Query 046683
Match_columns 329
No_of_seqs 162 out of 2588
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 03:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-35 2.9E-40 290.0 22.7 314 9-328 53-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-33 6.1E-38 273.7 20.2 281 45-328 159-440 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.7E-32 5.8E-37 234.3 3.8 300 25-328 125-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 2E-32 4.3E-37 235.0 0.4 298 25-325 149-448 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.1E-26 6.7E-31 199.1 -4.0 295 25-328 7-328 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.8E-26 6E-31 199.4 -6.9 292 26-328 56-351 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.8E-25 4E-30 184.5 -8.4 292 25-329 183-541 (565)
8 PLN03210 Resistant to P. syrin 99.9 1E-20 2.2E-25 186.5 21.4 284 26-327 590-904 (1153)
9 PLN03210 Resistant to P. syrin 99.9 5E-20 1.1E-24 181.7 23.7 267 45-327 583-880 (1153)
10 PRK15387 E3 ubiquitin-protein 99.8 7.5E-19 1.6E-23 162.6 18.2 256 27-329 203-458 (788)
11 KOG4237 Extracellular matrix p 99.8 2.4E-22 5.1E-27 165.8 -5.8 290 9-304 48-358 (498)
12 KOG0472 Leucine-rich repeat pr 99.8 2.4E-23 5.1E-28 172.2 -11.8 263 52-328 47-309 (565)
13 KOG0618 Serine/threonine phosp 99.8 1.5E-20 3.3E-25 170.2 -1.6 290 25-326 219-510 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 1.4E-17 2.9E-22 154.4 17.4 246 25-314 222-467 (788)
15 KOG4237 Extracellular matrix p 99.8 5.4E-21 1.2E-25 157.9 -5.0 290 29-328 50-358 (498)
16 cd00116 LRR_RI Leucine-rich re 99.7 6.3E-20 1.4E-24 158.0 -1.8 280 29-328 2-319 (319)
17 PRK15370 E3 ubiquitin-protein 99.7 2.1E-17 4.5E-22 153.8 13.9 245 27-305 180-428 (754)
18 KOG0618 Serine/threonine phosp 99.7 8.5E-20 1.8E-24 165.4 -3.6 289 26-327 178-487 (1081)
19 PRK15370 E3 ubiquitin-protein 99.7 5E-17 1.1E-21 151.3 14.3 246 51-329 179-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.7 8.7E-20 1.9E-24 157.1 -4.9 180 26-206 24-234 (319)
21 KOG0617 Ras suppressor protein 99.6 4.3E-17 9.3E-22 120.3 -5.7 153 74-230 33-186 (264)
22 KOG0617 Ras suppressor protein 99.5 1.6E-16 3.4E-21 117.3 -4.2 161 46-210 29-190 (264)
23 KOG1909 Ran GTPase-activating 99.2 4.9E-13 1.1E-17 109.6 -1.6 248 45-304 25-310 (382)
24 KOG3207 Beta-tubulin folding c 99.2 1E-12 2.2E-17 110.8 -0.2 210 46-255 117-340 (505)
25 KOG1259 Nischarin, modulator o 99.2 1.9E-12 4E-17 104.4 1.3 225 71-306 179-413 (490)
26 KOG1909 Ran GTPase-activating 99.2 2.5E-12 5.5E-17 105.5 -1.4 237 92-328 24-310 (382)
27 KOG3207 Beta-tubulin folding c 99.1 5.6E-12 1.2E-16 106.4 -1.5 207 72-281 119-339 (505)
28 PF14580 LRR_9: Leucine-rich r 99.0 2E-10 4.3E-15 88.2 4.7 127 190-323 16-147 (175)
29 PF14580 LRR_9: Leucine-rich r 99.0 3.3E-10 7.1E-15 87.0 5.8 130 164-300 14-148 (175)
30 COG4886 Leucine-rich repeat (L 99.0 3.9E-10 8.5E-15 100.0 7.1 177 71-254 113-290 (394)
31 COG4886 Leucine-rich repeat (L 99.0 4.9E-10 1.1E-14 99.4 7.1 198 102-310 97-295 (394)
32 KOG1259 Nischarin, modulator o 99.0 4.9E-11 1.1E-15 96.3 0.0 203 117-329 178-412 (490)
33 PLN03150 hypothetical protein; 99.0 1.5E-09 3.4E-14 100.9 8.9 117 15-132 403-526 (623)
34 KOG4658 Apoptotic ATPase [Sign 99.0 4.3E-10 9.4E-15 107.1 5.1 272 25-306 523-808 (889)
35 PF13855 LRR_8: Leucine rich r 99.0 5.3E-10 1.2E-14 70.7 3.6 61 268-328 1-61 (61)
36 KOG0532 Leucine-rich repeat (L 98.9 3.2E-11 6.9E-16 105.2 -4.0 168 126-305 80-247 (722)
37 KOG4658 Apoptotic ATPase [Sign 98.9 9.1E-10 2E-14 105.0 4.2 228 25-256 545-785 (889)
38 KOG0532 Leucine-rich repeat (L 98.9 7.4E-11 1.6E-15 103.0 -4.3 191 53-252 78-271 (722)
39 PF13855 LRR_8: Leucine rich r 98.9 3E-09 6.6E-14 67.2 4.0 58 26-84 2-59 (61)
40 PLN03150 hypothetical protein; 98.8 8.7E-09 1.9E-13 96.0 7.7 106 219-327 420-526 (623)
41 KOG2120 SCF ubiquitin ligase, 98.8 4.2E-11 9.1E-16 96.5 -8.6 179 147-326 187-373 (419)
42 KOG4341 F-box protein containi 98.7 8.4E-11 1.8E-15 98.9 -7.6 298 25-322 138-458 (483)
43 KOG2982 Uncharacterized conser 98.7 4.2E-09 9.1E-14 85.2 1.2 230 47-276 42-287 (418)
44 KOG2120 SCF ubiquitin ligase, 98.6 2.4E-10 5.2E-15 92.3 -7.6 175 51-227 186-373 (419)
45 KOG0531 Protein phosphatase 1, 98.6 4E-09 8.6E-14 93.9 -1.5 244 48-307 70-320 (414)
46 KOG0531 Protein phosphatase 1, 98.6 6.9E-09 1.5E-13 92.4 -0.8 107 46-157 91-198 (414)
47 KOG2982 Uncharacterized conser 98.5 1.6E-08 3.6E-13 81.8 -1.1 212 71-284 42-265 (418)
48 KOG1859 Leucine-rich repeat pr 98.4 2.5E-09 5.3E-14 96.3 -8.5 126 194-328 165-291 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.3 8.3E-08 1.8E-12 76.9 -1.1 235 94-328 26-315 (388)
50 KOG4341 F-box protein containi 98.3 1E-08 2.2E-13 86.6 -6.6 314 11-327 96-437 (483)
51 PF12799 LRR_4: Leucine Rich r 98.3 1.4E-06 3.1E-11 50.4 3.9 36 293-329 2-37 (44)
52 COG5238 RNA1 Ran GTPase-activa 98.3 1.2E-07 2.6E-12 76.0 -1.2 206 49-254 29-285 (388)
53 KOG1644 U2-associated snRNP A' 98.2 3.1E-06 6.7E-11 65.0 6.0 108 169-278 42-150 (233)
54 PF13306 LRR_5: Leucine rich r 98.1 9.7E-06 2.1E-10 59.7 7.2 126 41-171 3-128 (129)
55 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.3E-10 62.1 5.7 103 99-202 43-149 (233)
56 KOG1859 Leucine-rich repeat pr 98.0 5.2E-08 1.1E-12 88.0 -9.1 107 142-253 184-291 (1096)
57 KOG3665 ZYG-1-like serine/thre 97.9 2.5E-06 5.4E-11 79.8 0.3 132 74-207 122-264 (699)
58 PF13306 LRR_5: Leucine rich r 97.9 7.4E-05 1.6E-09 54.9 7.4 107 67-178 5-112 (129)
59 KOG3665 ZYG-1-like serine/thre 97.8 5.6E-06 1.2E-10 77.6 1.4 151 26-178 123-284 (699)
60 KOG4579 Leucine-rich repeat (L 97.8 3E-07 6.4E-12 66.1 -5.5 113 20-134 22-136 (177)
61 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.9E-10 45.8 2.3 36 51-87 2-37 (44)
62 PRK15386 type III secretion pr 97.8 0.00039 8.4E-09 60.6 10.9 56 47-108 49-104 (426)
63 PRK15386 type III secretion pr 97.6 0.0006 1.3E-08 59.5 10.5 136 70-227 48-187 (426)
64 KOG4579 Leucine-rich repeat (L 97.5 5.2E-06 1.1E-10 59.8 -3.3 89 25-116 53-141 (177)
65 KOG2739 Leucine-rich acidic nu 97.5 3.9E-05 8.4E-10 61.5 0.9 85 193-281 43-129 (260)
66 KOG2739 Leucine-rich acidic nu 97.3 0.00019 4.2E-09 57.7 3.1 104 215-323 41-150 (260)
67 KOG1947 Leucine rich repeat pr 97.1 1.3E-05 2.8E-10 73.1 -5.9 112 46-157 184-307 (482)
68 KOG2123 Uncharacterized conser 97.0 3.1E-05 6.8E-10 62.7 -4.2 100 216-322 18-123 (388)
69 KOG1947 Leucine rich repeat pr 97.0 2.3E-05 5E-10 71.5 -5.9 16 237-252 358-373 (482)
70 KOG2123 Uncharacterized conser 96.8 3.1E-05 6.6E-10 62.7 -5.7 86 18-109 12-99 (388)
71 PF00560 LRR_1: Leucine Rich R 94.7 0.02 4.4E-07 27.3 1.2 19 294-313 2-20 (22)
72 KOG3864 Uncharacterized conser 94.6 0.007 1.5E-07 47.0 -0.6 86 217-304 101-188 (221)
73 PF13516 LRR_6: Leucine Rich r 94.6 0.02 4.4E-07 28.0 1.2 23 291-313 1-23 (24)
74 PF13504 LRR_7: Leucine rich r 94.5 0.027 5.9E-07 25.0 1.3 14 316-329 1-14 (17)
75 KOG3864 Uncharacterized conser 94.4 0.0023 5.1E-08 49.6 -3.6 83 193-278 101-186 (221)
76 KOG4308 LRR-containing protein 92.4 0.0002 4.4E-09 64.4 -14.3 35 100-134 89-128 (478)
77 KOG4308 LRR-containing protein 91.5 0.00068 1.5E-08 61.1 -12.0 186 122-307 88-305 (478)
78 smart00368 LRR_RI Leucine rich 86.5 0.6 1.3E-05 23.7 1.7 22 292-313 2-23 (28)
79 smart00365 LRR_SD22 Leucine-ri 86.4 0.61 1.3E-05 23.3 1.6 13 316-328 2-14 (26)
80 smart00370 LRR Leucine-rich re 86.2 0.66 1.4E-05 22.9 1.8 13 75-87 3-15 (26)
81 smart00369 LRR_TYP Leucine-ric 86.2 0.66 1.4E-05 22.9 1.8 13 75-87 3-15 (26)
82 smart00367 LRR_CC Leucine-rich 80.7 1.2 2.6E-05 22.1 1.3 18 291-308 1-19 (26)
83 KOG0473 Leucine-rich repeat pr 78.7 0.053 1.1E-06 43.4 -6.0 93 40-134 32-124 (326)
84 KOG3763 mRNA export factor TAP 72.9 2.5 5.5E-05 38.5 2.1 66 239-306 216-284 (585)
85 smart00364 LRR_BAC Leucine-ric 69.4 3.1 6.8E-05 20.7 1.1 13 317-329 3-15 (26)
86 KOG0473 Leucine-rich repeat pr 60.2 0.15 3.1E-06 41.0 -7.1 87 70-158 38-124 (326)
87 PF08263 LRRNT_2: Leucine rich 58.7 5 0.00011 22.6 0.8 13 10-22 31-43 (43)
88 KOG4242 Predicted myosin-I-bin 57.3 61 0.0013 29.5 7.4 64 242-305 414-481 (553)
89 KOG3763 mRNA export factor TAP 56.2 5.1 0.00011 36.6 0.8 63 168-230 217-283 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-35 Score=290.04 Aligned_cols=314 Identities=39% Similarity=0.595 Sum_probs=236.7
Q ss_pred cCCCCceecceeecCCCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCch-hcCCCCCCcEEecCCcccc
Q 046683 9 SKIRPCAWSGISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPP-QIGNLSKLQLLSLHANAFS 87 (329)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~ 87 (329)
...++|.|.|..|...++++.|+++++.+.+.++. .+..+++|+.|++++|.+....+. .+..+++|++|++++|.+.
T Consensus 53 ~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~ 131 (968)
T PLN00113 53 SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131 (968)
T ss_pred CCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc
Confidence 45789999999998878999999999999887766 889999999999999998855554 4458889999999988877
Q ss_pred cccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCcccc
Q 046683 88 GKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMG 166 (329)
Q Consensus 88 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 166 (329)
+..|. ..+++|++|++++|.+....+ .+..+++|++|++++|.+....|..+..+++|++|++++|.+.+..|..+.
