BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046683
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 149/303 (49%), Gaps = 30/303 (9%)
Query: 30 ISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGK 89
+SL +G + DF L LDLS N +G +PP G+ S L+ L+L +N FSG+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 90 IPCEIFL-LTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNL-KSL 147
+P + L + LK L L N+ SG +P + NL SL
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEF-----------------------SGELPESLTNLSASL 370
Query: 148 SELDLSINQLSGSIPPSMGN--LSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQL 205
LDLS N SG I P++ + L L+L +N G IPP + N L+ L L N L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 206 SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNIC 265
SG IP S G+L+ L L L N L G IP+E+ +++L L LD N TG +P L N
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 266 RGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSR 325
L + +S N G IPK + +L +++ N+ +GNI LG +L ++DL+
Sbjct: 491 N---LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 326 NNF 328
N F
Sbjct: 548 NLF 550
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 150/319 (47%), Gaps = 26/319 (8%)
Query: 23 DAGRVINISLTNTGLSGTLHDFS--FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLS 80
D + ++ ++ LSG DFS S L L++S N+ G IPP L LQ LS
Sbjct: 221 DCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 275
Query: 81 LHANAFSGKIP------CEIFLLTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXX- 133
L N F+G+IP C+ L L L N G++PP
Sbjct: 276 LAENKFTGEIPDFLSGACDT-----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 134 SGSIPPD-IGNLKSLSELDLSINQLSGSIPPSMGNLS-NLNRLFLYDNLLYGSIPPNVGN 191
SG +P D + ++ L LDLS N+ SG +P S+ NLS +L L L N G I PN+
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 192 --LKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALD 249
+L L L N +G IP + N + L+ L LSFN LSG+IP +G+L L L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 250 QNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNIS 309
N G +P L + L+ + N G IP L CT+L + + N LTG I
Sbjct: 451 LNMLEGEIPQELMYV---KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 310 QALGIYHNLTFIDLSRNNF 328
+ +G NL + LS N+F
Sbjct: 508 KWIGRLENLAILKLSNNSF 526
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 148/326 (45%), Gaps = 51/326 (15%)
Query: 32 LTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIP 91
L N G +G + + S L L LSFN L G IP +G+LSKL+ L L N G+IP
Sbjct: 401 LQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 92 CEIFLLTHLKFLILHSNKLNGSIPP-XXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSEL 150
E+ + L+ LIL N L G IP +G IP IG L++L+ L
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPP----------------------- 187
LS N SG+IP +G+ +L L L NL G+IP
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 188 ---------NVGNLKSLLVLQLDE-NQLS-------------GCIPRSFGNLTNLIQLFL 224
GNL ++ ++ N+LS G +F N +++ L +
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 225 SFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTI 284
S+N LSG IP+EIG++ L L L N +G +P +G++ RG L +S N G I
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RG--LNILDLSSNKLDGRI 696
Query: 285 PKSLKYCTSLFRVRVDGNNLTGNISQ 310
P+++ T L + + NNL+G I +
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 149/350 (42%), Gaps = 54/350 (15%)
Query: 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSK--LQLLSLHA 83
+V+++S SG L + +L L LDLS N G I P + K LQ L L
Sbjct: 346 KVLDLSFNE--FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 84 NAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPXX-XXXXXXXXXXXXXXXSGSIPPDIG 142
N F+GKIP + + L L L N L+G+IP G IP ++
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 143 NLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202
+K+L L L N L+G IP + N +NLN + L +N L G IP +G L++L +L+L
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI------------------------- 237
N SG IP G+ +LI L L+ N +G+IP +
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 238 -------GNLRSLVQLALDQ--------------NQFTGFLPPSLGNICRGGALQYFGVS 276
GNL + +Q + G P+ N G++ + +S
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN---NGSMMFLDMS 640
Query: 277 ENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRN 326
N G IPK + LF + + N+++G+I +G L +DLS N
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 108/244 (44%), Gaps = 39/244 (15%)
Query: 30 ISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGK 89
ISL+N L+G + + +LA L LS N G IP ++G+ L L L+ N F+G
Sbjct: 495 ISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 90 IPCEIFLLTH------------------------------LKFLILHSNKLNGSIPPXXX 119
IP +F + L+F + S +LN
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-------R 606
Query: 120 XXXXXXXXXXXXXXSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDN 179
G P N S+ LD+S N LSG IP +G++ L L L N
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 180 LLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGN 239
+ GSIP VG+L+ L +L L N+L G IP++ LT L ++ LS NNLSG IP E+G
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQ 725
Query: 240 LRSL 243
+
Sbjct: 726 FETF 729
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 153/361 (42%), Gaps = 66/361 (18%)
Query: 6 NVSSKIRPCAWSGISCND--------AGRVINIS------------------LTNTGLSG 39
+ SS PC + G++C D + + +N+ L+N+ ++G
Sbjct: 32 DWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING 91
Query: 40 TLHDFSFSLFPHLAYLDLSFNELFGIIP--PQIGNLSKLQLLSLHANA--FSGKI----- 90
++ F S L LDLS N L G + +G+ S L+ L++ +N F GK+
Sbjct: 92 SVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149
Query: 91 --PCEIFLLT-------------------HLKFLILHSNKLNGSIPPXXXXXXXXXXXXX 129
E+ L+ LK L + NK++G +
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 209
Query: 130 XXXXSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV 189
+G P +G+ +L LD+S N+LSG ++ + L L + N G IPP
Sbjct: 210 NNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267
Query: 190 GNLKSLLVLQLDENQLSGCIPRSF-GNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLAL 248
LKSL L L EN+ +G IP G L L LS N+ G++P G+ L LAL
Sbjct: 268 --LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 249 DQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLK-YCTSLFRVRVDGNNLTGN 307
N F+G LP + + + L+ +S N F G +P+SL SL + + NN +G
Sbjct: 326 SSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 308 I 308
I
Sbjct: 384 I 384
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 149/303 (49%), Gaps = 30/303 (9%)
Query: 30 ISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGK 89
+SL +G + DF L LDLS N +G +PP G+ S L+ L+L +N FSG+
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 90 IPCEIFL-LTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNL-KSL 147
+P + L + LK L L N+ SG +P + NL SL
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEF-----------------------SGELPESLTNLSASL 367
Query: 148 SELDLSINQLSGSIPPSMGN--LSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQL 205
LDLS N SG I P++ + L L+L +N G IPP + N L+ L L N L
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 206 SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNIC 265
SG IP S G+L+ L L L N L G IP+E+ +++L L LD N TG +P L N
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 266 RGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSR 325
L + +S N G IPK + +L +++ N+ +GNI LG +L ++DL+
Sbjct: 488 N---LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 326 NNF 328
N F
Sbjct: 545 NLF 547
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 150/319 (47%), Gaps = 26/319 (8%)
Query: 23 DAGRVINISLTNTGLSGTLHDFS--FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLS 80
D + ++ ++ LSG DFS S L L++S N+ G IPP L LQ LS
Sbjct: 218 DCSALQHLDISGNKLSG---DFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 272
Query: 81 LHANAFSGKIP------CEIFLLTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXX- 133
L N F+G+IP C+ L L L N G++PP
Sbjct: 273 LAENKFTGEIPDFLSGACDT-----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 134 SGSIPPD-IGNLKSLSELDLSINQLSGSIPPSMGNLS-NLNRLFLYDNLLYGSIPPNVGN 191
SG +P D + ++ L LDLS N+ SG +P S+ NLS +L L L N G I PN+
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 192 --LKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALD 249
