3 2.0 34 88-122 168-205 (267)
150 4fdw_A Leucine rich hypothetic 93.6 0.59 2E-05 40.2 10.7 37 146-182 267-308 (401)
151 1io0_A Tropomodulin; LRR prote 92.7 0.029 9.8E-07 43.0 0.8 114 34-161 36-162 (185)
152 1io0_A Tropomodulin; LRR prote 91.4 0.025 8.7E-07 43.3 -0.9 116 54-184 32-161 (185)
153 4fdw_A Leucine rich hypothetic 89.4 3.2 0.00011 35.6 10.6 31 151-183 249-280 (401)
154 3rw6_A Nuclear RNA export fact 89.0 0.5 1.7E-05 38.5 4.9 92 55-159 167-260 (267)
155 4gt6_A Cell surface protein; l 79.9 8.9 0.0003 32.3 8.9 8 90-97 265-272 (394)
156 4fs7_A Uncharacterized protein 79.0 27 0.00093 29.2 12.1 8 199-206 366-373 (394)
157 4gt6_A Cell surface protein; l 57.7 54 0.0018 27.3 8.9 55 146-204 307-362 (394)
158 3rfe_A Platelet glycoprotein I 54.0 10 0.00035 26.8 3.1 35 58-100 31-65 (130)
159 4h09_A Hypothetical leucine ri 48.3 80 0.0027 25.9 8.4 19 148-168 308-326 (379)
160 4fs7_A Uncharacterized protein 43.7 63 0.0022 26.9 7.1 33 148-182 341-374 (394)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=4.7e-14 Score=120.28 Aligned_cols=209 Identities=16% Similarity=0.159 Sum_probs=121.0
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccc
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEV 81 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~ 81 (236)
++..+.+|++|+++..... .+.....-.++|+.|+++++.-..+ ...+..+++|+.|++++| .+..++.......
T Consensus 99 ~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 3556788888888754322 2222222236888888888854433 135778888888888887 4444422111000
Q ss_pred cccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccccccc---c--------cccccccccccc
Q 046682 82 KKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISVDKLR---D--------ISEIIGSEHNFF 149 (236)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~---~--------~~~~~~~~~~~~ 149 (236)
.......+++|+.|+++++ ++..++ .+..+++|++|++++|. +..++..-... . ..+.....+..+
T Consensus 175 ~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp -CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred chhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 0001122455555555554 343332 23445555555555442 22221100000 0 000000345678
Q ss_pred CcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEEechHHHHhhccCCc
Q 046682 150 AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIEGEKEWWEELQWED 218 (236)
Q Consensus 150 p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~w~~~l~w~~ 218 (236)
++|++|+++++..+..++.....+++|+.|++++|+.+..+|...... ++++.+.....+...+.+..
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQHR 320 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC-----
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHhhhh
Confidence 999999999999888888777789999999999999999999876654 78888887776666665543
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=3.2e-12 Score=108.86 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=127.7
Q ss_pred CcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682 7 LKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ 86 (236)
Q Consensus 7 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~ 86 (236)
..+++.|+++..... .+.....-.++|+.|+++++.-..++ ..+..+++|++|++++|.+..++ ...
T Consensus 80 ~~~l~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp---------~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---QFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALP---------ASI 146 (328)
T ss_dssp STTCCEEEEESSCCS---SCCSCGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCCC---------GGG
T ss_pred ccceeEEEccCCCch---hcChhhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccccCc---------HHH
Confidence 467888888754322 33332222479999999998654332 34789999999999999655552 234
Q ss_pred cCCCCccEEEEecCCCCCcchh-h---------hcccCccEEeEecccccceeccccccc---c--------cccccccc
Q 046682 87 SGFRSLDRVVISSCKKMKDLTW-L---------VFVQILKQLRIVFCTEMEEIISVDKLR---D--------ISEIIGSE 145 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~~-l---------~~lp~L~~L~i~~C~~L~~i~~~~~~~---~--------~~~~~~~~ 145 (236)
..+++|+.|++++|..+..++. + ..+++|++|+++++ .++.++..-... . ..+.. ..
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-~~ 224 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALG-PA 224 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCC-GG
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCc-hh
Confidence 5689999999999977776643 2 24999999999987 454443211110 0 00111 34
Q ss_pred ccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEEe
Q 046682 146 HNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVIE 205 (236)
Q Consensus 146 ~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 205 (236)
+..+++|++|+++++.....++.....+++|+.|++.+|..+..+|...... ++|+.+.
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~ 283 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL-TQLEKLD 283 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC-TTCCEEE
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC-CCCCEEe
Confidence 5678999999999988888887777789999999999999999999765443 5666553
No 3
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=5.7e-11 Score=93.62 Aligned_cols=130 Identities=15% Similarity=0.280 Sum_probs=67.5
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCc--chhhhc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD--LTWLVF 111 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~--l~~l~~ 111 (236)
++++.|+++++.-..+ +.+..+++|++|++++|.++.+ +....+++|+.|+++++ .+.. ...+..
T Consensus 44 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~n~~~~~----------~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~ 110 (197)
T 4ezg_A 44 NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY----------NPISGLSNLERLRIMGK-DVTSDKIPNLSG 110 (197)
T ss_dssp HTCCEEEEESSCCSCC--TTGGGCTTCSEEEEESCCCSCC----------GGGTTCTTCCEEEEECT-TCBGGGSCCCTT
T ss_pred CCccEEeccCCCccCh--HHHhcCCCCCEEEccCCCCCcc----------hhhhcCCCCCEEEeECC-ccCcccChhhcC
Confidence 4566666666533322 3455666666666666633322 12234566666666665 3443 233455
Q ss_pred ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682 112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP 191 (236)
Q Consensus 112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 191 (236)
+++|++|++++|. +..... ..+..+++|++|+++++..+..++ ....+++|+.|++.+| ++..+|
T Consensus 111 l~~L~~L~Ls~n~-i~~~~~------------~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~ 175 (197)
T 4ezg_A 111 LTSLTLLDISHSA-HDDSIL------------TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR 175 (197)
T ss_dssp CTTCCEEECCSSB-CBGGGH------------HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT
T ss_pred CCCCCEEEecCCc-cCcHhH------------HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH
Confidence 6666666666552 211100 133455666666666655444443 2334566666666665 344444
No 4
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=7.7e-11 Score=97.48 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=70.3
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVF 111 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~ 111 (236)
++|+.|++.++.-..+ ..+..+++|++|.+++|.+..+... ....+++|+.|+++++ ++..++. +..
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 131 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNG--------VFDKLTNLKELVLVEN-QLQSLPDGVFDK 131 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTT--------TTTTCTTCCEEECTTS-CCCCCCTTTTTT
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChh--------HhcCCcCCCEEECCCC-cCCccCHHHhcc
Confidence 5677777776643332 4556667777777777644433211 1234666777777666 4555433 455
Q ss_pred ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCCCc
Q 046682 112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKL 190 (236)
Q Consensus 112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~l 190 (236)
+++|++|++++| .+..+.. ..+..+++|++|+++++ ++..+.... ..+++|+.|.+++| ++..+
T Consensus 132 l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 196 (272)
T 3rfs_A 132 LTNLTYLNLAHN-QLQSLPK------------GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSV 196 (272)
T ss_dssp CTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred CCCCCEEECCCC-ccCccCH------------HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCcc
Confidence 667777777665 3433321 12334556666666554 244433322 23555666666555 34444
Q ss_pred CC
Q 046682 191 PV 192 (236)
Q Consensus 191 p~ 192 (236)
|.
T Consensus 197 ~~ 198 (272)
T 3rfs_A 197 PD 198 (272)
T ss_dssp CT
T ss_pred CH
Confidence 43
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.14 E-value=2.3e-10 Score=94.59 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=111.6
Q ss_pred cccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccc
Q 046682 2 KELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEV 81 (236)
Q Consensus 2 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~ 81 (236)
..+..+++|++|+++......+..+. . .++|+.|++.++.-..+....+..+++|++|++++|.+..+..
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~~l~---~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------ 126 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDISALK---E-LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD------ 126 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGGGT---T-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT------
T ss_pred cccccCCCCcEEECCCCCCCCchhhc---C-CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH------
Confidence 34667788888887644322233222 2 2689999999986444432346889999999999996655421
Q ss_pred cccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccc
Q 046682 82 KKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKW 159 (236)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 159 (236)
.....+++|+.|+++++ .+..++. +..+++|++|++++| .+..+.. ..+..+++|++|++++
T Consensus 127 --~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 127 --GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPE------------GVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp --TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCS
T ss_pred --HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCH------------HHhcCCccCCEEECCC
Confidence 12356899999999998 6777654 568999999999988 3444331 2346789999999987
Q ss_pred cccccccCCC-CCCCCCccEEeEeCCCC
Q 046682 160 GRNLKSVYPN-PLPLPKLKKIQVRGCPQ 186 (236)
Q Consensus 160 ~~~L~~i~~~-~~~~p~L~~L~i~~C~~ 186 (236)
+ .++.+... ...+++|+.|++.+++-
T Consensus 191 N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 191 N-QLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence 6 46666554 35689999999998753
No 6
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.14 E-value=2.9e-10 Score=91.98 Aligned_cols=137 Identities=14% Similarity=0.046 Sum_probs=60.7
Q ss_pred ccceEEEEeccC-CCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhc
Q 046682 34 SITQFVLVYHCK-SAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVF 111 (236)
Q Consensus 34 ~~L~~L~l~~c~-~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~ 111 (236)
++|+.|++.++. -..+....+..+++|++|++++| .++.+..+ ....+++|+.|++.++ .++.++.+..
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~--------~f~~l~~L~~L~l~~n-~l~~lp~~~~ 125 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD--------ALKELPLLKFLGIFNT-GLKMFPDLTK 125 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT--------SEECCTTCCEEEEEEE-CCCSCCCCTT
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH--------HhCCCCCCCEEeCCCC-CCcccccccc
Confidence 455555555553 22221123444555555555553 44433211 1123455566666555 3444443444
Q ss_pred ccCcc---EEeEecccccceeccccccccccccccccccccCccc-EEeccccccccccCCCCCCCCCccEEeEeCCCCC
Q 046682 112 VQILK---QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLE-SLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQL 187 (236)
Q Consensus 112 lp~L~---~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~-~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L 187 (236)
+++|+ +|+++++..++.+.. ..+..+++|+ .|++++. +++.++...+..++|+.|++.+++.+
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~------------~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPV------------NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYL 192 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECT------------TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTC
T ss_pred ccccccccEEECCCCcchhhcCc------------ccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCc
Confidence 44454 555555544444432 1223344444 5554432 23334333322344555555555444
Q ss_pred CCcCC
Q 046682 188 KKLPV 192 (236)
Q Consensus 188 ~~lp~ 192 (236)
+.+|.
T Consensus 193 ~~i~~ 197 (239)
T 2xwt_C 193 TVIDK 197 (239)
T ss_dssp CEECT
T ss_pred ccCCH
Confidence 44443
No 7
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.12 E-value=1.8e-10 Score=96.35 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=76.4
Q ss_pred cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccC
Q 046682 6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLF 85 (236)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~ 85 (236)
.+.+|+.|+++.+....++.+. ..++|+.|+++++.-..+ ..+..+++|+.|.+++|.+..+ +.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~----~l~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~----------~~ 107 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQ----YLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL----------SS 107 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGG----GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCG----------GG
T ss_pred hcCcccEEEccCCCcccChhHh----cCCCCCEEEccCCccCCC--cccccCCCCCEEECCCCcCCCC----------hh
Confidence 3455666655433222222211 125677777776643333 2256667777777766643332 11
Q ss_pred ccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccc--cc--------cccccccccccccCcccEE
Q 046682 86 QSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDK--LR--------DISEIIGSEHNFFAQLESL 155 (236)
Q Consensus 86 ~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~--~~--------~~~~~~~~~~~~~p~L~~L 155 (236)
...+++|+.|+++++ .+..++.+..+++|++|+++++. +..+..... .. ..... ..+..+++|+.|
T Consensus 108 l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~--~~l~~l~~L~~L 183 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 183 (291)
T ss_dssp GTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred hccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccc--hhhcCCCccCEE
Confidence 234555555555554 34444444455555555555442 222100000 00 00000 124566777777
Q ss_pred eccccccccccCCCCCCCCCccEEeEeCC
Q 046682 156 TIKWGRNLKSVYPNPLPLPKLKKIQVRGC 184 (236)
Q Consensus 156 ~l~~~~~L~~i~~~~~~~p~L~~L~i~~C 184 (236)
+++++ .++.++. ...+++|+.|++.++
T Consensus 184 ~L~~N-~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 184 YLSKN-HISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSS-CCCBCGG-GTTCTTCSEEEEEEE
T ss_pred ECCCC-cCCCChh-hccCCCCCEEECcCC
Confidence 77765 3444432 345778888888776
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.11 E-value=1.1e-10 Score=99.29 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=106.4
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK 83 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~ 83 (236)
+..+++|+.|+++......+..+. -.+.|+.+.+.++.-... ..+..+++|++|++++|.+..+.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~--------- 237 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLS--------- 237 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGGGG----GCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG---------
T ss_pred hccCCCCCEEEccCCccccccccc----CCCccceeecccCCCCCC--chhhcCCcCCEEEccCCccCCCc---------
Confidence 567788888887654333332222 236889999998854433 33778899999999998555432
Q ss_pred cCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682 84 LFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL 163 (236)
Q Consensus 84 ~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 163 (236)
....+++|+.|++++| .+..++.+..+++|++|++++| .+..+ ..+..+++|+.|+++++. +
T Consensus 238 -~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~~L~~L~L~~n~-l 299 (347)
T 4fmz_A 238 -PLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDI--------------SVLNNLSQLNSLFLNNNQ-L 299 (347)
T ss_dssp -GGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGGGCTTCSEEECCSSC-C
T ss_pred -chhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCC--------------hhhcCCCCCCEEECcCCc-C
Confidence 1356889999999888 6777777788899999999887 34433 134567888889888874 3
Q ss_pred cccC-CCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 164 KSVY-PNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 164 ~~i~-~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
.... .....+++|+.|++++|+ +..++.
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred CCcChhHhhccccCCEEEccCCc-cccccC
Confidence 3322 223457888999988886 555443
No 9
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=2.5e-10 Score=96.28 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=46.1
Q ss_pred cCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccccccc----------ccccccccccccCcccEEe
Q 046682 87 SGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRD----------ISEIIGSEHNFFAQLESLT 156 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~----------~~~~~~~~~~~~p~L~~L~ 156 (236)
..+++|+.|+++++ .+..++.+..+++|++|++++| .+..+........ .... ..+..+++|++|+
T Consensus 126 ~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 201 (308)
T 1h6u_A 126 AGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVH 201 (308)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEE
T ss_pred cCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCccCcC--hhhcCCCCCCEEE
Confidence 44566666666655 4555555556666666666655 2332221000000 0000 1234555666666
Q ss_pred ccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682 157 IKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP 191 (236)
Q Consensus 157 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 191 (236)
++++ .+..+.. ...+++|+.|.+.+++ +...|
T Consensus 202 L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 202 LKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred ccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence 6554 2333321 3346667777766653 34433
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.10 E-value=4.9e-10 Score=98.80 Aligned_cols=188 Identities=18% Similarity=0.199 Sum_probs=101.5
Q ss_pred ccccCcCCcceeEEeeehHHHH-HHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccc
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQ-KFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEV 81 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~ 81 (236)
.+..+.+|+.|+++......+. ..+ .. .++|+.|+++++.-..+....+..+++|++|+++++.+..+...
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~--~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----- 154 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAF--NG-LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY----- 154 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGG--TT-CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT-----
T ss_pred HhhCCCCCCEEECCCCcCCccChhhc--cC-CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH-----
Confidence 4667888888887643222111 111 11 26788888888754444323467778888888887755544221
Q ss_pred cccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccc----------ccccccccccccc
Q 046682 82 KKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLR----------DISEIIGSEHNFF 149 (236)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~~~~~~~~~~ 149 (236)
....+++|+.|++.+|..+..++. +..+++|++|+++++ +++.+....... .........+..+
T Consensus 155 ---~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 155 ---AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp ---TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred ---HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccChhhhccC
Confidence 123345555555555544444321 334455555555443 222221100000 0000001345677
Q ss_pred CcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 150 AQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 150 p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
++|+.|++.+. +++.+... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus 231 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 231 MHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp TTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred ccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence 88899988875 45555443 346889999999998 7888886543323455544
No 11
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.08 E-value=8e-10 Score=86.95 Aligned_cols=148 Identities=15% Similarity=0.199 Sum_probs=101.3
Q ss_pred cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccC
Q 046682 6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLF 85 (236)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~ 85 (236)
.+.+|+.|+++......++.+ ...++|+.|++.+|..... ..+..+++|++|++++|.+.... +..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~--------~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGI----EYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK--------IPN 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTG----GGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGG--------SCC
T ss_pred hcCCccEEeccCCCccChHHH----hcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCccc--------Chh
Confidence 456778888775433333322 2236899999999844333 56778899999999988544321 123
Q ss_pred ccCCCCccEEEEecCCCCCc--chhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682 86 QSGFRSLDRVVISSCKKMKD--LTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL 163 (236)
Q Consensus 86 ~~~l~~L~~L~i~~c~~l~~--l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 163 (236)
...+++|+.|+++++ .+.+ ...+..+++|++|++++|..+..+. .+..+++|++|+++++. +
T Consensus 108 l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--------------~l~~l~~L~~L~l~~n~-i 171 (197)
T 4ezg_A 108 LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM--------------PLKTLPELKSLNIQFDG-V 171 (197)
T ss_dssp CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--------------GGGGCSSCCEEECTTBC-C
T ss_pred hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH--------------hhcCCCCCCEEECCCCC-C
Confidence 456889999999887 5665 3456788999999999887565542 34578899999998764 4
Q ss_pred cccCCCCCCCCCccEEeEeCC
Q 046682 164 KSVYPNPLPLPKLKKIQVRGC 184 (236)
Q Consensus 164 ~~i~~~~~~~p~L~~L~i~~C 184 (236)
..+. ....+++|+.|++.+.
T Consensus 172 ~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 172 HDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCCT-TGGGCSSCCEEEECBC
T ss_pred cChH-HhccCCCCCEEEeeCc
Confidence 4444 3446788888888775
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.08 E-value=4e-10 Score=95.89 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=104.6
Q ss_pred cccCcCCcceeEEeeeh-HHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceee--------
Q 046682 4 LLGLKHLNVLSWSFGSS-LAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMK-------- 74 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~-~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~-------- 74 (236)
+..+++|+.|++..+.. ..+..+ . -.++|+.|.+.+|.-... ..+..+++|+.|++++|.+..+.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~---~-~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 201 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPL---S-NMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISPLASLTSL 201 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGG---T-TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECTTSCCCCCGGGGGCTTC
T ss_pred hccCCceeEEECCCCCCcccccch---h-hCCCCcEEEecCCCcCCc--hhhccCCCCCEEEccCCcccccccccCCCcc
Confidence 45667777777654311 111121 1 125788888887754333 33667778888888776333221
Q ss_pred ----ecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccC
Q 046682 75 ----IDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFA 150 (236)
Q Consensus 75 ----~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p 150 (236)
+....-........+++|+.|++++| .+..++.+..+++|++|++++| .+..+ ..+..++
T Consensus 202 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--------------~~~~~l~ 265 (347)
T 4fmz_A 202 HYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTN-QISDI--------------NAVKDLT 265 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC--------------GGGTTCT
T ss_pred ceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCC-ccCCC--------------hhHhcCC
Confidence 11100001122556889999999998 6777777889999999999987 34433 2355789
Q ss_pred cccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682 151 QLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP 191 (236)
Q Consensus 151 ~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 191 (236)
+|++|+++++ .+..+. ....+++|+.|++++|+ +...+
T Consensus 266 ~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~ 303 (347)
T 4fmz_A 266 KLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQ-LGNED 303 (347)
T ss_dssp TCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCGGG
T ss_pred CcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCc-CCCcC
Confidence 9999999987 455553 24568999999999994 44433
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.07 E-value=7.4e-10 Score=97.96 Aligned_cols=189 Identities=17% Similarity=0.152 Sum_probs=104.5
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccc
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVK 82 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~ 82 (236)
.+..+.+|+.|+++......+. .....-.++|+.|+++++.-..+....+..+++|++|+++++.++.+...
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------ 165 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY------ 165 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTT------
T ss_pred HcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHh------
Confidence 4567888888887643221111 01111126788888888754433223366778888888888755544321
Q ss_pred ccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccc----------cccccccccccccC
Q 046682 83 KLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLR----------DISEIIGSEHNFFA 150 (236)
Q Consensus 83 ~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~~~~~~~~~~p 150 (236)
....+++|+.|++.+|..+..++. +..+++|++|+++++ ++..+....... ...+.....+..++
T Consensus 166 --~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 242 (452)
T 3zyi_A 166 --AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242 (452)
T ss_dssp --TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred --HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCcc
Confidence 123455666666666555554432 344555666655544 222221100000 00001013456788
Q ss_pred cccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 151 QLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 151 ~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
+|+.|+++++. +..+.. ....+++|+.|+++++ +++.+|........+|+.+
T Consensus 243 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 243 SLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEE
T ss_pred CCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEE
Confidence 99999998753 455543 3446899999999998 7888886543323455544
No 14
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.06 E-value=2.8e-10 Score=95.25 Aligned_cols=139 Identities=19% Similarity=0.305 Sum_probs=96.6
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ 113 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp 113 (236)
+.|+.|.+.+|.-..+ +.+..+++|+.|++++|.+..+. ....+++|+.|+++++ .++.++.+..++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~----------~l~~l~~L~~L~l~~n-~l~~~~~l~~l~ 112 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK----------PLANLKNLGWLFLDEN-KVKDLSSLKDLK 112 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSS-CCCCGGGGTTCT
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCc----------ccccCCCCCEEECCCC-cCCCChhhccCC
Confidence 6789999999854444 56788999999999999665442 2457899999999988 688888888999
Q ss_pred CccEEeEecccccceecccccc--c--------cccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeC
Q 046682 114 ILKQLRIVFCTEMEEIISVDKL--R--------DISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRG 183 (236)
Q Consensus 114 ~L~~L~i~~C~~L~~i~~~~~~--~--------~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~ 183 (236)
+|++|++++|. +..+...... . ..... ..+..+++|+.|+++++ .++.+.. ...+++|+.|++++
T Consensus 113 ~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp TCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCC
Confidence 99999998873 4443211000 0 00001 24556778888888765 3444433 45678899999888
Q ss_pred CCCCCCcC
Q 046682 184 CPQLKKLP 191 (236)
Q Consensus 184 C~~L~~lp 191 (236)
+ +++.+|
T Consensus 188 N-~i~~l~ 194 (291)
T 1h6t_A 188 N-HISDLR 194 (291)
T ss_dssp S-CCCBCG
T ss_pred C-cCCCCh
Confidence 7 566554
No 15
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.05 E-value=3.1e-10 Score=104.34 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=80.2
Q ss_pred cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccC
Q 046682 6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLF 85 (236)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~ 85 (236)
.|.+|+.|++.......++.+ ...++|+.|.|++|.-..+ ..+..+++|+.|.+++|.+..+ +.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l----~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~l----------~~ 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDL----------SS 104 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTG----GGCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----------TT
T ss_pred cCCCCCEEECcCCCCCCChHH----ccCCCCCEEEeeCCCCCCC--hhhccCCCCCEEECcCCCCCCC----------hh
Confidence 455566666543322222222 1225777777777743333 3366677777777777644332 12
Q ss_pred ccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccc--cc--------cccccccccccccCcccEE
Q 046682 86 QSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDK--LR--------DISEIIGSEHNFFAQLESL 155 (236)
Q Consensus 86 ~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~--~~--------~~~~~~~~~~~~~p~L~~L 155 (236)
...+++|+.|+++++ .+..++.+..+++|+.|+|++|. +..+..... .. ..... ..+..+++|+.|
T Consensus 105 l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L 180 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNL 180 (605)
T ss_dssp STTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred hccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCc--hhhccCCCCCEE
Confidence 234555555555555 34444445555555555555442 222100000 00 00000 124567788888
Q ss_pred eccccccccccCCCCCCCCCccEEeEeCCC
Q 046682 156 TIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 156 ~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 185 (236)
.|+++ .+..++ ....+++|+.|.+.+|+
T Consensus 181 ~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 181 YLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred ECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 88765 344442 23457888888888773
No 16
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.04 E-value=6.4e-10 Score=93.70 Aligned_cols=149 Identities=16% Similarity=0.148 Sum_probs=80.5
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceee--------
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMK-------- 74 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~-------- 74 (236)
.+..+.+|+.|+++......+..+ .. .++|+.|+++++.-..+ +.+..+++|+.|.+++|.+..+.