T Consensus 132 ~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 132 GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 55554 357788888888887764433 477788888888888877766777777788888888888877767777777
Q ss_pred CCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEE
Q 046683 167 NLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQL 246 (329)
Q Consensus 167 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 246 (329)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 77888888888877776666667777788888887777776667677777777777777777776666677777777777
Q ss_pred EccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCc
Q 046683 247 ALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRN 326 (329)
Q Consensus 247 ~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 326 (329)
++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|
T Consensus 290 ~Ls~n~l~~~~p~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 290 DLSDNSLSGEIPELVI---QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred ECcCCeeccCCChhHc---CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 7777777655554443 3466777777777666666666666677777777777776666666666667777777666
Q ss_pred cc
Q 046683 327 NF 328 (329)
Q Consensus 327 ~~ 328 (329)
++
T Consensus 367 ~l 368 (968)
T PLN00113 367 NL 368 (968)
T ss_pred ee
Confidence 54
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-33 Score=273.73 Aligned_cols=281 Identities=40% Similarity=0.595 Sum_probs=139.2
Q ss_pred ccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCc
Q 046683 45 SFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNL 123 (329)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L 123 (329)
.+..+++|++|++++|.+....+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+ .+..+++|
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 34444444444444444443344444444444444444444444444444444444444444444433222 24444555
Q ss_pred cEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCC
Q 046683 124 VKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDEN 203 (329)
Q Consensus 124 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (329)
++|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 55555555444444444555555555555555554444445555555555555555554444444455555555555555
Q ss_pred cCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCccccc
Q 046683 204 QLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGT 283 (329)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~ 283 (329)
.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+. ...+++.|++++|.+.+.
T Consensus 319 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~---~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC---SSGNLFKLILFSNSLEGE 395 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh---CcCCCCEEECcCCEeccc
Confidence 55544455555555566666655555555555555555666666665555443333221 223444444444444444
Q ss_pred CCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 284 IPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 284 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
.|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 444444555555555555555555555555555555555555543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.7e-32 Score=234.29 Aligned_cols=300 Identities=23% Similarity=0.196 Sum_probs=227.7
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++.+|+|..|-|+ .+....++-+|.|+.|+|+.|.|+.+....|..-.++++|++++|+|+..-...|..+.+|..|.
T Consensus 125 ghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 46777777776655 45454677778888888888888776666777777888888888888865566777778888888
Q ss_pred eecCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCC
Q 046683 105 LHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 105 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
++.|.++..+.. ++++|+|+.|++..|.+.......|.+++.|+.|.+..|++......+|..+.++++|++..|++..
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 888888776663 6778888888888888875556778888888888888888776667778888888888888888877
Q ss_pred CCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccc
Q 046683 184 SIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGN 263 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 263 (329)
.....+-+++.|+.|+++.|.|...-...++.+++|++|++++|.++...+..|..+..|+.|++++|.+.......|
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af-- 361 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF-- 361 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH--
Confidence 666677778888888888888877777777777888888888888887777788888888888888888764333333
Q ss_pred cccCCCceEEeccCCccccc---CCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 264 ICRGGALQYFGVSENHFQGT---IPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 264 ~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
..+++|++||++.|.+... ....|..++.|+.|++.||++....-.+|.++++|+.|||.+|.|
T Consensus 362 -~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 362 -VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred -HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 3447888888888876532 233466778888888888888877777888888888888888765
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2e-32 Score=235.04 Aligned_cols=298 Identities=19% Similarity=0.182 Sum_probs=269.5
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccC-cccccCCCccEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIP-CEIFLLTHLKFL 103 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L 103 (329)
+-++.|||+.|.++ .++...|..-+++++|+|++|.|++.....|..+.+|.+|.++.|+++ .+| ..|.++++|+.|
T Consensus 149 ~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 149 PALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhh
Confidence 45889999999887 777767878789999999999999998899999999999999999999 555 477789999999
Q ss_pred EeecCcCCCC-CCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccC
Q 046683 104 ILHSNKLNGS-IPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLY 182 (329)
Q Consensus 104 ~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 182 (329)
++..|.+... +-.+..++.|+.|.+.+|++.......|-.+.++++|++..|++..+-..++.+++.|+.|+++.|.+.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 9999998765 557899999999999999999888999999999999999999999888889999999999999999999
Q ss_pred CCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccc
Q 046683 183 GSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLG 262 (329)
Q Consensus 183 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 262 (329)
.+-.+.+..+++|+.|+++.|.++...+..|..+..|++|.++.|.+.......|..+.+|+.|+++.|.+...+.+.-.
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 88888899999999999999999988889999999999999999999877778999999999999999998765566556
Q ss_pred ccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCC
Q 046683 263 NICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSR 325 (329)
Q Consensus 263 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 325 (329)
.+..++.|+.|++.+|++.......|..+++|++|++.+|.|....+.+|..+ .|+.|-+..
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 66678999999999999996666789999999999999999999999999998 888886653
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.1e-26 Score=199.14 Aligned_cols=295 Identities=29% Similarity=0.374 Sum_probs=183.8
Q ss_pred CCeeEEeecCCCCcCc-cCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccc----------------
Q 046683 25 GRVINISLTNTGLSGT-LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFS---------------- 87 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~---------------- 87 (329)
+-++-+|+++|+++|. +|. ..+.+..++.|.+....+.. +++.++.+.+|++|.+.+|++.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~-~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPH-DVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCch-hHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 3455667777777643 444 55666666666666665542 3344455555555555555443
Q ss_pred -------c-ccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecc
Q 046683 88 -------G-KIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSG 159 (329)
Q Consensus 88 -------~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 159 (329)
. -.|..+..+..|..|++++|++...+..+..-.++..|++++|+|..+....+-+++.|-.|++++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-
Confidence 1 1344444555555555555555544444555555555555555555444444455555555555555554
Q ss_pred cCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCC-CCCCccccCCCCCcEEEccCccccCCCCcccc
Q 046683 160 SIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLS-GCIPRSFGNLTNLIQLFLSFNNLSGSIPREIG 238 (329)
Q Consensus 160 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 238 (329)
.+|..+..+..|++|.+++|.+....-..+..++.|+.|++++..-+ ..+|..+..+.+|..++++.|.+. ..|..+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 34445555556666666666554333333455566677777666543 346667777778888888888877 6777777
Q ss_pred CCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc-chhhhhhhcCC
Q 046683 239 NLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG-NISQALGIYHN 317 (329)
Q Consensus 239 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~ 317 (329)
.+++|+.|++++|+++. .......+ .+|+.|+++.|+++ .+|..++.++.|+.|++.+|+++- .+|..++.+..
T Consensus 243 ~l~~LrrLNLS~N~ite-L~~~~~~W---~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITE-LNMTEGEW---ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred hhhhhheeccCcCceee-eeccHHHH---hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 88888888888888873 33333323 67888888888887 788888888888888888887764 57778888888
Q ss_pred CcEEEcCCccc
Q 046683 318 LTFIDLSRNNF 328 (329)
Q Consensus 318 L~~L~l~~n~~ 328 (329)
|+.+...+|.+
T Consensus 318 Levf~aanN~L 328 (1255)
T KOG0444|consen 318 LEVFHAANNKL 328 (1255)
T ss_pred hHHHHhhcccc
Confidence 88887777764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.8e-26 Score=199.40 Aligned_cols=292 Identities=26% Similarity=0.361 Sum_probs=243.3
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCC-CCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFG-IIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
++.||++..|+++ .+.. .+..+|.|+.+.++.|++.. .++..+..+..|+.|++++|++. ..|..+.+..++-+|+
T Consensus 56 kLEHLs~~HN~L~-~vhG-ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLI-SVHG-ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhhH-hhhh-hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 4667777777665 2333 56778888888888887653 36667778999999999999998 8899999999999999
Q ss_pred eecCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCccc-C
Q 046683 105 LHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLL-Y 182 (329)
Q Consensus 105 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~ 182 (329)
+++|.+...+.. +.++.-|-+|++++|.+. ..|..++.+..|++|.+++|.+.......+..+.+|+.|.+++.+- .
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 999999877664 677888999999999987 6777788999999999999998766666777788899999988743 2
Q ss_pred CCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccc
Q 046683 183 GSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLG 262 (329)
Q Consensus 183 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 262 (329)
+-+|..+..+.+|..++++.|.+. ..|+.+-.+++|++|++++|.++ ++........+|++|+++.|+++ ..|..+
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av- 287 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV- 287 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH-
Confidence 356677788899999999999887 67888888999999999999998 55556667789999999999998 555544
Q ss_pred ccccCCCceEEeccCCccc-ccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 263 NICRGGALQYFGVSENHFQ-GTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 263 ~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
++++.|+.|-..+|+++ +-+|.-+..+..|+.+...+|.+. .+|+.++.|..|+.|.|+.|++
T Consensus 288 --cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 288 --CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred --hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 56688999989999876 356777888899999999999998 9999999999999999999985
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.8e-25 Score=184.53 Aligned_cols=292 Identities=28% Similarity=0.312 Sum_probs=196.1
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCccc-ccCCCccEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEI-FLLTHLKFL 103 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L 103 (329)
+.+++++...|.++ .+|+ .++.+..|+.|+++.|++...+ .|.+|..|+.|.++.|+|. .+|++. ..++++.+|
T Consensus 183 ~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHhcccchhhhh-cCCh-hhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceee
Confidence 45677777777665 6666 7778888888888888776433 4667777777777766666 555543 367777777
Q ss_pred EeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceeccc--------------------CCc
Q 046683 104 ILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGS--------------------IPP 163 (329)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------------~~~ 163 (329)
++++|++...+..+..+.+|.+|++++|.++ ..|..++++ .|+.|.+.||.+..+ ..+
T Consensus 258 DLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 258 DLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred eccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 7777777766666677777777777777666 556666666 666666666654200 000
Q ss_pred ---------------------cccCCCCccEEecCCcccCCCCCcCcC--CCCCccEEEccCCcCC--------------
Q 046683 164 ---------------------SMGNLSNLNRLFLYDNLLYGSIPPNVG--NLKSLLVLQLDENQLS-------------- 206 (329)
Q Consensus 164 ---------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~-------------- 206 (329)
......+.+.|.+++-+++.+..+.|. .-.-+..+++++|.+.
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 000111344444444444422111111 1112444455554433
Q ss_pred ---------CCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccC
Q 046683 207 ---------GCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSE 277 (329)
Q Consensus 207 ---------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~ 277 (329)
++.+..++.+++|..|++++|.+. ..|..+..+..|+.|+++.|.+. ..|.++..+ ..++.+-.++
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l---q~lEtllas~ 490 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL---QTLETLLASN 490 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH---HHHHHHHhcc
Confidence 345555667889999999999887 67777778888999999999886 556555433 5667677788
Q ss_pred CcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 278 NHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 278 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
|++....+.-+.++.+|.+|++.+|.+. .+|..++++.+|+.|+++||+|+
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8998665666889999999999999999 78889999999999999999985
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1e-20 Score=186.50 Aligned_cols=284 Identities=22% Similarity=0.209 Sum_probs=162.6
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
.++.|.+.++.+. .+|. .+ ...+|+.|+++++.+... +..+..+++|+.|+++++......| .+..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEKL-WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccccc-ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 4666666666553 4444 33 345666666666665532 3344566666666666554332333 3555666666666
Q ss_pred ecCcC-CCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC
Q 046683 106 HSNKL-NGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 106 ~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
++|.. ...+..+..+++|+.|++++|......|..+ .+++|+.|++++|.....+|.. .++|++|.++++.+..
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~- 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE- 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-
Confidence 66543 2233345566666666666653332333333 4556666666655432222221 2345555555544331
Q ss_pred CCcC------------------------------cCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCC
Q 046683 185 IPPN------------------------------VGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIP 234 (329)
Q Consensus 185 ~~~~------------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 234 (329)
.+.. ....++|+.|++++|......|..++.+++|+.|++++|...+..|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 1111 1123466777777766555566667777777777777765433444
Q ss_pred ccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhh
Q 046683 235 REIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGI 314 (329)
Q Consensus 235 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 314 (329)
... .+++|++|++++|......+.. ..++++|++++|.+. .+|..+..+++|+.|++.+|+--..++..+..
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 443 5677777777776543232221 256777888877776 56667777888888888886444456666777
Q ss_pred cCCCcEEEcCCcc
Q 046683 315 YHNLTFIDLSRNN 327 (329)
Q Consensus 315 ~~~L~~L~l~~n~ 327 (329)
++.|+.+++++|.
T Consensus 892 L~~L~~L~l~~C~ 904 (1153)
T PLN03210 892 LKHLETVDFSDCG 904 (1153)
T ss_pred ccCCCeeecCCCc
Confidence 7888888887774
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=5e-20 Score=181.68 Aligned_cols=267 Identities=24% Similarity=0.288 Sum_probs=186.9
Q ss_pred ccccCC-ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCc
Q 046683 45 SFSLFP-HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNL 123 (329)
Q Consensus 45 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 123 (329)
.+..+| +|+.|.+.++.+...+ ..+ ...+|+.|+++++++. .++..+..+++|+.|+++++......+.+..+++|
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~lP-~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~L 659 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRCMP-SNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNL 659 (1153)
T ss_pred chhhcCcccEEEEecCCCCCCCC-CcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcc
Confidence 344443 4666666666555332 222 4567888888887776 56666777888888888876544455667778888
Q ss_pred cEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCC
Q 046683 124 VKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDEN 203 (329)
Q Consensus 124 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (329)
+.|++.+|......|..+..+++|+.|++.+|.....+|..+ ++++|+.|.+++|......+. ...+|++|+++++
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n 735 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDET 735 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCC
Confidence 888888876555677778888888888888875444555544 678888888888864433332 2357788888887
Q ss_pred cCCCCCCccc------------------------------cCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCcc
Q 046683 204 QLSGCIPRSF------------------------------GNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQF 253 (329)
Q Consensus 204 ~~~~~~~~~l------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 253 (329)
.+... |..+ ..+++|+.|.+++|......|..+..+++|+.|++++|..