+L L L N +G IP + N + L+ L LSFN LSG+IP +G+L L L L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 250 QNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNIS 309
N G +P L + L+ + N G IP L CT+L + + N LTG I
Sbjct: 448 LNMLEGEIPQELMYV---KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 310 QALGIYHNLTFIDLSRNNF 328
+ +G NL + LS N+F
Sbjct: 505 KWIGRLENLAILKLSNNSF 523
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 148/326 (45%), Gaps = 51/326 (15%)
Query: 32 LTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIP 91
L N G +G + + S L L LSFN L G IP +G+LSKL+ L L N G+IP
Sbjct: 398 LQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 92 CEIFLLTHLKFLILHSNKLNGSIPP-XXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSEL 150
E+ + L+ LIL N L G IP +G IP IG L++L+ L
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPP----------------------- 187
LS N SG+IP +G+ +L L L NL G+IP
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 188 ---------NVGNLKSLLVLQLDE-NQLS-------------GCIPRSFGNLTNLIQLFL 224
GNL ++ ++ N+LS G +F N +++ L +
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 225 SFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTI 284
S+N LSG IP+EIG++ L L L N +G +P +G++ RG L +S N G I
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RG--LNILDLSSNKLDGRI 693
Query: 285 PKSLKYCTSLFRVRVDGNNLTGNISQ 310
P+++ T L + + NNL+G I +
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 149/350 (42%), Gaps = 54/350 (15%)
Query: 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSK--LQLLSLHA 83
+V+++S SG L + +L L LDLS N G I P + K LQ L L
Sbjct: 343 KVLDLSFNE--FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 84 NAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPXX-XXXXXXXXXXXXXXXSGSIPPDIG 142
N F+GKIP + + L L L N L+G+IP G IP ++
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 143 NLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202
+K+L L L N L+G IP + N +NLN + L +N L G IP +G L++L +L+L
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI------------------------- 237
N SG IP G+ +LI L L+ N +G+IP +
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 238 -------GNLRSLVQLALDQ--------------NQFTGFLPPSLGNICRGGALQYFGVS 276
GNL + +Q + G P+ N G++ + +S
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN---NGSMMFLDMS 637
Query: 277 ENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRN 326
N G IPK + LF + + N+++G+I +G L +DLS N
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 108/244 (44%), Gaps = 39/244 (15%)
Query: 30 ISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGK 89
ISL+N L+G + + +LA L LS N G IP ++G+ L L L+ N F+G
Sbjct: 492 ISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 90 IPCEIFLLTH------------------------------LKFLILHSNKLNGSIPPXXX 119
IP +F + L+F + S +LN
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-------R 603
Query: 120 XXXXXXXXXXXXXXSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDN 179
G P N S+ LD+S N LSG IP +G++ L L L N
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 180 LLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGN 239
+ GSIP VG+L+ L +L L N+L G IP++ LT L ++ LS NNLSG IP E+G
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQ 722
Query: 240 LRSL 243
+
Sbjct: 723 FETF 726
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 153/361 (42%), Gaps = 66/361 (18%)
Query: 6 NVSSKIRPCAWSGISCND--------AGRVINIS------------------LTNTGLSG 39
+ SS PC + G++C D + + +N+ L+N+ ++G
Sbjct: 29 DWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING 88
Query: 40 TLHDFSFSLFPHLAYLDLSFNELFGIIP--PQIGNLSKLQLLSLHANA--FSGKI----- 90
++ F S L LDLS N L G + +G+ S L+ L++ +N F GK+
Sbjct: 89 SVSGFKCS--ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 146
Query: 91 --PCEIFLLT-------------------HLKFLILHSNKLNGSIPPXXXXXXXXXXXXX 129
E+ L+ LK L + NK++G +
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 206
Query: 130 XXXXSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV 189
+G P +G+ +L LD+S N+LSG ++ + L L + N G IPP
Sbjct: 207 NNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 264
Query: 190 GNLKSLLVLQLDENQLSGCIPRSF-GNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLAL 248
LKSL L L EN+ +G IP G L L LS N+ G++P G+ L LAL
Sbjct: 265 --LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 249 DQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLK-YCTSLFRVRVDGNNLTGN 307
N F+G LP + + + L+ +S N F G +P+SL SL + + NN +G
Sbjct: 323 SSNNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 308 I 308
I
Sbjct: 381 I 381
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 112/249 (44%), Gaps = 32/249 (12%)
Query: 66 IPPQIGNLSKLQLLSLHA-NAFSGKIPCEIFLLTHLKFL-ILHSNKLNGSIPPXXXXXXX 123
IP + NL L L + N G IP I LT L +L I H+N
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--------------- 112
Query: 124 XXXXXXXXXXSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG 183
SG+IP + +K+L LD S N LSG++PPS+ +L NL + N + G
Sbjct: 113 ---------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 184 SIPPNVGNLKSLLV-LQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRS 242
+IP + G+ L + + N+L+G IP +F NL NL + LS N L G G+ ++
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 243 LVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGN 302
++ L +N L LG + L + N GT+P+ L L + V N
Sbjct: 223 TQKIHLAKNS----LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 303 NLTGNISQA 311
NL G I Q
Sbjct: 279 NLCGEIPQG 287
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 7/195 (3%)
Query: 137 IPPDIGNLKSLSELDLS-INQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSL 195
IP + NL L+ L + IN L G IPP++ L+ L+ L++ + G+IP + +K+L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 196 LVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSL-VQLALDQNQFT 254
+ L N LSG +P S +L NL+ + N +SG+IP G+ L + + +N+ T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 255 GFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGI 314
G +PP+ N+ L + +S N +G + ++ + N+L ++ + +G+
Sbjct: 188 GKIPPTFANL----NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL 242
Query: 315 YHNLTFIDLSRNNFY 329
NL +DL N Y
Sbjct: 243 SKNLNGLDLRNNRIY 257
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 48/286 (16%)
Query: 15 AWSGISCN---DAGRVINISLTNTGLSGTLH-DFSFSLFPHLAYLDLS-FNELFGIIPPQ 69
W G+ C+ RV N+ L+ L S + P+L +L + N L G IPP
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 70 IGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXX 129
I L++L L + SG IP L+ +K L+ N
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIP---DFLSQIKTLVTLDFSYNA----------------- 136
Query: 130 XXXXSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNL-NRLFLYDNLLYGSIPPN 188
SG++PP I +L +L + N++SG+IP S G+ S L + + N L G IPP
Sbjct: 137 ---LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 189 VGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLAL 248
NL +L + L N L G FG+ N ++ L+ N+L+ + + +G ++L L L
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDL 251
Query: 249 DQNQFTGFLPPSL-----------------GNICRGGALQYFGVSE 277
N+ G LP L G I +GG LQ F VS
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 112/252 (44%), Gaps = 27/252 (10%)
Query: 38 SGTLHDFS-FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL 96
S T+ D S S L L S N++ + P + NL+ L+ L + +N S +
Sbjct: 138 SNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 97 LTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLS---ELDLS 153
LT+L+ LI +N+++ P +G+ DIG L SL+ +LDL+
Sbjct: 194 LTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
Query: 154 INQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSF 213
NQ+S P + L+ L L L N + +I P G L +L L+L+ENQL P
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG-LTALTNLELNENQLEDISP--I 301
Query: 214 GNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYF 273
NL NL L L FNN+S P + +L L +L N+ + SL N+ + +
Sbjct: 302 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTN---INWL 354
Query: 274 GVSENHFQGTIP 285
N P
Sbjct: 355 SAGHNQISDLTP 366
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKS 194
I P + NL +L+ L L NQ++ P + NL+NLNRL L N + S + L S
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTS 152
Query: 195 LLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSG-SIPREIGNLRSLVQLALDQNQF 253
L L NQ++ P NLT L +L +S N +S S+ ++ NL SL+ NQ
Sbjct: 153 LQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT---NNQI 207