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~~---~~-l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L 131 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAPL---KN-LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGG---TT-CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGGGTTCTTC
T ss_pred hhhccCCCCEEEccCCcCCCChhH---cc-CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCchhhcCCCCC
Confidence 455667777777764433223222 11 25677777776643322 34555666666666655222221
Q ss_pred ----ecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccc----------cccc
Q 046682 75 ----IDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLR----------DISE 140 (236)
Q Consensus 75 ----~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~ 140 (236)
+....-...+....+++|+.|+++++ .+.+++.+..+++|++|+++++. +..+....... ....
T Consensus 132 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCCCB
T ss_pred CEEECCCCccCcCccccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCccCc
Confidence 11110011122456778888888877 67777667778888888887653 33332110000 0001
Q ss_pred cccccccccCcccEEeccccc
Q 046682 141 IIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 141 ~~~~~~~~~p~L~~L~l~~~~ 161 (236)
. ..+..+++|+.|++++.+
T Consensus 210 ~--~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 210 V--SPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp C--GGGTTCTTCCEEEEEEEE
T ss_pred c--ccccCCCCCCEEEccCCe
Confidence 1 245678899999998765
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.03 E-value=9.9e-10 Score=91.11 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=52.4
Q ss_pred CCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccc
Q 046682 88 GFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKS 165 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 165 (236)
.+++|+.|+++++ .+..++. +..+++|++|+++++ .++.+.. ..+..+++|++|++++.. +..
T Consensus 127 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~------------~~~~~l~~L~~L~l~~n~-l~~ 191 (285)
T 1ozn_A 127 GLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE------------RAFRGLHSLDRLLLHQNR-VAH 191 (285)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT------------TTTTTCTTCCEEECCSSC-CCE
T ss_pred CCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH------------HHhcCccccCEEECCCCc-ccc
Confidence 4555666666554 3444332 345566666666554 2333221 235567888888888764 444
Q ss_pred c-CCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 166 V-YPNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 166 i-~~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
+ +.....+++|+.|+++++ +++.+|.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 218 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFAN-NLSALPT 218 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCSCCCH
T ss_pred cCHhHccCcccccEeeCCCC-cCCcCCH
Confidence 4 333456788999999887 6666663
No 18
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=5.2e-10 Score=102.83 Aligned_cols=139 Identities=19% Similarity=0.308 Sum_probs=93.7
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ 113 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp 113 (236)
..|+.|.+.++.-..+ +.+..+++|+.|.+++|.+..+. +...+++|+.|++++| .+..++.+..++
T Consensus 43 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~----------~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~ 109 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK----------PLTNLKNLGWLFLDEN-KIKDLSSLKDLK 109 (605)
T ss_dssp TTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCG----------GGGGCTTCCEEECCSS-CCCCCTTSTTCT
T ss_pred CCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCCh----------hhccCCCCCEEECcCC-CCCCChhhccCC
Confidence 5788888888854444 56888999999999999665442 2456899999999998 688888888999
Q ss_pred CccEEeEecccccceecccccc--c--------cccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeC
Q 046682 114 ILKQLRIVFCTEMEEIISVDKL--R--------DISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRG 183 (236)
Q Consensus 114 ~L~~L~i~~C~~L~~i~~~~~~--~--------~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~ 183 (236)
+|+.|++++|. +..+...... . ..... ..+..+++|+.|.|+++ .+..+.. ...+++|+.|.+++
T Consensus 110 ~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 110 KLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp TCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcC
Confidence 99999998874 3333210000 0 00001 24556777788877765 3444332 44678888888888
Q ss_pred CCCCCCcC
Q 046682 184 CPQLKKLP 191 (236)
Q Consensus 184 C~~L~~lp 191 (236)
| ++..+|
T Consensus 185 N-~i~~l~ 191 (605)
T 1m9s_A 185 N-HISDLR 191 (605)
T ss_dssp S-CCCBCG
T ss_pred C-CCCCCh
Confidence 7 444443
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.00 E-value=1.9e-09 Score=94.95 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=109.8
Q ss_pred cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCcc
Q 046682 8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQS 87 (236)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~ 87 (236)
.+++.|+++......+.. ....-.++|+.|+++++.-..+....+..+++|+.|+++++.+..+..+ ...
T Consensus 64 ~~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~ 133 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKV--NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG--------AFV 133 (440)
T ss_dssp TTCSEEECCSCCCCEECT--TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT--------TSC
T ss_pred CCCcEEEccCCcCCeeCH--HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh--------Hhh
Confidence 456777766432221110 1111237899999999864444334578899999999999966655321 235
Q ss_pred CCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccc----ccc--------ccccccccccccCccc
Q 046682 88 GFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDK----LRD--------ISEIIGSEHNFFAQLE 153 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~----~~~--------~~~~~~~~~~~~p~L~ 153 (236)
.+++|+.|+++++ .+..++. +..+++|++|++.+|..+..+....- ... .... ..+..+++|+
T Consensus 134 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 210 (440)
T 3zyj_A 134 YLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLD 210 (440)
T ss_dssp SCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCC
T ss_pred ccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccC
Confidence 6899999999987 5776643 56899999999999888877653110 000 0001 2344556677
Q ss_pred EEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 154 SLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 154 ~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.|+++++ .++.+.. ....+++|+.|.+.++ +++.++.......++|+.+
T Consensus 211 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 211 ELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEE
T ss_pred EEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEE
Confidence 7777665 4444433 2345677777777776 4555543322222444444
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.99 E-value=1.8e-09 Score=89.00 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=107.0
Q ss_pred cCCcceeEEeeehHHHHHHhc-CCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682 8 KHLNVLSWSFGSSLAVQKFLK-YPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ 86 (236)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~-~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~ 86 (236)
.+|+.|+++..... .+.. ...-.++|+.|++.++.-..+....+..+++|++|+++++.+..+... ..
T Consensus 37 ~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~ 105 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG--------VF 105 (270)
T ss_dssp TTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT--------TT
T ss_pred CCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh--------Hc
Confidence 35777776643322 2211 111236899999988854444323357789999999998866554321 22
Q ss_pred cCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682 87 SGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK 164 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 164 (236)
..+++|+.|+++++ .+..++. +..+++|++|+++++ .++.+.. ..+..+++|++|+++++ .++
T Consensus 106 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~L~~n-~l~ 170 (270)
T 2o6q_A 106 DQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK------------GVFDKLTSLKELRLYNN-QLK 170 (270)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCS
T ss_pred ccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCH------------hHccCCcccceeEecCC-cCc
Confidence 45788999999887 5666543 467889999999876 3443331 13456788888888765 455
Q ss_pred ccCCC-CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 165 SVYPN-PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 165 ~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.++.. ...+++|+.|+++++ +++.+|.......++|+.+
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred EeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEE
Confidence 55543 335788888888887 6777776533222445444
No 21
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.99 E-value=2.6e-09 Score=86.38 Aligned_cols=173 Identities=11% Similarity=0.051 Sum_probs=117.3
Q ss_pred ccccCcCCcceeEEeee-hHHHHHHhcCCcccccceEEEEeccCC-CCccccchhhcccCCceeecCCccceeeeccccc
Q 046682 3 ELLGLKHLNVLSWSFGS-SLAVQKFLKYPKLVSITQFVLVYHCKS-APFNLLHLAYMENLQELDLEDINLEEMKIDSTEE 80 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~l~~c~~-~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~ 80 (236)
.+..+++|+.|++.... ...+..- ...-.++|+.|++.+|.. ..+....+..+++|+.|++++|.++.++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp------ 121 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP------ 121 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC------
T ss_pred HccCCCCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc------
Confidence 35678889999887543 2222110 111236899999998644 3332234678899999999998655442
Q ss_pred ccccCccCCCCcc---EEEEecCCCCCcchh--hhcccCcc-EEeEecccccceeccccccccccccccccccccCcccE
Q 046682 81 VKKLFQSGFRSLD---RVVISSCKKMKDLTW--LVFVQILK-QLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLES 154 (236)
Q Consensus 81 ~~~~~~~~l~~L~---~L~i~~c~~l~~l~~--l~~lp~L~-~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~ 154 (236)
....+++|+ .|++++++.++.++. +..+++|+ +|+++++ .++.+.. ..... ++|+.
T Consensus 122 ----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~------------~~~~~-~~L~~ 183 (239)
T 2xwt_C 122 ----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG------------YAFNG-TKLDA 183 (239)
T ss_dssp ----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT------------TTTTT-CEEEE
T ss_pred ----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH------------hhcCC-CCCCE
Confidence 123466666 999999877887753 56789999 9999876 4555432 11223 78999
Q ss_pred EeccccccccccCCCC-CCC-CCccEEeEeCCCCCCCcCCCCCCCCCcceEEe
Q 046682 155 LTIKWGRNLKSVYPNP-LPL-PKLKKIQVRGCPQLKKLPVNSSSVKERRVVIE 205 (236)
Q Consensus 155 L~l~~~~~L~~i~~~~-~~~-p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~ 205 (236)
|++.+++.++.++... ..+ ++|+.|+++++ +++.+|... .++++.+.
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~---~~~L~~L~ 232 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKG---LEHLKELI 232 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTT---CTTCSEEE
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhH---hccCceee
Confidence 9999988888887653 356 89999999995 788888762 24555443
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.99 E-value=3e-09 Score=88.86 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=103.2
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccc
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVK 82 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~ 82 (236)
+++++.+|+.++++.. .+..+.. .+++.++.|+++++.-..+....+..+++|+.|.++++.+..+...
T Consensus 5 ~~~~l~~l~~l~~~~~---~l~~ip~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------ 73 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKR---NLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------ 73 (290)
T ss_dssp EEECSTTCCEEECTTS---CCSSCCS--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC------
T ss_pred cccccCCccEEECCCC---CCCcCCC--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC------
Confidence 4566777777776532 2333322 2347899999998865444334577889999999998866555321
Q ss_pred ccCccCCCCccEEEEecCCCCCcchh-hhcccCccEEeEecccccceecccc-cc---cc--------cccccccccccc
Q 046682 83 KLFQSGFRSLDRVVISSCKKMKDLTW-LVFVQILKQLRIVFCTEMEEIISVD-KL---RD--------ISEIIGSEHNFF 149 (236)
Q Consensus 83 ~~~~~~l~~L~~L~i~~c~~l~~l~~-l~~lp~L~~L~i~~C~~L~~i~~~~-~~---~~--------~~~~~~~~~~~~ 149 (236)
..+++|+.|+++++ .+..++. +..+++|++|+++++ .++.+.... .. .. ........+..+
T Consensus 74 ----~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 147 (290)
T 1p9a_G 74 ----GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147 (290)
T ss_dssp ----SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ----CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc
Confidence 23455555555544 3444332 234455555555443 222221100 00 00 000000234567
Q ss_pred CcccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 150 AQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 150 p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
++|+.|++++. +++.++.+. ..+++|+.|.++++ +++.+|.+.... ..|+.+
T Consensus 148 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~-~~L~~l 200 (290)
T 1p9a_G 148 PKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-HLLPFA 200 (290)
T ss_dssp TTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CCCSEE
T ss_pred cCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhccc-ccCCeE
Confidence 88999999865 466776654 35889999999887 678888765443 344433
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.98 E-value=1.8e-09 Score=93.55 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=58.2
Q ss_pred CCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc-cc---cc--------ccccccccccccCcccEEe
Q 046682 89 FRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD-KL---RD--------ISEIIGSEHNFFAQLESLT 156 (236)
Q Consensus 89 l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~-~~---~~--------~~~~~~~~~~~~p~L~~L~ 156 (236)
+++|+.|++.++ .+...+++..+++|++|+++++. +..+.... .. .. ..... .....+|+|++|+
T Consensus 225 ~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 225 NVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLD 301 (390)
T ss_dssp CSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEE-CSSSCCTTCCEEE
T ss_pred cccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccC-cccCCCCCCCEEE
Confidence 345666666665 45566667778888888887763 33332110 00 00 00000 1234566777777
Q ss_pred ccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 157 IKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 157 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
++++ .+..++.....+++|+.|++.+++ +..+|.... ++|+.+
T Consensus 302 L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~---~~L~~L 344 (390)
T 3o6n_A 302 LSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH---HTLKNL 344 (390)
T ss_dssp CCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTT---CCCSEE
T ss_pred CCCC-cceecCccccccCcCCEEECCCCc-cceeCchhh---ccCCEE
Confidence 7665 445554434456777777777763 566664332 445544
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.97 E-value=2.5e-09 Score=94.96 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=86.6
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccc--
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEE-- 80 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~-- 80 (236)
.+..+.+|++|+++......+. .....-.++|+.|++.++.-..+....+..+++|++|+++++.+..+.......
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred HccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 4566778888887632211110 011111257888888877543332233567788888888776443331111000
Q ss_pred ------------c--cccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccc
Q 046682 81 ------------V--KKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGS 144 (236)
Q Consensus 81 ------------~--~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~ 144 (236)
. .+.....+++|+.|++.++ ++..++. +..+++|+.|++.++. +..+.. .
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~------------~ 194 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRD------------Y 194 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECT------------T
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeCh------------h
Confidence 0 0112234455555555555 3444331 3455555555555442 222211 2
Q ss_pred cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcC
Q 046682 145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLP 191 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp 191 (236)
.+..+++|+.|++++++.+..++......++|+.|++.+| +++.+|
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~ 240 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVP 240 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCC
T ss_pred hcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccC
Confidence 3456677777777777666666554444445666665555 344443
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.97 E-value=3.9e-09 Score=80.67 Aligned_cols=136 Identities=17% Similarity=0.161 Sum_probs=98.4
Q ss_pred ccccceEEEEeccCCC--CccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCc-chh
Q 046682 32 LVSITQFVLVYHCKSA--PFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD-LTW 108 (236)
Q Consensus 32 l~~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-l~~ 108 (236)
.++.++.|++.+|.-. .++ ..+..+++|+.|++++|.+..+ . ....+++|+.|+++++ .+.. ++.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~N-~l~~~~~~ 89 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--S--------NLPKLPKLKKLELSEN-RIFGGLDM 89 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--S--------SCCCCSSCCEEEEESC-CCCSCCCH
T ss_pred CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--h--------hhccCCCCCEEECcCC-cCchHHHH
Confidence 3478999999999643 331 2358899999999999966544 1 2356899999999998 5666 544
Q ss_pred h-hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC----CCCCCCCccEEeEeC
Q 046682 109 L-VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP----NPLPLPKLKKIQVRG 183 (236)
Q Consensus 109 l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~----~~~~~p~L~~L~i~~ 183 (236)
. ..+++|++|+++++ .++.+... ..+..+++|+.|++++++ +..++. ....+|+|+.|++.+
T Consensus 90 ~~~~l~~L~~L~Ls~N-~l~~~~~~-----------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGN-KLKDISTL-----------EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp HHHHCTTCCEEECBSS-SCCSSGGG-----------GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred HHhhCCCCCEEeccCC-ccCcchhH-----------HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence 3 45999999999988 45443210 245578999999998863 455543 244689999999999
Q ss_pred CCCCCCcCCC
Q 046682 184 CPQLKKLPVN 193 (236)
Q Consensus 184 C~~L~~lp~~ 193 (236)
| .+..+|..
T Consensus 157 n-~~~~~~~~ 165 (168)
T 2ell_A 157 R-EDQEAPDS 165 (168)
T ss_dssp T-TSCBCCSS
T ss_pred C-Chhhcccc
Confidence 9 45666654
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.96 E-value=1.8e-10 Score=97.59 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=63.9
Q ss_pred ccCcCCcceeEEeeeh--HHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccc
Q 046682 5 LGLKHLNVLSWSFGSS--LAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEV 81 (236)
Q Consensus 5 ~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~ 81 (236)
..+.+|+.|+++.+.. ..+...+... ++|+.|++.+|.-.......+..+++|++|++++| .+....+.
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~---~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~----- 161 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ----- 161 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTB---CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-----
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhC---CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-----
Confidence 3457777777654332 2244444332 57888888887432111133566788888888888 66531110
Q ss_pred cccCccCCCCccEEEEecCCCCCcc--h-hhhccc-CccEEeEeccc
Q 046682 82 KKLFQSGFRSLDRVVISSCKKMKDL--T-WLVFVQ-ILKQLRIVFCT 124 (236)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~c~~l~~l--~-~l~~lp-~L~~L~i~~C~ 124 (236)
.....+++|+.|++++|..+.+. + .+..+| +|++|++++|.
T Consensus 162 --~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 162 --TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp --HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred --HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 11234677777777777666642 2 245677 77777777774
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.96 E-value=5.5e-09 Score=92.72 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=19.6
Q ss_pred ccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682 146 HNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 146 ~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 185 (236)
+..+++|++|+++++ .+..+. ....+++|+.|++++|+
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 345566666666654 333331 22345566666666653
No 28
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.96 E-value=1.2e-08 Score=83.19 Aligned_cols=149 Identities=14% Similarity=0.139 Sum_probs=101.3
Q ss_pred ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682 32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL 109 (236)
Q Consensus 32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l 109 (236)
++..++.|.+.++.-..+....+..+++|++|+++++.+..+.. .....+++|+.|+++++ ++..++ .+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 103 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--------GVFDDLTELGTLGLANN-QLASLPLGVF 103 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH--------hHhccCCcCCEEECCCC-cccccChhHh
Confidence 34689999999886544433457888999999999986655421 12356789999999887 576664 34
Q ss_pred hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCC
Q 046682 110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLK 188 (236)
Q Consensus 110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~ 188 (236)
..+++|++|+++++ .++.+.. ..+..+++|++|++++. +++.++.. ...+++|+.|+++++ +++
T Consensus 104 ~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 168 (251)
T 3m19_A 104 DHLTQLDKLYLGGN-QLKSLPS------------GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQ 168 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCS
T ss_pred cccCCCCEEEcCCC-cCCCcCh------------hHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCC
Confidence 67889999999876 4544431 13456788899988875 56666653 346788899988887 666
Q ss_pred CcCCCCCCCCCcceEE
Q 046682 189 KLPVNSSSVKERRVVI 204 (236)
Q Consensus 189 ~lp~~~~~~~~~l~~~ 204 (236)
.+|........+|+.+
T Consensus 169 ~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CCCTTTTTTCTTCCEE
T ss_pred ccCHHHHhCCCCCCEE
Confidence 7765332222445444
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.96 E-value=1.9e-09 Score=95.28 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=103.9
Q ss_pred cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCcc
Q 046682 8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQS 87 (236)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~ 87 (236)
.+|+.|+++......+. .....-.++|+.|+++++.-..+....+..+++|+.|+++++.+..+..+ ...
T Consensus 75 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG--------AFE 144 (452)
T ss_dssp TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT--------TSS
T ss_pred CCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh--------hhc
Confidence 46777777643222110 01111237899999999854444334578899999999999966655321 235
Q ss_pred CCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccc----ccc--------ccccccccccccCccc
Q 046682 88 GFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDK----LRD--------ISEIIGSEHNFFAQLE 153 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~----~~~--------~~~~~~~~~~~~p~L~ 153 (236)
.+++|+.|+++++ .+..++. +..+++|++|++++|..+..+....- ... .... ..+..+++|+
T Consensus 145 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 221 (452)
T 3zyi_A 145 YLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLE 221 (452)
T ss_dssp SCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCC
T ss_pred ccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--cccccccccc
Confidence 6899999999988 5776653 56899999999999988887753210 000 0000 2344556666
Q ss_pred EEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcC
Q 046682 154 SLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLP 191 (236)
Q Consensus 154 ~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp 191 (236)
.|++++.. +..+.. ....+++|+.|.+.++ ++..++
T Consensus 222 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~ 258 (452)
T 3zyi_A 222 ELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLIE 258 (452)
T ss_dssp EEECTTSC-CSEECGGGGTTCTTCCEEECTTS-CCCEEC
T ss_pred EEECcCCc-CcccCcccccCccCCCEEEeCCC-cCceEC
Confidence 66666542 333322 2345677777777776 344443
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.95 E-value=9.6e-09 Score=91.15 Aligned_cols=176 Identities=16% Similarity=0.145 Sum_probs=95.5
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK 83 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~ 83 (236)
+..+.+|+.|++.......+. .....-.++|+.|++.++.-..+....+..+++|+.|.++++.+..+...
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~------- 194 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY------- 194 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-------
T ss_pred ccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-------
Confidence 556778888887632211110 00111125788888888754433223356777888888877644433211
Q ss_pred cCccCCCCccEEEEecCCC-----------------------CCcch--hhhcccCccEEeEecccccceeccccccccc
Q 046682 84 LFQSGFRSLDRVVISSCKK-----------------------MKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDI 138 (236)
Q Consensus 84 ~~~~~l~~L~~L~i~~c~~-----------------------l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~ 138 (236)
....+++|+.|++.+|.. ++.++ .+..+++|++|+++++. +..+..
T Consensus 195 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------- 265 (477)
T 2id5_A 195 -SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG------- 265 (477)
T ss_dssp -CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-------
T ss_pred -hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh-------
Confidence 122344455555544443 43333 13345555555555442 222221
Q ss_pred cccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 139 SEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 139 ~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
..+..+++|+.|.+.++ ++..+.. ....+++|+.|+++++ +++.+|.......++|+.+
T Consensus 266 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 266 -----SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp -----TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred -----hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEE
Confidence 24557788999998875 3455533 3446889999999988 7777776432222444443
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.94 E-value=1.6e-08 Score=83.24 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=60.2
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVF 111 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~ 111 (236)
++|+.|.+.++.-..+....+..+++|++|.++++.+..+.. .....+++|+.|+++++ .+..++. +..
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 155 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--------RVFDSLTKLTYLSLGYN-ELQSLPKGVFDK 155 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH--------HHhCcCcCCCEEECCCC-cCCccCHhHccC
Confidence 455666665553322221234455566666666554333311 11234556666666555 3444432 345
Q ss_pred ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCC
Q 046682 112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGC 184 (236)
Q Consensus 112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C 184 (236)
+++|++|+++++ .++.+.. ..+..+++|++|+++++ .++.++.. ...+++|+.|.+.+.
T Consensus 156 l~~L~~L~L~~n-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 156 LTSLKELRLYNN-QLKRVPE------------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccceeEecCC-cCcEeCh------------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 556666666554 2222211 12334556666666554 34444432 223555666655554
No 32
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.94 E-value=2e-09 Score=88.77 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=89.1
Q ss_pred ccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccccc
Q 046682 5 LGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKL 84 (236)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~ 84 (236)
..+.+|+.|+++......++.+. -.++|+.|+++++.-..+ +.+..+++|+.|++++|.+..+.
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~----~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~L~~N~l~~l~---------- 101 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQ----FFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLN---------- 101 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGG----GCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCSCCT----------
T ss_pred hhcCcCcEEECcCCCcccchHHh----hCCCCCEEECCCCccCCC--hhhccCCCCCEEECCCCccCCcC----------
Confidence 34455666655433222222111 125677777776643333 22666777777777777544331
Q ss_pred CccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682 85 FQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK 164 (236)
Q Consensus 85 ~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 164 (236)
.... ++|+.|+++++ +++.++.+..+++|++|+++++. ++.+ ..+..+++|+.|+++++ .+.
T Consensus 102 ~~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~~--------------~~l~~l~~L~~L~L~~N-~i~ 163 (263)
T 1xeu_A 102 GIPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNK-LKSI--------------VMLGFLSKLEVLDLHGN-EIT 163 (263)
T ss_dssp TCCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSC-CCBC--------------GGGGGCTTCCEEECTTS-CCC
T ss_pred cccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCCc-CCCC--------------hHHccCCCCCEEECCCC-cCc
Confidence 1122 77888888877 67777667778888888887653 4332 13457889999999875 344
Q ss_pred ccCCCCCCCCCccEEeEeCCC
Q 046682 165 SVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 165 ~i~~~~~~~p~L~~L~i~~C~ 185 (236)
.+ .....+++|+.|++++++
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEE
T ss_pred ch-HHhccCCCCCEEeCCCCc
Confidence 44 334568899999998874
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.92 E-value=3.6e-09 Score=93.86 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=88.4
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK 83 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~ 83 (236)
+..+.+|+.|++.......+..+.. .++|+.|++.+|.-... ..+..+++|+.|.+++|.+..+.
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--------- 281 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNIS--------- 281 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGG----CTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG---------
T ss_pred ccccCCCCEEECCCCCcccchhhhc----CCCCCEEECCCCccccc--hhhhcCCCCCEEECCCCccCccc---------
Confidence 4456777777776443322222221 25778888887754333 33666777777777776333221
Q ss_pred cCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccc----------cccccccccccccCccc
Q 046682 84 LFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLR----------DISEIIGSEHNFFAQLE 153 (236)
Q Consensus 84 ~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~~~~~~~~~~p~L~ 153 (236)
....+++|+.|++++| ++..++.+..+++|++|++++|. +..+....... ...+. ..+..+++|+
T Consensus 282 -~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 356 (466)
T 1o6v_A 282 -PLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 356 (466)
T ss_dssp -GGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred -cccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence 1223444555555444 34444334444445555444442 22211100000 00000 2456789999
Q ss_pred EEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 154 SLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 154 ~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
.|+++++. +..+.. ...+++|+.|.+.+|+ +..+|.