T Consensus 736 ~i~~l-P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 736 AIEEF-PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred ccccc-cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 76532 2111 1125677888888876667788888889999999988764
Q ss_pred CCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcc
Q 046683 254 TGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 254 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 327 (329)
.+..|... .+++|+.|++++|......|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|+
T Consensus 815 L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 815 LETLPTGI----NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred cCeeCCCC----CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 43444332 4578999999988554455543 368899999999998 788999999999999999964
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=7.5e-19 Score=162.63 Aligned_cols=256 Identities=27% Similarity=0.371 Sum_probs=177.8
Q ss_pred eeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEee
Q 046683 27 VINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILH 106 (329)
Q Consensus 27 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 106 (329)
-..|+++++.++ .+|+ .+. ++|+.|.+.+|+++.... ..++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~-~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCc-chh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 456888888887 5666 332 478899999888885432 3578999999998888 55542 4688888888
Q ss_pred cCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCC
Q 046683 107 SNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIP 186 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 186 (329)
+|.+...+. ...+|+.|++++|++.. .|. ..++|+.|++++|++.. +|.. ..+|+.|.+++|.+.. ++
T Consensus 271 ~N~L~~Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 271 SNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred CCchhhhhh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 887765433 23568888888887763 332 24678888998888774 3332 2457778888887763 33
Q ss_pred cCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccccc
Q 046683 187 PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICR 266 (329)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 266 (329)
. ....|+.|++++|.+... |.. .++|+.|.+++|.++. .+.. ..+|+.|++++|++.. .+..
T Consensus 339 ~---lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l------ 400 (788)
T PRK15387 339 T---LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL------ 400 (788)
T ss_pred c---cccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc------
Confidence 2 224788888888888743 322 2567788888887773 3332 2568888888888773 3321
Q ss_pred CCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 267 GGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
.++|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|+|+
T Consensus 401 ~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 401 PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 257888888888876 35543 246777888888887 67788888888888888888875
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=2.4e-22 Score=165.81 Aligned_cols=290 Identities=22% Similarity=0.217 Sum_probs=175.4
Q ss_pred cCCCCceecceeecCC---CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCC-c
Q 046683 9 SKIRPCAWSGISCNDA---GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHA-N 84 (329)
Q Consensus 9 ~~~~~~~~~~~~~~~~---~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~ 84 (329)
+.+..|+-.|..-.+. +..+.|.|..|.|+ .+|+.+|+.+++|++|+|+.|.|+.+.+.+|++++.+..|.+-+ |
T Consensus 48 g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 48 GGIVDCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred CceEEccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 4455555555554432 24667788888776 77877888888888888888888888888888888777665554 7
Q ss_pred ccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceec-----
Q 046683 85 AFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLS----- 158 (329)
Q Consensus 85 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----- 158 (329)
.|++.--..|.++..|+.|.+..+.+.-... .+..++++..|.+..+.+..+....+..+..++++++..+.+-
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 7773333367778888888777766653333 3667778888888888777666667777778887777766521
Q ss_pred -------ccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEE----EccCCcCCCCCCccccCCCCCcEEEccCc
Q 046683 159 -------GSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVL----QLDENQLSGCIPRSFGNLTNLIQLFLSFN 227 (329)
Q Consensus 159 -------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L----~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 227 (329)
...+..++.........+.+.++..+-+..+.. .++.+ .-..+.........|..+++|++|++++|
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 111112222222222222333332222222211 12211 11111122222334666777777777777
Q ss_pred cccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcc
Q 046683 228 NLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNL 304 (329)
Q Consensus 228 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 304 (329)
++++....+|.....++.|.+..|++......+|. ..++|+.|++.+|+|+-..+..|....+|.+|++-.|++
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~---~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ---GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh---ccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 77766666777777777777777777644333333 446777777777777666666666667777777666544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=2.4e-23 Score=172.15 Aligned_cols=263 Identities=32% Similarity=0.424 Sum_probs=153.5
Q ss_pred eeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCC
Q 046683 52 LAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNN 131 (329)
Q Consensus 52 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 131 (329)
++.+.++.|.+.. ..+.+..+..+..+++.+++.. .+|.+++.+..++.++.+++++...+..+...+.+.+++.+++
T Consensus 47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 4555555555442 2234455666666666666555 5566666666666666666666655555666666666666666
Q ss_pred ccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCc
Q 046683 132 SLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPR 211 (329)
Q Consensus 132 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 211 (329)
.+. ..+..+..+..++.++..+|++. ..|+.+..+.++..+.+.++.+.... .....+..|++++...|.+. ..|.
T Consensus 125 ~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~-~~~i~m~~L~~ld~~~N~L~-tlP~ 200 (565)
T KOG0472|consen 125 ELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALP-ENHIAMKRLKHLDCNSNLLE-TLPP 200 (565)
T ss_pred cee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCC-HHHHHHHHHHhcccchhhhh-cCCh
Confidence 554 44555555666666666666665 45556666666666666666655332 22333566666666666555 3344
Q ss_pred cccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccC
Q 046683 212 SFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYC 291 (329)
Q Consensus 212 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 291 (329)
.++.+.+|..|++..|++. +.| .|.+|..|+++.+..|++....... ..+..++..||+.+|++. ..|+.++-+
T Consensus 201 ~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~---~~~L~~l~vLDLRdNklk-e~Pde~clL 274 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH---LKHLNSLLVLDLRDNKLK-EVPDEICLL 274 (565)
T ss_pred hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH---hcccccceeeeccccccc-cCchHHHHh
Confidence 5566666666666666665 333 5566666666666666664221111 123456666666666665 556655666
Q ss_pred CCccEEEecCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 292 TSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 292 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
++|.+|++++|.++ ..|-.++++ .|+.|.+.||++
T Consensus 275 rsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 275 RSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 66666666666666 445556666 666666666654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-20 Score=170.16 Aligned_cols=290 Identities=27% Similarity=0.309 Sum_probs=205.0
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++|+.+.|.++... +-..-.+|++++++.+.+.... +-+..+++|+.+...+|++. ..|..+...++|+.|.
T Consensus 219 ~~l~~L~a~~n~l~~~~---~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLD---VHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred cchheeeeccCcceeec---cccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 45566666666554211 1112236777777777777544 66677777777777777775 6677777777777777
Q ss_pred eecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCC-CcEEEccCceecccCCccccCCCCccEEecCCcccCC
Q 046683 105 LHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKS-LSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 105 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
+..|.++-.++....+..|++|++..|.+....+..+..... ++.++.+.+++.......-...+.|+.|.+.+|.+.+
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 777777777777777777888888777776333322322222 4555555555542221222345678889999999988
Q ss_pred CCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccc
Q 046683 184 SIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGN 263 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 263 (329)
.....+....+|+.|+++.|.+.++....+.++..|++|.+++|+++ .++..++.++.|++|...+|++. .+| .
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP----e 447 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP----E 447 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech----h
Confidence 87778888899999999999998777778888899999999999998 66788889999999999999887 444 2
Q ss_pred cccCCCceEEeccCCccccc-CCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCc
Q 046683 264 ICRGGALQYFGVSENHFQGT-IPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRN 326 (329)
Q Consensus 264 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 326 (329)
+...++|+.+|++.|++... ++..... ++|++|+++||.-....-..+..++++...+++-+
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 34568999999999988753 3333333 89999999999765566677777777777776654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=1.4e-17 Score=154.36 Aligned_cols=246 Identities=27% Similarity=0.320 Sum_probs=190.5
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
++++.|++.+|.++ .+|. ..++|++|++++|+++... . ..++|+.|++++|.+. .+|.. +..|+.|+
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLT-HLPAL---PSGLCKLW 288 (788)
T ss_pred cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCccc-C---cccccceeeccCCchh-hhhhc---hhhcCEEE
Confidence 36899999999987 5665 2589999999999988653 2 2478999999999887 55543 36788999
Q ss_pred eecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC
Q 046683 105 LHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 105 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
+++|.+...+. ..++|+.|++++|.+.. .+.. ...|+.|.+.+|+++. +|.. ..+|+.|++++|.+..
T Consensus 289 Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 289 IFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS- 356 (788)
T ss_pred CcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCC-
Confidence 99998886543 35789999999998874 3332 2468889999998874 4432 3579999999999874
Q ss_pred CCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccc
Q 046683 185 IPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNI 264 (329)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 264 (329)
++. ..++|+.|++++|.+.. ++.. ..+|+.|++++|.+++ .+.. .++|+.|++++|++.. .+..
T Consensus 357 LP~---lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---- 420 (788)
T PRK15387 357 LPT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---- 420 (788)
T ss_pred CCC---CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc----
Confidence 443 23578899999998884 3432 3579999999999984 4432 3689999999999974 3432
Q ss_pred ccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhh
Q 046683 265 CRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGI 314 (329)
Q Consensus 265 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 314 (329)
..+|+.|++++|++. .+|..+..++.|+.|++++|++++..+..+..
T Consensus 421 --~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 421 --PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred --hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 257889999999998 78888899999999999999999988887744
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=5.4e-21 Score=157.88 Aligned_cols=290 Identities=21% Similarity=0.237 Sum_probs=211.3
Q ss_pred EEeecCCCCcCccCCcccccCC-ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeec
Q 046683 29 NISLTNTGLSGTLHDFSFSLFP-HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHS 107 (329)
Q Consensus 29 ~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 107 (329)
.++.++..++ ++|. ++| ....+.|..|.|+.+++.+|+.+++||.|+|++|+|+.+.|.+|..++.+..|.+.+
T Consensus 50 ~VdCr~~GL~-eVP~----~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPA----NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcc----cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 3455555554 4443 334 678899999999999999999999999999999999989999999999998888876
Q ss_pred -CcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCC
Q 046683 108 -NKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSI 185 (329)
Q Consensus 108 -~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 185 (329)
++++.... .+..+..++.|.+.-+.+..+....+.+++++..|.+.+|.+..+....+..+..++.+.+.-+.+...-
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 88887665 3788889999999888888778888999999999999999887655557777888888877766532110
Q ss_pred ------------CcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEE---EccCccccCCCC-ccccCCCcccEEEcc
Q 046683 186 ------------PPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQL---FLSFNNLSGSIP-REIGNLRSLVQLALD 249 (329)
Q Consensus 186 ------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L---~l~~~~~~~~~~-~~~~~~~~L~~L~l~ 249 (329)
+..++...-.....+....+....+..|. .+++.+ ..+.+..-...| ..|..+++|++|+++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFL--CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhh--hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 00011111111111222222111111111 112222 112232222233 468899999999999
Q ss_pred CCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 250 QNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 250 ~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
+|+++.....+|. ....+++|.+..|++.......|.++.+|+.|++.+|+|+...|.+|..+..|.+|++-.|++
T Consensus 283 nN~i~~i~~~aFe---~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 283 NNKITRIEDGAFE---GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CCccchhhhhhhc---chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 9999977777776 447899999999999866677889999999999999999999999999999999999998876
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=6.3e-20 Score=157.99 Aligned_cols=280 Identities=22% Similarity=0.207 Sum_probs=161.6
Q ss_pred EEeecCCCCcCccCCcccccCCceeEEeecCCccCCC----CchhcCCCCCCcEEecCCccccc------ccCcccccCC
Q 046683 29 NISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGI----IPPQIGNLSKLQLLSLHANAFSG------KIPCEIFLLT 98 (329)
Q Consensus 29 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~------~~~~~~~~~~ 98 (329)
+|+|.++.+.+.--...+..+++|+.++++++.++.. +...+...++++.++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777776332233567777788888888877532 23344566778888888776551 1223455566
Q ss_pred CccEEEeecCcCCCCCC-CCCCC---CCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCC-CCccE
Q 046683 99 HLKFLILHSNKLNGSIP-PLGNL---NNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNL-SNLNR 173 (329)
Q Consensus 99 ~L~~L~l~~~~~~~~~~-~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~ 173 (329)
+|+.|+++++.+....+ .+..+ ++|++|++++|.+..... ......+..+ ++|++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--------------------~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--------------------RLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--------------------HHHHHHHHhCCCCceE
Confidence 77777777666543211 11111 335555555544331000 0111222333 55666
Q ss_pred EecCCcccCCC----CCcCcCCCCCccEEEccCCcCCCC----CCccccCCCCCcEEEccCccccCC----CCccccCCC
Q 046683 174 LFLYDNLLYGS----IPPNVGNLKSLLVLQLDENQLSGC----IPRSFGNLTNLIQLFLSFNNLSGS----IPREIGNLR 241 (329)
Q Consensus 174 L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~ 241 (329)
|++++|.+... ....+..+++|++|++++|.+.+. .+..+...++|+.|++++|.+++. ....+..++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 66666555421 112234455677777777666532 112233446777788877776532 223455677
Q ss_pred cccEEEccCCccCCCCCCccccc--ccCCCceEEeccCCcccc----cCCcccccCCCccEEEecCCccccc----hhhh
Q 046683 242 SLVQLALDQNQFTGFLPPSLGNI--CRGGALQYFGVSENHFQG----TIPKSLKYCTSLFRVRVDGNNLTGN----ISQA 311 (329)
Q Consensus 242 ~L~~L~l~~~~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~ 311 (329)
+|++|++++|++.+.....+... .....|+.|++++|.+++ .+...+..+++|+.+++++|.+++. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 88888888888764222221111 023688999999888763 2334456678999999999999875 4444
Q ss_pred hhhc-CCCcEEEcCCccc
Q 046683 312 LGIY-HNLTFIDLSRNNF 328 (329)
Q Consensus 312 ~~~~-~~L~~L~l~~n~~ 328 (329)
+... +.++++++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4455 6899999998875
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=2.1e-17 Score=153.82 Aligned_cols=245 Identities=24% Similarity=0.350 Sum_probs=103.6
Q ss_pred eeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEee
Q 046683 27 VINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILH 106 (329)
Q Consensus 27 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 106 (329)
.+.|+++++.++ .+|. .+ .+.|+.|++++|.++...... .++|++|++++|.++ .+|..+ .++|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPA-CI--PEQITTLILDNNELKSLPENL---QGNIKTLYANSNQLT-SIPATL--PDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCCccc-cCChhh--hccccEEECc
Confidence 344555555444 3333 11 124555555555555332211 134555555555544 333322 2345555555
Q ss_pred cCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCC
Q 046683 107 SNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIP 186 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 186 (329)
+|.+...+..+. .+|+.|++++|.+. ..|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|.+.. .+
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc-CC
Confidence 555443322221 24555555555444 2222221 245555555555442 22222 1244555555554442 22
Q ss_pred cCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccccc
Q 046683 187 PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICR 266 (329)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 266 (329)
..+ .++|+.|++++|.++. ++..+. ++|+.|++++|.++ ..+..+ .+.|+.|++++|++.. .+..+.