Query: 254 TGFLP 258
+ P
Sbjct: 208 SDITP 212
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 125/285 (43%), Gaps = 48/285 (16%)
Query: 38 SGTLHDFS-FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL 96
S T+ D S S L L+ S N++ + P + NL+ L+ L + +N S +
Sbjct: 138 SNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 97 LTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLS---ELDLS 153
LT+L+ LI +N+++ P +G+ DIG L SL+ +LDL+
Sbjct: 194 LTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
Query: 154 INQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSF 213
NQ+S P + L+ L L L N + +I P G L +L L+L+ENQL P
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG-LTALTNLELNENQLEDISP--I 301
Query: 214 GNLTNLIQLFLSFNNLSGSIP--------------------REIGNLRSLVQLALDQNQF 253
NL NL L L FNN+S P + NL ++ L+ NQ
Sbjct: 302 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 361
Query: 254 TGFLPPSLGNICRGGAL----QYFGVSENHFQG--TIPKSLKYCT 292
+ P L N+ R L Q + + +++ +IP ++K T
Sbjct: 362 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKS 194
I P + NL +L+ L L NQ++ P + NL+NLNRL L N + S + L S
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTS 152
Query: 195 LLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSG-SIPREIGNLRSLVQLALDQNQF 253
L L NQ++ P NLT L +L +S N +S S+ ++ NL SL+ NQ
Sbjct: 153 LQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT---NNQI 207
Query: 254 TGFLP 258
+ P
Sbjct: 208 SDITP 212
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 124/285 (43%), Gaps = 48/285 (16%)
Query: 38 SGTLHDFS-FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL 96
S T+ D S S L L S N++ + P + NL+ L+ L + +N S +
Sbjct: 138 SNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 97 LTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLS---ELDLS 153
LT+L+ LI +N+++ P +G+ DIG L SL+ +LDL+
Sbjct: 194 LTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 247
Query: 154 INQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSF 213
NQ+S P + L+ L L L N + +I P G L +L L+L+ENQL P
Sbjct: 248 NNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG-LTALTNLELNENQLEDISP--I 301
Query: 214 GNLTNLIQLFLSFNNLSGSIP--------------------REIGNLRSLVQLALDQNQF 253
NL NL L L FNN+S P + NL ++ L+ NQ
Sbjct: 302 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 361
Query: 254 TGFLPPSLGNICRGGAL----QYFGVSENHFQG--TIPKSLKYCT 292
+ P L N+ R L Q + + +++ +IP ++K T
Sbjct: 362 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKS 194
I P + NL +L+ L L NQ++ P + NL+NLNRL L N + S + L S
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTS 152
Query: 195 LLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSG-SIPREIGNLRSLVQLALDQNQF 253
L L NQ++ P NLT L +L +S N +S S+ ++ NL SL+ NQ
Sbjct: 153 LQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT---NNQI 207
Query: 254 TGFLP 258
+ P
Sbjct: 208 SDITP 212
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 140 DIGNLKSLSELD---LSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSL 195
DI LK L+ L L+ NQL L+NL L L +N L S+P V L +L
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNL 135
Query: 196 LVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI-GNLRSLVQLALDQNQFT 254
L L NQL F LTNL +L LS+N L S+P + L L L L QNQ
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 255 GFLPPSLGNICRGGALQYFGVSENHFQGTIP 285
P G R +LQY + +N + T P
Sbjct: 195 SV--PD-GVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFLI 104
F +L LDLS+N+L + L++L+ L L+ N +P +F LT L+++
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIW 211
Query: 105 LHSNKLNGSIP 115
LH N + + P
Sbjct: 212 LHDNPWDCTCP 222
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 40 TLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLT 98
+L D F +L YL+L+ N+L + L+ L L L N +P +F LT
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT 181
Query: 99 HLKFLILHSNKLNGSIP 115
LK L L+ N+L S+P
Sbjct: 182 QLKDLRLYQNQLK-SVP 197
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 115/252 (45%), Gaps = 28/252 (11%)
Query: 38 SGTLHDFSFSLFPHLAYLDLSF-NELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL 96
S T+ D S +L + LSF N++ + P + NL+ L+ L + +N S +
Sbjct: 142 SNTISDIS-ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 196
Query: 97 LTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLS---ELDLS 153
LT+L+ LI +N+++ P +G+ DIG L SL+ +LDL+
Sbjct: 197 LTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 250
Query: 154 INQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSF 213
NQ+S P + L+ L L L N + +I P G L +L L+L+ENQL P S
Sbjct: 251 NNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG-LTALTNLELNENQLEDISPIS- 305
Query: 214 GNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYF 273
NL NL L L FNN+S P + +L L +L N+ + SL N+ + +
Sbjct: 306 -NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTN---INWL 357
Query: 274 GVSENHFQGTIP 285
N P
Sbjct: 358 SAGHNQISDLTP 369
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 37/214 (17%)
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLL------------- 181
I P + NL +L+ L L NQ++ P + NL+NLNRL L N +
Sbjct: 102 ADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQ 158
Query: 182 -------YGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIP 234
+ P + NL +L L + N++S LTNL L + N +S P
Sbjct: 159 QLSFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 215
Query: 235 REIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSL 294
+G L +L +L+L+ NQ +G + L ++ N P L T L
Sbjct: 216 --LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 266
Query: 295 FRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328
+++ G N NIS G+ LT ++L+ N
Sbjct: 267 TELKL-GANQISNISPLAGLTA-LTNLELNENQL 298
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDE 202
L +L L L N L + +L NL LFL+ N + S+P L SL L L +
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQ 185
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLG 262
N+++ P +F +L L+ L+L NNLS + LR+L L L+ N +
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC------- 238
Query: 263 NICRG----GALQYFGVSENHFQGTIPKSL 288
CR LQ F S + ++P+ L
Sbjct: 239 -DCRARPLWAWLQKFRGSSSEVPCSLPQRL 267
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 144 LKSLSELDLSIN-QLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202
L L +LDLS N QL P + L L+ L L L P L +L L L +
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLG 262
N L +F +L NL LFL N +S R L SL +L L QN+ P +
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 263 NICRGGALQYFG 274
++ R L F
Sbjct: 198 DLGRLMTLYLFA 209
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Query: 138 PPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLV 197
P L L L L L P L+ L L+L DN L +L +L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 198 LQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFL 257
L L N++S R+F L +L +L L N ++ P +L L+ L L N +
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 258 PPSLGNICRGGALQYFGVSEN 278
+L + ALQY +++N
Sbjct: 217 TEALAPL---RALQYLRLNDN 234
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 6/158 (3%)
Query: 172 NRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSG 231
R+FL+ N + + ++L +L L N L+ +F L L QL LS N
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 232 SI-PREIGNLRSLVQLALDQNQFTGFLPPSLGNICRG-GALQYFGVSENHFQGTIPKSLK 289
S+ P L L L LD+ P + RG ALQY + +N Q + +
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNALQALPDDTFR 149
Query: 290 YCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNN 327
+L + + GN ++ +A H+L + L +N
Sbjct: 150 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 187
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 127/285 (44%), Gaps = 49/285 (17%)
Query: 38 SGTLHDFSFSLFPHLAYLDLSF-NELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL 96
S T+ D S +L + LSF N++ + P + NL+ L+ L + +N S +
Sbjct: 143 SNTISDIS-ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 197
Query: 97 LTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLS---ELDLS 153
LT+L+ LI +N+++ P +G+ DIG L SL+ +LDL+
Sbjct: 198 LTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251
Query: 154 INQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSF 213
NQ+S P + L+ L L L N + +I P G L +L L+L+ENQL P S
Sbjct: 252 NNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAG-LTALTNLELNENQLEDISPIS- 306