T Consensus 357 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 357 WLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp EEECCSSC-CCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred EEeCCCCc-cCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence 99999875 444433 5678999999999983 444443
No 34
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.88 E-value=3.7e-09 Score=89.20 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=46.3
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKK 83 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~ 83 (236)
+..+.+|++|+++..... .+. ..+.|+.|.+.++.-..+. ...+++|+.|+++++.+..+..
T Consensus 76 ~~~l~~L~~L~Ls~n~l~---~l~----~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~N~l~~~~~-------- 137 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQ---ELL----VGPSIETLHAANNNISRVS---CSRGQGKKNIYLANNKITMLRD-------- 137 (317)
T ss_dssp ETTCTTCCEEECCSSEEE---EEE----ECTTCCEEECCSSCCSEEE---ECCCSSCEEEECCSSCCCSGGG--------
T ss_pred hhhcCCCCEEECcCCccc---ccc----CCCCcCEEECCCCccCCcC---ccccCCCCEEECCCCCCCCccc--------
Confidence 456677777776643211 111 1146666666665322211 1234556666666653332211
Q ss_pred cCccCCCCccEEEEecCCCCCcch--hh-hcccCccEEeEecc
Q 046682 84 LFQSGFRSLDRVVISSCKKMKDLT--WL-VFVQILKQLRIVFC 123 (236)
Q Consensus 84 ~~~~~l~~L~~L~i~~c~~l~~l~--~l-~~lp~L~~L~i~~C 123 (236)
.....+++|+.|+++++ .+..+. .+ ..+++|++|+++++
T Consensus 138 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC
Confidence 01223455555555554 343321 11 23455555555544
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.86 E-value=9e-09 Score=89.07 Aligned_cols=35 Identities=14% Similarity=-0.086 Sum_probs=15.2
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCC
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI 68 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c 68 (236)
++|+.|++.++.-..+....+..+++|++|++++|
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 34455555444322221122344555555555554
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.85 E-value=5.5e-09 Score=87.39 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=99.2
Q ss_pred cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccc-cchhhcccCCceeecCCccceeeeccccccccc
Q 046682 6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNL-LHLAYMENLQELDLEDINLEEMKIDSTEEVKKL 84 (236)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~-~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~ 84 (236)
.+.+|++|+++......+ .....-.++|+.|++.++.-..... ..+..+++|+.|.+++|.+..+.. .
T Consensus 76 ~~~~L~~L~Ls~n~i~~l---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~ 144 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------G 144 (306)
T ss_dssp SCSCCCEEECCSCSEEEE---EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--------T
T ss_pred cccccCEEECCCCccccC---hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--------h
Confidence 467888888764322211 1111113689999998875433321 346788999999999885443321 1
Q ss_pred CccCCCCccEEEEecCCCCCc--c-hhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 85 FQSGFRSLDRVVISSCKKMKD--L-TWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 85 ~~~~l~~L~~L~i~~c~~l~~--l-~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
....+++|+.|+++++ .+.. + ..+..+++|++|+++++ .++.+.. ..+..+++|++|+++++.
T Consensus 145 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP------------TAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTSC
T ss_pred hcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCH------------HHhcCCCCCCEEECCCCc
Confidence 2345788999999887 3443 2 23567889999999887 3444421 245577889999998754
Q ss_pred cccccCC-CCCCCCCccEEeEeCCCC
Q 046682 162 NLKSVYP-NPLPLPKLKKIQVRGCPQ 186 (236)
Q Consensus 162 ~L~~i~~-~~~~~p~L~~L~i~~C~~ 186 (236)
+..+.. ....+++|+.|+++++.-
T Consensus 211 -l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 211 -FFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp -CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred -cCccChhhccCcccCCEeECCCCCC
Confidence 444443 234578899999998843
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.85 E-value=4.3e-08 Score=86.21 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=40.6
Q ss_pred cccccCcccEEeccccccccccC-CCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 145 EHNFFAQLESLTIKWGRNLKSVY-PNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.+..+++|++|+++++ .+..+. .....+++|++|+++++ +++.+|.......++|+.+
T Consensus 342 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 342 MFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp GGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred HhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence 4567889999999876 345553 34557899999999997 7888887543323555554
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.84 E-value=4e-08 Score=81.31 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=77.9
Q ss_pred cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhh
Q 046682 33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLV 110 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~ 110 (236)
++.++.|++.++.-..+....+..+++|++|.++++.+..+.. .....+++|+.|+++++..+..+. .+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--------AAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--------TTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH--------hhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 3566666666664333322235566666666666664443311 112334555555555553344431 233
Q ss_pred cccCccEEeEecccccceecccc----cccc--------ccccccccccccCcccEEeccccccccccCCC-CCCCCCcc
Q 046682 111 FVQILKQLRIVFCTEMEEIISVD----KLRD--------ISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLK 177 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~----~~~~--------~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~ 177 (236)
.+++|++|+++++. +..+.... .... ........+..+++|++|+++++ +++.++.. ...+++|+
T Consensus 103 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 103 GLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLD 180 (285)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccC
Confidence 45555555555442 22211100 0000 00000023456788888888765 46666553 34578888
Q ss_pred EEeEeCCCCCCCc-CCCCCCCCCcceEE
Q 046682 178 KIQVRGCPQLKKL-PVNSSSVKERRVVI 204 (236)
Q Consensus 178 ~L~i~~C~~L~~l-p~~~~~~~~~l~~~ 204 (236)
.|.+.++. +..+ |..... .++|+.+
T Consensus 181 ~L~l~~n~-l~~~~~~~~~~-l~~L~~L 206 (285)
T 1ozn_A 181 RLLLHQNR-VAHVHPHAFRD-LGRLMTL 206 (285)
T ss_dssp EEECCSSC-CCEECTTTTTT-CTTCCEE
T ss_pred EEECCCCc-ccccCHhHccC-cccccEe
Confidence 88888874 5544 333222 2455544
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.84 E-value=9.8e-09 Score=86.83 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=33.0
Q ss_pred cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
.+..+++|++|+++++ .+..++.....+++|+.|++.++ +++.+|..
T Consensus 235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChh
Confidence 3456778888888776 45666665666788888888887 56666654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.84 E-value=7.7e-09 Score=94.70 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=48.5
Q ss_pred CCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc-ccc---c--------ccccccccccccCcccEEec
Q 046682 90 RSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD-KLR---D--------ISEIIGSEHNFFAQLESLTI 157 (236)
Q Consensus 90 ~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~-~~~---~--------~~~~~~~~~~~~p~L~~L~l 157 (236)
++|+.|+++++ .+....++..+++|++|+++++. +..++... ... . ..... .....+|+|+.|++
T Consensus 232 ~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L 308 (597)
T 3oja_B 232 VELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDL 308 (597)
T ss_dssp SCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEEC
T ss_pred CCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEEC
Confidence 34555555555 45555556667777777777653 33332110 000 0 00000 12234566666666
Q ss_pred cccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 158 KWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 158 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
+++ .+..++.....+++|+.|++++| ++..+|..
T Consensus 309 s~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~ 342 (597)
T 3oja_B 309 SHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKLS 342 (597)
T ss_dssp CSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCCC
T ss_pred CCC-CCCccCcccccCCCCCEEECCCC-CCCCcChh
Confidence 654 23344433344667777777776 35555543
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.83 E-value=5.5e-09 Score=95.31 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=112.0
Q ss_pred cccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccc-cchhhcccCCceeecCCccceeeeccccccc
Q 046682 4 LLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNL-LHLAYMENLQELDLEDINLEEMKIDSTEEVK 82 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~-~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~ 82 (236)
+..+.+|+.|+++......+. ....-.++|+.|++.++.-..... ..+..+++|+.|++++|.+..+.
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------- 440 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF-------- 440 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC--------
T ss_pred hccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc--------
Confidence 456788888887654322221 222223689999999885432211 35678899999999998544331
Q ss_pred ccCccCCCCccEEEEecCCCCCc--ch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccc
Q 046682 83 KLFQSGFRSLDRVVISSCKKMKD--LT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKW 159 (236)
Q Consensus 83 ~~~~~~l~~L~~L~i~~c~~l~~--l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 159 (236)
+.....+++|+.|+++++ .+.. ++ .+..+++|++|++++| .+..+.. ..+..+++|++|++++
T Consensus 441 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~------------~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW------------GVFDTLHRLQLLNMSH 506 (606)
T ss_dssp TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECCS
T ss_pred hhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccCh------------hhhcccccCCEEECCC
Confidence 123456788999999887 3443 22 3567889999999887 4444432 2455788899999887
Q ss_pred ccccccc-CCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 160 GRNLKSV-YPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 160 ~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
+. +..+ +.....+++|+.|++++| +++.+|......+.+|+.+
T Consensus 507 N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 507 NN-LLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFF 550 (606)
T ss_dssp SC-CSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEE
T ss_pred Cc-CCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEE
Confidence 73 4444 334456788999999888 4778887643332345544
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.81 E-value=4.6e-08 Score=77.21 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=91.8
Q ss_pred cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682 33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV 110 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~ 110 (236)
++.++.|++.++.-..+....+..+++|++|+++++.++.+... ....+++|+.|+++++ ++..++. +.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 97 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG--------VFNKLTSLTYLNLSTN-QLQSLPNGVFD 97 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh--------hcCCCCCcCEEECCCC-cCCccCHhHhc
Confidence 46899999998854444223367889999999998866554221 1246789999999887 5776653 46
Q ss_pred cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP 185 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 185 (236)
.+++|++|+++++ .++.+.. ..+..+++|++|++++. .++.+... ...+++|+.|++.+++
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPD------------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCCCEEEcCCC-cCcccCH------------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 7899999999876 3444331 23457889999999875 46666554 3458899999998864
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.81 E-value=1.2e-08 Score=85.23 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=52.2
Q ss_pred cCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682 87 SGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK 164 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 164 (236)
..+++|+.|+++++ .+.... .+..+++|++|+++++.--..... ..+..+++|++|+++++ .++
T Consensus 123 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~n-~l~ 188 (306)
T 2z66_A 123 LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQC-QLE 188 (306)
T ss_dssp TTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTS-CCC
T ss_pred hhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccccch------------hHHhhCcCCCEEECCCC-CcC
Confidence 34556666666655 233321 234556666666665532111110 34567899999999876 455
Q ss_pred ccCC-CCCCCCCccEEeEeCCCCCCCc
Q 046682 165 SVYP-NPLPLPKLKKIQVRGCPQLKKL 190 (236)
Q Consensus 165 ~i~~-~~~~~p~L~~L~i~~C~~L~~l 190 (236)
.+.. ....+++|+.|+++++. +..+
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~-l~~~ 214 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNN-FFSL 214 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSC-CSBC
T ss_pred CcCHHHhcCCCCCCEEECCCCc-cCcc
Confidence 5533 34568999999999873 4443
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.81 E-value=1.6e-08 Score=83.36 Aligned_cols=155 Identities=13% Similarity=0.190 Sum_probs=74.4
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccc--------------cc--ccCccCCCCccEEEE
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEE--------------VK--KLFQSGFRSLDRVVI 97 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~--------------~~--~~~~~~l~~L~~L~i 97 (236)
++|+.|+++++.-..+....+..+++|+.|+++++.+..+..+.... .. ......+++|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 56777777766433332223566677777777766444332111100 00 012334555666666
Q ss_pred ecCCCCCc--c-hhhhcccCccEEeEecccccceeccccccccccccccccccccCccc----EEeccccccccccCCCC
Q 046682 98 SSCKKMKD--L-TWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLE----SLTIKWGRNLKSVYPNP 170 (236)
Q Consensus 98 ~~c~~l~~--l-~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~----~L~l~~~~~L~~i~~~~ 170 (236)
+++ .+.. + ..+..+++|++|+++++. ++.+.. ..+..+++|+ +|++++. .++.+....
T Consensus 132 ~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~ 196 (276)
T 2z62_A 132 AHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC------------TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA 196 (276)
T ss_dssp CSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECG------------GGGHHHHTCTTCCEEEECCSS-CCCEECTTS
T ss_pred cCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCH------------HHhhhhhhccccceeeecCCC-cccccCccc
Confidence 554 3333 1 134455666666665542 222221 1122233333 4555442 344454444
Q ss_pred CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 171 LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 171 ~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
...++|+.|+++++. ++.+|.......++|+.+
T Consensus 197 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 197 FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred cCCCcccEEECCCCc-eeecCHhHhcccccccEE
Confidence 555578888888773 777776432222444443
No 45
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.80 E-value=1.9e-09 Score=91.12 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=105.5
Q ss_pred cccCcCCcceeEEeeeh--HHHHHHhcCCcccccceEEEEeccCCCCc-ccc-chhhcccCCceeecCC-ccceeeeccc
Q 046682 4 LLGLKHLNVLSWSFGSS--LAVQKFLKYPKLVSITQFVLVYHCKSAPF-NLL-HLAYMENLQELDLEDI-NLEEMKIDST 78 (236)
Q Consensus 4 L~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~l~~c~~~~~-~~~-~l~~l~~L~~L~i~~c-~le~l~~~~~ 78 (236)
+..+++|++|+++.+.. .....+.. .++|+.|++.+|....- .+. .+..+++|++|++++| .+....+.
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-- 187 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-- 187 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--
Confidence 46778899998875432 23344433 26999999999954221 112 2678899999999999 87642110
Q ss_pred ccccccCccCCC-CccEEEEecCC-CCCc--ch-hhhcccCccEEeEecccccceeccccccccccccccccccccCccc
Q 046682 79 EEVKKLFQSGFR-SLDRVVISSCK-KMKD--LT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLE 153 (236)
Q Consensus 79 ~~~~~~~~~~l~-~L~~L~i~~c~-~l~~--l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~ 153 (236)
.....++ +|+.|++++|. .+.+ ++ .+..+++|++|++++|..+..... ..+..+++|+
T Consensus 188 -----~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~------------~~l~~l~~L~ 250 (336)
T 2ast_B 188 -----VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFQLNYLQ 250 (336)
T ss_dssp -----HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------------GGGGGCTTCC
T ss_pred -----HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH------------HHHhCCCCCC
Confidence 1124578 99999999986 4542 22 345789999999999875543211 2445679999
Q ss_pred EEeccccccccccCC-CCCCCCCccEEeEeCC
Q 046682 154 SLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGC 184 (236)
Q Consensus 154 ~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C 184 (236)
+|++++|..+..-.. ....+|+|+.|++.+|
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999998874432211 1235889999999988
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.80 E-value=9.9e-09 Score=91.87 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=19.6
Q ss_pred cccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682 147 NFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 185 (236)
..+++|+.|+++++ .+..++.....+++|+.|++.+++
T Consensus 211 ~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 211 QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 34555566665542 344444444445556666555543
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.80 E-value=1.6e-08 Score=89.91 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=52.1
Q ss_pred ccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccccc
Q 046682 5 LGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKL 84 (236)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~ 84 (236)
..+++|++|+++......++.+ .-.++|+.|+++++.-..+ .+..+++|++|++++|.+..+.
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l----~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~~---------- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGI----EKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNLD---------- 101 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTG----GGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC----------
T ss_pred hHcCCCCEEEccCCCcccChhh----cccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCceee----------
Confidence 3456666666654322222211 1125677777776643222 2556667777777766444331
Q ss_pred CccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecc
Q 046682 85 FQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFC 123 (236)
Q Consensus 85 ~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C 123 (236)
...+++|+.|+++++ +++.++ +..+++|++|+++++
T Consensus 102 -~~~l~~L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN 137 (457)
T ss_dssp -CTTCTTCCEEECCSS-CCSCCC-CTTCTTCCEEECTTS
T ss_pred -cCCCCcCCEEECCCC-cCCeec-CCCCCcCCEEECCCC
Confidence 234566666666655 455543 455666666666554
No 48
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.78 E-value=4.7e-08 Score=78.67 Aligned_cols=129 Identities=17% Similarity=0.165 Sum_probs=82.5
Q ss_pred cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682 33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV 110 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~ 110 (236)
+++|+.|.++++.-..+....+..+++|+.|+++++.+..+... ....+++|+.|+++++ +++.++. +.
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 109 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG--------VFDSLTQLTVLDLGTN-QLTVLPSAVFD 109 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh--------hcccCCCcCEEECCCC-cCCccChhHhC
Confidence 36788888887754333224466778888888887755544211 1245778888888776 5666643 45
Q ss_pred cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP 185 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 185 (236)
.+++|++|+++++ .+..+. ..+..+++|++|++++. +++.+... ...+++|+.|.+.+.|
T Consensus 110 ~l~~L~~L~Ls~N-~l~~lp-------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 RLVHLKELFMCCN-KLTELP-------------RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECCSS-CCCSCC-------------TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cchhhCeEeccCC-cccccC-------------cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 6788888888765 344433 23456778888888764 55665543 3356777777777653
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.78 E-value=1.1e-08 Score=94.31 Aligned_cols=183 Identities=15% Similarity=0.078 Sum_probs=101.0
Q ss_pred ccccCcCCcceeEEeeehHH---------------HHHHhcCCc--ccccceEEEEeccCCCCccccchhhcccCCceee
Q 046682 3 ELLGLKHLNVLSWSFGSSLA---------------VQKFLKYPK--LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDL 65 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~---------------l~~l~~~~~--l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i 65 (236)
++..+++|++|+++.....+ ...+..... -.++|+.|.+++|.-.......+.++++|+.|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 46788899999988544222 001333333 3478999999998643222245788899999999
Q ss_pred cCCc-cce--eeecccccccccCccCCCCccEEEEecCCCCCcchh---hhcccCccEEeEecccccc-eeccccc--cc
Q 046682 66 EDIN-LEE--MKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW---LVFVQILKQLRIVFCTEME-EIISVDK--LR 136 (236)
Q Consensus 66 ~~c~-le~--l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~---l~~lp~L~~L~i~~C~~L~-~i~~~~~--~~ 136 (236)
++|. +.. ++..... ......+++|+.|+++++ ++..++. +..+++|++|+++++. +. .+..... ..
T Consensus 281 s~n~~l~~~~lp~~~~~---L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L 355 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQA---LADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKL 355 (636)
T ss_dssp TTCTTSCHHHHHHHHHH---HHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEE
T ss_pred cCCCCCccccchHHHHh---hhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCC
Confidence 9884 653 3211000 000112367777777776 4556543 5677777777777653 22 2220000 00
Q ss_pred --------cccccccccccccCc-ccEEeccccccccccCCCCC--CCCCccEEeEeCCCCCCCcCC
Q 046682 137 --------DISEIIGSEHNFFAQ-LESLTIKWGRNLKSVYPNPL--PLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 137 --------~~~~~~~~~~~~~p~-L~~L~l~~~~~L~~i~~~~~--~~p~L~~L~i~~C~~L~~lp~ 192 (236)
...... ..+..+++ |++|++++.. ++.++.... .+++|+.|+++++.--...|.
T Consensus 356 ~~L~L~~N~l~~lp-~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 356 ASLNLAYNQITEIP-ANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp SEEECCSSEEEECC-TTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred CEEECCCCcccccc-HhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 000000 23455666 7777777654 445554322 244777888777754444443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.77 E-value=1.1e-08 Score=87.44 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=18.9
Q ss_pred CCCCccEEEEecCCCCCcchh---hhcccCccEEeEecccccce
Q 046682 88 GFRSLDRVVISSCKKMKDLTW---LVFVQILKQLRIVFCTEMEE 128 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~---l~~lp~L~~L~i~~C~~L~~ 128 (236)
.+++|+.|+++++ .++.++. +..+++|++|+++++..+..
T Consensus 122 ~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 122 PLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp TCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc
Confidence 3455555555544 3444332 33455555555555543433
No 51
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.77 E-value=5.9e-08 Score=78.96 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=96.3
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVF 111 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~ 111 (236)
++|+.|+++++.-..+....+..+++|+.|+++++.+..+..+ ....+++|+.|+++++ +++.++. +..
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 129 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG--------VFDHLTQLDKLYLGGN-QLKSLPSGVFDR 129 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh--------HhcccCCCCEEEcCCC-cCCCcChhHhcc
Confidence 7899999999864444334478899999999999966655321 2356899999999987 6777754 467
Q ss_pred ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682 112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP 185 (236)
Q Consensus 112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 185 (236)
+++|++|+++++ .++.+.. ..+..+++|++|++++. .++.++.. ...+++|+.|.+.+++
T Consensus 130 l~~L~~L~Ls~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 130 LTKLKELRLNTN-QLQSIPA------------GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcccEEECcCC-cCCccCH------------HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 999999999887 5554432 24567899999999875 46666553 3468999999999864
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.76 E-value=2.1e-08 Score=91.81 Aligned_cols=37 Identities=16% Similarity=-0.025 Sum_probs=18.3
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCcc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINL 70 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~l 70 (236)
++|+.|+++++.-..+....+..+++|+.|++++|.+
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 4555666655533222212245556666666665533
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.76 E-value=1.9e-08 Score=84.05 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=53.6
Q ss_pred cCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682 87 SGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK 164 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 164 (236)
..+++|+.|+++++ .+..++. +..+++|+.|+++++ +++.+.. ..+..+++|++|++++. .++
T Consensus 121 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~L~~L~L~~N-~l~ 185 (290)
T 1p9a_G 121 RGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA------------GLLNGLENLDTLLLQEN-SLY 185 (290)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT------------TTTTTCTTCCEEECCSS-CCC
T ss_pred cCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH------------HHhcCcCCCCEEECCCC-cCC
Confidence 34556666666655 4554432 235566666666554 2333321 23456899999999874 577
Q ss_pred ccCCCCCCCCCccEEeEeCCC
Q 046682 165 SVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 165 ~i~~~~~~~p~L~~L~i~~C~ 185 (236)
.++.+....++|+.|.+.+.|
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCC
T ss_pred ccChhhcccccCCeEEeCCCC
Confidence 888777778899999988643
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.76 E-value=4.7e-08 Score=87.55 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=87.1
Q ss_pred cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch----hhh
Q 046682 35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT----WLV 110 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~----~l~ 110 (236)
+++.|.+.++.-... .....+++|++|++++|.+.... +.....+++|+.|+++++ ++..++ .+.
T Consensus 303 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~ 371 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHM--LCPSKISPFLHLDFSNNLLTDTV--------FENCGHLTELETLILQMN-QLKELSKIAEMTT 371 (520)
T ss_dssp CCSEEEEESSCCCCC--CCCSSCCCCCEEECCSSCCCTTT--------TTTCCCCSSCCEEECCSS-CCCBHHHHHHHHT
T ss_pred ceeEEEcCCCccccc--cchhhCCcccEEEeECCccChhh--------hhhhccCCCCCEEEccCC-ccCccccchHHHh
Confidence 466666666643222 11246677777777777433211 122345677777777776 455432 245
Q ss_pred cccCccEEeEecccccceecccc-ccc-ccc-------cccccccccc-CcccEEeccccccccccCCCCCCCCCccEEe
Q 046682 111 FVQILKQLRIVFCTEMEEIISVD-KLR-DIS-------EIIGSEHNFF-AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQ 180 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~-~~~-~~~-------~~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~ 180 (236)
.+++|++|+++++.--..+.... ... ... .........+ ++|++|+++++ +++.++.....+++|+.|+
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELN 450 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEE
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEE
Confidence 67777777777654222122110 000 000 0000011122 68999999876 5667776666899999999
Q ss_pred EeCCCCCCCcCCCCCCCCCcceEE
Q 046682 181 VRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 181 i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
+++| +++.+|.......++|+.+
T Consensus 451 L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 451 VASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCC-cCCccCHHHhccCCcccEE
Confidence 9998 7888987622222455544
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.75 E-value=6.7e-08 Score=82.47 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=89.4
Q ss_pred ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--h
Q 046682 32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--L 109 (236)
Q Consensus 32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l 109 (236)
+.++++.|+++++.-..+....+..+++|+.|+++++.+..+.. .....+++|+.|+++++ +++.++. +
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 120 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE--------DSFSSLGSLEHLDLSYN-YLSNLSSSWF 120 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECCSS-CCSSCCHHHH
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH--------hhcCCCCCCCEEECCCC-cCCcCCHhHh
Confidence 34689999999886444432357889999999999986665522 12456889999999987 6777754 5
Q ss_pred hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCC
Q 046682 110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGC 184 (236)
Q Consensus 110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C 184 (236)
..+++|++|+++++ .++.+... ..+..+++|++|+++++..+..+... ...+++|++|++.++
T Consensus 121 ~~l~~L~~L~L~~n-~l~~l~~~-----------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 121 KPLSSLTFLNLLGN-PYKTLGET-----------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp TTCTTCSEEECTTC-CCSSSCSS-----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCCccCCEEECCCC-CCcccCch-----------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 68999999999876 34433310 12345677777777766555555432 334666777777666
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.74 E-value=4.1e-08 Score=87.17 Aligned_cols=166 Identities=11% Similarity=0.073 Sum_probs=100.9
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccc
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVK 82 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~ 82 (236)
++..+.+|++|+++......+ .... .++|+.|+++++.-..+ .+..+++|++|++++|.+..+.