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~---- 387 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP---- 387 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH----
Confidence 211 1345555555555442 222222 35555555555544 222222 1345555555555542 222221
Q ss_pred CCCceEEeccCCcccccCCccc----ccCCCccEEEecCCccc
Q 046683 267 GGALQYFGVSENHFQGTIPKSL----KYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~l~ 305 (329)
..|+.|++++|++. .+|..+ ..++.+..+++.+|++.
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 23555555555544 223222 22344455555555554
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=8.5e-20 Score=165.41 Aligned_cols=289 Identities=27% Similarity=0.307 Sum_probs=188.4
Q ss_pred CeeE-EeecCCCCcCccCCcccccCCceeEEeecCCccCCCCch-----h-------------cCCCCCCcEEecCCccc
Q 046683 26 RVIN-ISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPP-----Q-------------IGNLSKLQLLSLHANAF 86 (329)
Q Consensus 26 ~l~~-l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~-------------~~~l~~L~~L~l~~~~i 86 (329)
.+++ +++..+.++ . ..+..+++|+.+....+.+...... + -..-.+|++++++.+++
T Consensus 178 ~l~~~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l 253 (1081)
T KOG0618|consen 178 NLTHQLDLRYNEME-V---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL 253 (1081)
T ss_pred hhheeeecccchhh-h---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh
Confidence 3444 777777665 2 1456666666666666554321100 0 01123566666666665
Q ss_pred ccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCcccc
Q 046683 87 SGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMG 166 (329)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 166 (329)
. .+|.++..+.+|+.++..+|.+...+..+....+|+++....|.+. -.+.....++.|++|++..|++....+..+.
T Consensus 254 ~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 254 S-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred h-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHh
Confidence 5 4455666666666666666666555555566666666666666655 3444555667777777777776633222222
Q ss_pred CCC-CccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccE
Q 046683 167 NLS-NLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQ 245 (329)
Q Consensus 167 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 245 (329)
... .++.+..+.+.+.......=...+.|+.|.+.+|.+++.--..+..++.|+.|.+++|.+.......+.+++.|+.
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence 222 2555555555554221111123467888889999888665556778889999999999998677778889999999
Q ss_pred EEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccc-hhhhhhhcCCCcEEEcC
Q 046683 246 LALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGN-ISQALGIYHNLTFIDLS 324 (329)
Q Consensus 246 L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~ 324 (329)
|+++||++. ..+..+ ..+.+|++|...+|++. ..| .+..++.|+.+|++.|.++.. ++..... ++|++||++
T Consensus 412 L~LSGNkL~-~Lp~tv---a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTV---ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred Hhcccchhh-hhhHHH---HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeecc
Confidence 999999987 344444 35688999998888886 667 668889999999999999864 3333333 899999999
Q ss_pred Ccc
Q 046683 325 RNN 327 (329)
Q Consensus 325 ~n~ 327 (329)
||.
T Consensus 485 GN~ 487 (1081)
T KOG0618|consen 485 GNT 487 (1081)
T ss_pred CCc
Confidence 995
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=5e-17 Score=151.32 Aligned_cols=246 Identities=25% Similarity=0.359 Sum_probs=181.6
Q ss_pred ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccC
Q 046683 51 HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLN 130 (329)
Q Consensus 51 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 130 (329)
+.+.|++++..++..+ ..+ .++|+.|++++|.++ .+|..+ ..+|+.|++++|.+...+..+ .++|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELK-SLPENL--QGNIKTLYANSNQLTSIPATL--PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCccccCChhh--hccccEEECcC
Confidence 5678999888877543 323 257999999999988 666654 368999999999887654433 35799999999
Q ss_pred CccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCC
Q 046683 131 NSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIP 210 (329)
Q Consensus 131 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 210 (329)
|.+. .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.+.. .+..+. +.|+.|++++|.+.. .+
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence 9887 4444443 47999999999887 4565543 589999999998874 343332 478899999998874 34
Q ss_pred ccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCccccc
Q 046683 211 RSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKY 290 (329)
Q Consensus 211 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 290 (329)
..+. ++|+.|.+++|.++. .+..+ +++|+.|++++|++.. .+..+. +.|+.|++++|.+. .+|..+.
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~lp-----~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPETLP-----PTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred cccc--ccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChhhc-----CCcCEEECCCCcCC-CCCHhHH-
Confidence 3333 689999999999884 45444 2789999999999873 443332 68999999999887 5565544
Q ss_pred CCCccEEEecCCccccchhh----hhhhcCCCcEEEcCCcccC
Q 046683 291 CTSLFRVRVDGNNLTGNISQ----ALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 291 ~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~n~~~ 329 (329)
..|+.|++++|++. .+|. ....++.+..|++.+|+|+
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 47899999999988 4444 3445588899999999875
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=8.7e-20 Score=157.12 Aligned_cols=180 Identities=28% Similarity=0.268 Sum_probs=109.8
Q ss_pred CeeEEeecCCCCcCc----cCCcccccCCceeEEeecCCccCC------CCchhcCCCCCCcEEecCCcccccccCcccc
Q 046683 26 RVINISLTNTGLSGT----LHDFSFSLFPHLAYLDLSFNELFG------IIPPQIGNLSKLQLLSLHANAFSGKIPCEIF 95 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 95 (329)
.++.++++++.+++. ++. .+...+.+++++++++.+.. .....+..+++|+.|+++++.+....+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 489999999988532 333 46677889999999987662 1234566789999999999988755555555
Q ss_pred cCCC---ccEEEeecCcCCCCCC-----CCCCC-CCccEEEccCCccccC----CCcccCCCCCCcEEEccCceeccc--
Q 046683 96 LLTH---LKFLILHSNKLNGSIP-----PLGNL-NNLVKLFLLNNSLSGS----IPPDIGNLKSLSELDLSINQLSGS-- 160 (329)
Q Consensus 96 ~~~~---L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-- 160 (329)
.+.. |+.|++++|.+..... .+..+ ++|+.|++++|.+... ....+..+++|++|++.+|.+.+.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4444 9999999998763111 23445 7788888887776521 222344555666666666655421
Q ss_pred --CCccccCCCCccEEecCCcccCCCC----CcCcCCCCCccEEEccCCcCC
Q 046683 161 --IPPSMGNLSNLNRLFLYDNLLYGSI----PPNVGNLKSLLVLQLDENQLS 206 (329)
Q Consensus 161 --~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 206 (329)
.+..+...++|++|++++|.+.+.. ...+..+++|++|++++|.+.
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 1222333445666666555543211 112233444555555544443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=4.3e-17 Score=120.31 Aligned_cols=153 Identities=32% Similarity=0.506 Sum_probs=76.9
Q ss_pred CCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEcc
Q 046683 74 SKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLS 153 (329)
Q Consensus 74 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 153 (329)
.+++.|.++++.++ ..|..+..+.+|++|++++++++..+..++++|+|+.|.++-+.+. ..|..|+.+|.|+.|+++
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 34444444444444 3344444444444444444444444444444444444444444433 445555555555555555
Q ss_pred Cceec-ccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCcccc
Q 046683 154 INQLS-GSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLS 230 (329)
Q Consensus 154 ~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (329)
.|.+. ..+|..|.-+..|+.|.+++|.+. ..+..++++++|+.|.+..|.+. ..|..++.++.|++|.+.+|.++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 54433 234445555555555555555553 44555555555665555555554 23444555556666666666555
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-16 Score=117.33 Aligned_cols=161 Identities=33% Similarity=0.483 Sum_probs=136.7
Q ss_pred cccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccE
Q 046683 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVK 125 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 125 (329)
+-++.++++|.++.++++.. +..++.+.+|+.|++.++++. .+|..+..+++|+.|+++.+.+...+..+..+|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 34567889999999998854 455789999999999999998 8899999999999999999998888888999999999
Q ss_pred EEccCCccc-cCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCc
Q 046683 126 LFLLNNSLS-GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQ 204 (329)
Q Consensus 126 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (329)
|+++++.+. ...|..|-.+..|+.|++++|.+. .+|..++++.+|+.|.+.+|.+. ..+..++.+..|++|++.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 999988775 346777878888999999999887 78888999999999999998876 567778888999999999998
Q ss_pred CCCCCC
Q 046683 205 LSGCIP 210 (329)
Q Consensus 205 ~~~~~~ 210 (329)
++...|
T Consensus 185 l~vlpp 190 (264)
T KOG0617|consen 185 LTVLPP 190 (264)
T ss_pred eeecCh
Confidence 874433
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=4.9e-13 Score=109.62 Aligned_cols=248 Identities=17% Similarity=0.176 Sum_probs=126.9
Q ss_pred ccccCCceeEEeecCCccCCCC----chhcCCCCCCcEEecCCccccc----c-------cCcccccCCCccEEEeecCc
Q 046683 45 SFSLFPHLAYLDLSFNELFGII----PPQIGNLSKLQLLSLHANAFSG----K-------IPCEIFLLTHLKFLILHSNK 109 (329)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~i~~----~-------~~~~~~~~~~L~~L~l~~~~ 109 (329)
....+..++.+++++|.+-... ...+.+.++|+..+++.. +++ . +..++..+++|++++||+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455667788888888766442 233456677777777653 221 1 12233345566666666665
Q ss_pred CCCCCCC-----CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC
Q 046683 110 LNGSIPP-----LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 110 ~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
+-..... +.++..|++|.+.+|++.......+.. .|.++. .......-+.|+.+....|++-+.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 4322221 344555555555555443211111110 011111 111223346677777777666532
Q ss_pred C----CcCcCCCCCccEEEccCCcCCCCC----CccccCCCCCcEEEccCccccC----CCCccccCCCcccEEEccCCc
Q 046683 185 I----PPNVGNLKSLLVLQLDENQLSGCI----PRSFGNLTNLIQLFLSFNNLSG----SIPREIGNLRSLVQLALDQNQ 252 (329)
Q Consensus 185 ~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~ 252 (329)
. ...+..++.|+.+.+..|.+.... ...+..++.|+.|++.+|.++. .+...+..++.|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 1 223345567777777766665332 2335566777777777776652 223344556667777777776
Q ss_pred cCCCCCCcccc--cccCCCceEEeccCCcccc----cCCcccccCCCccEEEecCCcc
Q 046683 253 FTGFLPPSLGN--ICRGGALQYFGVSENHFQG----TIPKSLKYCTSLFRVRVDGNNL 304 (329)
Q Consensus 253 l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l 304 (329)
+.......+.. -...++|+.+.+.+|.++. .+...+...+.|..|++++|.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 65433222211 0124566666666666653 1122233456666666666666
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-12 Score=110.79 Aligned_cols=210 Identities=24% Similarity=0.158 Sum_probs=135.6
Q ss_pred cccCCceeEEeecCCccCCCCc-hhcCCCCCCcEEecCCccccc--ccCcccccCCCccEEEeecCcCCCCCCC--CCCC
Q 046683 46 FSLFPHLAYLDLSFNELFGIIP-PQIGNLSKLQLLSLHANAFSG--KIPCEIFLLTHLKFLILHSNKLNGSIPP--LGNL 120 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~ 120 (329)
-+++++|+.+.++++.+..... ...+.|++++.|++++|-+.. ........+|+|+.|+++.|.+...... -..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3567778888888877654322 355678888888888876552 2223445688888888888876533222 2367
Q ss_pred CCccEEEccCCccccC-CCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC-CCcCcCCCCCccEE
Q 046683 121 NNLVKLFLLNNSLSGS-IPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS-IPPNVGNLKSLLVL 198 (329)
Q Consensus 121 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 198 (329)
++|+.|.++.|++... +......+|.|+.|++.+|............+..|+.|++++|.+.+. ....++.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7888888888887632 334456778888888888742223333334466788888888866532 22345677888888
Q ss_pred EccCCcCCCCC-Ccc-----ccCCCCCcEEEccCccccC-CCCccccCCCcccEEEccCCccCC
Q 046683 199 QLDENQLSGCI-PRS-----FGNLTNLIQLFLSFNNLSG-SIPREIGNLRSLVQLALDQNQFTG 255 (329)
Q Consensus 199 ~l~~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~ 255 (329)
+++.+.+.+.- +.. ...+++|+.|.+..|++.+ .....+..+++|+.|.+..+.+..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 88888776431 111 2346788888888888742 122344556777888877777753
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=1.9e-12 Score=104.42 Aligned_cols=225 Identities=20% Similarity=0.178 Sum_probs=141.6
Q ss_pred CCCCCCcEEecCCcccc--------cccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccC
Q 046683 71 GNLSKLQLLSLHANAFS--------GKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIG 142 (329)
Q Consensus 71 ~~l~~L~~L~l~~~~i~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 142 (329)
..+..|++|..++..-+ ..+|..+.-+.+|+.+.++.|.-.....-.-.-|.|+++.+....+. ..+..+.