Query: 214 GNLTNLIQLFLSFNNLSGSIP--------------------REIGNLRSLVQLALDQNQF 253
NL NL L L FNN+S P + NL ++ L+ NQ
Sbjct: 307 -NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365
Query: 254 TGFLPPSLGNICRGGAL----QYFGVSENHFQG--TIPKSLKYCT 292
+ P L N+ R L Q + + +++ +IP ++K T
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 408
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 37/214 (17%)
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLL------------- 181
I P + NL +L+ L L NQ++ P + NL+NLNRL L N +
Sbjct: 103 ADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQ 159
Query: 182 -------YGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIP 234
+ P + NL +L L + N++S LTNL L + N +S P
Sbjct: 160 QLSFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216
Query: 235 REIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSL 294
+G L +L +L+L+ NQ +G + L ++ N P L T L
Sbjct: 217 --LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267
Query: 295 FRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328
+++ G N NIS G+ LT ++L+ N
Sbjct: 268 TELKL-GANQISNISPLAGLTA-LTNLELNENQL 299
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDE 202
L +L L L N L + +L NL LFL+ N + S+P L SL L L +
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQ 186
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLG 262
N+++ P +F +L L+ L+L NNLS + LR+L L L+ N +
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC------- 239
Query: 263 NICRG----GALQYFGVSENHFQGTIPKSL 288
CR LQ F S + ++P+ L
Sbjct: 240 -DCRARPLWAWLQKFRGSSSEVPCSLPQRL 268
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 144 LKSLSELDLSIN-QLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202
L L +LDLS N QL P + L L+ L L L P L +L L L +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLG 262
N L +F +L NL LFL N +S R L SL +L L QN+ P +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 263 NICRGGALQYFG 274
++ R L F
Sbjct: 199 DLGRLMTLYLFA 210
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Query: 138 PPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLV 197
P L L L L L P L+ L L+L DN L +L +L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 198 LQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFL 257
L L N++S R+F L +L +L L N ++ P +L L+ L L N +
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 258 PPSLGNICRGGALQYFGVSEN 278
+L + ALQY +++N
Sbjct: 218 TEALAPL---RALQYLRLNDN 235
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 6/158 (3%)
Query: 172 NRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSG 231
R+FL+ N + + ++L +L L N L+ +F L L QL LS N
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 232 SI-PREIGNLRSLVQLALDQNQFTGFLPPSLGNICRG-GALQYFGVSENHFQGTIPKSLK 289
S+ P L L L LD+ P + RG ALQY + +N Q + +
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 290 YCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNN 327
+L + + GN ++ +A H+L + L +N
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 26/229 (11%)
Query: 60 NELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPXXX 119
N++ + P + NL+ L+ L + +N S + LT+L+ LI +N+++ P
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---- 211
Query: 120 XXXXXXXXXXXXXXSGSIPPDIGNLKSLS---ELDLSINQLSGSIPPSMGNLSNLNRLFL 176
+G+ DIG L SL+ +LDL+ NQ+S P + L+ L L L
Sbjct: 212 --LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 267
Query: 177 YDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPRE 236
N + +I P G L +L L+L+ENQL P NL NL L L FNN+S P
Sbjct: 268 GANQI-SNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 321
Query: 237 IGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIP 285
+ +L L +L N+ + SL N+ + + N P
Sbjct: 322 VSSLTKLQRLFFSNNKVSDV--SSLANLTN---INWLSAGHNQISDLTP 365
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 37/214 (17%)
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLL------------- 181
I P + NL +L+ L L NQ++ P + NL+NLNRL L N +
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 182 -------YGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIP 234
+ P + NL +L L + N++S LTNL L + N +S P
Sbjct: 155 QLNFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
Query: 235 REIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSL 294
+G L +L +L+L+ NQ +G + L ++ N P L T L
Sbjct: 212 --LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 295 FRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328
+++ G N NIS G+ LT ++L+ N
Sbjct: 263 TELKL-GANQISNISPLAGLTA-LTNLELNENQL 294
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 47/262 (17%)
Query: 60 NELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPXXX 119
N++ + P + NL+ L+ L + +N S + LT+L+ LI +N+++ P
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---- 211
Query: 120 XXXXXXXXXXXXXXSGSIPPDIGNLKSLS---ELDLSINQLSGSIPPSMGNLSNLNRLFL 176
+G+ DIG L SL+ +LDL+ NQ+S P + L+ L L L
Sbjct: 212 --LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 267
Query: 177 YDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIP-- 234
N + +I P G L +L L+L+ENQL P S NL NL L L FNN+S P
Sbjct: 268 GANQI-SNISPLAG-LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVS 323
Query: 235 ------------------REIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGAL----QY 272
+ NL ++ L+ NQ + P L N+ R L Q
Sbjct: 324 SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 381
Query: 273 FGVSENHFQG--TIPKSLKYCT 292
+ + +++ +IP ++K T
Sbjct: 382 WTNAPVNYKANVSIPNTVKNVT 403
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 37/214 (17%)
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLL------------- 181
I P + NL +L+ L L NQ++ P + NL+NLNRL L N +
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQ 154
Query: 182 -------YGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIP 234
+ P + NL +L L + N++S LTNL L + N +S P
Sbjct: 155 QLNFGNQVTDLKP-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 211
Query: 235 REIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSL 294
+G L +L +L+L+ NQ +G + L ++ N P L T L
Sbjct: 212 --LGILTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 262
Query: 295 FRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328
+++ G N NIS G+ LT ++L+ N
Sbjct: 263 TELKL-GANQISNISPLAGLTA-LTNLELNENQL 294
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 185 IPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLV 244
+P + N K L ++ L N++S +SF N+T L+ L LS+N L PR L+SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 245 QLALDQNQFT 254
L+L N +
Sbjct: 106 LLSLHGNDIS 115
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 30 ISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFS 87
I L+N +S TL + SFS L L LS+N L I P L L+LLSLH N S
Sbjct: 59 IDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 145 KSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQ 204
+ ++EL L NQ + +P + N +L + L +N + + N+ LL L L N+
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 205 LSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251
L PR+F L +L L L N++S +L +L LA+ N
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 167 NLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLS 225
L NL L++ DN L ++P V L +L L+LD NQL PR F +LT L L L
Sbjct: 83 ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 226 FNNLSGSIPREI-GNLRSLVQLALDQNQF 253
+N L S+P+ + L SL +L L NQ
Sbjct: 142 YNELQ-SLPKGVFDKLTSLKELRLYNNQL 169
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 5/176 (2%)
Query: 55 LDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL-LTHLKFLILHSNKLNGS 113
LDL N+L + L+KL+LL L+ N +P IF L +L+ L + NKL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQAL 100
Query: 114 IPPXXXXXXXXXXXXXXXXXSGSIPPDI-GNLKSLSELDLSINQLSGSIPPSM-GNLSNL 171
S+PP + +L L+ L L N+L S+P + L++L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSL 159
Query: 172 NRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN 227
L LY+N L L L L+LD NQL +F +L L L L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 72/193 (37%), Gaps = 35/193 (18%)
Query: 137 IPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLL 196
IP D +LDL N+LS + L+ L L+L DN L ++P +
Sbjct: 35 IPADT------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI------- 80
Query: 197 VLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGF 256
F L NL L+++ N L L +L +L LD+NQ
Sbjct: 81 ----------------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL 124