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~----~~~~-l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l~-------- 122 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL----DLSQ-NTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD-------- 122 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC----CCTT-CTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCCC--------
T ss_pred hhcccCCCCEEEccCCcCCeE----cccc-CCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCeec--------
Confidence 456778888888875443322 1222 37899999998854333 3678889999999988555442
Q ss_pred ccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc-ccccc-----cccccccccccCcccEEe
Q 046682 83 KLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD-KLRDI-----SEIIGSEHNFFAQLESLT 156 (236)
Q Consensus 83 ~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~-~~~~~-----~~~~~~~~~~~p~L~~L~ 156 (236)
...+++|+.|+++++ .++.+ .+..+++|++|++++|..+..+.... ..... .......+..+++|+.|.
T Consensus 123 ---~~~l~~L~~L~l~~N-~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~ 197 (457)
T 3bz5_A 123 ---VSQNPLLTYLNCARN-TLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197 (457)
T ss_dssp ---CTTCTTCCEEECTTS-CCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEE
T ss_pred ---CCCCCcCCEEECCCC-cccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEE
Confidence 234677777777766 45555 35566777777777665444331000 00000 000001245677888888
Q ss_pred ccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 157 IKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 157 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
++++ +++.+. ...+++|+.|+++++ ++..+|.+
T Consensus 198 l~~N-~l~~~~--l~~l~~L~~L~Ls~N-~l~~ip~~ 230 (457)
T 3bz5_A 198 CDTN-NITKLD--LNQNIQLTFLDCSSN-KLTEIDVT 230 (457)
T ss_dssp CCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCCCT
T ss_pred CcCC-cCCeec--cccCCCCCEEECcCC-cccccCcc
Confidence 8764 344442 446789999999987 67777743
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.74 E-value=4.2e-08 Score=89.47 Aligned_cols=154 Identities=14% Similarity=0.049 Sum_probs=74.8
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcc----hh
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL----TW 108 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l----~~ 108 (236)
++|+.|++.+|.-..+ +.+ .+++|+.|.+++| .+..+ ....+++|+.|+++++ .+..+ ..
T Consensus 307 ~~L~~L~l~~n~l~~l--p~~-~l~~L~~L~l~~n~~~~~~-----------~~~~l~~L~~L~ls~n-~l~~~~~~~~~ 371 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQF--PTL-DLPFLKSLTLTMNKGSISF-----------KKVALPSLSYLDLSRN-ALSFSGCCSYS 371 (606)
T ss_dssp CCCSEEEEESCCCSSC--CCC-CCSSCCEEEEESCSSCEEC-----------CCCCCTTCCEEECCSS-CEEEEEECCHH
T ss_pred ccCCEEEcccccCccc--ccC-CCCccceeeccCCcCccch-----------hhccCCCCCEEECcCC-ccCCCcchhhh
Confidence 4555555555543222 233 5555555555555 33322 1234566666666665 34332 12
Q ss_pred hhcccCccEEeEecccccceeccccccc---c--------cccccc-ccccccCcccEEeccccccccccCCCCCCCCCc
Q 046682 109 LVFVQILKQLRIVFCTEMEEIISVDKLR---D--------ISEIIG-SEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKL 176 (236)
Q Consensus 109 l~~lp~L~~L~i~~C~~L~~i~~~~~~~---~--------~~~~~~-~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L 176 (236)
+..+++|++|++++|. +..+...-... . ...... ..+..+++|++|+++++.-....+.....+++|
T Consensus 372 ~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 3456667777766654 33222100000 0 000000 234566777777777765333333344567788
Q ss_pred cEEeEeCCCCCCC-cCCCCCCCCCcceEE
Q 046682 177 KKIQVRGCPQLKK-LPVNSSSVKERRVVI 204 (236)
Q Consensus 177 ~~L~i~~C~~L~~-lp~~~~~~~~~l~~~ 204 (236)
+.|.+.+|.--.. +|...... .+|+.+
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l-~~L~~L 478 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANT-TNLTFL 478 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTC-TTCCEE
T ss_pred CEEECCCCcCCCcchHHhhccC-CCCCEE
Confidence 8888887743322 44433222 445444
No 58
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.73 E-value=1.5e-08 Score=75.79 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=86.6
Q ss_pred cccceEEEEeccCCC--CccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCc-chhh
Q 046682 33 VSITQFVLVYHCKSA--PFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKD-LTWL 109 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-l~~l 109 (236)
+++++.|++.+|.-. .++ ..+..+++|+.|.+++|.+..+ . ....+++|+.|+++++ .+.. ++..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~n-~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--A--------NLPKLNKLKKLELSDN-RVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--T--------TCCCCTTCCEEECCSS-CCCSCTHHH
T ss_pred CccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--h--------hhhcCCCCCEEECCCC-cccchHHHH
Confidence 378999999998543 231 3457889999999999865544 1 2356889999999988 5666 5443
Q ss_pred -hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC----CCCCCCCccEEeEe
Q 046682 110 -VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP----NPLPLPKLKKIQVR 182 (236)
Q Consensus 110 -~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~----~~~~~p~L~~L~i~ 182 (236)
..+++|++|+++++. ++.+... ..+..+++|++|+++++ .+..++. ....+|+|+.|+++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTI-----------EPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHH-----------GGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCc-CCChHHH-----------HHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 458999999998874 4432100 24567889999999886 4555543 23357888888665
No 59
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.72 E-value=2.9e-08 Score=93.51 Aligned_cols=121 Identities=18% Similarity=0.078 Sum_probs=53.8
Q ss_pred ccccCcCCcceeEEeeehH-HHHHHhcCCcccccceEEEEeccCCC-CccccchhhcccCCceeecCCcccee-------
Q 046682 3 ELLGLKHLNVLSWSFGSSL-AVQKFLKYPKLVSITQFVLVYHCKSA-PFNLLHLAYMENLQELDLEDINLEEM------- 73 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~l~~c~~~-~~~~~~l~~l~~L~~L~i~~c~le~l------- 73 (236)
.+..+.+|++|+++..... .+........ .++|+.|+++++.-. ......+.++++|++|++++|.+...
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 4556677777776532211 0111001111 256777777766321 11111124556666666655522211
Q ss_pred ----------eecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEeccc
Q 046682 74 ----------KIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCT 124 (236)
Q Consensus 74 ----------~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~ 124 (236)
.+....-.+..+...+++|+.|+++++.--..++.+..+++|++|++++|.
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence 111100001112245566666666666322223335566666666666653
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=92.38 Aligned_cols=179 Identities=15% Similarity=0.029 Sum_probs=97.2
Q ss_pred cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCcc--ccchhhcccCCceeecCCccceeeec-------
Q 046682 6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFN--LLHLAYMENLQELDLEDINLEEMKID------- 76 (236)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~--~~~l~~l~~L~~L~i~~c~le~l~~~------- 76 (236)
.+.+|+.|++...... ..... .-.++|+.|+++++.-.... ...+..+++|+.|++++|.+..+...
T Consensus 323 ~l~~L~~L~l~~n~~~---~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L 398 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGG---NAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398 (570)
T ss_dssp BCSSCCEEEEESCBSC---CBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred cccccCEEeCcCCccc---ccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCC
Confidence 4566777776643211 11111 22367777777776432111 12345667777777776633333211
Q ss_pred ------cccccc-c--cCccCCCCccEEEEecCCCCCcc-h-hhhcccCccEEeEecccccc-eeccccccccccccccc
Q 046682 77 ------STEEVK-K--LFQSGFRSLDRVVISSCKKMKDL-T-WLVFVQILKQLRIVFCTEME-EIISVDKLRDISEIIGS 144 (236)
Q Consensus 77 ------~~~~~~-~--~~~~~l~~L~~L~i~~c~~l~~l-~-~l~~lp~L~~L~i~~C~~L~-~i~~~~~~~~~~~~~~~ 144 (236)
...-.+ . .....+++|+.|++++| .+... + .+..+++|++|++++|.-.. .++ .
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-------------~ 464 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-------------D 464 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-------------S
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccch-------------h
Confidence 000000 0 12344566777777666 33332 1 24456777777777664221 111 2
Q ss_pred cccccCcccEEecccccccccc-CCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 145 EHNFFAQLESLTIKWGRNLKSV-YPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.+..+++|++|+++++. ++.+ +.....+++|+.|++++| +++.+|.......++|+.+
T Consensus 465 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred hhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEE
Confidence 45678899999998874 4555 334556889999999998 6777775433223555554
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.71 E-value=3.1e-08 Score=89.21 Aligned_cols=158 Identities=19% Similarity=0.155 Sum_probs=102.7
Q ss_pred ccCcCCcceeEEeeehHH-HHHHhcCCcccccceEEEEeccCCCCccc--cchhhcccCCceeecCCccceeeecccccc
Q 046682 5 LGLKHLNVLSWSFGSSLA-VQKFLKYPKLVSITQFVLVYHCKSAPFNL--LHLAYMENLQELDLEDINLEEMKIDSTEEV 81 (236)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~L~~L~l~~c~~~~~~~--~~l~~l~~L~~L~i~~c~le~l~~~~~~~~ 81 (236)
+.+++|+.|+++...... +..-.....-.++|+.|+++++.-..+.. ..+..+++|+.|++++|.+..++
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp------- 403 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP------- 403 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC-------
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC-------
Confidence 468889999987543222 11111112223789999999985433321 22678899999999999665552
Q ss_pred cccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 82 KKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
.....+++|+.|+++++ +++.++. ...++|++|++++| +++.++ ..+++|++|+++++
T Consensus 404 --~~~~~~~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~Ls~N-~l~~~~----------------~~l~~L~~L~Ls~N- 461 (549)
T 2z81_A 404 --DSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNN-NLDSFS----------------LFLPRLQELYISRN- 461 (549)
T ss_dssp --SCCCCCTTCCEEECTTS-CCSCCCT-TSCTTCSEEECCSS-CCSCCC----------------CCCTTCCEEECCSS-
T ss_pred --hhhcccccccEEECCCC-Ccccccc-hhcCCceEEECCCC-Chhhhc----------------ccCChhcEEECCCC-
Confidence 23345788999999888 4666542 22468889988877 333321 25678888888776
Q ss_pred cccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 162 NLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 162 ~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
+++.++. ...+++|+.|+++++ +++.+|..
T Consensus 462 ~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~ 491 (549)
T 2z81_A 462 KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDG 491 (549)
T ss_dssp CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred ccCcCCC-cccCccCCEEecCCC-ccCCcCHH
Confidence 5666654 235778888888887 66666654
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.70 E-value=8.5e-08 Score=80.46 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=67.4
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccce---eeecccccccccCccCCCCccEEEEecCCCCCcchh--
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEE---MKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW-- 108 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~---l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-- 108 (236)
++|+.|+++++.-.......+..+++|++|++++|.+.. +.. ......+++|+.|++++| +++.++.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~ 216 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA-------ALCPHKFPAIQNLALRNT-GMETPTGVC 216 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT-------TSCTTSSCCCCSCBCCSS-CCCCHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH-------HHhhhcCCCCCEEECCCC-CCCchHHHH
Confidence 455555555553322221234455555555555552211 100 001134556666666665 4544432
Q ss_pred ---hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682 109 ---LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 109 ---l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 185 (236)
...+++|++|+++++. +..+.+.. . .....+++|++|+++++ .++.++... +++|+.|+++++
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-------~--~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N- 282 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNS-LRATVNPS-------A--PRCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN- 282 (310)
T ss_dssp HHHHHHTCCCSSEECTTSC-CCCCCCSC-------C--SSCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-
T ss_pred HHHHhcCCCCCEEECCCCC-CCccchhh-------H--HhccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-
Confidence 2345666666666543 22221100 0 11222368888888764 355555433 378888888877
Q ss_pred CCCCcCC
Q 046682 186 QLKKLPV 192 (236)
Q Consensus 186 ~L~~lp~ 192 (236)
+++.+|.
T Consensus 283 ~l~~~~~ 289 (310)
T 4glp_A 283 RLNRAPQ 289 (310)
T ss_dssp CCCSCCC
T ss_pred cCCCCch
Confidence 5666655
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=1.3e-07 Score=90.26 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=67.7
Q ss_pred ccccCcCCcceeEEeeehHH--------------H-HHHhcCCc--ccccceEEEEeccCCCCccccchhhcccCCceee
Q 046682 3 ELLGLKHLNVLSWSFGSSLA--------------V-QKFLKYPK--LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDL 65 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~--------------l-~~l~~~~~--l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i 65 (236)
++.+|++|+.|+++...... + ..+..... -.++|+.|.+++|.-.......+.++++|+.|.+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46788999999988544222 0 01333322 3478999999998642221245788899999999
Q ss_pred cCCc-cce--eeecccccccccCccCCCCccEEEEecCCCCCcchh---hhcccCccEEeEecc
Q 046682 66 EDIN-LEE--MKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW---LVFVQILKQLRIVFC 123 (236)
Q Consensus 66 ~~c~-le~--l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~---l~~lp~L~~L~i~~C 123 (236)
++|. +.. ++.....- ......+++|+.|+++++ .+..++. +..+++|+.|+++++
T Consensus 523 s~N~~lsg~~iP~~i~~L--~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRL--ADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp TTCTTSCHHHHHHHHHHH--HHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS
T ss_pred cCCCCcccccchHHHHhh--hhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC
Confidence 9883 653 22110000 001223456666666665 3445543 456666666666654
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.67 E-value=1.4e-07 Score=86.01 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=65.4
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccc-eeeecccccccccCccCCCCccEEEEecCCCCCcch----h
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLE-EMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT----W 108 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le-~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~----~ 108 (236)
++|+.|++.++.-.......+..+++|+.|.+++|.+. .+.. .....+++|+.|+++++ .+..+. .
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 371 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT--------GCLENLENLRELDLSHD-DIETSDCCNLQ 371 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS--------STTTTCTTCCEEECCSS-CCCEEEESTTT
T ss_pred ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch--------hhhhccCcCCEEECCCC-ccccccCcchh
Confidence 45555555555332221123455555666655555211 1211 11334566666666665 344332 2
Q ss_pred hhcccCccEEeEecccccceecccc----cccc--------cccc-ccccccccCcccEEeccccccccccCCCCCCCCC
Q 046682 109 LVFVQILKQLRIVFCTEMEEIISVD----KLRD--------ISEI-IGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPK 175 (236)
Q Consensus 109 l~~lp~L~~L~i~~C~~L~~i~~~~----~~~~--------~~~~-~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~ 175 (236)
+..+++|++|+++++. +..+.... .... .... ....+..+++|++|+++++.--...+.....+++
T Consensus 372 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp TTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred cccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence 4456666666666653 22221100 0000 0000 0012445677777777665422222222345677
Q ss_pred ccEEeEeCCC
Q 046682 176 LKKIQVRGCP 185 (236)
Q Consensus 176 L~~L~i~~C~ 185 (236)
|++|++++|+
T Consensus 451 L~~L~L~~n~ 460 (606)
T 3t6q_A 451 LQHLNLQGNH 460 (606)
T ss_dssp CCEEECTTCB
T ss_pred CCEEECCCCC
Confidence 7777777774
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.67 E-value=4.5e-08 Score=82.83 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=36.0
Q ss_pred cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
.+..+++|++|+++++ .++.++.....+++|+.|+++++ +++.+|..
T Consensus 236 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp GGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred HhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChh
Confidence 4567889999999876 56677766667889999999987 57777654
No 66
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=9.7e-08 Score=78.53 Aligned_cols=125 Identities=19% Similarity=0.246 Sum_probs=90.1
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ 113 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp 113 (236)
++|+.|++.++.-..+ +.+..+++|+.|++++|.+..+. ....+++|+.|+++++ +++.++.+.. +
T Consensus 41 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~~----------~l~~l~~L~~L~L~~N-~l~~l~~~~~-~ 106 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLS----------PLKDLTKLEELSVNRN-RLKNLNGIPS-A 106 (263)
T ss_dssp TTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG----------GGTTCSSCCEEECCSS-CCSCCTTCCC-S
T ss_pred CcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCCh----------hhccCCCCCEEECCCC-ccCCcCcccc-C
Confidence 6788888888854444 46778889999999888655442 1456888999999887 6777765555 8
Q ss_pred CccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCc
Q 046682 114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKL 190 (236)
Q Consensus 114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~l 190 (236)
+|++|+++++ .++.+ ..+..+++|+.|++++.. ++.+. ....+++|+.|+++++ ++..+
T Consensus 107 ~L~~L~L~~N-~l~~~--------------~~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~ 165 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--------------DSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT 165 (263)
T ss_dssp SCCEEECCSS-CCSBS--------------GGGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC
T ss_pred cccEEEccCC-ccCCC--------------hhhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch
Confidence 8999999887 34433 245578999999998753 55553 3446899999999987 44444
No 67
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.65 E-value=6.9e-08 Score=74.33 Aligned_cols=125 Identities=11% Similarity=0.100 Sum_probs=82.9
Q ss_pred ccceEEEEeccCCCCccccchhhcc-cCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYME-NLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV 110 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~-~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~ 110 (236)
..++.|.+.++.-..+ +.+..+. +|+.|++++|.+..+ . ....+++|+.|+++++ .+..++. ..
T Consensus 19 ~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~--------~l~~l~~L~~L~Ls~N-~l~~~~~~~~~ 85 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--D--------GFPLLRRLKTLLVNNN-RICRIGEGLDQ 85 (176)
T ss_dssp TSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--C--------CCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred CCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--c--------ccccCCCCCEEECCCC-cccccCcchhh
Confidence 6788999988854433 4455555 899999998866654 1 2346788999999887 5777653 36
Q ss_pred cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC----CCCCCCccEEeEeCC
Q 046682 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN----PLPLPKLKKIQVRGC 184 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~----~~~~p~L~~L~i~~C 184 (236)
.+++|++|+++++. +..+... ..+..+++|+.|++.+.+ +..++.. ...+|+|+.|++.++
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~-----------~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDL-----------DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGG-----------GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCCc-CCcchhh-----------HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 78999999998763 4433210 145578889999998764 3333332 234666666666554
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.65 E-value=6.1e-08 Score=88.36 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=21.7
Q ss_pred cCCCCccEEEEecCCCCCcch--hhhcccCccEEeEeccc
Q 046682 87 SGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCT 124 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~ 124 (236)
..+++|+.|++++| .+.... .+..+++|++|++++|.
T Consensus 422 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 422 QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred hCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEEECCCCC
Confidence 45566777777666 343321 24456777777776663
No 69
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.64 E-value=2.8e-07 Score=73.66 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=78.8
Q ss_pred cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682 33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV 110 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~ 110 (236)
++.++.|++.+..-..+....+..+++|+.|+++++.+..+.. .....+++|+.|+++++ +++.++. +.
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~ 101 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP--------DAFQGLRSLNSLVLYGN-KITELPKSLFE 101 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT--------TTTTTCSSCCEEECCSS-CCCCCCTTTTT
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH--------HHhhCCcCCCEEECCCC-cCCccCHhHcc
Confidence 3577778877774333322346677788888887775554421 12345677888888776 5666643 35
Q ss_pred cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCC
Q 046682 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGC 184 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C 184 (236)
.+++|++|+++++ .+..+.. ..+..+++|++|++++. .++.+... ...+++|+.|.+.+.
T Consensus 102 ~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-KINCLRV------------DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-CCCEeCH------------HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 6778888888765 3333321 24456777888888764 35555443 334677777777654
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.63 E-value=3.4e-07 Score=77.26 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=94.9
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ 113 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp 113 (236)
++|+.|+++++.-..+....+..+++|+.|+++++.+....+. ......+++|+.|++.++ .+..++. ...+
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~~~l~~L~~L~l~~n-~l~~l~~-~~~~ 192 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE------NGAFQGMKKLSYIRIADT-NITTIPQ-GLPP 192 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC------TTGGGGCTTCCEEECCSS-CCCSCCS-SCCT
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC------hhhccCCCCcCEEECCCC-ccccCCc-cccc
Confidence 6899999998854444323467889999999998844321111 112345788888888877 5666543 2237
Q ss_pred CccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCC
Q 046682 114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
+|++|+++++. ++.+.. ..+..+++|++|+++++. ++.+.. ....+++|++|++++| ++..+|.
T Consensus 193 ~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 193 SLTELHLDGNK-ITKVDA------------ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp TCSEEECTTSC-CCEECT------------GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred cCCEEECCCCc-CCccCH------------HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCCh
Confidence 88888888763 444321 245567888888887653 444443 2345788888888888 6777776
Q ss_pred CCCCCCCcceEE
Q 046682 193 NSSSVKERRVVI 204 (236)
Q Consensus 193 ~~~~~~~~l~~~ 204 (236)
..... ++|+.+
T Consensus 258 ~l~~l-~~L~~L 268 (330)
T 1xku_A 258 GLADH-KYIQVV 268 (330)
T ss_dssp TTTTC-SSCCEE
T ss_pred hhccC-CCcCEE
Confidence 54332 455544
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.63 E-value=3.7e-07 Score=82.68 Aligned_cols=157 Identities=12% Similarity=0.090 Sum_probs=84.9
Q ss_pred cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh----hh
Q 046682 35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW----LV 110 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~----l~ 110 (236)
+++.|++.++.-... .....+++|++|+++++.+.... +.....+++|+.|+++++ +++.++. +.
T Consensus 332 ~L~~L~l~~n~~~~~--~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~ 400 (562)
T 3a79_B 332 NIKMLSISDTPFIHM--VCPPSPSSFTFLNFTQNVFTDSV--------FQGCSTLKRLQTLILQRN-GLKNFFKVALMTK 400 (562)
T ss_dssp CCSEEEEESSCCCCC--CCCSSCCCCCEEECCSSCCCTTT--------TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTT
T ss_pred cceEEEccCCCcccc--cCccCCCCceEEECCCCccccch--------hhhhcccCCCCEEECCCC-CcCCcccchhhhc
Confidence 466677766643222 11245667777777766333211 112244566666666665 4554321 34
Q ss_pred cccCccEEeEecccccceecccc----ccccc---c--cccccccccc-CcccEEeccccccccccCCCCCCCCCccEEe
Q 046682 111 FVQILKQLRIVFCTEMEEIISVD----KLRDI---S--EIIGSEHNFF-AQLESLTIKWGRNLKSVYPNPLPLPKLKKIQ 180 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~----~~~~~---~--~~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~ 180 (236)
.+++|++|+++++.--..+.... ..... . .........+ ++|++|+++++ +++.++.....+++|+.|+
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELN 479 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEE
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEE
Confidence 56666666666553211121100 00000 0 0000111233 69999999887 7888887777899999999
Q ss_pred EeCCCCCCCcCCCCCCCCCcceEE
Q 046682 181 VRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 181 i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
++++ +++.+|.......++|+.+
T Consensus 480 L~~N-~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 480 VASN-QLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred CCCC-CCCCCCHHHHhcCCCCCEE
Confidence 9997 7888987622222455544
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.62 E-value=6.8e-08 Score=81.21 Aligned_cols=181 Identities=15% Similarity=0.085 Sum_probs=86.5
Q ss_pred cCcCCcceeEEeeehHHHHHHhcCC--cccccceEEEEeccCCCCccccchhhc-----ccCCceeecCCccceeeeccc
Q 046682 6 GLKHLNVLSWSFGSSLAVQKFLKYP--KLVSITQFVLVYHCKSAPFNLLHLAYM-----ENLQELDLEDINLEEMKIDST 78 (236)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~--~l~~~L~~L~l~~c~~~~~~~~~l~~l-----~~L~~L~i~~c~le~l~~~~~ 78 (236)
.+.+|++|+++...... .+.... .-.++|+.|+++++.-... ...+..+ ++|++|+++++.+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~--- 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG--TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC--- 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBS--CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT---
T ss_pred CcCCccEEEccCCcccc--hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH---
Confidence 57788888877543221 111110 2236788888887754333 1334555 788888888775444321
Q ss_pred ccccccCccCCCCccEEEEecCCCCCcc---hhh--hcccCccEEeEecccccceecccc-------cccc--------c
Q 046682 79 EEVKKLFQSGFRSLDRVVISSCKKMKDL---TWL--VFVQILKQLRIVFCTEMEEIISVD-------KLRD--------I 138 (236)
Q Consensus 79 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l---~~l--~~lp~L~~L~i~~C~~L~~i~~~~-------~~~~--------~ 138 (236)
.....+++|+.|+++++.-...+ ..+ ..+++|++|+++++. +..+.... .... .