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~-~~~~l~p 257 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ-DVPSLLP 257 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccc-ccccccc
Confidence 34566777766654211 22344444467788888888765543333344577888877765543 1111111
Q ss_pred CCCCCcEEEcc-CceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcE
Q 046683 143 NLKSLSELDLS-INQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQ 221 (329)
Q Consensus 143 ~~~~L~~L~l~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 221 (329)
.+.+...--. ..-..+.....+-.|..|+++++++|.++ .+.+.+.-.|.++.|+++.|.+... ..+..+++|+.
T Consensus 258 -e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~ 333 (490)
T KOG1259|consen 258 -ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL 333 (490)
T ss_pred -hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceE
Confidence 0111100000 00011111223334678899999999887 4455667788999999999988733 33777889999
Q ss_pred EEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCccccc-CCcccccCCCccEEEec
Q 046683 222 LFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGT-IPKSLKYCTSLFRVRVD 300 (329)
Q Consensus 222 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~ 300 (329)
|++++|.++ ....+=..+.++++|.+++|.+. .+..+.++-+|.+||+++|++... ....+.++|.|+++.+.
T Consensus 334 LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-----~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 334 LDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-----TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred eecccchhH-hhhhhHhhhcCEeeeehhhhhHh-----hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 999999887 44455557788999999998875 223445667889999999988642 23456788999999999
Q ss_pred CCcccc
Q 046683 301 GNNLTG 306 (329)
Q Consensus 301 ~~~l~~ 306 (329)
+|++.+
T Consensus 408 ~NPl~~ 413 (490)
T KOG1259|consen 408 GNPLAG 413 (490)
T ss_pred CCCccc
Confidence 998875
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=2.5e-12 Score=105.49 Aligned_cols=237 Identities=19% Similarity=0.197 Sum_probs=170.8
Q ss_pred cccccCCCccEEEeecCcCCCC-----CCCCCCCCCccEEEccCCc---cccCCC-------cccCCCCCCcEEEccCce
Q 046683 92 CEIFLLTHLKFLILHSNKLNGS-----IPPLGNLNNLVKLFLLNNS---LSGSIP-------PDIGNLKSLSELDLSINQ 156 (329)
Q Consensus 92 ~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~---~~~~~~-------~~~~~~~~L~~L~l~~~~ 156 (329)
..+.....++.++++++.+-.. ...+.+.++|+..++++.- .....| .++..+|+|+++++++|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3444578899999999977431 1225666788888887632 112222 345677899999999998
Q ss_pred ecccCCc----cccCCCCccEEecCCcccCCCCC-------------cCcCCCCCccEEEccCCcCCCCCC----ccccC
Q 046683 157 LSGSIPP----SMGNLSNLNRLFLYDNLLYGSIP-------------PNVGNLKSLLVLQLDENQLSGCIP----RSFGN 215 (329)
Q Consensus 157 ~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~ 215 (329)
+....++ .+.++..|++|.+.+|.+..... ...+..+.|+.+...+|.+..... ..|..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 7644333 44668899999999998863222 223556889999999998765433 34667
Q ss_pred CCCCcEEEccCccccCC----CCccccCCCcccEEEccCCccCCCCCCccc-ccccCCCceEEeccCCcccccCCccc--
Q 046683 216 LTNLIQLFLSFNNLSGS----IPREIGNLRSLVQLALDQNQFTGFLPPSLG-NICRGGALQYFGVSENHFQGTIPKSL-- 288 (329)
Q Consensus 216 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~-- 288 (329)
.+.|+.+.+..|.+... ....+..+++|+.|++..|.++......+. .++.+++|+.+.+++|.+.......+
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 78999999999987532 224667899999999999998755443332 24455789999999998876544433
Q ss_pred ---ccCCCccEEEecCCccccc----hhhhhhhcCCCcEEEcCCccc
Q 046683 289 ---KYCTSLFRVRVDGNNLTGN----ISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 289 ---~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~ 328 (329)
...|+|+.+.+.+|.++.. +..++...+.|+.|+|++|++
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3478999999999988763 445566788999999999987
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.6e-12 Score=106.41 Aligned_cols=207 Identities=24% Similarity=0.211 Sum_probs=114.1
Q ss_pred CCCCCcEEecCCcccccccC--cccccCCCccEEEeecCcCCCCCCC---CCCCCCccEEEccCCccccCCCc-ccCCCC
Q 046683 72 NLSKLQLLSLHANAFSGKIP--CEIFLLTHLKFLILHSNKLNGSIPP---LGNLNNLVKLFLLNNSLSGSIPP-DIGNLK 145 (329)
Q Consensus 72 ~l~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 145 (329)
++.+|+.+.++++.+. ..+ .....|++++.|+++.|-+....+. ...+|+|+.|.++.|.+...... .-..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4566777777777655 222 2455677777777777755433222 45677777777777765422111 112445
Q ss_pred CCcEEEccCceeccc-CCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCC-CccccCCCCCcEEE
Q 046683 146 SLSELDLSINQLSGS-IPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCI-PRSFGNLTNLIQLF 223 (329)
Q Consensus 146 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~ 223 (329)
.|+.|.+++|.++-. ....+..+|+|+.|.+..|...........-++.|++|++++|.+.++. ......+|.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 667777777765421 1122345677777777766322122222334456777777777665332 12345567777777
Q ss_pred ccCccccCCCCcc------ccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCccc
Q 046683 224 LSFNNLSGSIPRE------IGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQ 281 (329)
Q Consensus 224 l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~ 281 (329)
++.+.+.+..... ...+++|++|++..|++.++ ..+..+...++++.|.+..+.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w--~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW--RSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccc--cccchhhccchhhhhhccccccc
Confidence 7777665322211 23556777777777776533 12233334455666665555443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2e-10 Score=88.16 Aligned_cols=127 Identities=24% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCCCCccEEEccCCcCCCCCCcccc-CCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCC
Q 046683 190 GNLKSLLVLQLDENQLSGCIPRSFG-NLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGG 268 (329)
Q Consensus 190 ~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~ 268 (329)
.++..+++|++.+|.+... +.+. .+.+|+.|++++|.++.. ..+..++.|+.|++++|.+.... ..+. ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~--~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLD--KNLP 88 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHH--HH-T
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchH--HhCC
Confidence 4556789999999998742 3444 468999999999999843 35778899999999999998432 2221 2458
Q ss_pred CceEEeccCCcccccC-CcccccCCCccEEEecCCcccc---chhhhhhhcCCCcEEEc
Q 046683 269 ALQYFGVSENHFQGTI-PKSLKYCTSLFRVRVDGNNLTG---NISQALGIYHNLTFIDL 323 (329)
Q Consensus 269 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~~~L~~L~l 323 (329)
+|+.|.+++|++.+.. ...+..+++|+.|++.+|++.. .....+..+|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999999999997532 3567789999999999999875 35567788999999874
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=3.3e-10 Score=87.00 Aligned_cols=130 Identities=25% Similarity=0.243 Sum_probs=52.7
Q ss_pred cccCCCCccEEecCCcccCCCCCcCcC-CCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccc-cCCC
Q 046683 164 SMGNLSNLNRLFLYDNLLYGSIPPNVG-NLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI-GNLR 241 (329)
Q Consensus 164 ~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 241 (329)
.+.++.++++|++.++.+..+ +.++ .+.+|+.|++++|.+... ..+..++.|+.|.+++|.+++. ...+ ..+|
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp 88 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence 344566799999999999853 2354 578999999999999843 3477789999999999999844 3334 4689
Q ss_pred cccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCC---cccccCCCccEEEec
Q 046683 242 SLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIP---KSLKYCTSLFRVRVD 300 (329)
Q Consensus 242 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 300 (329)
+|++|.+++|++... ..+..+..+++|+.|++.+|.+...-. ..+..+|+|+.||-.
T Consensus 89 ~L~~L~L~~N~I~~l--~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDL--NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SC--CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCCh--HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999999999999743 345667788999999999999874321 134578999988643
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=3.9e-10 Score=99.99 Aligned_cols=177 Identities=40% Similarity=0.520 Sum_probs=98.3
Q ss_pred CCCCCCcEEecCCcccccccCcccccCC-CccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcE
Q 046683 71 GNLSKLQLLSLHANAFSGKIPCEIFLLT-HLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSE 149 (329)
Q Consensus 71 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 149 (329)
..++.++.|++.++.++ ..+....... +|+.|+++++.+......+..+++|+.|+++.|.+. ..+......+.|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 34455666666666665 4444444443 666666666666654445566666666666666665 22332335556666
Q ss_pred EEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccc
Q 046683 150 LDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNL 229 (329)
Q Consensus 150 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 229 (329)
++++++++. ..|........|+++.++++... .....+.....+..+.+.++.+.. .+..+..+++++.|++++|.+
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccc
Confidence 666666665 23333333444666666666322 222334555566666666655542 234455556666666666666
Q ss_pred cCCCCccccCCCcccEEEccCCccC
Q 046683 230 SGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 230 ~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
+.... +....+++.|+++++.+.
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccc--ccccCccCEEeccCcccc
Confidence 63222 556666666666666554
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=4.9e-10 Score=99.37 Aligned_cols=198 Identities=35% Similarity=0.456 Sum_probs=135.5
Q ss_pred EEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCC-CCcEEEccCceecccCCccccCCCCccEEecCCcc
Q 046683 102 FLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLK-SLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNL 180 (329)
Q Consensus 102 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 180 (329)
.+....+.+......+.....++.+.+.++.+.. .+......+ +|+.++++++++. ..+..+..++.|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 5677776664455555666788888888888773 344444453 8888888888877 344567788888888888888
Q ss_pred cCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCc
Q 046683 181 LYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPS 260 (329)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 260 (329)
+.+. +......+.|+.+++++|.+.. .+........|+++.++++... ..+..+..+..+..+.+.+|++... +..
T Consensus 175 l~~l-~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~ 250 (394)
T COG4886 175 LSDL-PKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PES 250 (394)
T ss_pred hhhh-hhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cch
Confidence 8743 3333367788888888888874 3333334456888888888543 3555666777788888888877531 222
Q ss_pred ccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhh
Q 046683 261 LGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQ 310 (329)
Q Consensus 261 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 310 (329)
...+..++.|++++|++.+... +....+++.|+++++.+....+.
T Consensus 251 ---~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 251 ---IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ---hccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 2344668888888888874433 67778888888888887755443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=4.9e-11 Score=96.32 Aligned_cols=203 Identities=17% Similarity=0.213 Sum_probs=128.6
Q ss_pred CCCCCCccEEEccCCc--------cccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCC---
Q 046683 117 LGNLNNLVKLFLLNNS--------LSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSI--- 185 (329)
Q Consensus 117 ~~~~~~L~~L~l~~~~--------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--- 185 (329)
+..+.+|.+|.++... +....+..+..+++|+.+.++.+.-..+. .....-|.|..+.+.+..++...
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~~~~l~ 256 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQDVPSLL 256 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccccccccc
Confidence 3445677777766431 11223444555667777777766433221 11122356666666555443210
Q ss_pred Cc--------------------CcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccE
Q 046683 186 PP--------------------NVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQ 245 (329)
Q Consensus 186 ~~--------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 245 (329)
|. ....-+.|+++++++|.++ .+.++..-.|.++.|+++.|.+... ..++.+++|..