Query: 257 LPPSLGNICRGGALQYFGVSENHFQGTIPKSL-KYCTSLFRVRVDGNNLTGNISQALGIY 315
P ++ + L Y + N Q ++PK + TSL +R+ N L A
Sbjct: 125 PPRVFDSLTK---LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 316 HNLTFIDLSRNNF 328
L + L N
Sbjct: 181 TELKTLKLDNNQL 193
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFLI 104
F +LA L L N+L + P +L+KL LSL N +P +F LT LK L
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELR 163
Query: 105 LHSNKLN 111
L++N+L
Sbjct: 164 LYNNQLK 170
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 159 GSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTN 218
S+P + + + L+LYDN + P L L L LD NQL+ F LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 219 LIQLFLSFNNLSGSIPR-EIGNLRSLVQLALDQNQF 253
L QL L+ N L SIPR NLRSL + L N +
Sbjct: 80 LTQLSLNDNQLK-SIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 159 GSIPPSMGNLSNLNRLFLYDNLLY-----------------------GSIPPNV-GNLKS 194
S+P G +N L+L+DN + G++P V +L
Sbjct: 32 ASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89
Query: 195 LLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQF 253
L VL L NQL+ F L +L +LF+ N L+ +PR I L L LALDQNQ
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 71/169 (42%), Gaps = 27/169 (15%)
Query: 77 QLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGS 136
Q+L LH N + P L +LK L L SN+L G+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL------------------------GA 78
Query: 137 IPPDI-GNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSL 195
+P + +L L+ LDL NQL+ L +L LF+ N L +P + L L
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137
Query: 196 LVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLV 244
L LD+NQL +F L++L +L F N R+I LR+ V
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYL-FGNPWDCECRDIMYLRNWV 185
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 182 YGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLR 241
+ S+P G + +L L +NQ++ P F +L NL +L+L N L G++P +G
Sbjct: 31 HASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP--VGVFD 85
Query: 242 SLVQLA---LDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVR 298
SL QL L NQ T LP ++ + R L+ + N +P+ ++ T L +
Sbjct: 86 SLTQLTVLDLGTNQLT-VLPSAVFD--RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 299 VDGNNL 304
+D N L
Sbjct: 142 LDQNQL 147
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDE 202
L +L L L N L + +L NL LFL+ N + S+P + L SL L L +
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI-PSVPEHAFRGLHSLDRLLLHQ 185
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI-GNLRSLVQLALDQNQFT 254
N ++ P +F +L L+ L+L NNLS +P E+ LRSL L L+ N +
Sbjct: 186 NHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDNPWV 237
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Query: 144 LKSLSELDLSIN-QLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202
L L +LDLS N QL P + L +L+ L L L P L +L L L +
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLG 262
N L +F +L NL LFL N + L SL +L L QN P +
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR 197
Query: 263 NICRGGALQYFG 274
++ R L F
Sbjct: 198 DLGRLMTLYLFA 209
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
Query: 172 NRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN-NLS 230
R+FL+ N + + + ++L +L L N L+G +F LT L QL LS N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 231 GSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRG-GALQYFGVSENHFQGTIPKSLK 289
P L L L LD+ P + RG ALQY + +N+ Q + +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 290 YCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNN 327
+L + + GN + A H+L + L +N+
Sbjct: 150 DLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNH 187
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 174 LFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSI 233
L+LYDN + P L L L LD NQL+ F LT L QL L+ N L SI
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 101
Query: 234 PR-EIGNLRSLVQLALDQNQF 253
PR NL+SL + L N +
Sbjct: 102 PRGAFDNLKSLTHIWLLNNPW 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 174 LFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSI 233
L+LYDN + P L L L LD NQL+ F LT L QL L+ N L SI
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 93
Query: 234 PR-EIGNLRSLVQLALDQNQF 253
PR NL+SL + L N +
Sbjct: 94 PRGAFDNLKSLTHIWLLNNPW 114
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDE 202
L +L EL L NQL L+NL L+LY N L S+P V L +L L LD
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDN 166
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI-GNLRSLVQLAL 248
NQL F LT L QL L+ N L S+P + L SL + L
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWL 212
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 140 DIGNLKSLSELD---LSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSL 195
DI LK L+ L L+ NQL L+NL L L +N L S+P V L +L
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNL 135
Query: 196 LVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI-GNLRSLVQLALDQNQF 253
L L NQL F LTNL +L L N L S+P + L L QL+L+ NQ
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 142 GNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLD 201
N+ SL LD+S+N L+ YD + +S+LVL L
Sbjct: 400 KNMSSLETLDVSLNSLNSHA---------------YDRTCAWA--------ESILVLNLS 436
Query: 202 ENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSL 261
N L+G + R ++ L NN SIP+++ +L++L +L + NQ +P
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTHLQALQELNVASNQLKS-VPD-- 490
Query: 262 GNICRGGALQYFGVSENHFQGTIP 285
G R +LQY + +N + T P
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 136 SIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDN 179
SIP D+ +L++L EL+++ NQL L++L ++L+DN
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 136 SIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSL 195
+P +I NL +L LDLS N+L+ S+P +G+ L + +DN++ ++P GNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNL 318
Query: 196 LVLQLDENQLS 206
L ++ N L
Sbjct: 319 QFLGVEGNPLE 329
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 171 LNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLS 230
L RL+L N L +P + NL +L VL L N+L+ +P G+ L + F F+N+
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQL-KYFYFFDNMV 305
Query: 231 GSIPREIGNLRSLVQLALDQN 251
++P E GNL +L L ++ N
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGN 326
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 140 DIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQ 199
D NLK+L L L N++S P + L L RL+L N L +P + K+L L+
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELR 127
Query: 200 LDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPP 259
+ EN+++ F L +I + L N L S ++ F G
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--------------GIENGAFQGM--- 170
Query: 260 SLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLT 319
L Y +++ + TIP+ L SL + +DGN +T + +L +NL
Sbjct: 171 --------KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 320 FIDLSRNNF 328
+ LS N+
Sbjct: 220 KLGLSFNSI 228
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 31/189 (16%)
Query: 140 DIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQ 199
D NLK+L L L N++S P + L L RL+L N L +P + K+L L+
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELR 127
Query: 200 LDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPP 259
+ EN+++ F L +I + L N L S ++ F G
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--------------GIENGAFQGM--- 170
Query: 260 SLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLT 319
L Y +++ + TIP+ L SL + +DGN +T + +L +NL
Sbjct: 171 --------KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 320 FIDLSRNNF 328
+ LS N+
Sbjct: 220 KLGLSFNSI 228
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 150 LDLSINQLSGSIPPSM-GNLSNLNRLFLYDNLLYGSIPPNVGN-LKSLLVLQLDENQLSG 207
LDL N L S+P + L++L +L+L N L S+P V N L SL L L NQL
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 208 CIPRSFGNLTNLIQLFLSFNNLSGSIPREI-GNLRSLVQLALDQNQFTGFLPPSLGNICR 266
F LT L +L L+ N L S+P + L L L L QNQ P G R
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSV--PD-GVFDR 146
Query: 267 GGALQYFGVSENHFQGTIP 285
+LQY + +N + T P
Sbjct: 147 LTSLQYIWLHDNPWDCTCP 165
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFLI 104
F+ L YL+LS N+L + L++L+ L+L+ N +P +F LT LK L
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLR 130