T Consensus 167 -----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 167 -----EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp -----TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred -----HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 12234566666666655321111 111 455666666665542 22110000 0000 0
Q ss_pred cccc-cccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 139 SEII-GSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 139 ~~~~-~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.... ......+++|++|+++++. ++.++.... ++|+.|+++++ +++.+|. ... .++|+.+
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~-l~~L~~L 301 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDE-LPQVGNL 301 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTT-SCEEEEE
T ss_pred CcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCChh-Hhh-CCCCCEE
Confidence 0000 0122335667777776542 444443322 66777777766 5666655 222 2455554
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.62 E-value=7.9e-08 Score=86.08 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=31.8
Q ss_pred cccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCC
Q 046682 145 EHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCP 185 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~ 185 (236)
.+..+++|++|+++++ +++.++.. ...+++|+.|++.++|
T Consensus 439 ~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 439 QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 3458899999999986 67777765 4568889999988875
No 74
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.62 E-value=1.1e-07 Score=79.99 Aligned_cols=176 Identities=11% Similarity=0.037 Sum_probs=93.1
Q ss_pred ccccCcCCcceeEEe-eehH-HHH-HHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccc
Q 046682 3 ELLGLKHLNVLSWSF-GSSL-AVQ-KFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTE 79 (236)
Q Consensus 3 eL~~L~~L~~L~i~~-~~~~-~l~-~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~ 79 (236)
.+..+++|++|+++. .... .+. .+. -.++|+.|+++++.-.......+..+++|++|+++++.+....
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----- 141 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIA----KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL----- 141 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGG----GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-----
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHh----cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-----
Confidence 467788999999873 2111 111 121 1268999999988543222245788899999999988443211
Q ss_pred cccccCccCCCCccEEEEecCCCCC-cch-hhhccc-CccEEeEecccccceeccccccccc----------cccccccc
Q 046682 80 EVKKLFQSGFRSLDRVVISSCKKMK-DLT-WLVFVQ-ILKQLRIVFCTEMEEIISVDKLRDI----------SEIIGSEH 146 (236)
Q Consensus 80 ~~~~~~~~~l~~L~~L~i~~c~~l~-~l~-~l~~lp-~L~~L~i~~C~~L~~i~~~~~~~~~----------~~~~~~~~ 146 (236)
+.....+++|+.|+++++ .+. .++ .+..++ +|++|+++++.--..++..-..... .......+
T Consensus 142 ---p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 142 ---PPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp ---CGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGC
T ss_pred ---ChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHH
Confidence 122345778888888776 444 232 345555 7777777765322121110000000 00001234
Q ss_pred cccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 147 NFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
..+++|++|++++.. +.........+++|++|+++++.--..+|.
T Consensus 218 ~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp CTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred hcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCCh
Confidence 456677777776543 221111233456666666666633224443
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.62 E-value=2.3e-07 Score=83.52 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=68.9
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVF 111 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~ 111 (236)
+.++.|+++++.-..+....+..+++|++|++++|.+..+.. .....+++|+.|+++++ .+..++. +..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG--------DAFYSLGSLEHLDLSDN-HLSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECTTS-CCCSCCHHHHTT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh--------hhccccccCCEEECCCC-ccCccCHHHhcc
Confidence 567777777774332322345667777777777775544421 12344666777777666 4555432 456
Q ss_pred ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCC
Q 046682 112 VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGC 184 (236)
Q Consensus 112 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C 184 (236)
+++|++|+++++. ++.+... ..+..+++|++|+++++..+..++. ....+++|++|++.++
T Consensus 97 l~~L~~L~Ls~n~-l~~~~~~-----------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 97 LSSLKYLNLMGNP-YQTLGVT-----------SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp CTTCCEEECTTCC-CSSSCSS-----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCCCcEEECCCCc-ccccchh-----------hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 6667777666652 2211000 1233455566666655544444432 2334555555555555
No 76
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.62 E-value=4.9e-07 Score=72.64 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=91.5
Q ss_pred ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682 58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL 135 (236)
Q Consensus 58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~ 135 (236)
++|+.|+++++.+..+.. .....+++|+.|+++++ ++..++. +..+++|++|+++++ .++.+..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~--------~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~---- 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP--------GVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS---- 105 (229)
T ss_dssp TTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred CCCCEEEcCCCccCccCH--------HHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh----
Confidence 789999999996665422 22356899999999987 5777753 568999999999987 5555432
Q ss_pred ccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
..+..+++|++|.+++. +++.++.....+++|+.|+++++ +++.+|........+|+.+
T Consensus 106 --------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 106 --------AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred --------hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 23467899999999875 57777776778999999999997 7888886433323555554
No 77
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.61 E-value=2.7e-08 Score=83.78 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=98.6
Q ss_pred ccccCcCCcceeEEeeehH-HHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccc-eeeeccccc
Q 046682 3 ELLGLKHLNVLSWSFGSSL-AVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLE-EMKIDSTEE 80 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le-~l~~~~~~~ 80 (236)
.+..+++|++|+++..... .+...+ .-.++|+.|+++++.-.......+..+++|++|++++|.+. .++......
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGAIPDFL---SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEECCGGG---GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred hHhcCCCCCEEECcCCeeCCcCCHHH---hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 4678889999998754322 111111 11268888888887533222244677888888888877433 221100000
Q ss_pred --------------c--cccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccccccccccc
Q 046682 81 --------------V--KKLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEII 142 (236)
Q Consensus 81 --------------~--~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~ 142 (236)
. .+.....++ |+.|+++++ .+.... .+..+++|++|+++++.- ...+
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~------------ 237 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSL-AFDL------------ 237 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEE-CCBG------------
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCce-eeec------------
Confidence 0 011223333 777777766 344321 345788999999987742 2221
Q ss_pred cccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 143 GSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 143 ~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
..+..+++|++|+++++.--..++.....+++|+.|++++++--..+|..
T Consensus 238 -~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 238 -GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp -GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred -CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 12446688888888876432244444456788888888887443356654
No 78
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.61 E-value=2.5e-07 Score=81.27 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=81.0
Q ss_pred cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhhcc
Q 046682 35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLVFV 112 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~l 112 (236)
+|+.|++.++.-.......+..+++|+.|++++|.+..+.. .....+++|+.|+++++ .+..+. .+..+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 346 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD--------NAFWGLTHLLKLNLSQN-FLGSIDSRMFENL 346 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--------TTTTTCTTCCEEECCSS-CCCEECGGGGTTC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh--------hHhcCcccCCEEECCCC-ccCCcChhHhcCc
Confidence 44444444443222211234556666666666664443321 12345778888888777 555542 34567
Q ss_pred cCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCC
Q 046682 113 QILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLK 188 (236)
Q Consensus 113 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~ 188 (236)
++|++|+++++. +..+.. ..+..+++|++|++++. +++.++... ..+++|+.|++.+++=-.
T Consensus 347 ~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 347 DKLEVLDLSYNH-IRALGD------------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCEEECCCCc-ccccCh------------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 888888887763 443321 35567899999999984 577776543 468999999999875433
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.60 E-value=4.5e-08 Score=82.48 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=111.1
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccc
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVK 82 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~ 82 (236)
.+..+.+|+.|+++......+. .... .++|+.|+++++.- ..+...++|+.|.+++|.+..+..
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~---~~~~-l~~L~~L~Ls~n~l-----~~l~~~~~L~~L~l~~n~l~~~~~------- 116 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETL---DLES-LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSC------- 116 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEE---EETT-CTTCCEEECCSSEE-----EEEEECTTCCEEECCSSCCSEEEE-------
T ss_pred HhhCCCcCCEEECCCCcCCcch---hhhh-cCCCCEEECcCCcc-----ccccCCCCcCEEECCCCccCCcCc-------
Confidence 3567888888887643221111 1122 26899999998842 334455899999999996665532
Q ss_pred ccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceecccc-----cccc--------cccccccccc
Q 046682 83 KLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVD-----KLRD--------ISEIIGSEHN 147 (236)
Q Consensus 83 ~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~-----~~~~--------~~~~~~~~~~ 147 (236)
..+++|+.|+++++ ++..+. .+..+++|++|+++++. +..+.... .... .... ....
T Consensus 117 ----~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~ 188 (317)
T 3o53_A 117 ----SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV 188 (317)
T ss_dssp ----CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC
T ss_pred ----cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc--cccc
Confidence 23788999999988 577664 35678999999998863 44432110 0000 0001 1233
Q ss_pred ccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 148 FFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 148 ~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.+++|++|+++++ +++.++.....+++|+.|+++++ +++.+|...... ++|+.+
T Consensus 189 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l-~~L~~L 242 (317)
T 3o53_A 189 VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHF 242 (317)
T ss_dssp CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEE
T ss_pred ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcC-CCCCEE
Confidence 4778888888765 45555555556788999999888 777887654332 556655
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.57 E-value=1.2e-07 Score=87.50 Aligned_cols=185 Identities=14% Similarity=0.087 Sum_probs=102.2
Q ss_pred cCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCC-C--Cccccchhhc------ccCCceeecCCccceeeec
Q 046682 6 GLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKS-A--PFNLLHLAYM------ENLQELDLEDINLEEMKID 76 (236)
Q Consensus 6 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~-~--~~~~~~l~~l------~~L~~L~i~~c~le~l~~~ 76 (236)
++++|++|++...... ..+.....-.++|+.|+++++.. . .+ ...+..+ ++|+.|++++|.+..++..
T Consensus 247 ~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp GCTTCCEEEEECCTTC--SSCCTTTTTCSSCCEEECTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred ccCCCCEEEecCCcCC--ccChHHHhcCCCCCEEECcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 7888999998754311 11112222236888999988852 2 12 1234444 8899999988855444210
Q ss_pred ccccccccCccCCCCccEEEEecCCCCC-cchhhhcccCccEEeEecccccceeccccc---c-cc--------cccccc
Q 046682 77 STEEVKKLFQSGFRSLDRVVISSCKKMK-DLTWLVFVQILKQLRIVFCTEMEEIISVDK---L-RD--------ISEIIG 143 (236)
Q Consensus 77 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~-~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~---~-~~--------~~~~~~ 143 (236)
.....+++|+.|+++++ .+. .++.+..+++|++|+++++. +..++..-. . .. ..+..
T Consensus 324 -------~~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp- 393 (636)
T 4eco_A 324 -------TSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIP- 393 (636)
T ss_dssp -------HHHTTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCC-
T ss_pred -------hhhccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccc-
Confidence 02345677777777776 455 45545566777777776653 222221100 0 00 00000
Q ss_pred ccc--cccCcccEEeccccccccccCCCC-------CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 144 SEH--NFFAQLESLTIKWGRNLKSVYPNP-------LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 144 ~~~--~~~p~L~~L~l~~~~~L~~i~~~~-------~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
..+ ..+++|++|+++++.--..++... ..+++|+.|.++++ ++..+|.......++|+.+
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEE
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEE
Confidence 111 234589999998765322222222 25679999999998 6778886432222445544
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.57 E-value=1.7e-07 Score=85.28 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=92.4
Q ss_pred ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682 32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL 109 (236)
Q Consensus 32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l 109 (236)
++..++.|++++..-..+...++.++++|+.|++++|.++.+..+ ....+++|+.|+++++ +++.++ .+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~--------~f~~L~~L~~L~Ls~N-~l~~l~~~~f 120 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--------AYQSLSHLSTLILTGN-PIQSLALGAF 120 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------TTTTCTTCCEEECTTC-CCCEECGGGG
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh--------HhcCCCCCCEEEccCC-cCCCCCHHHh
Confidence 456889999987744444334578889999999998877766321 2346788999999887 577765 35
Q ss_pred hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC--CCCCCCCCccEEeEeCCCCC
Q 046682 110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY--PNPLPLPKLKKIQVRGCPQL 187 (236)
Q Consensus 110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L 187 (236)
..+++|++|+++++ +++.+.. ..+..+++|++|++++.. ++.+. .....+++|++|.+.++ ++
T Consensus 121 ~~L~~L~~L~Ls~N-~l~~l~~------------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l 185 (635)
T 4g8a_A 121 SGLSSLQKLVAVET-NLASLEN------------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KI 185 (635)
T ss_dssp TTCTTCCEEECTTS-CCCCSTT------------CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CC
T ss_pred cCCCCCCEEECCCC-cCCCCCh------------hhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc-cc
Confidence 67889999999887 3544431 245678889999887653 33332 22345788888888876 44
Q ss_pred CCc
Q 046682 188 KKL 190 (236)
Q Consensus 188 ~~l 190 (236)
+.+
T Consensus 186 ~~~ 188 (635)
T 4g8a_A 186 QSI 188 (635)
T ss_dssp CEE
T ss_pred ccc
Confidence 444
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.57 E-value=1e-07 Score=86.00 Aligned_cols=183 Identities=15% Similarity=0.049 Sum_probs=97.9
Q ss_pred ccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccccccc
Q 046682 5 LGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKL 84 (236)
Q Consensus 5 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~ 84 (236)
..+ +|+.|++...... .+.. ...++|+.|.+.++..... .....+++|+.|++++|.+..+... +.
T Consensus 302 ~~~-~L~~L~l~~n~~~---~l~~--~~l~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~------~~ 367 (570)
T 2z63_A 302 YNF-GWQHLELVNCKFG---QFPT--LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCC------SQ 367 (570)
T ss_dssp SCC-CCSEEEEESCBCS---SCCB--CBCSSCCEEEEESCBSCCB--CCCCBCTTCCEEECCSSCCBEEEEE------EH
T ss_pred ccC-CccEEeeccCccc---ccCc--ccccccCEEeCcCCccccc--cccccCCCCCEEeCcCCccCccccc------cc
Confidence 345 7888888755433 2222 1237899999999865322 2226789999999998854433200 00
Q ss_pred CccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccc-----ccccc--------ccccccccccccC
Q 046682 85 FQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISV-----DKLRD--------ISEIIGSEHNFFA 150 (236)
Q Consensus 85 ~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~-----~~~~~--------~~~~~~~~~~~~p 150 (236)
....+++|+.|++++| .+..++ .+..+++|++|++++|.- ..+... ..... ........+..++
T Consensus 368 ~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp HHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred cccccCccCEEECCCC-ccccccccccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 1123455555555554 222221 133444455554444321 111000 00000 0000002456788
Q ss_pred cccEEeccccccc-cccCCCCCCCCCccEEeEeCCCCCCCc-CCCCCCCCCcceEEe
Q 046682 151 QLESLTIKWGRNL-KSVYPNPLPLPKLKKIQVRGCPQLKKL-PVNSSSVKERRVVIE 205 (236)
Q Consensus 151 ~L~~L~l~~~~~L-~~i~~~~~~~p~L~~L~i~~C~~L~~l-p~~~~~~~~~l~~~~ 205 (236)
+|++|++.++.-. ..++.....+++|+.|++++| +++.+ |..... .++|+.+.
T Consensus 446 ~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~ 500 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNS-LSSLQVLN 500 (570)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTT-CTTCCEEE
T ss_pred cCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhc-ccCCCEEe
Confidence 9999999887643 245555667899999999998 45555 433322 25566553
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=9.4e-08 Score=85.49 Aligned_cols=185 Identities=13% Similarity=0.087 Sum_probs=103.8
Q ss_pred CcCCcceeEEeeehHHHH-HHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeec---------
Q 046682 7 LKHLNVLSWSFGSSLAVQ-KFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKID--------- 76 (236)
Q Consensus 7 L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~--------- 76 (236)
..+|+.|+++......+. ..+ . -.++|+.|+++++.-... ..+..+++|+.|++++|.+..+...
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~--~-~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL--A-PFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG--T-TCTTCCEEECTTSCCEEE--EECTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHH--h-CCCCCCEEEeeCCCCCCC--cccccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence 347888887754322221 111 1 126889999988854322 3367788888888888744433211
Q ss_pred ccccccccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccc-----ccc--------cccc
Q 046682 77 STEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDK-----LRD--------ISEI 141 (236)
Q Consensus 77 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~-----~~~--------~~~~ 141 (236)
...-.+. ....+++|+.|+++++ .+..+. .+..+++|++|+++++. +..++...- ... ....
T Consensus 108 ~N~l~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRV-SCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCE-EECCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCC-CccccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc
Confidence 1100001 1234677888888776 465543 24567788888887653 333221100 000 0000
Q ss_pred ccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 142 IGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 142 ~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.....+++|++|+++++ .+..++.....+++|+.|+++++ ++..+|...... ++|+.+
T Consensus 185 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l-~~L~~L 242 (487)
T 3oja_A 185 --KGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHF 242 (487)
T ss_dssp --ECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-TTCCEE
T ss_pred --cccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccC-CCCCEE
Confidence 12335778888888765 45666555556788999999886 577777664332 555555
No 84
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.55 E-value=8e-07 Score=70.98 Aligned_cols=130 Identities=10% Similarity=0.133 Sum_probs=85.6
Q ss_pred cccceEEEEeccCCCCccc-cchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--h
Q 046682 33 VSITQFVLVYHCKSAPFNL-LHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--L 109 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~-~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l 109 (236)
+..++.|++++..-..+.. ..+..+++|+.|+++++.+..+.. .....+++|+.|+++++ .+..++. +
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 101 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--------GAFEGASGVNEILLTSN-RLENVQHKMF 101 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT--------TTTTTCTTCCEEECCSS-CCCCCCGGGG
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH--------HHhCCCCCCCEEECCCC-ccCccCHhHh
Confidence 3567888888775333311 236778888888888886665532 12356788888888877 5666643 5
Q ss_pred hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCC
Q 046682 110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~ 185 (236)
..+++|++|+++++. +..+.. ..+..+++|++|++++. .++.+.. ....+++|+.|++.+.+
T Consensus 102 ~~l~~L~~L~Ls~N~-l~~~~~------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 102 KGLESLKTLMLRSNR-ITCVGN------------DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSSCCEEECTTSC-CCCBCT------------TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcCCCEEECCCCc-CCeECH------------hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 678888888888763 433321 24557788888888764 4555533 34457888888877653
No 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.54 E-value=3.7e-07 Score=78.29 Aligned_cols=137 Identities=21% Similarity=0.187 Sum_probs=97.8
Q ss_pred ccccceEEEEeccCCCCccccchh-hcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--
Q 046682 32 LVSITQFVLVYHCKSAPFNLLHLA-YMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW-- 108 (236)
Q Consensus 32 l~~~L~~L~l~~c~~~~~~~~~l~-~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-- 108 (236)
++..++.|++++..-..+....+. .+++|+.|+++++.+..+..+ ....+++|+.|+++++ +++.++.
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~ 107 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE--------AFVPVPNLRYLDLSSN-HLHTLDEFL 107 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSS-CCCEECTTT
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh--------hccCCCCCCEEECCCC-cCCcCCHHH
Confidence 346788999998854333223344 789999999999877666321 2356889999999887 5777653
Q ss_pred hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCC----CCCCCccEEeEeCC
Q 046682 109 LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP----LPLPKLKKIQVRGC 184 (236)
Q Consensus 109 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~----~~~p~L~~L~i~~C 184 (236)
+..+++|++|+++++. +..+.. ..+..+++|+.|++++. .++.++... ..+++|+.|++++.
T Consensus 108 ~~~l~~L~~L~L~~N~-i~~~~~------------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 108 FSDLQALEVLLLYNNH-IVVVDR------------NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp TTTCTTCCEEECCSSC-CCEECT------------TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred hCCCcCCCEEECCCCc-ccEECH------------HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 5678999999998763 444421 24567899999999874 466665433 45899999999997
Q ss_pred CCCCCcCC
Q 046682 185 PQLKKLPV 192 (236)
Q Consensus 185 ~~L~~lp~ 192 (236)
+++.+|.
T Consensus 174 -~l~~l~~ 180 (361)
T 2xot_A 174 -KLKKLPL 180 (361)
T ss_dssp -CCCCCCH
T ss_pred -CCCccCH
Confidence 6777774
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.53 E-value=3e-07 Score=75.65 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=58.0
Q ss_pred ccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682 32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL 109 (236)
Q Consensus 32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l 109 (236)
+++.++.|+++++.-..+....+.++++|+.|++++|.+..+... ....+++|+.|+++++ .+..++ .+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--------AYQSLSHLSTLILTGN-PIQSLALGAF 96 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT--------TTTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH--------HccCCcCCCEEECCCC-ccCccChhhh
Confidence 346899999998854444323578899999999999966655321 2345778888888776 455543 35
Q ss_pred hcccCccEEeEecc
Q 046682 110 VFVQILKQLRIVFC 123 (236)
Q Consensus 110 ~~lp~L~~L~i~~C 123 (236)
..+++|++|++.++
T Consensus 97 ~~l~~L~~L~l~~n 110 (276)
T 2z62_A 97 SGLSSLQKLVAVET 110 (276)
T ss_dssp TTCTTCCEEECTTS
T ss_pred cCCccccEEECCCC
Confidence 56788888888765
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.53 E-value=7.5e-08 Score=89.01 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=96.4
Q ss_pred ccccCcCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCC--CccccchhhcccCCceeecCCccceeeeccccc
Q 046682 3 ELLGLKHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSA--PFNLLHLAYMENLQELDLEDINLEEMKIDSTEE 80 (236)
Q Consensus 3 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~ 80 (236)
.+.++.+|+.|+++......+.. ......+.|+.|.+.++.-. ......+..+++|+.|++++|.+..+..+
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~---- 498 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTR--NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD---- 498 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCT--TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT----
T ss_pred cccCcccccEEecCCCCcceeCh--hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh----
Confidence 45677888888876433111100 01112368888999887532 12123467788899999988865544221
Q ss_pred ccccCccCCCCccEEEEecCCCCCcch----------hhhcccCccEEeEecccccceeccccccccccccccccccccC
Q 046682 81 VKKLFQSGFRSLDRVVISSCKKMKDLT----------WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFA 150 (236)
Q Consensus 81 ~~~~~~~~l~~L~~L~i~~c~~l~~l~----------~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p 150 (236)
....+++|+.|+++++ .+..+. .+..+++|++|+++++ .++.+.. ..+..++
T Consensus 499 ----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~------------~~~~~l~ 560 (680)
T 1ziw_A 499 ----MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV------------EVFKDLF 560 (680)
T ss_dssp ----TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCT
T ss_pred ----hhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH------------HHccccc
Confidence 2345778888888776 455431 1456778888888765 3443331 1344566
Q ss_pred cccEEeccccccccccCCCC-CCCCCccEEeEeCCCCCCCcCC
Q 046682 151 QLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 151 ~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
+|+.|++++ .+++.++... ..+++|+.|+++++ +++.+|.
T Consensus 561 ~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~ 601 (680)
T 1ziw_A 561 ELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEK 601 (680)
T ss_dssp TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred CcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccCh
Confidence 777777754 3455555443 34667777777776 5555543
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.53 E-value=3.4e-07 Score=76.92 Aligned_cols=161 Identities=16% Similarity=0.069 Sum_probs=94.7
Q ss_pred ccceEEEEeccCCCCccccch--hhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682 34 SITQFVLVYHCKSAPFNLLHL--AYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL 109 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l--~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l 109 (236)
++|+.|+++++.-.......+ ..+++|++|+++++.+..+. ..... .....+++|+.|+++++ .+..++ .+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~---l~~~~~~~L~~L~L~~N-~l~~~~~~~~ 169 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAE---LQQWLKPGLKVLSIAQA-HSLNFSCEQV 169 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHH---HHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHH---HHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence 689999999996432211233 78899999999999655441 11000 00112389999999998 577664 35
Q ss_pred hcccCccEEeEeccccccee--c-----cccccccc---c--ccc------cccccccCcccEEeccccccccccCC--C
Q 046682 110 VFVQILKQLRIVFCTEMEEI--I-----SVDKLRDI---S--EII------GSEHNFFAQLESLTIKWGRNLKSVYP--N 169 (236)
Q Consensus 110 ~~lp~L~~L~i~~C~~L~~i--~-----~~~~~~~~---~--~~~------~~~~~~~p~L~~L~l~~~~~L~~i~~--~ 169 (236)
..+++|++|+++++.-...+ + ........ . .+. ......+++|++|++++.. +..... .
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh
Confidence 68999999999988632211 1 00000000 0 000 0011244788888887653 433321 1
Q ss_pred CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 170 PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 170 ~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
...+++|+.|+++++ +++.+|.... .+|+.+
T Consensus 249 ~~~l~~L~~L~Ls~N-~l~~ip~~~~---~~L~~L 279 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFT-GLKQVPKGLP---AKLSVL 279 (312)
T ss_dssp CCCCTTCCEEECTTS-CCSSCCSSCC---SEEEEE
T ss_pred hhhcCCCCEEECCCC-ccChhhhhcc---CCceEE
Confidence 234688999999888 5777776543 455554
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.52 E-value=5e-07 Score=77.15 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=40.8
Q ss_pred cccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 145 EHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 145 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.+..+++|++|++++. +++.++. ..|.+|+.|.+.+|.+++.+|.-.. ..+|+..