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~ 333 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQL 333 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceE
Confidence 00 0111246788899998887 4555566678899999999988733 23678889999
Q ss_pred EEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc-chhhhhhhcCCCcEEEcC
Q 046683 246 LALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG-NISQALGIYHNLTFIDLS 324 (329)
Q Consensus 246 L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~ 324 (329)
|++++|.+..... +- .++-+++.|.++.|.+.+ ..-+..+-+|..|++.+|+|.. +....++++|.|+.+.|.
T Consensus 334 LDLS~N~Ls~~~G-wh---~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 334 LDLSGNLLAECVG-WH---LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred eecccchhHhhhh-hH---hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 9999998763321 11 244688888888887742 2234556688899999998876 344678889999999999
Q ss_pred CcccC
Q 046683 325 RNNFY 329 (329)
Q Consensus 325 ~n~~~ 329 (329)
+|+++
T Consensus 408 ~NPl~ 412 (490)
T KOG1259|consen 408 GNPLA 412 (490)
T ss_pred CCCcc
Confidence 99874
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.5e-09 Score=100.95 Aligned_cols=117 Identities=35% Similarity=0.621 Sum_probs=93.8
Q ss_pred eecceeecCCC-----CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccc
Q 046683 15 AWSGISCNDAG-----RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGK 89 (329)
Q Consensus 15 ~~~~~~~~~~~-----~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 89 (329)
.|.|..|...+ .++.|+|+++.+.|.+|. .+..+++|+.|++++|.+.+.++..+..+++|+.|++++|++.+.
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~ 481 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC
Confidence 69999996422 378899999999988887 788999999999999999888888889999999999999999888
Q ss_pred cCcccccCCCccEEEeecCcCCCCCCC-CCC-CCCccEEEccCCc
Q 046683 90 IPCEIFLLTHLKFLILHSNKLNGSIPP-LGN-LNNLVKLFLLNNS 132 (329)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~l~~~~ 132 (329)
.|..+.++++|+.|++++|.+.+..+. +.. ..++..+++.+|.
T Consensus 482 iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 888898999999999999887765443 222 2344555655553
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=4.3e-10 Score=107.13 Aligned_cols=272 Identities=24% Similarity=0.216 Sum_probs=151.4
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCc--cCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNE--LFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKF 102 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 102 (329)
..++++++.++.+. .++. -..+|+|++|-+.++. +.....+.|..++.|+.|++++|.-.+.+|..+..+-+||+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 35677888877765 3322 2345678888888875 55566667888899999999887655688888888889999
Q ss_pred EEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceec--ccCCccccCCCCccEEecCCcc
Q 046683 103 LILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLS--GSIPPSMGNLSNLNRLFLYDNL 180 (329)
Q Consensus 103 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~ 180 (329)
|+++++.+...+..+..+..|++|++..+......+.....+++|++|.+...... ......+..+.+|+.+......
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99988888877778888888888888877654444555666888888887764311 1111222334444444442222
Q ss_pred cCCCCCcCcCCCCCcc----EEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccC------CCcccEEEccC
Q 046683 181 LYGSIPPNVGNLKSLL----VLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGN------LRSLVQLALDQ 250 (329)
Q Consensus 181 ~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~ 250 (329)
. .....+.....|. .+.+..+... .....+..+.+|+.|.+.+|.+.+........ ++++..+.+.+
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 1 0111122222222 2222222111 22334556677788888777765322222111 23334444433
Q ss_pred CccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc
Q 046683 251 NQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG 306 (329)
Q Consensus 251 ~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 306 (329)
+......... .-.++|+.|.+..+...............++.+.+..+.+.+
T Consensus 757 ~~~~r~l~~~----~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 757 CHMLRDLTWL----LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred cccccccchh----hccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 3222111100 122677777777664433333333333444444444444443
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=5.3e-10 Score=70.69 Aligned_cols=61 Identities=30% Similarity=0.403 Sum_probs=54.1
Q ss_pred CCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 268 GALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
++|++|++++|++....+..|..+++|+.|++++|++....+.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688899999988866667888999999999999999988888999999999999999986
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=3.2e-11 Score=105.16 Aligned_cols=168 Identities=29% Similarity=0.406 Sum_probs=89.7
Q ss_pred EEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcC
Q 046683 126 LFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQL 205 (329)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (329)
.+++.|.+. .+|..+..|..|+.+.++.|.+- ..|..+.++..|+.++++.|+++ ..+..+.. --|+.|-+++|.+
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-CcceeEEEecCcc
Confidence 344555544 44555555555555555555543 45555556666666666666555 33333222 2455555666655
Q ss_pred CCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCC
Q 046683 206 SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIP 285 (329)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~ 285 (329)
+ ..+..++..+.|..++.+.|.+. ..+..+.++.+|+.|++..|.+.. ++..+.. -.|..||++.|++. .+|
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~----LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS----LPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC----CceeeeecccCcee-ecc
Confidence 5 33444455555666666666554 444455555566666666665542 2222222 24555666666555 555
Q ss_pred cccccCCCccEEEecCCccc
Q 046683 286 KSLKYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~l~ 305 (329)
..|.+++.|+.|-+.+|++.
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 56666666666666666665
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=9.1e-10 Score=104.98 Aligned_cols=228 Identities=21% Similarity=0.181 Sum_probs=132.0
Q ss_pred CCeeEEeecCCCC-cCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEE
Q 046683 25 GRVINISLTNTGL-SGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFL 103 (329)
Q Consensus 25 ~~l~~l~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 103 (329)
+.++.|-+..+.- -..++...|..+|.|+.|++++|.--...|..++++-+||+|+++++.+. .+|..+.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 3588888887752 22455546899999999999987644567888999999999999999998 899999999999999
Q ss_pred EeecCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceeccc-CCccccCCCCcc----EEecC
Q 046683 104 ILHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGS-IPPSMGNLSNLN----RLFLY 177 (329)
Q Consensus 104 ~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~----~L~l~ 177 (329)
++..+......+. ...+++||+|.+...... .....+.++.+|++|..-....... ....+...+.|. .+.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence 9998765544454 455999999999876522 2223333444444443332222111 001112222222 22222
Q ss_pred CcccCCCCCcCcCCCCCccEEEccCCcCCCCCCcccc-----C-CCCCcEEEccCccccCCCCccccCCCcccEEEccCC
Q 046683 178 DNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFG-----N-LTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251 (329)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 251 (329)
++... .....+..+.+|+.|.+.++.+......... . ++++..+.+.+|..... +.+.-..|+|+.|.+..+
T Consensus 703 ~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 703 GCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-LTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred ccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-cchhhccCcccEEEEecc
Confidence 22222 2223445666777777777665422111111 1 22333333333332211 111223366666666666
Q ss_pred ccCCC
Q 046683 252 QFTGF 256 (329)
Q Consensus 252 ~l~~~ 256 (329)
.....
T Consensus 781 ~~~e~ 785 (889)
T KOG4658|consen 781 RLLED 785 (889)
T ss_pred ccccc
Confidence 55433
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=7.4e-11 Score=102.95 Aligned_cols=191 Identities=33% Similarity=0.451 Sum_probs=136.3
Q ss_pred eEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCc
Q 046683 53 AYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNS 132 (329)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 132 (329)
...+++.|++. +++..++.+..|+.+.+..|.+. ..|.++.++..|.+++++.|+++.++..++.+| |+.|.+++|+
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 45667777766 34455566677777888777777 678888888888888888888887666666654 7888888888
Q ss_pred cccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCcc
Q 046683 133 LSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRS 212 (329)
Q Consensus 133 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 212 (329)
+. ..|..++..++|..|+.+.|.+. ..|..+..+.+|+.|.+..|.+.. .+..+. .-.|..||++.|.+. .+|..
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ecchh
Confidence 77 56666777778888888888776 456667777888888888877763 444444 336777888888887 56677
Q ss_pred ccCCCCCcEEEccCccccCCCCccc---cCCCcccEEEccCCc
Q 046683 213 FGNLTNLIQLFLSFNNLSGSIPREI---GNLRSLVQLALDQNQ 252 (329)
Q Consensus 213 l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~ 252 (329)
|.++..|++|.|.+|.+. ..+..+ +...-.++|+...|+
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 888888888888888887 333222 233456777777774
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=3e-09 Score=67.19 Aligned_cols=58 Identities=38% Similarity=0.518 Sum_probs=27.1
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCc
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN 84 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 84 (329)
++++|++++|.+. .+++..|+.+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444443 344334444444444444444444444444444444444444444
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=8.7e-09 Score=95.99 Aligned_cols=106 Identities=36% Similarity=0.529 Sum_probs=88.0
Q ss_pred CcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEE
Q 046683 219 LIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVR 298 (329)
Q Consensus 219 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 298 (329)
++.|+++++.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|++.+.+|+.+..+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~---~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG---SITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh---CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 67788888888888888888889999999999988877666554 558889999999998888888888899999999
Q ss_pred ecCCccccchhhhhhhc-CCCcEEEcCCcc
Q 046683 299 VDGNNLTGNISQALGIY-HNLTFIDLSRNN 327 (329)
Q Consensus 299 l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~ 327 (329)
+++|.+.+.+|..+... .++..+++.+|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 99999998888887763 466778888775
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.2e-11 Score=96.54 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=71.7
Q ss_pred CcEEEccCceecc-cCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCc-CCCC-CCccccCCCCCcEEE
Q 046683 147 LSELDLSINQLSG-SIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQ-LSGC-IPRSFGNLTNLIQLF 223 (329)
Q Consensus 147 L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~L~ 223 (329)
++++++++..++. .+...++.|.+|+.|.+.+.++.+.+...+++..+|+.++++++. +++. ....+..++.|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4555555444331 122333445555555555555544433334444555555555442 1111 111234445555555
Q ss_pred ccCccccCCCCc-ccc-CCCcccEEEccCCccCCCCCCcccc-cccCCCceEEeccCC-cccccCCcccccCCCccEEEe
Q 046683 224 LSFNNLSGSIPR-EIG-NLRSLVQLALDQNQFTGFLPPSLGN-ICRGGALQYFGVSEN-HFQGTIPKSLKYCTSLFRVRV 299 (329)
Q Consensus 224 l~~~~~~~~~~~-~~~-~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l 299 (329)
+++|.+...... .+. --++|..|+++|+.-.-. ...+.. ...|++|..||+++| .+.......+..++.|++|.+
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh-hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 555544321110 111 113455555555432100 001111 123455555555544 222222223344455555555
Q ss_pred cCCccc-cchhhhhhhcCCCcEEEcCCc
Q 046683 300 DGNNLT-GNISQALGIYHNLTFIDLSRN 326 (329)
Q Consensus 300 ~~~~l~-~~~~~~~~~~~~L~~L~l~~n 326 (329)
+.|... -+..-.+...|.|++||..||
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 555322 112222334445555555443
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.74 E-value=8.4e-11 Score=98.88 Aligned_cols=298 Identities=17% Similarity=0.037 Sum_probs=169.0
Q ss_pred CCeeEEeecCCCCcCccCCcc-cccCCceeEEeecCCc-cCCCCchhc-CCCCCCcEEecCCcc-cccccCc-ccccCCC
Q 046683 25 GRVINISLTNTGLSGTLHDFS-FSLFPHLAYLDLSFNE-LFGIIPPQI-GNLSKLQLLSLHANA-FSGKIPC-EIFLLTH 99 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~-i~~~~~~-~~~~~~~ 99 (329)
+.++.+++.++.-.+.-+-.. -.++|++++|.+.++. +++.....+ .++++|+++++..|. ++....+ ....|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 567777777776544332222 3667888888887774 443322222 467888888887743 3333333 2335788
Q ss_pred ccEEEeecCcCCC---CCCCCCCCCCccEEEccCCcccc--CCCcccCCCCCCcEEEccCce-ecccCC-ccccCCCCcc
Q 046683 100 LKFLILHSNKLNG---SIPPLGNLNNLVKLFLLNNSLSG--SIPPDIGNLKSLSELDLSINQ-LSGSIP-PSMGNLSNLN 172 (329)
Q Consensus 100 L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~l~~~~~L~ 172 (329)
|++++++.|.... .-+....+..++.+...+|.-.. .....-.+++-+..+++..+. +++.-. ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888775321 11224555566666666542110 001111233445555555542 222211 1112356788
Q ss_pred EEecCCcccCC-CCCc-CcCCCCCccEEEccCCcCCCC-CCcccc-CCCCCcEEEccCccccCC--CCccccCCCcccEE
Q 046683 173 RLFLYDNLLYG-SIPP-NVGNLKSLLVLQLDENQLSGC-IPRSFG-NLTNLIQLFLSFNNLSGS--IPREIGNLRSLVQL 246 (329)
Q Consensus 173 ~L~l~~~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~l~-~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L 246 (329)
++..+++...+ ..-. .-.++.+|+.+-+.+|...+. ....++ .++.|+.+++..+..... +...-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 88888774322 1111 125678899998888864322 222333 467899999888865422 23334578899999
Q ss_pred EccCCccCCCC-CCcccc-cccCCCceEEeccCC-cccccCCcccccCCCccEEEecCCcc-ccchhh-hhhhcCCCcEE
Q 046683 247 ALDQNQFTGFL-PPSLGN-ICRGGALQYFGVSEN-HFQGTIPKSLKYCTSLFRVRVDGNNL-TGNISQ-ALGIYHNLTFI 321 (329)
Q Consensus 247 ~l~~~~l~~~~-~~~l~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~-~~~~~~~L~~L 321 (329)
.+++|....+. ...+.. -+....++.+.++++ .+++...+.+..|++|+++++.+++- +.+... .-..+|++++.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 99988654221 222221 134568888888888 45566667788899999999988844 323222 23456776654
Q ss_pred E
Q 046683 322 D 322 (329)
Q Consensus 322 ~ 322 (329)
.