Query: 105 LHSNKLNGSIP 115
L+ N+L S+P
Sbjct: 131 LYQNQLK-SVP 140
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 143 NLKSLSELDLSINQLSGSIPPSM-GNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQL 200
L L++L LS NQ+ S+P + L+ L L+L++N L S+P V L L L L
Sbjct: 50 KLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELAL 107
Query: 201 DENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
D NQL F LT+L +++L N S PR
Sbjct: 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 169 SNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN 227
S+ RL L N L S+P V L L L L +NQ+ F LT L L+L N
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 228 NLSGSIPREI-GNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPK 286
L S+P + L L +LALD NQ +P + + R +LQ + N + + P+
Sbjct: 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFD--RLTSLQKIWLHTNPWDCSCPR 142
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 29/137 (21%)
Query: 53 AYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFLILHSNKLN 111
L+L N+L + L++L LSL N +P +F LT L L LH NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKLQ 89
Query: 112 GSIPPXXXXXXXXXXXXXXXXXSGSIPPDI-GNLKSLSELDLSINQLSGSIPPSM-GNLS 169
S+P + L L EL L NQL S+P + L+
Sbjct: 90 ------------------------SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLT 124
Query: 170 NLNRLFLYDNLLYGSIP 186
+L +++L+ N S P
Sbjct: 125 SLQKIWLHTNPWDCSCP 141
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 143 NLKSLSELDLSINQLSGSIPPSM-GNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQL 200
+L L L L+ NQL+ S+P + +L+ L++L+L N L S+P V L L L+L
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 201 DENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR-EIGNLRSLVQLALDQNQF 253
+ NQL +F LTNL L LS N L S+P L L + L NQF
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDE 202
L L+ L+L NQL +L+ L L L +N L S+P V +L L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR-EIGNLRSLVQLALDQNQFTGFLPPSL 261
NQL F LT L +L L+ N L SIP L +L L+L NQ +P
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPH-- 172
Query: 262 GNICRGGALQYFGVSENHF 280
G R G LQ + N F
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 45 SFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104
+F +L L LS N+L + L KLQ ++L N F CEI L+ +++
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS-RCEILYLS--QWIR 206
Query: 105 LHSNKLN 111
+SNK+
Sbjct: 207 ENSNKVK 213
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 143 NLKSLSELDLSINQLSGSIPPSM-GNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQL 200
+L L L L+ NQL+ S+P + +L+ L++L+L N L S+P V L L L+L
Sbjct: 81 DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 201 DENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR-EIGNLRSLVQLALDQNQF 253
+ NQL +F LTNL L LS N L S+P L L + L NQF
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDE 202
L L+ L+L NQL +L+ L L L +N L S+P V +L L L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR-EIGNLRSLVQLALDQNQFTGFLPPSL 261
NQL F LT L +L L+ N L SIP L +L L+L NQ +P
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPH-- 172
Query: 262 GNICRGGALQYFGVSENHFQGTIPKSL 288
G R G LQ + N F + ++L
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCETL 199
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 43 DFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL-LTHLK 101
D F PHL L+L N+L GI P S +Q L L N +I ++FL L LK
Sbjct: 47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLK 105
Query: 102 FLILHSNKLNGSIP 115
L L+ N+++ +P
Sbjct: 106 TLNLYDNQISCVMP 119
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 173 RLFLYDNLLYGSIPPN--VGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLS 230
L L DN L G I + G L L+ L+L NQL+G P +F +++ +L L N +
Sbjct: 33 ELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 231 GSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNI 264
+ L L L L NQ + +P S ++
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 136 SIPPDIGNLKSLSELDLSINQLSGSIPPS--MGNLSNLNRLFLYDNLLYGSIPPNVGNLK 193
IP DI +EL L+ N+L G I G L +L +L L N L G P
Sbjct: 22 EIPRDIP--LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 194 SLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQF 253
+ LQL EN++ + F L L L L N +S +P +L SL L L N F
Sbjct: 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 89/221 (40%), Gaps = 33/221 (14%)
Query: 45 SFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL-LTHLKFL 103
SF HL L LS N + I L+ L L L N + IP F+ L+ LK L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141
Query: 104 ILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSELDL-SINQLSGSIP 162
L +N + SIP + SL LDL + +LS
Sbjct: 142 WLRNNPIE-SIPSYA----------------------FNRIPSLRRLDLGELKRLSYISE 178
Query: 163 PSMGNLSNLNRLFLYDNLLYGSIP--PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLI 220
+ LSNL Y NL ++ PN+ L L L L N LS P SF L +L
Sbjct: 179 GAFEGLSNLR----YLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234
Query: 221 QLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSL 261
+L++ + + NL+SLV++ L N T LP L
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDL 274
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 27/163 (16%)
Query: 19 ISCNDAGRVINIS---LTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSK 75
IS +D R +N+ LT+ G+ T+ + SFS L +LDLS+N L + LS
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 76 LQLLSLHANAFSGKIPCEIFLLTHL-KFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXS 134
L L+L N + K E L +HL K IL ++ +
Sbjct: 126 LTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMD--------------------TFT 163
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLY 177
D L L EL++ + L P S+ ++ N++ L L+
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 90/226 (39%), Gaps = 36/226 (15%)
Query: 34 NTGLSGTLHDFS-FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPC 92
N G + L D S S L YL ++ +++ + P I NL+ L LSL+ N P
Sbjct: 138 NLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP- 194
Query: 93 EIFLLTHLKFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSELDL 152
+ LT L + + N++ P + N L+ L +
Sbjct: 195 -LASLTSLHYFTAYVNQITDITP-------------------------VANXTRLNSLKI 228
Query: 153 SINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRS 212
N+++ P + NLS L L + N + S V +L L L + NQ+S
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISDI--SV 282
Query: 213 FGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLP 258
NL+ L LFL+ N L IG L +L L L QN T P
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 168 LSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN 227
L+NL L L N + P + NL L L + N+++ + NLTNL +L+L+ +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 228 NLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKS 287
N+S P + NL L L N L P + L Y V+E+ + P
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSP----LSNXTGLNYLTVTESKVKDVTP-- 172
Query: 288 LKYCTSLFRVRVDGNNL 304
+ T L+ + ++ N +
Sbjct: 173 IANLTDLYSLSLNYNQI 189
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIP 210
DLS +++ + + ++L +L L N + L LL L L +N L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 211 RSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGAL 270
R F NL L L LS+N++ + L +L +LALD NQ +P G R +L
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD--GIFDRLTSL 397
Query: 271 QYFGVSENHFQGTIPK 286
Q + N + + P+
Sbjct: 398 QKIWLHTNPWDCSCPR 413
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 4 ATNVSSKIRPCAWSGISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELF 63
A N +KI A+ G++ ++ ++L+ L G++ F L LDLS+N +
Sbjct: 307 AQNEINKIDDNAFWGLT-----HLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 64 GIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFLILHSNKLNGSIP 115
+ L L+ L+L N +P IF LT L+ + LH+N + S P
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 150 LDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDENQLSGC 208
+DLS+N ++ S L +L L + I N L SL++L+LD NQ
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 209 IPRSFGNLTNLIQLFLSFNNLSGSIPREIGN----LRSLVQLALDQNQFTGFLPPSL 261
+F L NL L L+ NL G++ GN L SL L L N P S
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGN-----LKSLLVL 198
L L +L+LS N L GSI M NL++L + D L Y I +G+ L +L L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRM--FENLDKLEVLD-LSYNHIRA-LGDQSFLGLPNLKEL 376