T Consensus 197 ~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~--l~~L~~l 251 (350)
T 4ay9_X 197 VFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEK--LVALMEA 251 (350)
T ss_dssp TTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTT--CCSCCEE
T ss_pred HhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchh--CcChhhC
Confidence 3467789999999876 5777764 3478999999999999999995322 2555555
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.52 E-value=8.3e-07 Score=74.97 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=35.6
Q ss_pred ccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 146 HNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 146 ~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
+..+++|++|+++++ .++.+.. ....+++|+.|+++++ ++..+|...... ++|+.+
T Consensus 213 l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l-~~L~~L 269 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDL-KLLQVV 269 (332)
T ss_dssp STTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGC-TTCCEE
T ss_pred hcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcC-ccCCEE
Confidence 445667777777654 3444433 2345789999999988 677888764332 555555
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.52 E-value=1.6e-06 Score=68.17 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=88.4
Q ss_pred cccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccc
Q 046682 57 MENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDK 134 (236)
Q Consensus 57 l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~ 134 (236)
.++|++|+++++.+..+... ....+++|+.|++.++ +++.++. +..+++|++|+++++ .++.+..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--- 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG--------VFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPN--- 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---
T ss_pred CCCCcEEEcCCCccCcCChh--------hhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCH---
Confidence 46899999999966554221 2356899999999987 6777653 467899999999987 3444331
Q ss_pred cccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 135 LRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 135 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
..+..+++|++|++++. .++.+... ...+++|+.|+++++ +++.+|........+|+.+
T Consensus 94 ---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 94 ---------GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp ---------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred ---------hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEE
Confidence 23567899999999875 46666654 346899999999997 6777776532223555554
No 92
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.51 E-value=1.4e-07 Score=88.83 Aligned_cols=146 Identities=11% Similarity=-0.053 Sum_probs=73.2
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeeccccc--------------c--cccCccCCCCccEEEE
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEE--------------V--KKLFQSGFRSLDRVVI 97 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~--------------~--~~~~~~~l~~L~~L~i 97 (236)
++|+.|++.+|.-.......+..+++|+.|++++|.+.......... . .+.....+++|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 56777777777432121234566777777777776332111000000 0 0111223444444444
Q ss_pred ecCCCCCc-ch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCCCCCCCC
Q 046682 98 SSCKKMKD-LT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPK 175 (236)
Q Consensus 98 ~~c~~l~~-l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~ 175 (236)
.++ .+.. ++ .+..+++|++|++++|.-...++ ..+..+++|++|+++++.-...++.....+++
T Consensus 474 ~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 474 DFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-------------KWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp CSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-------------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred cCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCC-------------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 444 2221 11 23344445555554443111111 24556778888888777544455555556788
Q ss_pred ccEEeEeCCCCCCCcCCC
Q 046682 176 LKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 176 L~~L~i~~C~~L~~lp~~ 193 (236)
|+.|++.+|+--..+|..
T Consensus 540 L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCEEECCSSEEESBCCGG
T ss_pred CCEEECCCCccCCcCChH
Confidence 888888877655556643
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.50 E-value=2.5e-07 Score=70.42 Aligned_cols=112 Identities=16% Similarity=0.188 Sum_probs=82.7
Q ss_pred hcccCCceeecCCccc--eeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc
Q 046682 56 YMENLQELDLEDINLE--EMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD 133 (236)
Q Consensus 56 ~l~~L~~L~i~~c~le--~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~ 133 (236)
..++|+.|++++|.+. .+. .....+++|+.|++.+| .++.+..+..+++|++|+++++. +...+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-- 88 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE---------GLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENR-IFGGLD-- 88 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS---------SCCGGGGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESCC-CCSCCC--
T ss_pred CcccCCEEECCCCCCChhhHH---------HHHHhCCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCCc-CchHHH--
Confidence 3478999999999654 442 12356899999999998 48877667789999999999874 333221
Q ss_pred ccccccccccccccccCcccEEeccccccccccC--CCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 134 KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY--PNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 134 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
.....+++|++|+++++ .++.++ .....+++|+.|+++++ .+..+|.
T Consensus 89 ----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~ 137 (168)
T 2ell_A 89 ----------MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLND 137 (168)
T ss_dssp ----------HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTT
T ss_pred ----------HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHH
Confidence 12345899999999987 566654 23456899999999998 5666665
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.50 E-value=2.7e-07 Score=81.83 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=73.0
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ 113 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp 113 (236)
++|+.|+++++.-..+ +.+..+++|++|++++|.++.+. ..+++|+.|+++++ .+..++.+..++
T Consensus 131 ~~L~~L~L~~n~l~~l--p~~~~l~~L~~L~l~~N~l~~lp------------~~~~~L~~L~L~~n-~l~~l~~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKLP------------DLPPSLEFIAAGNN-QLEELPELQNLP 195 (454)
T ss_dssp TTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSS-CCSSCCCCTTCT
T ss_pred CCCCEEECcCCCCCCC--cccCCCCCCCEEECCCCcCcccC------------CCcccccEEECcCC-cCCcCccccCCC
Confidence 4566666665533333 34566666677766666443321 11346777777766 566665566677
Q ss_pred CccEEeEecccccceeccccccc--------cccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682 114 ILKQLRIVFCTEMEEIISVDKLR--------DISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 114 ~L~~L~i~~C~~L~~i~~~~~~~--------~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 185 (236)
+|++|+++++. +..+....... ...+. ..+..+++|++|+++++ .++.++. .+++|+.|++.+|
T Consensus 196 ~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~l--p~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N- 267 (454)
T 1jl5_A 196 FLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN- 267 (454)
T ss_dssp TCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-
T ss_pred CCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcc--cccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-
Confidence 77777776653 22221100000 00011 23456778888888764 3444432 2467777777776
Q ss_pred CCCCcCC
Q 046682 186 QLKKLPV 192 (236)
Q Consensus 186 ~L~~lp~ 192 (236)
++..+|.
T Consensus 268 ~l~~l~~ 274 (454)
T 1jl5_A 268 YLTDLPE 274 (454)
T ss_dssp CCSCCCC
T ss_pred cccccCc
Confidence 3555554
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.46 E-value=6.7e-07 Score=80.98 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=48.8
Q ss_pred CCCccEEEEecCCCCCcchhhhcc-cCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC
Q 046682 89 FRSLDRVVISSCKKMKDLTWLVFV-QILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY 167 (236)
Q Consensus 89 l~~L~~L~i~~c~~l~~l~~l~~l-p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~ 167 (236)
+++|+.|+++++ .+..... ..+ ++|++|+++++ .++.+. ..+..+++|++|++++. +++.++
T Consensus 427 l~~L~~L~l~~n-~l~~~~~-~~l~~~L~~L~L~~N-~l~~ip-------------~~~~~l~~L~~L~L~~N-~l~~l~ 489 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGSVF-RCLPPKVKVLDLHNN-RIMSIP-------------KDVTHLQALQELNVASN-QLKSVP 489 (562)
T ss_dssp CTTCCEEECCSS-CCCGGGG-SSCCTTCSEEECCSS-CCCCCC-------------TTTTSSCCCSEEECCSS-CCCCCC
T ss_pred cccCCEEECCCC-CCCcchh-hhhcCcCCEEECCCC-cCcccC-------------hhhcCCCCCCEEECCCC-CCCCCC
Confidence 455555555554 2322111 112 45666666555 344332 23447899999999875 577777
Q ss_pred CC-CCCCCCccEEeEeCCC
Q 046682 168 PN-PLPLPKLKKIQVRGCP 185 (236)
Q Consensus 168 ~~-~~~~p~L~~L~i~~C~ 185 (236)
.. ...+++|+.|++.+.|
T Consensus 490 ~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTSTTTCTTCCCEECCSCC
T ss_pred HHHHhcCCCCCEEEecCCC
Confidence 65 5568899999988875
No 96
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=1.6e-07 Score=72.72 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=34.8
Q ss_pred CCCCccEEEEecCCCCCcc--hhhhc----ccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 88 GFRSLDRVVISSCKKMKDL--TWLVF----VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l--~~l~~----lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
.+++|++|++++|..+++- ..+.. .++|++|+|++|.++++-.- ..+..+++|++|.|++|+
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------------~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI------------IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH------------HHGGGCTTCCEEEEESCT
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH------------HHHhcCCCCCEEECCCCC
Confidence 4566666666666655542 12222 23566666666665543210 123345666666666666
Q ss_pred cccc
Q 046682 162 NLKS 165 (236)
Q Consensus 162 ~L~~ 165 (236)
+++.
T Consensus 151 ~Itd 154 (176)
T 3e4g_A 151 GVKE 154 (176)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 5554
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.44 E-value=9.1e-07 Score=81.73 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=48.7
Q ss_pred cCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccccc
Q 046682 87 SGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLK 164 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 164 (236)
..+++|+.|+++++ ++..++ .+..+++|++|++++|. +..+.. ..+..+++|++|++.++. ++
T Consensus 94 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------~~~~~l~~L~~L~L~~n~-l~ 158 (680)
T 1ziw_A 94 AFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNG-LSSTKL------------GTQVQLENLQELLLSNNK-IQ 158 (680)
T ss_dssp TTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSC-CSCCCC------------CSSSCCTTCCEEECCSSC-CC
T ss_pred ccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCc-ccccCc------------hhhcccccCCEEEccCCc-cc
Confidence 34556666666655 344443 24456666666666552 221110 234467788888887653 33
Q ss_pred ccCCC---CCCCCCccEEeEeCCCCCCCcCC
Q 046682 165 SVYPN---PLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 165 ~i~~~---~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
.+... ....++|+.|+++++ +++.++.
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~ 188 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSN-QIKEFSP 188 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTC-CCCCBCT
T ss_pred ccCHHHhhccccccccEEECCCC-cccccCh
Confidence 33221 224578888888887 4555443
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.44 E-value=6.9e-07 Score=82.33 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccccccccc-----ccccccccccCcccEEecccccc
Q 046682 88 GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDIS-----EIIGSEHNFFAQLESLTIKWGRN 162 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~-----~~~~~~~~~~p~L~~L~l~~~~~ 162 (236)
.+++|+.|+++++ .++.++. .+++|+.|++.++ .++.+.......... .+. ..-..+++|++|+++++ +
T Consensus 179 ~~~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~L~-~lp~~l~~L~~L~Ls~N-~ 252 (622)
T 3g06_A 179 LPSGLQELSVSDN-QLASLPT--LPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGN-R 252 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS-C
T ss_pred cCCCCcEEECCCC-CCCCCCC--ccchhhEEECcCC-cccccCCCCCCCCEEEccCCccC-cCCCCCCcCcEEECCCC-C
Confidence 3467777777776 4555432 2456666666654 222222110000000 000 00034567777777765 5
Q ss_pred ccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 163 LKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 163 L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
++.++. .+++|+.|++++| +++.+|...... ++|+.+
T Consensus 253 L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l-~~L~~L 289 (622)
T 3g06_A 253 LTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL-SSETTV 289 (622)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS-CTTCEE
T ss_pred CCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc-cccCEE
Confidence 555554 4677888888777 666777543322 444444
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=7.9e-07 Score=81.06 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=66.5
Q ss_pred cceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccC
Q 046682 35 ITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQI 114 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~ 114 (236)
.|+.|.++++.-..+ +.+..+++|+.|.+++|.+..++ .....+++|+.|+++++ .++.++.+..+++
T Consensus 442 ~L~~L~Ls~n~l~~l--p~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALP---------PALAALRCLEVLQASDN-ALENVDGVANLPR 509 (567)
T ss_dssp TCSEEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCCCC---------GGGGGCTTCCEEECCSS-CCCCCGGGTTCSS
T ss_pred CceEEEecCCCCCCC--cCccccccCcEeecCcccccccc---------hhhhcCCCCCEEECCCC-CCCCCcccCCCCC
Confidence 466677766643333 34666677777777766544442 23345667777777665 5666665666777
Q ss_pred ccEEeEecccccceec-cccccccccccccccccccCcccEEeccccccccccCCCCC----CCCCccEE
Q 046682 115 LKQLRIVFCTEMEEII-SVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPL----PLPKLKKI 179 (236)
Q Consensus 115 L~~L~i~~C~~L~~i~-~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~----~~p~L~~L 179 (236)
|++|+++++ .+..+. + ..+..+++|+.|++++.+ +..++.... .+|+|+.|
T Consensus 510 L~~L~Ls~N-~l~~~~~p------------~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 510 LQELLLCNN-RLQQSAAI------------QPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCEEECCSS-CCCSSSTT------------GGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred CcEEECCCC-CCCCCCCc------------HHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 777777664 333331 1 244566677777776543 443332211 25566655
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.43 E-value=3.4e-06 Score=71.89 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=99.0
Q ss_pred cccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeeccccc--c-------------c--ccCccCCCCccE
Q 046682 33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEE--V-------------K--KLFQSGFRSLDR 94 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~--~-------------~--~~~~~~l~~L~~ 94 (236)
+.+++.|++++..-..+....+.++++|++|++++| -++.+..+.... . . +.....+++|+.
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 457777777776433342233567777777777777 334332111100 0 0 112345678888
Q ss_pred EEEecCCCCCcchhh--hcccCccEEeEecccccceecccccc-----cc--------ccccccccccccCcccEEeccc
Q 046682 95 VVISSCKKMKDLTWL--VFVQILKQLRIVFCTEMEEIISVDKL-----RD--------ISEIIGSEHNFFAQLESLTIKW 159 (236)
Q Consensus 95 L~i~~c~~l~~l~~l--~~lp~L~~L~i~~C~~L~~i~~~~~~-----~~--------~~~~~~~~~~~~p~L~~L~l~~ 159 (236)
|++.++ ++..++.. ....++..|++.++.++..+...... .. ..++. ......++|+.|.+.+
T Consensus 109 L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~-~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 109 LLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-NSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-TTSSTTEEEEEEECTT
T ss_pred cccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-hhhccccchhHHhhcc
Confidence 888776 46555432 24456677777777777666432100 00 00111 2233456889999988
Q ss_pred cccccccCCCC-CCCCCccEEeEeCCCCCCCcCCCCCCCCCcceE
Q 046682 160 GRNLKSVYPNP-LPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVV 203 (236)
Q Consensus 160 ~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~ 203 (236)
...++.++.+. ..+++|+.|+++++ +++.+|.+......+|+.
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEEC
T ss_pred CCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhh
Confidence 88999998764 46889999999998 799999764432234433
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.40 E-value=3.1e-07 Score=68.44 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=82.4
Q ss_pred hcccCCceeecCCccc--eeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc
Q 046682 56 YMENLQELDLEDINLE--EMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD 133 (236)
Q Consensus 56 ~l~~L~~L~i~~c~le--~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~ 133 (236)
..++|+.|++++|.+. .+. .....+++|+.|++++| .++.+..+..+++|++|+++++. +...++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-- 81 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLE---------GLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLE-- 81 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCC---------SCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTH--
T ss_pred CCccCeEEEccCCcCChhHHH---------HHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHH--
Confidence 3478999999999554 332 23356899999999998 68877667889999999999874 333211
Q ss_pred ccccccccccccccccCcccEEeccccccccccC--CCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 134 KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY--PNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 134 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
.....+++|++|+++++. ++.++ .....+++|+.|++++| ++..+|.
T Consensus 82 ----------~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 82 ----------VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp ----------HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred ----------HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 133458999999999864 55543 33456899999999998 5666665
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=2.3e-06 Score=81.72 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCCccEEEEecCCCCCcchh-hh--cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc----
Q 046682 89 FRSLDRVVISSCKKMKDLTW-LV--FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR---- 161 (236)
Q Consensus 89 l~~L~~L~i~~c~~l~~l~~-l~--~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~---- 161 (236)
+++|+.|++++| ++..++. +. .+++|+.|+++++ .+..++ ..+..+++|+.|.+++.+
T Consensus 727 l~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp-------------~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 727 TYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP-------------TQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCC-------------CGGGGCTTCCEEECCCCBCTTC
T ss_pred cCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccc-------------hhhhcCCCCCEEECCCCCCccc
Confidence 347788888777 5666543 32 6778888888765 333332 244577888888887633
Q ss_pred --cccccCCCCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 162 --NLKSVYPNPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 162 --~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
-...++.....+++|+.|++++|. +..+|.... ++|+.+
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~---~~L~~L 832 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT---PQLYIL 832 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC---SSSCEE
T ss_pred ccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc---CCCCEE
Confidence 223344444567888888888884 477887633 355544
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.38 E-value=7e-07 Score=79.16 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=40.7
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ 113 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp 113 (236)
.+|+.|+++++.-..+ +.+..+++|+.|++++|.+..+. ...++|+.|+++++ .+..++.+..++
T Consensus 173 ~~L~~L~L~~n~l~~l--~~~~~l~~L~~L~l~~N~l~~l~------------~~~~~L~~L~l~~n-~l~~lp~~~~l~ 237 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLP------------DLPLSLESIVAGNN-ILEELPELQNLP 237 (454)
T ss_dssp TTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCC------------CCCTTCCEEECCSS-CCSSCCCCTTCT
T ss_pred ccccEEECcCCcCCcC--ccccCCCCCCEEECCCCcCCcCC------------CCcCcccEEECcCC-cCCcccccCCCC
Confidence 4666666666543333 34566677777777666333221 01235666666655 444554455566
Q ss_pred CccEEeEecc
Q 046682 114 ILKQLRIVFC 123 (236)
Q Consensus 114 ~L~~L~i~~C 123 (236)
+|++|+++++
T Consensus 238 ~L~~L~l~~N 247 (454)
T 1jl5_A 238 FLTTIYADNN 247 (454)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 6666666554
No 104
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=1.8e-07 Score=72.42 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=65.5
Q ss_pred CccEEEEecCCCCCcc--hhhhcccCccEEeEecccccceeccccccccccccccccccc----cCcccEEecccccccc
Q 046682 91 SLDRVVISSCKKMKDL--TWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNF----FAQLESLTIKWGRNLK 164 (236)
Q Consensus 91 ~L~~L~i~~c~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~----~p~L~~L~l~~~~~L~ 164 (236)
+|++|++++|. +++. ..+..+++|++|++++|..+++-.- ..+.. -++|++|+|++|++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------------~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------------ERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------------HHHHhcccccCCCCEEEcCCCCcCC
Confidence 69999999996 7763 3466899999999999998865320 12222 2589999999999877
Q ss_pred ccCCC-CCCCCCccEEeEeCCCCCCCc
Q 046682 165 SVYPN-PLPLPKLKKIQVRGCPQLKKL 190 (236)
Q Consensus 165 ~i~~~-~~~~p~L~~L~i~~C~~L~~l 190 (236)
.-... ...+++|++|.+++|++++..
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 53221 235899999999999998863
No 105
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.36 E-value=1e-06 Score=83.76 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=49.5
Q ss_pred cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCC-CCccccchhhcccCCceeecCCccceeeecccccccccCc
Q 046682 8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKS-APFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQ 86 (236)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~-~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~ 86 (236)
.+|+.|+++......+. .....-.++|+.|+++++.. ..+....+.++++|+.|.+++|.+..+.. ...
T Consensus 24 ~~l~~LdLs~N~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p--------~~~ 93 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP--------DAF 93 (844)
T ss_dssp TTCCEEEEESCCCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT--------TSS
T ss_pred CCcCEEECCCCcCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH--------hHc
Confidence 56667776643211110 01111225777777777733 22222345667777777777764443321 122
Q ss_pred cCCCCccEEEEecCCCCCc-ch---hhhcccCccEEeEecc
Q 046682 87 SGFRSLDRVVISSCKKMKD-LT---WLVFVQILKQLRIVFC 123 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~-l~---~l~~lp~L~~L~i~~C 123 (236)
..+++|+.|++++| .+.. ++ ++..+++|++|+++++
T Consensus 94 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 94 QGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp CSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred cCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC
Confidence 33455555555554 2332 11 1334555555555544
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.35 E-value=1.7e-06 Score=82.24 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=85.7
Q ss_pred ccccceEEEEeccCCCCccccchhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcc--hh
Q 046682 32 LVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL--TW 108 (236)
Q Consensus 32 l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l--~~ 108 (236)
++++++.|+++++.-..+....+.++++|+.|++++| ....+.. .....+++|+.|+++++ ++..+ ..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~--------~~f~~L~~L~~L~Ls~N-~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK--------EAFRNLPNLRILDLGSS-KIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECT--------TTTSSCTTCCEEECTTC-CCCEECTTS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCH--------HHhcCCCCCCEEECCCC-cCcccCHhH
Confidence 6689999999998654443356889999999999999 6554422 23467899999999988 56665 24
Q ss_pred hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeCC
Q 046682 109 LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRGC 184 (236)
Q Consensus 109 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C 184 (236)
+..+++|++|++++|.--..++.. ..+..+++|++|+++++. +..+.. ....+++|+.|++.++
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~-----------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKD-----------GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTT-----------CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccCCcccCEeeCcCCCCCcccccC-----------ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence 678999999999988432222211 123455666666665542 222211 1234555666655554
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.33 E-value=4.9e-07 Score=75.77 Aligned_cols=161 Identities=14% Similarity=0.052 Sum_probs=86.3
Q ss_pred ccceEEEEeccCCCCccccch--hhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hh
Q 046682 34 SITQFVLVYHCKSAPFNLLHL--AYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WL 109 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l--~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l 109 (236)
++|+.|++.++.-.......+ ..+++|++|+++++.+........ ......+++|+.|+++++ .+..++ .+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~----~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~ 165 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA----ELQQWLKPGLKVLSIAQA-HSPAFSCEQV 165 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH----HHHTTBCSCCCEEEEECC-SSCCCCTTSC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH----HHHhhhccCCCEEEeeCC-CcchhhHHHh
Confidence 469999999886432222333 678889999998884332100000 001124667777777766 344443 23
Q ss_pred hcccCccEEeEecccccce--ec-----ccccccc--------cccccc--c-cccccCcccEEecccccccccc-CCCC
Q 046682 110 VFVQILKQLRIVFCTEMEE--II-----SVDKLRD--------ISEIIG--S-EHNFFAQLESLTIKWGRNLKSV-YPNP 170 (236)
Q Consensus 110 ~~lp~L~~L~i~~C~~L~~--i~-----~~~~~~~--------~~~~~~--~-~~~~~p~L~~L~l~~~~~L~~i-~~~~ 170 (236)
..+++|++|+++++.-... +. ....... ...... . ....+++|++|++++.. +..+ +...
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~ 244 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA 244 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH
Confidence 4667777777776642211 00 0000000 000000 0 12356888999988754 4443 3222
Q ss_pred CC---CCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 171 LP---LPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 171 ~~---~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.. +++|++|+++++ +++.+|.... ++|+.+
T Consensus 245 ~~~~~~~~L~~L~Ls~N-~l~~lp~~~~---~~L~~L 277 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFA-GLEQVPKGLP---AKLRVL 277 (310)
T ss_dssp SSCCCCTTCCCEECCSS-CCCSCCSCCC---SCCSCE
T ss_pred HhccCcCcCCEEECCCC-CCCchhhhhc---CCCCEE
Confidence 33 379999999887 6778887543 344444
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.33 E-value=9.6e-06 Score=64.63 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=87.0
Q ss_pred ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhhcccCccEEeEecccccceecccccc
Q 046682 58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVFCTEMEEIISVDKL 135 (236)
Q Consensus 58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~ 135 (236)
++|+.|+++++.++.+... ....+++|+.|+++++ .+..+. .+..+++|++|+++++ .++.+..
T Consensus 32 ~~l~~L~l~~n~i~~i~~~--------~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~---- 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG--------AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPK---- 97 (220)
T ss_dssp TTCCEEECCSSCCCEECTT--------SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCT----
T ss_pred cCCCEEECCCCcCCCcCHh--------HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCH----
Confidence 6899999999977665321 3356889999999987 577662 4678999999999886 4544431
Q ss_pred ccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
..+..+++|++|++++. .++.+... ...+++|+.|+++++ +++.+|.+......+|+.+
T Consensus 98 --------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 98 --------SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred --------hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEE
Confidence 23457899999999875 45655443 446899999999997 6777776432222444443
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.32 E-value=7.2e-07 Score=68.55 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=82.5
Q ss_pred hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccc
Q 046682 54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVD 133 (236)
Q Consensus 54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~ 133 (236)
.....+|+.|.+++|.+..+. .. ....++|+.|+++++ .+..+..+..+++|++|+++++ .+..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~--~~-------~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~-- 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIE--NL-------GATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGE-- 81 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCC--CG-------GGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECS--
T ss_pred cCCcCCceEEEeeCCCCchhH--Hh-------hhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCc--
Confidence 445678999999999655441 11 122459999999998 6887777788999999999987 3555431
Q ss_pred ccccccccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 134 KLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 134 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
.....+++|++|++++. .+..++. ....+++|+.|.+.+++ +..+|..