T Consensus 458 a 458 (483)
T KOG4341|consen 458 A 458 (483)
T ss_pred h
Confidence 3
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.2e-09 Score=85.18 Aligned_cols=230 Identities=21% Similarity=0.146 Sum_probs=136.1
Q ss_pred ccCCceeEEeecCCccCCCC-chhc-CCCCCCcEEecCCccccc--ccCcccccCCCccEEEeecCcCCCCCCCCC-CCC
Q 046683 47 SLFPHLAYLDLSFNELFGII-PPQI-GNLSKLQLLSLHANAFSG--KIPCEIFLLTHLKFLILHSNKLNGSIPPLG-NLN 121 (329)
Q Consensus 47 ~~~~~L~~L~l~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~ 121 (329)
.....++.+-+.++.|...- ...| ..+..++.+++.+|+|++ .....+.++|.|++|+++.|.+........ ...
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 33445566667777766431 1222 456788899999988872 334456688999999999988776555543 556
Q ss_pred CccEEEccCCccc-cCCCcccCCCCCCcEEEccCceecc--cCCccccCC-CCccEEecCCcccCCC--CCcCcCCCCCc
Q 046683 122 NLVKLFLLNNSLS-GSIPPDIGNLKSLSELDLSINQLSG--SIPPSMGNL-SNLNRLFLYDNLLYGS--IPPNVGNLKSL 195 (329)
Q Consensus 122 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~-~~L~~L~l~~~~~~~~--~~~~~~~~~~L 195 (329)
+|+.|.+.++++. ......+..+|++++++++.|..-. .-......+ +.+.++....|..... ........|++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 8888888887765 2344556677888888888773211 111111122 2455555555532210 00111234677
Q ss_pred cEEEccCCcCCCCC-CccccCCCCCcEEEccCccccC-CCCccccCCCcccEEEccCCccCCCCCC---cccccccCCCc
Q 046683 196 LVLQLDENQLSGCI-PRSFGNLTNLIQLFLSFNNLSG-SIPREIGNLRSLVQLALDQNQFTGFLPP---SLGNICRGGAL 270 (329)
Q Consensus 196 ~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~~~~L 270 (329)
..+-+..|++.+.. .+....+|.+..|.++.+++.. .....+++++.|+.|+++++++.+.... .+--+..++++
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v 281 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKV 281 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccce
Confidence 77777777765432 2344556677777887777753 2234667788888888888887643221 11113445666
Q ss_pred eEEecc
Q 046683 271 QYFGVS 276 (329)
Q Consensus 271 ~~L~l~ 276 (329)
+.|+-+
T Consensus 282 ~vLNGs 287 (418)
T KOG2982|consen 282 QVLNGS 287 (418)
T ss_pred EEecCc
Confidence 666543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.4e-10 Score=92.27 Aligned_cols=175 Identities=22% Similarity=0.118 Sum_probs=86.4
Q ss_pred ceeEEeecCCccCCCC-chhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC---CCCCCCCccEE
Q 046683 51 HLAYLDLSFNELFGII-PPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP---PLGNLNNLVKL 126 (329)
Q Consensus 51 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L 126 (329)
.|++++++...++... -..++.|.+|+.|.+.+.++.+.....+....+|+.|+++.|.--.... .+.+|..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4566666665554321 1233555666666666666555555555556666666666553211111 14556666666
Q ss_pred EccCCccccC-CCcccCCC-CCCcEEEccCceec---ccCCccccCCCCccEEecCCcc-cCCCCCcCcCCCCCccEEEc
Q 046683 127 FLLNNSLSGS-IPPDIGNL-KSLSELDLSINQLS---GSIPPSMGNLSNLNRLFLYDNL-LYGSIPPNVGNLKSLLVLQL 200 (329)
Q Consensus 127 ~l~~~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 200 (329)
++++|..... +...+.+. ++|..|+++|+.-. .........+|+|..|++++|. +.......+-+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 6666544311 11112222 35555666554311 0111122346667777776663 22222223445666777777
Q ss_pred cCCcCCCCCCc---cccCCCCCcEEEccCc
Q 046683 201 DENQLSGCIPR---SFGNLTNLIQLFLSFN 227 (329)
Q Consensus 201 ~~~~~~~~~~~---~l~~~~~L~~L~l~~~ 227 (329)
+.|..- .|+ .+...|+|.+|++.+|
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 666432 222 2445567777776554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=4e-09 Score=93.91 Aligned_cols=244 Identities=27% Similarity=0.286 Sum_probs=152.1
Q ss_pred cCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEE
Q 046683 48 LFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLF 127 (329)
Q Consensus 48 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 127 (329)
.+..++.+.++.+.+.. ....+..+++|+.+++.++++. .....+..+++|++|++++|.+. ....+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccchhhccchhhhe
Confidence 45666667777777664 2344677788888888888877 32322667888888888888877 445566677788888
Q ss_pred ccCCccccCCCcccCCCCCCcEEEccCceecccCC-ccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCC
Q 046683 128 LLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIP-PSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLS 206 (329)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 206 (329)
+.+|.+... ..+..++.|+.+++++|++....+ . ...+.+++.+.+.++.+.... .+.....+..+++..|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccce
Confidence 888887632 334457788888888888764433 2 467788888888888776332 2333445555566666665
Q ss_pred CCCCccccCCCC--CcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccc--
Q 046683 207 GCIPRSFGNLTN--LIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQG-- 282 (329)
Q Consensus 207 ~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-- 282 (329)
..- .+...+. |+.+.+.++.+.. .+..+..+..+..+++..+++..... ......+..+....+.+..
T Consensus 222 ~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 222 KLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG-----LERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred ecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc-----ccccchHHHhccCcchhcchh
Confidence 221 1222233 7888888887763 22455566777888888877753211 1122334444444554431
Q ss_pred -cCCc-ccccCCCccEEEecCCccccc
Q 046683 283 -TIPK-SLKYCTSLFRVRVDGNNLTGN 307 (329)
Q Consensus 283 -~~~~-~~~~~~~L~~L~l~~~~l~~~ 307 (329)
.... .....+.+..+++.++.+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred hhhccccccccccccccccccCccccc
Confidence 1111 134557777888888877653
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.59 E-value=6.9e-09 Score=92.40 Aligned_cols=107 Identities=33% Similarity=0.301 Sum_probs=45.9
Q ss_pred cccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccE
Q 046683 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVK 125 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 125 (329)
+..+.+|+.|++.++.+.... ..+..+++|++|++++|.|+.. ..+..++.|+.|++.+|.+. ....+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hccCCccchhhhc
Confidence 344444555555555444321 1134445555555555544421 22333444555555555444 2222333445555
Q ss_pred EEccCCccccCCC-cccCCCCCCcEEEccCcee
Q 046683 126 LFLLNNSLSGSIP-PDIGNLKSLSELDLSINQL 157 (329)
Q Consensus 126 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 157 (329)
++++++.+..... . ...+.+++.+.+.++.+
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 5555544442222 1 23444444444444443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.6e-08 Score=81.84 Aligned_cols=212 Identities=24% Similarity=0.128 Sum_probs=137.0
Q ss_pred CCCCCCcEEecCCccccccc--CcccccCCCccEEEeecCcCCCCCC---CCCCCCCccEEEccCCccccCCCcccCCCC
Q 046683 71 GNLSKLQLLSLHANAFSGKI--PCEIFLLTHLKFLILHSNKLNGSIP---PLGNLNNLVKLFLLNNSLSGSIPPDIGNLK 145 (329)
Q Consensus 71 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 145 (329)
...+.++.+.+.++.|.... ...-..++.++.+++.+|.+++... -+..+|+|+.|+++.|.+...+...-....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 34445556777777665222 2222358899999999998876433 378899999999999988744333223456
Q ss_pred CCcEEEccCceecc-cCCccccCCCCccEEecCCcccCCC---CCcCcCCCCCccEEEccCCcCCCC--CCccccCCCCC
Q 046683 146 SLSELDLSINQLSG-SIPPSMGNLSNLNRLFLYDNLLYGS---IPPNVGNLKSLLVLQLDENQLSGC--IPRSFGNLTNL 219 (329)
Q Consensus 146 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L 219 (329)
+|+.|.+.+..+.= .....+..+|.+++|.++.|.+... ....-...+.+.+++..+|...-. ....-..+|++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 89999998876542 2234556789999999998854421 111112335677777777643211 11112245888
Q ss_pred cEEEccCccccC-CCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccC
Q 046683 220 IQLFLSFNNLSG-SIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTI 284 (329)
Q Consensus 220 ~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~ 284 (329)
..+.+..|+++. .....+..+|.+--|++..+++..+. .+..+.++++|..|.++.+.+.+..
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa--svD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA--SVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHH--HHHHHcCCchhheeeccCCcccccc
Confidence 888888888763 33345666677778888888887442 2334556688888888888876543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=2.5e-09 Score=96.28 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=81.3
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEE
Q 046683 194 SLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYF 273 (329)
Q Consensus 194 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L 273 (329)
.|.+.+.+.|.+. ....++.-++.++.|+++.|+++.. ..+..++.|++|++++|.+.. ++..-+ .. ..|..|
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~--~g-c~L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSM--VG-CKLQLL 237 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccch--hh-hhheee
Confidence 4555666666655 4455666667788888888877632 266677888888888887763 222211 12 237788
Q ss_pred eccCCcccccCCcccccCCCccEEEecCCcccc-chhhhhhhcCCCcEEEcCCccc
Q 046683 274 GVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG-NISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
.+++|-++. ..-+.++++|+.|++++|-+.+ .-..-++.+..|+.|.|.||++
T Consensus 238 ~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 888876652 1234667788888888887765 2234466677778888888875
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.30 E-value=8.3e-08 Score=76.87 Aligned_cols=235 Identities=19% Similarity=0.171 Sum_probs=131.3
Q ss_pred cccCCCccEEEeecCcCCCCCC-----CCCCCCCccEEEccCCccc---c-------CCCcccCCCCCCcEEEccCceec
Q 046683 94 IFLLTHLKFLILHSNKLNGSIP-----PLGNLNNLVKLFLLNNSLS---G-------SIPPDIGNLKSLSELDLSINQLS 158 (329)
Q Consensus 94 ~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~ 158 (329)
+..+..+..+++|+|.+..... .+..-.+|+...++.-... + ....++-.||.|+.+++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3347788888888887643221 1344556666666542111 1 12234557788888888887766
Q ss_pred ccCCccc----cCCCCccEEecCCcccCCCCCcCc-------------CCCCCccEEEccCCcCCCCCCc----cccCCC
Q 046683 159 GSIPPSM----GNLSNLNRLFLYDNLLYGSIPPNV-------------GNLKSLLVLQLDENQLSGCIPR----SFGNLT 217 (329)
Q Consensus 159 ~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~----~l~~~~ 217 (329)
...|+.+ +.-..|.+|.+.+|.+..+....+ ..-|.|+++....|.+...... .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 5554433 445678888888776653322222 2346777777777766532211 122224
Q ss_pred CCcEEEccCccccCCCC-----ccccCCCcccEEEccCCccCCCCCCcccc-cccCCCceEEeccCCcccccCCccc---
Q 046683 218 NLIQLFLSFNNLSGSIP-----REIGNLRSLVQLALDQNQFTGFLPPSLGN-ICRGGALQYFGVSENHFQGTIPKSL--- 288 (329)
Q Consensus 218 ~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~--- 288 (329)
.|+.+.+..|.+..... ..+..+++|+.|+++.|.++......+.. ++..+.|+.|.+.+|-+.......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 67777777776652211 12335677777777777776443333322 2333556777777776553333221
Q ss_pred ---ccCCCccEEEecCCccccchh-----hhh--hhcCCCcEEEcCCccc
Q 046683 289 ---KYCTSLFRVRVDGNNLTGNIS-----QAL--GIYHNLTFIDLSRNNF 328 (329)
Q Consensus 289 ---~~~~~L~~L~l~~~~l~~~~~-----~~~--~~~~~L~~L~l~~n~~ 328 (329)
...|+|..|...+|.+.+.+. ..+ ..+|-|..+.+.||+|
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 134677777777775544211 112 2456666666777765
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.29 E-value=1e-08 Score=86.61 Aligned_cols=314 Identities=17% Similarity=0.008 Sum_probs=190.9
Q ss_pred CCCceecceeecCCCCeeEEeecCCCC--cCccCCcccccCC-ceeEEeecCCccC-CC-CchhcCCCCCCcEEecCCcc
Q 046683 11 IRPCAWSGISCNDAGRVINISLTNTGL--SGTLHDFSFSLFP-HLAYLDLSFNELF-GI-IPPQIGNLSKLQLLSLHANA 85 (329)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~l~l~~~~~--~~~~~~~~~~~~~-~L~~L~l~~~~~~-~~-~~~~~~~l~~L~~L~l~~~~ 85 (329)
+.+|..+..-.......+++++-.... .|......+.++- .|+.|.++++.-. .. ....-..+|++++|.+.+|.