Query: 199 QLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
LD NQL F LT+L +++L N S PR
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 134 SGSIPPDIGNLKSLSELDLSINQLS--GSIPPSMGNLSNLNRLFLYDNLL-YGSIPPNVG 190
+ ++ + G+L L L L +NQL I + +L +L + N + Y +
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396
Query: 191 NLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQ 250
KSLL L + N L+ I R ++ L +N SIP+++ L +L +L +
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH---SNKIKSIPKQVVKLEALQELNVAS 453
Query: 251 NQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPK 286
NQ +P + + R +LQ + N + + P+
Sbjct: 454 NQLKS-VPDGIFD--RLTSLQKIWLHTNPWDCSCPR 486
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 46 FSLFPHLAYLDLSFNELFGI-IPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFL 103
F L YLDLS N+L I P + L+ L L NAF C+ F ++ LKFL
Sbjct: 65 FKFNQELEYLDLSHNKLVKISCHPTVN----LKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 104 ILHSNKLNGS 113
L + L S
Sbjct: 121 GLSTTHLEKS 130
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 27/163 (16%)
Query: 19 ISCNDAGRVINIS---LTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSK 75
IS +D R +N+ LT+ G+ T+ + SFS L +LDLS+N L + LS
Sbjct: 41 ISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 99
Query: 76 LQLLSLHANAFSGKIPCEIFLLTHL-KFLILHSNKLNGSIPPXXXXXXXXXXXXXXXXXS 134
L L+L N + K E L +HL K IL ++ +
Sbjct: 100 LTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMD--------------------TFT 137
Query: 135 GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLY 177
D L L EL++ + L P S+ ++ N++ L L+
Sbjct: 138 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 180
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 187 PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
P+ L LLVL++ NQL F LT+L +++L N S PR
Sbjct: 467 PDASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDEN 203
L LS L L+ N + P S L++L L + L +G L +L L + N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 204 QLSGC-IPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRS--LVQLALD 249
+ C +P F NLTNL+ + LS+N + ++ LR V L+LD
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
Query: 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHL 100
L +SFS F L +LDLS E+ I L L L L N P LT L
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 101 KFLILHSNKLNG--SIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSELDLSIN 155
+ L+ KL S P S +P NL +L +DLS N
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDEN 203
L LS L L+ N + P S L++L L + L +G L +L L + N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 204 QLSGC-IPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRS--LVQLALD 249
+ C +P F NLTNL+ + LS+N + ++ LR V L+LD
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 182
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 2/117 (1%)
Query: 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHL 100
L +SFS F L +LDLS E+ I L L L L N P LT L
Sbjct: 42 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 101
Query: 101 KFLILHSNKLNG--SIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSELDLSIN 155
+ L+ KL S P S +P NL +L +DLS N
Sbjct: 102 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 141 IGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQL 200
+ NL ++EL+LS N L ++ L ++ L L + P + L +L VL L
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136
Query: 201 DENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLP 258
D NQ++ P LTNL +LS N S + NL L L D N+ + P
Sbjct: 137 DLNQITNISP--LAGLTNL--QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 1 INDATNVSSKIRPCAWSGISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFN 60
+N A N +KI A+ G+ D +V+N+S L G L+ +F P +AY+DL N
Sbjct: 295 LNLAYNKINKIADEAFYGL---DNLQVLNLSY---NLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 61 ELFGIIPPQIGNLSKLQLLSLHANAFS 87
+ I L KLQ L L NA +
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT 375
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 143 NLKSLSELDLSINQL-SGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNL--KSLLVLQ 199
NLK+L+ LDLS NQ+ S + PS G L++L + N ++ + L K+L
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 200 LDENQLSGCIPRSFGNLTN 218
L N L + +G N
Sbjct: 181 LAANSLYSRVSVDWGKCMN 199
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 159 GSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTN 218
S+P G ++ RL+L +N + P +L +L L + N+L+ F LT
Sbjct: 25 ASVP--AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 219 LIQLFLSFNNLSGSIPR-EIGNLRSLVQLALDQNQF 253
L QL L+ N+L SIPR NL+SL + L N +
Sbjct: 83 LTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 137 IPP-DIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSL 195
IPP K L +DLS NQ+S P + L +LN L LY N + L SL
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 196 LVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQF 253
+L L+ N+++ +F +L NL L L N L LR++ + L QN F
Sbjct: 107 QLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 77/208 (37%), Gaps = 21/208 (10%)
Query: 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN--------AFSGKIPC 92
L +SF FP L LDLS E+ I +LS L L L N AFSG
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---- 99
Query: 93 EIFLLTHLKFLILHSNKLNG--SIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSEL 150
L+ L+ L+ L + P S +P NL +L L
Sbjct: 100 ----LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS---IPPNVGNLKSLLVLQLDENQLSG 207
DLS N++ + L + L L +L I P L L LD NQL
Sbjct: 156 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
Query: 208 CIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
F LT+L +++L N S PR
Sbjct: 216 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 137 IPP-DIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSL 195
IPP K L +DLS NQ+S P + L +LN L LY N + L SL
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 196 LVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQF 253
+L L+ N+++ +F +L NL L L N L LR++ + L QN F
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 5/194 (2%)
Query: 134 SGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLK 193
S P NL +L L L N+L LSNL +L + +N + + +L
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128
Query: 194 SLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPRE-IGNLRSLVQLALDQNQ 252
+L L++ +N L R+F L +L QL L NL+ SIP E + +L L+ L L
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187
Query: 253 FTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQAL 312
S + R L+ +S + T+ + Y +L + + NLT A+
Sbjct: 188 INAIRDYSFKRLYR---LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244
Query: 313 GIYHNLTFIDLSRN 326
L F++LS N
Sbjct: 245 RHLVYLRFLNLSYN 258
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 40 TLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFL-LT 98
TL+ F+ FPHL L+L+ N + + P NL L+ L L +N IP +F L+
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS 104
Query: 99 HLKFLILHSNKL 110
+L L + NK+
Sbjct: 105 NLTKLDISENKI 116
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 77/208 (37%), Gaps = 21/208 (10%)
Query: 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN--------AFSGKIPC 92
L +SF FP L LDLS E+ I +LS L L L N AFSG
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---- 100
Query: 93 EIFLLTHLKFLILHSNKLNG--SIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSEL 150
L+ L+ L+ L + P S +P NL +L L
Sbjct: 101 ----LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS---IPPNVGNLKSLLVLQLDENQLSG 207
DLS N++ + L + L L +L I P L L LD NQL
Sbjct: 157 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
Query: 208 CIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
F LT+L +++L N S PR
Sbjct: 217 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 77/208 (37%), Gaps = 21/208 (10%)
Query: 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN--------AFSGKIPC 92
L +SF FP L LDLS E+ I +LS L L L N AFSG
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---- 99
Query: 93 EIFLLTHLKFLILHSNKLNG--SIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSEL 150
L+ L+ L+ L + P S +P NL +L L
Sbjct: 100 ----LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS---IPPNVGNLKSLLVLQLDENQLSG 207
DLS N++ + L + L L +L I P L L LD NQL
Sbjct: 156 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
Query: 208 CIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