T Consensus 82 ----------~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~ 131 (176)
T 1a9n_A 82 ----------GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHY 131 (176)
T ss_dssp ----------CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTH
T ss_pred ----------chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhH
Confidence 12357899999999876 3455554 34468999999999985 5566653
No 110
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.31 E-value=5.1e-06 Score=63.64 Aligned_cols=105 Identities=20% Similarity=0.232 Sum_probs=66.1
Q ss_pred ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682 58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL 135 (236)
Q Consensus 58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~ 135 (236)
++|+.|.++++.+..+... ....+++|+.|+++++ ++..++. +..+++|++|+++++ .++.+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---- 93 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG--------VFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN---- 93 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred CCCcEEEeCCCcccEeCHH--------HhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH----
Confidence 5778888877755443211 1245677888888776 5666543 456778888888765 3433321
Q ss_pred ccccccccccccccCcccEEeccccccccccCCCC-CCCCCccEEeEeCCC
Q 046682 136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNP-LPLPKLKKIQVRGCP 185 (236)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~-~~~p~L~~L~i~~C~ 185 (236)
..+..+++|++|++++. .++.++... ..+++|+.|++.+.+
T Consensus 94 --------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 --------GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 13456778888888765 566665543 347788888877763
No 111
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.31 E-value=8.3e-07 Score=81.79 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred ccCcccEEeccccccccccCCCCCCCCCccEEeEeCCCC
Q 046682 148 FFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCPQ 186 (236)
Q Consensus 148 ~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~ 186 (236)
.+++|+.|+++++ +++.++.....+++|+.|++.+++-
T Consensus 259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 5688999999886 6777776666789999999999853
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.29 E-value=1.4e-06 Score=79.13 Aligned_cols=148 Identities=13% Similarity=0.109 Sum_probs=88.4
Q ss_pred ccceEEEEeccCCC-CccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch--hhh
Q 046682 34 SITQFVLVYHCKSA-PFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT--WLV 110 (236)
Q Consensus 34 ~~L~~L~l~~c~~~-~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~--~l~ 110 (236)
..|+.+.+.++... ......+..+++++.+.++.+.+..+.. .....+++|+.|+++++.....+. .+.
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~--------~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCT--------TTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccc--------cccccchhhhhhhhhhcccccccCchhhh
Confidence 57777777766432 1222345677788888887774443311 122456778888887765444322 245
Q ss_pred cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCCCCCCC
Q 046682 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGCPQLKK 189 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~ 189 (236)
.+++|++|++++| +++.+++ ..+..+++|++|+|++. +++.+... ...+++|+.|+++++ ++..
T Consensus 492 ~l~~L~~L~Ls~N-~L~~l~~------------~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~ 556 (635)
T 4g8a_A 492 ELRNLTFLDLSQC-QLEQLSP------------TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMT 556 (635)
T ss_dssp TCTTCCEEECTTS-CCCEECT------------TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCB
T ss_pred hccccCEEECCCC-ccCCcCh------------HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCC
Confidence 6788888888877 4555542 24556788888888765 46665543 335778888888876 5555
Q ss_pred cCCCCC-CCCCcceEE
Q 046682 190 LPVNSS-SVKERRVVI 204 (236)
Q Consensus 190 lp~~~~-~~~~~l~~~ 204 (236)
++.... ..+.+|+.+
T Consensus 557 ~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFL 572 (635)
T ss_dssp CCSSCTTCCCTTCCEE
T ss_pred CCHHHHHhhhCcCCEE
Confidence 544322 222345544
No 113
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.28 E-value=3.6e-06 Score=64.51 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=78.3
Q ss_pred cccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hh
Q 046682 33 VSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LV 110 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~ 110 (236)
++.++.|.+.++.-..+....+..+++|+.|+++++.+..+... ....+++|+.|+++++ +++.++. +.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 97 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG--------VFDKLTKLTILYLHEN-KLQSLPNGVFD 97 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh--------HccCCCccCEEECCCC-CccccCHHHhh
Confidence 46899999998864444323467889999999999966655221 2356889999999987 6777654 56
Q ss_pred cccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 111 FVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 111 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
.+++|++|+++++ .++.+.. ..+..+++|++|++.+.+
T Consensus 98 ~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 98 KLTQLKELALDTN-QLKSVPD------------GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSC
T ss_pred CCcccCEEECcCC-cceEeCH------------HHhcCCcccCEEEecCCC
Confidence 7899999999887 5554432 134568999999998764
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.25 E-value=9.2e-08 Score=82.61 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=20.3
Q ss_pred cccCcccEEecccccccccc-----CCCC--CCCCCccEEeEeCCC
Q 046682 147 NFFAQLESLTIKWGRNLKSV-----YPNP--LPLPKLKKIQVRGCP 185 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~i-----~~~~--~~~p~L~~L~i~~C~ 185 (236)
..+++|++|.++++. +... +... ..+++|+.|.+++|.
T Consensus 241 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 241 KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 455666666666554 2211 1111 236777777777773
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.22 E-value=2.8e-07 Score=83.52 Aligned_cols=111 Identities=18% Similarity=0.177 Sum_probs=54.9
Q ss_pred cCcCCcceeEEeee--hHHHHHHhcCCcccccceEEEEeccCCC-Cccccc-hhhcccCCceeecCCccceeeecccccc
Q 046682 6 GLKHLNVLSWSFGS--SLAVQKFLKYPKLVSITQFVLVYHCKSA-PFNLLH-LAYMENLQELDLEDINLEEMKIDSTEEV 81 (236)
Q Consensus 6 ~L~~L~~L~i~~~~--~~~l~~l~~~~~l~~~L~~L~l~~c~~~-~~~~~~-l~~l~~L~~L~i~~c~le~l~~~~~~~~ 81 (236)
.+.+|+.|+++.+. ...+..+... .++|+.|++.+|... ...+.. ..++++|++|++++|.+........
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l--- 176 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL--- 176 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG---
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH---
Confidence 34566666665432 1223333211 247777777777431 100122 2366777777777773222111100
Q ss_pred cccCccCCCCccEEEEecCC-CCCc--chh-hhcccCccEEeEecc
Q 046682 82 KKLFQSGFRSLDRVVISSCK-KMKD--LTW-LVFVQILKQLRIVFC 123 (236)
Q Consensus 82 ~~~~~~~l~~L~~L~i~~c~-~l~~--l~~-l~~lp~L~~L~i~~C 123 (236)
......+++|+.|++++|. .+.. +.. ...+|+|++|++.+|
T Consensus 177 -~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 -SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp -GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred -HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 0112246677888777774 1211 111 234577777777766
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.19 E-value=4.7e-06 Score=76.01 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=30.5
Q ss_pred CCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccce
Q 046682 9 HLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEE 72 (236)
Q Consensus 9 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~ 72 (236)
+|+.|+++... +..+... +.++|+.|+++++.-..+ + ..+++|+.|++++|.+..
T Consensus 60 ~L~~L~Ls~n~---L~~lp~~--l~~~L~~L~Ls~N~l~~i--p--~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 60 QFSELQLNRLN---LSSLPDN--LPPQITVLEITQNALISL--P--ELPASLEYLDACDNRLST 114 (571)
T ss_dssp TCSEEECCSSC---CSCCCSC--CCTTCSEEECCSSCCSCC--C--CCCTTCCEEECCSSCCSC
T ss_pred CccEEEeCCCC---CCccCHh--HcCCCCEEECcCCCCccc--c--cccCCCCEEEccCCCCCC
Confidence 56666665332 2222221 235788888877743333 2 345777777777774433
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.17 E-value=9.7e-08 Score=86.60 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=55.8
Q ss_pred cCcCCcceeEEee---ehHHHHHHhcCCcccccceEEEEeccCCC--Cc-cccc-hhhcccCCceeecCCccceeeeccc
Q 046682 6 GLKHLNVLSWSFG---SSLAVQKFLKYPKLVSITQFVLVYHCKSA--PF-NLLH-LAYMENLQELDLEDINLEEMKIDST 78 (236)
Q Consensus 6 ~L~~L~~L~i~~~---~~~~l~~l~~~~~l~~~L~~L~l~~c~~~--~~-~~~~-l~~l~~L~~L~i~~c~le~l~~~~~ 78 (236)
.+++|+.|++..+ ....+..+... .++|+.|++.+|.-. .. .+.. ...+++|++|.+++|. ..+.....
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~---~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAAT---CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHH---CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHh---CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence 5788999988754 23345555432 258888888888511 11 0112 2356678888877663 11100000
Q ss_pred ccccccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeE
Q 046682 79 EEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRI 120 (236)
Q Consensus 79 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i 120 (236)
..-...+++|+.|++.+|..+..++ .+..+++|++|.+
T Consensus 204 ----~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 204 ----ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp ----HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred ----HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 0001225677777777765444432 2335566666653
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.16 E-value=2.7e-06 Score=79.78 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=72.0
Q ss_pred hhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccc
Q 046682 54 LAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISV 132 (236)
Q Consensus 54 l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~ 132 (236)
+..+++|+.|+++++.+..+.. ....+++|+.|+++++ ++..++ .+..+++|++|+++++. ++.++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~---------~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-- 286 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISA---------NIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLP-- 286 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCG---------GGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCC--
T ss_pred hccCCCCcEEECCCCCCCCCCh---------hhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccC--
Confidence 5567778888888775444421 2235778888888776 566664 35678888888887764 44443
Q ss_pred cccccccccccccccccCcccEEeccccccccccCCCCCCCCCccEEeEeCCC
Q 046682 133 DKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 133 ~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~p~L~~L~i~~C~ 185 (236)
..+..+++|++|+|+++ .+..++.....+++|+.|.+++++
T Consensus 287 -----------~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 287 -----------AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp -----------SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred -----------hhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 24557788888888765 566776666677888888888774
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.16 E-value=1.9e-07 Score=80.68 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=25.9
Q ss_pred ccCcccEEeccccccccc-----cCCCC-CCCCCccEEeEeCCC
Q 046682 148 FFAQLESLTIKWGRNLKS-----VYPNP-LPLPKLKKIQVRGCP 185 (236)
Q Consensus 148 ~~p~L~~L~l~~~~~L~~-----i~~~~-~~~p~L~~L~i~~C~ 185 (236)
.+++|++|.++++. +.. ++... ..+|+|+.|++.+|+
T Consensus 272 ~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 272 ENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 37889999998764 333 43322 347899999999884
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.14 E-value=2.6e-06 Score=77.65 Aligned_cols=152 Identities=11% Similarity=0.087 Sum_probs=72.9
Q ss_pred cCCcceeEEeeehHHHHHHhcCCcccccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCcc
Q 046682 8 KHLNVLSWSFGSSLAVQKFLKYPKLVSITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQS 87 (236)
Q Consensus 8 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~ 87 (236)
.+|+.|+++..... .+. ...++|+.|+++++.-..+ +.+.. +|+.|++++|.+..++.
T Consensus 80 ~~L~~L~Ls~N~l~---~ip---~~l~~L~~L~Ls~N~l~~i--p~l~~--~L~~L~Ls~N~l~~lp~------------ 137 (571)
T 3cvr_A 80 PQITVLEITQNALI---SLP---ELPASLEYLDACDNRLSTL--PELPA--SLKHLDVDNNQLTMLPE------------ 137 (571)
T ss_dssp TTCSEEECCSSCCS---CCC---CCCTTCCEEECCSSCCSCC--CCCCT--TCCEEECCSSCCSCCCC------------
T ss_pred CCCCEEECcCCCCc---ccc---cccCCCCEEEccCCCCCCc--chhhc--CCCEEECCCCcCCCCCC------------
Confidence 56777776643322 222 3346888888887743333 22332 77888877774443311
Q ss_pred CCCCccEEEEecCCCCCcchhhhcccCccEEeEecccccceecccccccccccccccccc----ccCcc-------cEEe
Q 046682 88 GFRSLDRVVISSCKKMKDLTWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHN----FFAQL-------ESLT 156 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~----~~p~L-------~~L~ 156 (236)
.+++|+.|+++++ .++.++. .+++|++|+++++. ++.+................+. ..++| +.|+
T Consensus 138 ~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 138 LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFR 213 (571)
T ss_dssp CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEE
T ss_pred cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEe
Confidence 2445555555444 3444332 34445555554442 2221110000000000000000 01145 7888
Q ss_pred ccccccccccCCCCCCCCCccEEeEeCCCC
Q 046682 157 IKWGRNLKSVYPNPLPLPKLKKIQVRGCPQ 186 (236)
Q Consensus 157 l~~~~~L~~i~~~~~~~p~L~~L~i~~C~~ 186 (236)
++++ .++.++.....+++|+.|++.+++-
T Consensus 214 Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 214 CREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred cCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 8764 5666666555688888888888754
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.13 E-value=1.1e-06 Score=79.55 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=28.0
Q ss_pred cccCcccEEeccccccccc--cCCCCCCCCCccEEeEeCCCCCCC
Q 046682 147 NFFAQLESLTIKWGRNLKS--VYPNPLPLPKLKKIQVRGCPQLKK 189 (236)
Q Consensus 147 ~~~p~L~~L~l~~~~~L~~--i~~~~~~~p~L~~L~i~~C~~L~~ 189 (236)
..+++|++|+|++|+ +.. +......+|+|+.|.+++|. +..
T Consensus 485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 456888999998887 432 11112357889999999997 443
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.11 E-value=1.5e-05 Score=62.27 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=15.4
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCcc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINL 70 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~l 70 (236)
+.++.|++.+..-..+. ..+..+++|+.|+++++.+
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcC
Confidence 34455555444322221 2344444555555544433
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.10 E-value=3.1e-05 Score=66.26 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=82.8
Q ss_pred ccCCceeecCCccceeeecccccccccCcc-CCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccc
Q 046682 58 ENLQELDLEDINLEEMKIDSTEEVKKLFQS-GFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDK 134 (236)
Q Consensus 58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~-~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~ 134 (236)
++++.|+++++.+..+..+. .. .+++|+.|+++++ ++..++. +..+++|++|+++++. ++.+..
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~--------~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~--- 105 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEW--------TPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDE--- 105 (361)
T ss_dssp TTCSEEECCSSCCCEECTTS--------SSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECT---
T ss_pred CCCCEEECCCCCCCccChhh--------hhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCH---
Confidence 56899999999776663221 22 6899999999987 6777653 5689999999999863 655542
Q ss_pred cccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCC
Q 046682 135 LRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVN 193 (236)
Q Consensus 135 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~ 193 (236)
..+..+++|++|++++.. +..+.. ....+++|+.|.+.++ +++.+|..
T Consensus 106 ---------~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~ 154 (361)
T 2xot_A 106 ---------FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE 154 (361)
T ss_dssp ---------TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGG
T ss_pred ---------HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHH
Confidence 245678999999998754 555543 3456899999999987 67777754
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.09 E-value=3.7e-05 Score=61.14 Aligned_cols=124 Identities=11% Similarity=0.158 Sum_probs=85.0
Q ss_pred ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682 58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL 135 (236)
Q Consensus 58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~ 135 (236)
+.++.|+++++.+..+.... ....+++|+.|+++++ +++.++. +..+++|++|+++++. ++.+..
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~-------~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~---- 98 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATG-------IFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQH---- 98 (220)
T ss_dssp TTCSEEECCSSCCCEECCCC-------CGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCG----
T ss_pred CCCCEEEcCCCcCCccCchh-------hhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCH----
Confidence 46789999988666552211 1346899999999887 5777653 6789999999998863 444331
Q ss_pred ccccccccccccccCcccEEeccccccccccCC-CCCCCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP-NPLPLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
..+..+++|++|++++.. ++.+.. ....+++|+.|+++++ +++.++........+|+.+
T Consensus 99 --------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 99 --------KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp --------GGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEE
T ss_pred --------hHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEE
Confidence 245678999999998753 555543 3456899999999997 6777743322222455544
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.06 E-value=2.9e-05 Score=60.54 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=68.0
Q ss_pred ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682 58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL 135 (236)
Q Consensus 58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~ 135 (236)
++|+.|+++++.+..+. .....+++|+.|+++++ .+..+.. +..+++|++|+++++. ++.+..
T Consensus 31 ~~l~~L~L~~n~i~~ip---------~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~---- 95 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP---------KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPP---- 95 (193)
T ss_dssp TTCCEEECCSSCCCSCC---------GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCT----
T ss_pred CCCCEEECCCCcCchhH---------HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCH----
Confidence 57888888888555442 12345788888888876 5666643 5678888888887753 444331
Q ss_pred ccccccccccccccCcccEEeccccccccccCCC-CCCCCCccEEeEeCC
Q 046682 136 RDISEIIGSEHNFFAQLESLTIKWGRNLKSVYPN-PLPLPKLKKIQVRGC 184 (236)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~-~~~~p~L~~L~i~~C 184 (236)
..+..+++|++|++++. .++.++.+ ...+++|+.|.+.+-
T Consensus 96 --------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 96 --------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp --------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred --------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 24556788888888764 45666554 335777887777653
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.06 E-value=1.9e-07 Score=73.27 Aligned_cols=106 Identities=18% Similarity=0.265 Sum_probs=62.9
Q ss_pred chhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh-hhcccCccEEeEecccccceecc
Q 046682 53 HLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW-LVFVQILKQLRIVFCTEMEEIIS 131 (236)
Q Consensus 53 ~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-l~~lp~L~~L~i~~C~~L~~i~~ 131 (236)
.+..+++|+.|++++|.+..+. ....+++|+.|+++++ .+..++. ...+++|++|+++++ .+..+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~----------~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS----------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC----------CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-
T ss_pred HHhcCCCCCEEECCCCCCcccc----------ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-
Confidence 4567777888887777444431 2234677777877776 4555543 335577788877766 343321
Q ss_pred ccccccccccccccccccCcccEEeccccccccccCC--CCCCCCCccEEeEeCCC
Q 046682 132 VDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVYP--NPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~--~~~~~p~L~~L~i~~C~ 185 (236)
.+..+++|++|++++.. +..++. ....+++|+.|.+.+++
T Consensus 110 -------------~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 -------------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -------------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -------------ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 23456777777776542 333221 12356777777777764
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.05 E-value=3.7e-05 Score=59.78 Aligned_cols=34 Identities=6% Similarity=0.083 Sum_probs=15.3
Q ss_pred CCCCccEEEEecCCCCCcch--hhhcccCccEEeEec
Q 046682 88 GFRSLDRVVISSCKKMKDLT--WLVFVQILKQLRIVF 122 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~--~l~~lp~L~~L~i~~ 122 (236)
.+++|+.|+++++ .+..+. .+..+++|++|++++
T Consensus 52 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 52 RLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp GCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 3445555555444 343331 233445555555544
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.04 E-value=2.2e-05 Score=61.06 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=77.6
Q ss_pred cccceEEEEeccCCCCcccc-chhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--h
Q 046682 33 VSITQFVLVYHCKSAPFNLL-HLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--L 109 (236)
Q Consensus 33 ~~~L~~L~l~~c~~~~~~~~-~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l 109 (236)
+..++.|.+.+..-..+... .+..+++|+.|+++++.+..+.. .....+++|+.|++++. +++.++. +
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 98 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP--------NAFEGASHIQELQLGEN-KIKEISNKMF 98 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT--------TTTTTCTTCCEEECCSC-CCCEECSSSS
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH--------hHcCCcccCCEEECCCC-cCCccCHHHh
Confidence 35899999998854444222 27889999999999996665522 23456899999999987 6777653 5
Q ss_pred hcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 110 VFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 110 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
..+++|++|+++++ .+..+.. ..+..+++|++|++++.+
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 99 LGLHQLKTLNLYDN-QISCVMP------------GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCTTCCEEECCSS-CCCEECT------------TSSTTCTTCCEEECTTCC
T ss_pred cCCCCCCEEECCCC-cCCeeCH------------HHhhcCCCCCEEEeCCCC
Confidence 67899999999876 4544432 245678899999997643
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.97 E-value=1.5e-05 Score=74.75 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=78.5
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcch-hhhcc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT-WLVFV 112 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~l~~l 112 (236)
..|+.|+|+++.-..+. ..+..+++|+.|++++|.+..++ .....+++|+.|+++++ +++.++ .+..+
T Consensus 224 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l 292 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTELP---------AEIKNLSNLRVLDLSHN-RLTSLPAELGSC 292 (727)
T ss_dssp CCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSCCC---------GGGGGGTTCCEEECTTS-CCSSCCSSGGGG
T ss_pred CCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcccC---------hhhhCCCCCCEEeCcCC-cCCccChhhcCC
Confidence 68999999988654442 34668999999999999665552 23457899999999988 577775 46789
Q ss_pred cCccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 113 QILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 113 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
++|++|+++++ .+..++ ..+..+++|+.|+|++.+
T Consensus 293 ~~L~~L~L~~N-~l~~lp-------------~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLP-------------WEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSS-CCCCCC-------------SSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCC-CCCccC-------------hhhhcCCCccEEeCCCCc
Confidence 99999999987 455543 246678899999998654
No 130
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=4.1e-06 Score=72.13 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=8.3
Q ss_pred hhcccCCceeecCC
Q 046682 55 AYMENLQELDLEDI 68 (236)
Q Consensus 55 ~~l~~L~~L~i~~c 68 (236)
..+++|++|.+++|
T Consensus 169 ~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 169 DAMPLLNNLKIKGT 182 (362)
T ss_dssp HTCTTCCEEEEECC
T ss_pred hcCCCCcEEEEeCC
Confidence 44566666666655
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.94 E-value=1.1e-06 Score=68.91 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=77.9
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ 113 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp 113 (236)
++|+.|++.++.-..+ +.+..+++|+.|++++|.+..+. .....+++|+.|+++++ ++..++.+..++
T Consensus 48 ~~L~~L~ls~n~l~~l--~~~~~l~~L~~L~l~~n~l~~l~---------~~~~~~~~L~~L~L~~N-~l~~l~~~~~l~ 115 (198)
T 1ds9_A 48 KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE---------NLDAVADTLEELWISYN-QIASLSGIEKLV 115 (198)
T ss_dssp TTCSEEECSEEEESCC--CCHHHHTTCCEEEEEEEEECSCS---------SHHHHHHHCSEEEEEEE-ECCCHHHHHHHH
T ss_pred CCCCEEECCCCCCccc--cccccCCCCCEEECCCCCccccc---------chhhcCCcCCEEECcCC-cCCcCCccccCC
Confidence 6899999998854444 47889999999999999555442 11234689999999998 788888788899
Q ss_pred CccEEeEecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 114 ILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 114 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
+|++|+++++. +..+... ..+..+++|++|++.+++
T Consensus 116 ~L~~L~l~~N~-i~~~~~~-----------~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEI-----------DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HSSEEEESEEE-CCCHHHH-----------HHHTTTTTCSEEEECSCH
T ss_pred CCCEEECCCCc-CCchhHH-----------HHHhcCCCCCEEEecCCc
Confidence 99999998863 3332210 134578999999998875
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=1.9e-05 Score=71.98 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=46.1
Q ss_pred cCCCCccEEEEecCCCCCcch-hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccc
Q 046682 87 SGFRSLDRVVISSCKKMKDLT-WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKS 165 (236)
Q Consensus 87 ~~l~~L~~L~i~~c~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 165 (236)
..+++|+.|+++++ .++.++ .+..+++|++|+++++ .++.+ +.+..+++|+.|++++. .++.
T Consensus 460 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~l--------------p~l~~l~~L~~L~Ls~N-~l~~ 522 (567)
T 1dce_A 460 EQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENV--------------DGVANLPRLQELLLCNN-RLQQ 522 (567)
T ss_dssp GGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC--------------GGGTTCSSCCEEECCSS-CCCS
T ss_pred cccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCC--------------cccCCCCCCcEEECCCC-CCCC
Confidence 44556666666555 455443 3445666666666554 23222 12345666666666653 3444
Q ss_pred c--CCCCCCCCCccEEeEeCCCCCCCcCC
Q 046682 166 V--YPNPLPLPKLKKIQVRGCPQLKKLPV 192 (236)
Q Consensus 166 i--~~~~~~~p~L~~L~i~~C~~L~~lp~ 192 (236)
+ +.....+++|+.|.++++ .+..+|.
T Consensus 523 ~~~p~~l~~l~~L~~L~L~~N-~l~~~~~ 550 (567)
T 1dce_A 523 SAAIQPLVSCPRLVLLNLQGN-SLCQEEG 550 (567)
T ss_dssp SSTTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred CCCcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence 4 333345666666666665 3444443
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.92 E-value=2.3e-06 Score=77.57 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=29.9
Q ss_pred cCcCCcceeEEeee-----hHHHHHHhcCCcccccceEEEEeccCCCCccc---c-chhhcccCCceeecCC
Q 046682 6 GLKHLNVLSWSFGS-----SLAVQKFLKYPKLVSITQFVLVYHCKSAPFNL---L-HLAYMENLQELDLEDI 68 (236)
Q Consensus 6 ~L~~L~~L~i~~~~-----~~~l~~l~~~~~l~~~L~~L~l~~c~~~~~~~---~-~l~~l~~L~~L~i~~c 68 (236)
++++|++|++..+. ...+..+... .++|+.|++.++.-..+.. . .+.++++|+.|.+.+|
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~---~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQH---NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHH---CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhc---CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 56777777765332 1113333222 2467777776553221110 1 1245667777777665
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.80 E-value=3e-06 Score=74.40 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=48.1
Q ss_pred CCccEEEEecCCCCCcc------hhhhcccCccEEeEecccccceeccccccccccccccccc-cccCcccEEecccccc
Q 046682 90 RSLDRVVISSCKKMKDL------TWLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEH-NFFAQLESLTIKWGRN 162 (236)
Q Consensus 90 ~~L~~L~i~~c~~l~~l------~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~ 162 (236)
++|+.|++++|. +... ..+..+++|++|+++++ .+...... . .. ..+ ...++|++|+++++.