F LT+L +++L N S PR
Sbjct: 216 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 77/208 (37%), Gaps = 21/208 (10%)
Query: 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN--------AFSGKIPC 92
L +SF FP L LDLS E+ I +LS L L L N AFSG
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---- 100
Query: 93 EIFLLTHLKFLILHSNKLNG--SIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSEL 150
L+ L+ L+ L + P S +P NL +L L
Sbjct: 101 ----LSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS---IPPNVGNLKSLLVLQLDENQLSG 207
DLS N++ + L + L L +L I P L L LD NQL
Sbjct: 157 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
Query: 208 CIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
F LT+L +++L N S PR
Sbjct: 217 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 77/208 (37%), Gaps = 21/208 (10%)
Query: 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN--------AFSGKIPC 92
L +SF FP L LDLS E+ I +LS L L L N AFSG
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---- 98
Query: 93 EIFLLTHLKFLILHSNKLNG--SIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSEL 150
L+ L+ L+ L + P S +P NL +L L
Sbjct: 99 ----LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS---IPPNVGNLKSLLVLQLDENQLSG 207
DLS N++ + L + L L +L I P L L LD NQL
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214
Query: 208 CIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
F LT+L +++L N S PR
Sbjct: 215 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 139 PDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYD--NLLYGSIPPNVGNLKSLL 196
P I +L L ELDL + PP G + L RL L D NLL ++P ++ L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL--TLPLDIHRLT--- 277
Query: 197 VLQLDENQLSGCI 209
QL++ L GC+
Sbjct: 278 --QLEKLDLRGCV 288
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 32/211 (15%)
Query: 45 SFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFL 103
+F HL L LS N + I L L L L N + +P + F L+ L+ L
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLREL 112
Query: 104 ILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSELDL-SINQLSGSIP 162
L +N + SIP + SL LDL + +L
Sbjct: 113 WLRNNPIE-SIPSYA----------------------FNRVPSLRRLDLGELKRLEYISE 149
Query: 163 PSMGNLSNLNRLFLYDNLLYGSIP--PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLI 220
+ L NL Y NL ++ PN+ L L L+L N+L P SF LT+L
Sbjct: 150 AAFEGLVNLR----YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 221 QLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251
+L+L ++ +L+SL +L L N
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 83/211 (39%), Gaps = 32/211 (15%)
Query: 45 SFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFL 103
+F HL L LS N + I L L L L N + +P + F L+ L+ L
Sbjct: 54 TFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT-VPTQAFEYLSKLREL 112
Query: 104 ILHSNKLNGSIPPXXXXXXXXXXXXXXXXXSGSIPPDIGNLKSLSELDL-SINQLSGSIP 162
L +N + SIP + SL LDL + +L
Sbjct: 113 WLRNNPIE-SIPSYA----------------------FNRVPSLRRLDLGELKRLEYISE 149
Query: 163 PSMGNLSNLNRLFLYDNLLYGSIP--PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLI 220
+ L NL Y NL ++ PN+ L L L+L N+L P SF LT+L
Sbjct: 150 AAFEGLVNLR----YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 221 QLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251
+L+L ++ +L+SL +L L N
Sbjct: 206 KLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 159 GSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTN 218
S+P + + + L LY N + P +L L L L NQL+ F LT
Sbjct: 32 ASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 219 LIQLFLSFNNLSGSIPREI-GNLRSLVQLALDQNQF 253
L L L N L SIP + NL+SL + L N +
Sbjct: 90 LTHLALHINQLK-SIPMGVFDNLKSLTHIYLFNNPW 124
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 56 DLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP 115
DLS +++F ++ + + L+ L+L N + + LTHLK L L +N+L S+P
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVP 339
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 150 LDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDENQLSGC 208
+DLS+N ++ S L +L L + I N L SL++L+LD NQ
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 209 IPRSFGNLTNLIQLFLSFNNLSGSIPREIGN----LRSLVQLALDQNQFTGFLPPSL 261
+F L NL L L+ NL G++ GN L SL L L N P S
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 151 DLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIP 210
DLS +++ + + ++L +L L N + L L L LD NQL
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPD 340
Query: 211 RSFGNLTNLIQLFLSFNNLSGSIPR 235
F LT+L +++L N S PR
Sbjct: 341 GIFDRLTSLQKIWLHTNPWDCSCPR 365
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 144 LKSLSELDLSINQLSGSIPPSM-GNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202
L SL L ++ N + P + L NL L L L P +L SL VL +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR 235
NQL F LT+L +++L N S PR
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 32 LTNTGLS-GTLHDF---SFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFS 87
LT LS LHD SFS P L YL L +N + + P LS L+ LSL AF+
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL-KRAFT 308
Query: 88 GK 89
+
Sbjct: 309 KQ 310
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 27 VINISLTNTGLSGTLHD-FSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANA 85
+ N+SL N L T FS + +L LDLS+N L + L L+ LSL N
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 86 FSGKIPCEIFLLTHLKFLIL 105
P + L++L++L L
Sbjct: 284 IQRLSPRSFYGLSNLRYLSL 303
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 137 IPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYD---NLLYGSIPPNVGNLK 193
IP D+ + +++ L+L+ NQL +PP+ N + ++L + D N + P L
Sbjct: 19 IPDDLPS--NITVLNLTHNQLR-RLPPT--NFTRYSQLAILDAGFNSISKLEPELCQILP 73
Query: 194 SLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251
L VL L N+LS ++F TNL +L L N++ N ++L++L L N
Sbjct: 74 LLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 46 FSLFPHLAYLDLSFNE 61
+FPHLAY+D+ +NE
Sbjct: 116 LQMFPHLAYVDIDYNE 131
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 46 FSLFPHLAYLDLSFNE 61
+FPHLAY+D+ +NE
Sbjct: 115 LQMFPHLAYVDIDYNE 130
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 46 FSLFPHLAYLDLSFNE 61
+FPHLAY+D+ +NE
Sbjct: 107 LQMFPHLAYVDIDYNE 122
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 147 LSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLS 206
L EL +S NQL+ S+P S L +L+ Y+N L S+P L+ L V +NQL+
Sbjct: 143 LQELSVSDNQLA-SLP---ALPSELCKLWAYNNQLT-SLPMLPSGLQELSV---SDNQLA 194
Query: 207 GCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGF--LPPSLGNI 264
S L + + ++NN S+P L+ L+ + N+ T LP L +
Sbjct: 195 -----SLPTLPSELYKLWAYNNRLTSLPALPSGLKELI---VSGNRLTSLPVLPSELKEL 246
Query: 265 CRGG-----------ALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQAL 312
G L V N +P+SL + +S V ++GN L+ QAL
Sbjct: 247 MVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 137 IPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLL 196
+P D+ +++ L+L+ NQL + S L L + N + P L L
Sbjct: 19 VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 197 VLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251
VL L N+LS ++F TNL +L L N++ ++L+ L L N
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 137 IPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLL 196
+P D+ +++ L+L+ NQL + S L L + N + P L L
Sbjct: 24 VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 197 VLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251
VL L N+LS ++F TNL +L L N++ ++L+ L L N
Sbjct: 82 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 137 IPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLL 196
+P D+ +++ L+L+ NQL + S L L + N + P L L
Sbjct: 29 VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 197 VLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251
VL L N+LS ++F TNL +L L N++ ++L+ L L N
Sbjct: 87 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 168 LSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN 227
L L L++ N L P+ LLV+++ NQL F LT+L +++L N
Sbjct: 450 LPRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Query: 228 NLSGSIPR 235
S PR
Sbjct: 508 PWDCSCPR 515
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,906,354
Number of Sequences: 62578
Number of extensions: 338312
Number of successful extensions: 1320
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 346
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)