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~----~---l~-~~l~~~~~~L~~L~L~~n~- 381 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVR----E---LC-QGLGQPGSVLRVLWLADCD- 381 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHH----H---HH-HHHTSTTCCCCEEECTTSC-
T ss_pred ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHH----H---HH-HHHcCCCCceEEEECCCCC-
Confidence 577777777773 5442 12345677777777766 33321100 0 00 011 125789999998873
Q ss_pred cc-----ccCCCCCCCCCccEEeEeCCC
Q 046682 163 LK-----SVYPNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 163 L~-----~i~~~~~~~p~L~~L~i~~C~ 185 (236)
+. .++.....+++|++|++++|+
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 33 233223347889999998883
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.72 E-value=4.8e-06 Score=73.08 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=24.3
Q ss_pred ccCcccEEeccccccccc-----cCCC-CCCCCCccEEeEeCCCCCCC
Q 046682 148 FFAQLESLTIKWGRNLKS-----VYPN-PLPLPKLKKIQVRGCPQLKK 189 (236)
Q Consensus 148 ~~p~L~~L~l~~~~~L~~-----i~~~-~~~~p~L~~L~i~~C~~L~~ 189 (236)
.+++|++|+++++. +.. +... ...+++|++|++++| ++..
T Consensus 225 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~ 270 (461)
T 1z7x_W 225 SKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITA 270 (461)
T ss_dssp HCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred hCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCH
Confidence 45777777777663 222 1111 124678888888888 5555
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.71 E-value=0.0002 Score=54.81 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=38.6
Q ss_pred CCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC
Q 046682 90 RSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY 167 (236)
Q Consensus 90 ~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~ 167 (236)
++|+.|++++. .+..++. +..+++|++|++++. +++.+.. ..+..+++|++|++++. +++.++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~------------~~~~~l~~L~~L~L~~N-~l~~l~ 97 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT------------GVFDKLTQLTQLDLNDN-HLKSIP 97 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccCh------------hHhCCcchhhEEECCCC-ccceeC
Confidence 45555555554 3444421 345555666665544 3333321 12234556666666542 344444
Q ss_pred CC-CCCCCCccEEeEeCC
Q 046682 168 PN-PLPLPKLKKIQVRGC 184 (236)
Q Consensus 168 ~~-~~~~p~L~~L~i~~C 184 (236)
.. ...+++|+.|.+.+.
T Consensus 98 ~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTTCTTCSEEECCSS
T ss_pred HHHhccccCCCEEEeCCC
Confidence 33 234556666666554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.70 E-value=0.00021 Score=54.42 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred CCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccccC
Q 046682 90 RSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKSVY 167 (236)
Q Consensus 90 ~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~ 167 (236)
++|+.|++++. +++.+.. +..+++|++|++++. .++.+.. ..+..+++|++|++++. +++.++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~f~~l~~L~~L~L~~N-~l~~~~ 94 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPA------------GVFDKLTQLTQLSLNDN-QLKSIP 94 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccCh------------hhccCCCCCCEEECCCC-ccCEeC
Confidence 44555555444 3444321 334555555555543 2332221 12234555555555443 344444
Q ss_pred CC-CCCCCCccEEeEeC
Q 046682 168 PN-PLPLPKLKKIQVRG 183 (236)
Q Consensus 168 ~~-~~~~p~L~~L~i~~ 183 (236)
.. ...+++|+.|.+.+
T Consensus 95 ~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 95 RGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp TTTTTTCTTCCEEECCS
T ss_pred HHHhcCCCCCCEEEeCC
Confidence 32 22345555555554
No 138
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.65 E-value=0.00012 Score=62.94 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=69.6
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCC-------CCCcc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCK-------KMKDL 106 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~-------~l~~l 106 (236)
++|+.|+|.++.+..+ +.+. +++|++|.+..|.+..-.+.. .....+|+|++|+++.+. .+..+
T Consensus 172 P~L~~L~L~g~~~l~l--~~~~-~~~L~~L~L~~~~l~~~~l~~------l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSI--GKKP-RPNLKSLEIISGGLPDSVVED------ILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp TTCCEEEEECCBTCBC--CSCB-CTTCSEEEEECSBCCHHHHHH------HHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred CCCcEEEEeCCCCcee--cccc-CCCCcEEEEecCCCChHHHHH------HHHccCCCCcEEEEeccccccccchhHHHH
Confidence 5788888877744332 2232 678888888766332110000 011247788888875321 12222
Q ss_pred hh---hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccccc-----cCCCCCCCCCccE
Q 046682 107 TW---LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNLKS-----VYPNPLPLPKLKK 178 (236)
Q Consensus 107 ~~---l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~-----i~~~~~~~p~L~~ 178 (236)
.. ...+|+|++|.+.+|.--..... . . .....+|+|++|+|+. ..+.. +..+...+++|+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-----~---l--a~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVE-----M---F--LESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHH-----H---H--HHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSE
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHH-----H---H--HhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceE
Confidence 21 12467888888877643211100 0 0 1123578888888864 33443 2222234678888
Q ss_pred EeEeCC
Q 046682 179 IQVRGC 184 (236)
Q Consensus 179 L~i~~C 184 (236)
|++++|
T Consensus 312 L~L~~n 317 (362)
T 2ra8_A 312 INMKYN 317 (362)
T ss_dssp EECCSB
T ss_pred EECCCC
Confidence 888877
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.55 E-value=0.00019 Score=54.87 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=40.4
Q ss_pred ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceecccccc
Q 046682 58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKL 135 (236)
Q Consensus 58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~ 135 (236)
++|+.|+++++.+..+.. .....+++|+.|++++. +++.++. +..+++|++|++++. .++.+..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~---- 98 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP--------GVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPR---- 98 (174)
T ss_dssp TTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT----
T ss_pred CCCcEEEeCCCCccccCH--------HHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCH----
Confidence 556666666664443311 12234566666666655 4555543 245666666666553 3333321
Q ss_pred ccccccccccccccCcccEEeccc
Q 046682 136 RDISEIIGSEHNFFAQLESLTIKW 159 (236)
Q Consensus 136 ~~~~~~~~~~~~~~p~L~~L~l~~ 159 (236)
..+..+++|++|++.+
T Consensus 99 --------~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 99 --------GAFDNLKSLTHIYLYN 114 (174)
T ss_dssp --------TTTTTCTTCSEEECCS
T ss_pred --------HHhccccCCCEEEeCC
Confidence 1234556666666654
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=0.0011 Score=55.61 Aligned_cols=36 Identities=3% Similarity=0.005 Sum_probs=18.3
Q ss_pred CcCCcceeEEee-ehHHHHHHhcCCcccccceEEEEeccC
Q 046682 7 LKHLNVLSWSFG-SSLAVQKFLKYPKLVSITQFVLVYHCK 45 (236)
Q Consensus 7 L~~L~~L~i~~~-~~~~l~~l~~~~~l~~~L~~L~l~~c~ 45 (236)
+.+++.|.++.. ....+..+... .++|+.|+|++..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~---l~~L~~LdLs~n~ 60 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDE---FPSLKVLDISNAE 60 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHS---CTTCCEEEEEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHh---hccCeEEecCcce
Confidence 345566666532 22334444332 3567777777653
No 141
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.51 E-value=1.3e-05 Score=68.61 Aligned_cols=35 Identities=14% Similarity=-0.002 Sum_probs=19.2
Q ss_pred CcccEEeccccccccccC-----CCCCCCCCccEEeEeCCC
Q 046682 150 AQLESLTIKWGRNLKSVY-----PNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 150 p~L~~L~l~~~~~L~~i~-----~~~~~~p~L~~L~i~~C~ 185 (236)
++|++|+++++. +.... .....+++|+.|.+++|.
T Consensus 225 ~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 225 NHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 367777776542 22211 112346777777777774
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.43 E-value=0.00032 Score=53.37 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=14.7
Q ss_pred CCCccEEEEecCCCCCcchh--hhcccCccEEeEec
Q 046682 89 FRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVF 122 (236)
Q Consensus 89 l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~ 122 (236)
+++|+.|++++. ++..++. +..+++|++|++++
T Consensus 53 l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 53 LTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 444555555443 3444332 23444555555544
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.0023 Score=53.65 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=17.7
Q ss_pred ccceEEEEeccCCCCccccchhhcccCCceeecCCc
Q 046682 34 SITQFVLVYHCKSAPFNLLHLAYMENLQELDLEDIN 69 (236)
Q Consensus 34 ~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~i~~c~ 69 (236)
.+|+.+.|.+ .-..+.-..+..+++|+.|.+.++.
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC
Confidence 3455555544 1122222335667777777776553
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.27 E-value=0.0008 Score=56.75 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=59.9
Q ss_pred cchhhcccCCceeecC-CccceeeecccccccccCccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccce
Q 046682 52 LHLAYMENLQELDLED-INLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEE 128 (236)
Q Consensus 52 ~~l~~l~~L~~L~i~~-c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~ 128 (236)
+.+..+++|+.|++++ +.+..+..+ ....+++|+.|++++. ++..++. +..+++|+.|+|++. ++..
T Consensus 25 p~l~~~~~L~~L~l~~~n~l~~~~~~--------~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~ 94 (347)
T 2ifg_A 25 HHLPGAENLTELYIENQQHLQHLELR--------DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALES 94 (347)
T ss_dssp TTSCSCSCCSEEECCSCSSCCEECGG--------GSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSC
T ss_pred CCCCCCCCeeEEEccCCCCCCCcChh--------HhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccce
Confidence 3377788899999997 477766321 2356899999999887 6877653 568999999999874 4554
Q ss_pred eccccccccccccccccccccCcccEEecccc
Q 046682 129 IISVDKLRDISEIIGSEHNFFAQLESLTIKWG 160 (236)
Q Consensus 129 i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 160 (236)
++.. .+..++ |+.|.+.+.
T Consensus 95 ~~~~------------~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 95 LSWK------------TVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCST------------TTCSCC-CCEEECCSS
T ss_pred eCHH------------HcccCC-ceEEEeeCC
Confidence 4321 122333 889988753
No 145
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.15 E-value=0.0001 Score=62.85 Aligned_cols=139 Identities=11% Similarity=-0.004 Sum_probs=68.2
Q ss_pred cceEEEEeccCCCCccccchhhc-----ccCCceeecCCccceeeecccccccccCccCC-CCccEEEEecCCCCCcchh
Q 046682 35 ITQFVLVYHCKSAPFNLLHLAYM-----ENLQELDLEDINLEEMKIDSTEEVKKLFQSGF-RSLDRVVISSCKKMKDLTW 108 (236)
Q Consensus 35 ~L~~L~l~~c~~~~~~~~~l~~l-----~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l-~~L~~L~i~~c~~l~~l~~ 108 (236)
+|+.|++++|.-.......+..+ ++|++|++++|.+......... .....+ ++|+.|++++| .+.....
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N-~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV----KTLAAIPFTITVLDLGWN-DFSSKSS 126 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----HHHHTSCTTCCEEECCSS-CGGGSCH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH----HHHHhCCCCccEEECcCC-cCCcHHH
Confidence 67777777663222111223332 6677777776643322111000 001223 57777777776 3554321
Q ss_pred ------hhc-ccCccEEeEecccccceeccccccccccccccccccccC-cccEEeccccccccccCC-----CCCCC-C
Q 046682 109 ------LVF-VQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFA-QLESLTIKWGRNLKSVYP-----NPLPL-P 174 (236)
Q Consensus 109 ------l~~-lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~L~~i~~-----~~~~~-p 174 (236)
+.. .++|++|++++|. +..... ... . ..+..++ +|++|+++++. +..... ....+ +
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~----~~l---~-~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~ 196 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGND-LGIKSS----DEL---I-QILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPA 196 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSC-GGGSCH----HHH---H-HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCT
T ss_pred HHHHHHHHhCCCceeEEEccCCc-CCHHHH----HHH---H-HHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCC
Confidence 112 2477777777652 221100 000 0 1223344 89999998863 333221 11234 4
Q ss_pred CccEEeEeCCCCCCC
Q 046682 175 KLKKIQVRGCPQLKK 189 (236)
Q Consensus 175 ~L~~L~i~~C~~L~~ 189 (236)
+|+.|++++|. +..
T Consensus 197 ~L~~L~Ls~N~-i~~ 210 (362)
T 3goz_A 197 SVTSLDLSANL-LGL 210 (362)
T ss_dssp TCCEEECTTSC-GGG
T ss_pred CCCEEECCCCC-CCh
Confidence 89999999884 444
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.10 E-value=0.0022 Score=54.03 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=59.3
Q ss_pred ccCCCCccEEEEecCCCCCcchh--hhcccCccEEeEecccccceeccccccccccccccccccccCcccEEeccccccc
Q 046682 86 QSGFRSLDRVVISSCKKMKDLTW--LVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRNL 163 (236)
Q Consensus 86 ~~~l~~L~~L~i~~c~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 163 (236)
...+++|+.|++++...+..++. +..+++|+.|++++. ++..++. ..+..+++|++|+|++ .+|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~------------~~~~~l~~L~~L~l~~-N~l 92 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP------------DAFHFTPRLSRLNLSF-NAL 92 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT------------TGGGSCSCCCEEECCS-SCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH------------HHhcCCcCCCEEeCCC-Ccc
Confidence 45677889998887667877653 567888999998876 5666542 2445788899998876 356
Q ss_pred cccCCCCCCCCCccEEeEeCC
Q 046682 164 KSVYPNPLPLPKLKKIQVRGC 184 (236)
Q Consensus 164 ~~i~~~~~~~p~L~~L~i~~C 184 (236)
..++...+...+|+.|.+.+.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSS
T ss_pred ceeCHHHcccCCceEEEeeCC
Confidence 666655444334888877764
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.26 E-value=0.00025 Score=61.04 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=48.4
Q ss_pred CCCccEEEEecCCCCCcch------hhhcccCccEEeEecccccceeccccccccccccccccccccCcccEEecccccc
Q 046682 89 FRSLDRVVISSCKKMKDLT------WLVFVQILKQLRIVFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGRN 162 (236)
Q Consensus 89 l~~L~~L~i~~c~~l~~l~------~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 162 (236)
.++|+.|++++| .+.+.. .+...++|++|++++|. +..... ... . ..+...++|++|+++++.
T Consensus 154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~----~~L---~-~~L~~~~~L~~L~Ls~N~- 222 (372)
T 3un9_A 154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL----ELL---A-AQLDRNRQLQELNVAYNG- 222 (372)
T ss_dssp TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH----HHH---H-HHGGGCSCCCEEECCSSC-
T ss_pred CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH----HHH---H-HHHhcCCCcCeEECCCCC-
Confidence 456788888777 454421 12456778888877764 322100 000 0 133456789999998763
Q ss_pred ccccC-----CCCCCCCCccEEeEeCCC
Q 046682 163 LKSVY-----PNPLPLPKLKKIQVRGCP 185 (236)
Q Consensus 163 L~~i~-----~~~~~~p~L~~L~i~~C~ 185 (236)
+.... ......++|+.|++.+++
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 22211 111235889999999884
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.15 E-value=0.00028 Score=60.79 Aligned_cols=11 Identities=18% Similarity=0.130 Sum_probs=5.5
Q ss_pred cCccEEeEecc
Q 046682 113 QILKQLRIVFC 123 (236)
Q Consensus 113 p~L~~L~i~~C 123 (236)
++|++|++++|
T Consensus 155 ~~L~~L~Ls~n 165 (372)
T 3un9_A 155 CQITTLRLSNN 165 (372)
T ss_dssp CCCCEEECCSS
T ss_pred CccceeeCCCC
Confidence 44555555544
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.67 E-value=0.012 Score=48.25 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=18.2
Q ss_pred CCCCccEEEEecCCCCCcchh----hhcccCccEEeEec
Q 046682 88 GFRSLDRVVISSCKKMKDLTW----LVFVQILKQLRIVF 122 (236)
Q Consensus 88 ~l~~L~~L~i~~c~~l~~l~~----l~~lp~L~~L~i~~ 122 (236)
.+++|+.|++++. ++..+.. +..+|+|+.|++++
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence 3556666666554 4544432 23566666666654
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=93.61 E-value=0.59 Score=40.22 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=18.8
Q ss_pred ccccCcccEEeccccc----cccccCCCC-CCCCCccEEeEe
Q 046682 146 HNFFAQLESLTIKWGR----NLKSVYPNP-LPLPKLKKIQVR 182 (236)
Q Consensus 146 ~~~~p~L~~L~l~~~~----~L~~i~~~~-~~~p~L~~L~i~ 182 (236)
....++|+.+.+.+.. ..+.+.... ..+++|+.+.+.
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 3445666666664311 122344332 246677777765
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.66 E-value=0.029 Score=42.99 Aligned_cols=114 Identities=10% Similarity=-0.051 Sum_probs=62.2
Q ss_pred ccceEEEEecc-CCCCc----cccchhhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcc--
Q 046682 34 SITQFVLVYHC-KSAPF----NLLHLAYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDL-- 106 (236)
Q Consensus 34 ~~L~~L~l~~c-~~~~~----~~~~l~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l-- 106 (236)
+.|+.|++.+| .-... ....+...++|++|++++|.+.+-..... .......++|++|+++++ .+.+-
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l----~~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL----AEMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH----HHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH----HHHHHhCCCcCEEECcCC-cCCHHHH
Confidence 58899999888 32110 01224556889999998884322100000 011123467899999887 56552
Q ss_pred ----hhhhcccCccEEeE--ecccccceeccccccccccccccccccccCcccEEeccccc
Q 046682 107 ----TWLVFVQILKQLRI--VFCTEMEEIISVDKLRDISEIIGSEHNFFAQLESLTIKWGR 161 (236)
Q Consensus 107 ----~~l~~lp~L~~L~i--~~C~~L~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 161 (236)
..+...++|++|++ +++ .+..-. ..... ..+...++|++|+++++.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g----~~~l~----~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNV----EMEIA----NMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHH----HHHHH----HHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHH----HHHHH----HHHHhCCCcCEEeccCCC
Confidence 12445678999999 433 232110 00000 233455788888887653
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=91.43 E-value=0.025 Score=43.28 Aligned_cols=116 Identities=15% Similarity=0.065 Sum_probs=66.8
Q ss_pred hhhcccCCceeecCC-ccceeeecccccccccCccCCCCccEEEEecCCCCCcch------hhhcccCccEEeEeccccc
Q 046682 54 LAYMENLQELDLEDI-NLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLT------WLVFVQILKQLRIVFCTEM 126 (236)
Q Consensus 54 l~~l~~L~~L~i~~c-~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~------~l~~lp~L~~L~i~~C~~L 126 (236)
+...++|++|++++| .+..-.+... .......++|++|++++| .+.+-. .+...++|++|++++|. +
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l----~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i 105 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKAC----AEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-I 105 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHH----HHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHH----HHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence 456789999999988 7653211000 012234578999999988 465421 23456889999998873 2
Q ss_pred ceeccccccccccccccccccccCcccEEec--cccccccc-----cCCCCCCCCCccEEeEeCC
Q 046682 127 EEIISVDKLRDISEIIGSEHNFFAQLESLTI--KWGRNLKS-----VYPNPLPLPKLKKIQVRGC 184 (236)
Q Consensus 127 ~~i~~~~~~~~~~~~~~~~~~~~p~L~~L~l--~~~~~L~~-----i~~~~~~~p~L~~L~i~~C 184 (236)
..- ...... ..+...++|++|++ .+.. +.. +.......++|++|++.+|
T Consensus 106 ~~~----g~~~l~----~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 SGS----GILALV----EALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CHH----HHHHHH----HGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CHH----HHHHHH----HHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 211 000000 23445678999999 4332 221 1111123477888888776
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=89.37 E-value=3.2 Score=35.58 Aligned_cols=31 Identities=10% Similarity=0.341 Sum_probs=14.0
Q ss_pred cccEEeccccccccccCCCCC-CCCCccEEeEeC
Q 046682 151 QLESLTIKWGRNLKSVYPNPL-PLPKLKKIQVRG 183 (236)
Q Consensus 151 ~L~~L~l~~~~~L~~i~~~~~-~~p~L~~L~i~~ 183 (236)
+|+.+.+. .+++.|....+ .+++|+.+.+.+
T Consensus 249 ~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 249 GITTVKLP--NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CCSEEEEE--TTCCEECTTTTTTCTTCCEEEEES
T ss_pred CccEEEeC--CCccEEChhHhhCCCCCCEEEeCC
Confidence 44444442 22444443322 345566655544
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=88.99 E-value=0.5 Score=38.48 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=55.8
Q ss_pred hhcccCCceeecCCccceeeecccccccccCccCCCCccEEEEecCCCCCcchhhhccc--CccEEeEecccccceeccc
Q 046682 55 AYMENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSCKKMKDLTWLVFVQ--ILKQLRIVFCTEMEEIISV 132 (236)
Q Consensus 55 ~~l~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~l~~lp--~L~~L~i~~C~~L~~i~~~ 132 (236)
.++++|+.|.++++.+..+.. . +.....+++|+.|++++- ++.++..+..+. +|++|.+.+.+--..+...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~--l----~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD--M----SSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG--G----TTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCCcc--c----hhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcc
Confidence 467899999999885554310 0 011235899999999775 677665455455 8999999876522211100
Q ss_pred cccccccccccccccccCcccEEeccc
Q 046682 133 DKLRDISEIIGSEHNFFAQLESLTIKW 159 (236)
Q Consensus 133 ~~~~~~~~~~~~~~~~~p~L~~L~l~~ 159 (236)
..... ..+..||+|+.|+=..
T Consensus 240 -~~y~~-----~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 240 -STYIS-----AIRERFPKLLRLDGHE 260 (267)
T ss_dssp -HHHHH-----HHHHHCTTCCEESSCB
T ss_pred -hhHHH-----HHHHHCcccCeECCcC
Confidence 00000 2356889999887644
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=79.85 E-value=8.9 Score=32.28 Aligned_cols=8 Identities=25% Similarity=0.218 Sum_probs=4.3
Q ss_pred CCccEEEE
Q 046682 90 RSLDRVVI 97 (236)
Q Consensus 90 ~~L~~L~i 97 (236)
.+|+.+.+
T Consensus 265 ~~L~~i~l 272 (394)
T 4gt6_A 265 AYLASVKM 272 (394)
T ss_dssp SSCCEEEC
T ss_pred ccccEEec
Confidence 45555555
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=79.01 E-value=27 Score=29.18 Aligned_cols=8 Identities=13% Similarity=-0.234 Sum_probs=4.1
Q ss_pred CcceEEec
Q 046682 199 ERRVVIEG 206 (236)
Q Consensus 199 ~~l~~~~~ 206 (236)
.+|+.|.-
T Consensus 366 ~~L~~i~l 373 (394)
T 4fs7_A 366 INLKKVEL 373 (394)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 45655543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=57.71 E-value=54 Score=27.29 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=30.2
Q ss_pred ccccCcccEEeccccccccccCCCCC-CCCCccEEeEeCCCCCCCcCCCCCCCCCcceEE
Q 046682 146 HNFFAQLESLTIKWGRNLKSVYPNPL-PLPKLKKIQVRGCPQLKKLPVNSSSVKERRVVI 204 (236)
Q Consensus 146 ~~~~p~L~~L~l~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~ 204 (236)
.....+|+.+.|.+ +++.|....+ .+.+|+.+.+-. +++.+..+--....+|+.|
T Consensus 307 F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 307 FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEE
T ss_pred ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEE
Confidence 33456777777742 4666665544 457777777742 3555544322223455554
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=53.99 E-value=10 Score=26.76 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=24.1
Q ss_pred ccCCceeecCCccceeeecccccccccCccCCCCccEEEEecC
Q 046682 58 ENLQELDLEDINLEEMKIDSTEEVKKLFQSGFRSLDRVVISSC 100 (236)
Q Consensus 58 ~~L~~L~i~~c~le~l~~~~~~~~~~~~~~~l~~L~~L~i~~c 100 (236)
++|+.|+++++.+..|..+. ...+++|+.|+|.+-
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~--------f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGL--------LDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTT--------GGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCccChhh--------hhhccccCEEEecCC
Confidence 47889999888776663221 234778888888754
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=48.29 E-value=80 Score=25.89 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=9.0
Q ss_pred ccCcccEEeccccccccccCC
Q 046682 148 FFAQLESLTIKWGRNLKSVYP 168 (236)
Q Consensus 148 ~~p~L~~L~l~~~~~L~~i~~ 168 (236)
...+|+.+.|. .+++.|..
T Consensus 308 ~c~~L~~i~lp--~~l~~I~~ 326 (379)
T 4h09_A 308 DCVKLSSVTLP--TALKTIQV 326 (379)
T ss_dssp TCTTCCEEECC--TTCCEECT
T ss_pred CCCCCCEEEcC--ccccEEHH
Confidence 34556665553 13444443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=43.70 E-value=63 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=15.8
Q ss_pred ccCcccEEeccccccccccCCCCC-CCCCccEEeEe
Q 046682 148 FFAQLESLTIKWGRNLKSVYPNPL-PLPKLKKIQVR 182 (236)
Q Consensus 148 ~~p~L~~L~l~~~~~L~~i~~~~~-~~p~L~~L~i~ 182 (236)
...+|+.+.+.. +++.|....+ .+++|+.+.+.
T Consensus 341 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 341 GCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 345555555532 2455544332 34555555553
Done!