T Consensus 96 a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 96 AQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred HHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 445644444334455688888875442 2333333444554 6899999998633 22 22334678999999998875
Q ss_pred -cccccCccc-ccCCCccEEEeecCcC-CCCC-C-CCCCCCCccEEEccCCccccC--CCcccCCCCCCcEEEccCceec
Q 046683 86 -FSGKIPCEI-FLLTHLKFLILHSNKL-NGSI-P-PLGNLNNLVKLFLLNNSLSGS--IPPDIGNLKSLSELDLSINQLS 158 (329)
Q Consensus 86 -i~~~~~~~~-~~~~~L~~L~l~~~~~-~~~~-~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~ 158 (329)
+++.....+ +.|++|++|++..|.. +... . ....|++|+++.+++|..... +....++++.++.+...+|.-
T Consensus 176 ~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e- 254 (483)
T KOG4341|consen 176 KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE- 254 (483)
T ss_pred eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc-
Confidence 332222223 3699999999988643 2211 1 246799999999999853311 223345666677776666531
Q ss_pred ccCCccc----cCCCCccEEecCCcc-cCCCCCc-CcCCCCCccEEEccCCcCCCC-CCccc-cCCCCCcEEEccCccc-
Q 046683 159 GSIPPSM----GNLSNLNRLFLYDNL-LYGSIPP-NVGNLKSLLVLQLDENQLSGC-IPRSF-GNLTNLIQLFLSFNNL- 229 (329)
Q Consensus 159 ~~~~~~l----~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~l-~~~~~L~~L~l~~~~~- 229 (329)
...+.+ ..++-+.++++..|. +++...- .-..+..|+.+..+++...+. ....+ .+.++|+.+.+..|.-
T Consensus 255 -~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 255 -LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred -ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 111222 123445556655653 3322110 113456889999888754222 12222 3568999999999864
Q ss_pred cCCCCcc-ccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCc-ccccC----CcccccCCCccEEEecCCc
Q 046683 230 SGSIPRE-IGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENH-FQGTI----PKSLKYCTSLFRVRVDGNN 303 (329)
Q Consensus 230 ~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~~~~~L~~L~l~~~~ 303 (329)
+...... -++++.|+.+++.++....+. .....-.+++.|+.+.++.|. +++.. ...-.....+..+.+++++
T Consensus 334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 334 SDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hhhhhhhhhcCChhhhhhcccccceehhh-hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 3222222 247789999999998765332 222223577899999999873 44332 2222456789999999996
Q ss_pred c-ccchhhhhhhcCCCcEEEcCCcc
Q 046683 304 L-TGNISQALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 304 l-~~~~~~~~~~~~~L~~L~l~~n~ 327 (329)
. ++...+.+..+++|+.+++-+|+
T Consensus 413 ~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 413 LITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchHHHHHHHhhCcccceeeeechh
Confidence 6 44677888999999999987765
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.4e-06 Score=50.39 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=18.2
Q ss_pred CccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 293 SLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 293 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+|++|++++|+++ .++..++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33434555555555555555553
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=1.2e-07 Score=76.01 Aligned_cols=206 Identities=19% Similarity=0.154 Sum_probs=109.8
Q ss_pred CCceeEEeecCCccCCCCchhc----CCCCCCcEEecCCcccc---c-------ccCcccccCCCccEEEeecCcCCCCC
Q 046683 49 FPHLAYLDLSFNELFGIIPPQI----GNLSKLQLLSLHANAFS---G-------KIPCEIFLLTHLKFLILHSNKLNGSI 114 (329)
Q Consensus 49 ~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~i~---~-------~~~~~~~~~~~L~~L~l~~~~~~~~~ 114 (329)
+..+..+++|+|.|.+.....+ .+-++|+..+++.-... + .+..++-+||+|+..++|+|.+..-.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5566677777776665433332 34456666666542111 1 12234445777777777777654333
Q ss_pred CC-----CCCCCCccEEEccCCccccCCCcc-------------cCCCCCCcEEEccCceecccC----CccccCCCCcc
Q 046683 115 PP-----LGNLNNLVKLFLLNNSLSGSIPPD-------------IGNLKSLSELDLSINQLSGSI----PPSMGNLSNLN 172 (329)
Q Consensus 115 ~~-----~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~ 172 (329)
+. +.+-..|.+|.+++|++....... ...-|.|+.+....|++.... ...+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 22 556667777777777655322221 123366777777776654211 11222224677
Q ss_pred EEecCCcccCCCCCc-----CcCCCCCccEEEccCCcCCCC----CCccccCCCCCcEEEccCccccCCCCc----ccc-
Q 046683 173 RLFLYDNLLYGSIPP-----NVGNLKSLLVLQLDENQLSGC----IPRSFGNLTNLIQLFLSFNNLSGSIPR----EIG- 238 (329)
Q Consensus 173 ~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~- 238 (329)
.+.+..|.+...-.. .+..+.+|+.|++.+|-++-. +...++.++.|++|.+.+|.++..... .|.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 777766665432111 123446777777777765522 233455666777777777766532221 111
Q ss_pred -CCCcccEEEccCCccC
Q 046683 239 -NLRSLVQLALDQNQFT 254 (329)
Q Consensus 239 -~~~~L~~L~l~~~~l~ 254 (329)
..|+|..|...+|...
T Consensus 269 ~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 269 KFVPNLMPLPGDYNERR 285 (388)
T ss_pred hcCCCccccccchhhhc
Confidence 3366666666666554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.23 E-value=3.1e-06 Score=65.04 Aligned_cols=108 Identities=21% Similarity=0.139 Sum_probs=72.6
Q ss_pred CCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCC-CCccccCCCcccEEE
Q 046683 169 SNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGS-IPREIGNLRSLVQLA 247 (329)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 247 (329)
.....+++++|.+.. ...+..++.|.+|.+.+|.|+..-+..-..+++|..|.+.+|.+... ....++.||.|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 356667777777653 23567777888888888887765555445567788888888777532 123556778888888
Q ss_pred ccCCccCCCCCCcccccccCCCceEEeccCC
Q 046683 248 LDQNQFTGFLPPSLGNICRGGALQYFGVSEN 278 (329)
Q Consensus 248 l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~ 278 (329)
+-+|++.....--...+...++|+.||+.+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888876554444444566788888887654
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.14 E-value=9.7e-06 Score=59.72 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=50.2
Q ss_pred cCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCC
Q 046683 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNL 120 (329)
Q Consensus 41 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 120 (329)
++..+|..+.+|+.+.+.. .+......+|.++++|+.+.+.+. +......+|..++.++.+.+.+....-....+..+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNC 80 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccccccccccccccc
Confidence 3445666667777777653 344444556666666777776653 44333445666666666666542211122234455
Q ss_pred CCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCc
Q 046683 121 NNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNL 171 (329)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 171 (329)
++|+.+.+..+ +.......+.++ +++.+.+.. .+..+....|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666666443 333334445554 555555543 2222333444444443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.04 E-value=1.1e-05 Score=62.14 Aligned_cols=103 Identities=23% Similarity=0.191 Sum_probs=49.8
Q ss_pred CccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceeccc-CCccccCCCCccEEecC
Q 046683 99 HLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGS-IPPSMGNLSNLNRLFLY 177 (329)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~ 177 (329)
....++++++.+- ..+.+..++.|..|.+++|.|+.+.+..-.-+++|+.|.+.+|.+... -...+..+|+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4445555555443 333455555555666666555555444444445555555555554321 11233445556665555
Q ss_pred CcccCCCCCc---CcCCCCCccEEEccC
Q 046683 178 DNLLYGSIPP---NVGNLKSLLVLQLDE 202 (329)
Q Consensus 178 ~~~~~~~~~~---~~~~~~~L~~L~l~~ 202 (329)
+|.+...-.+ .+..+|+|+.||+.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 5554422111 223445555555444
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=5.2e-08 Score=88.00 Aligned_cols=107 Identities=32% Similarity=0.317 Sum_probs=49.3
Q ss_pred CCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcE
Q 046683 142 GNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQ 221 (329)
Q Consensus 142 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 221 (329)
.-++.++.|+++.|+++.+ ..+..+++|++|+++.|.+.. ++..-..-.+|+.|.+.+|.++.. ..+..+.+|+.
T Consensus 184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhh--hhHHhhhhhhc
Confidence 3334555555555555433 245555555555555555542 222111112355555555555422 12334455555
Q ss_pred EEccCccccCC-CCccccCCCcccEEEccCCcc
Q 046683 222 LFLSFNNLSGS-IPREIGNLRSLVQLALDQNQF 253 (329)
Q Consensus 222 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l 253 (329)
|++++|-+.+. ....++.+..|+.|.+.||++
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55555544321 112333444555555555554
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=2.5e-06 Score=79.85 Aligned_cols=132 Identities=18% Similarity=0.166 Sum_probs=71.4
Q ss_pred CCCcEEecCCccccccc-Ccccc-cCCCccEEEeecCcCCCC--CCCCCCCCCccEEEccCCccccCCCcccCCCCCCcE
Q 046683 74 SKLQLLSLHANAFSGKI-PCEIF-LLTHLKFLILHSNKLNGS--IPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSE 149 (329)
Q Consensus 74 ~~L~~L~l~~~~i~~~~-~~~~~-~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 149 (329)
.+|++|+++|.+.-... +..++ .+|.|+.|.+.+-.+... ..-..++|+|..|+++++++... ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56777777664322111 11222 367777777766544321 12245667777777777766533 55666677777
Q ss_pred EEccCceeccc-CCccccCCCCccEEecCCcccCCCC--C----cCcCCCCCccEEEccCCcCCC
Q 046683 150 LDLSINQLSGS-IPPSMGNLSNLNRLFLYDNLLYGSI--P----PNVGNLKSLLVLQLDENQLSG 207 (329)
Q Consensus 150 L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~--~----~~~~~~~~L~~L~l~~~~~~~ 207 (329)
|.+.+-.+... .-..+.++.+|+.|+++.....+.. . +--..+|+|+.||.+++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66665444321 1124456677777777665443221 0 001235677777777766653
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.86 E-value=7.4e-05 Score=54.93 Aligned_cols=107 Identities=19% Similarity=0.158 Sum_probs=50.8
Q ss_pred chhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCC-CCCCCCCCccEEEccCCccccCCCcccCCCC
Q 046683 67 PPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSI-PPLGNLNNLVKLFLLNNSLSGSIPPDIGNLK 145 (329)
Q Consensus 67 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 145 (329)
..+|.++++|+.+.+.. .+......+|.++++|+.+.+.+. +.... ..+..++.++.+.+.+ .+.......+..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34567777788877764 344344556777777777777664 33322 2356666677777754 33334455566666
Q ss_pred CCcEEEccCceecccCCccccCCCCccEEecCC
Q 046683 146 SLSELDLSINQLSGSIPPSMGNLSNLNRLFLYD 178 (329)
Q Consensus 146 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 178 (329)
+++.+.+..+ +.......+.++ .++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6666666543 332334445554 666665544
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=5.6e-06 Score=77.58 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=80.0
Q ss_pred CeeEEeecCCCCc-CccCCcccccCCceeEEeecCCccCCC-CchhcCCCCCCcEEecCCcccccccCcccccCCCccEE
Q 046683 26 RVINISLTNTGLS-GTLHDFSFSLFPHLAYLDLSFNELFGI-IPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFL 103 (329)
Q Consensus 26 ~l~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 103 (329)
++++|++++.... ...+..--..+|.|++|.+.+-.+... ......++|+|+.|||+++.++.. ..+.++++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5677777665432 112221234567777777776655432 223345667777777777766522 445567777777
Q ss_pred EeecCcCCC--CCCCCCCCCCccEEEccCCccccCC------CcccCCCCCCcEEEccCceecccCCccc-cCCCCccEE
Q 046683 104 ILHSNKLNG--SIPPLGNLNNLVKLFLLNNSLSGSI------PPDIGNLKSLSELDLSINQLSGSIPPSM-GNLSNLNRL 174 (329)
Q Consensus 104 ~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L 174 (329)
.+++-.+.. ....+..+.+|+.|+++........ ...-..+|.|+.|+.++..+.....+.+ ..-|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 776655543 1123566677777777654332111 0111235677777777766553322222 234555555
Q ss_pred ecCC
Q 046683 175 FLYD 178 (329)
Q Consensus 175 ~l~~ 178 (329)
...+
T Consensus 281 ~~~~ 284 (699)
T KOG3665|consen 281 AALD 284 (699)
T ss_pred hhhh
Confidence 4443
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=3e-07 Score=66.11 Aligned_cols=113 Identities=24% Similarity=0.194 Sum_probs=80.9
Q ss_pred eecCCCCeeEEeecCCCCcCccCCcc--cccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccC
Q 046683 20 SCNDAGRVINISLTNTGLSGTLHDFS--FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLL 97 (329)
Q Consensus 20 ~~~~~~~l~~l~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~ 97 (329)
.|+..+.+-.++|+.|++- .+++.+ +...-+|+..++++|.+...++..-...+.++.|++.+|++. +.|..+..+
T Consensus 22 rcedakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam 99 (177)
T KOG4579|consen 22 RCEDAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAM 99 (177)
T ss_pred hhHHHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhh
Confidence 3555555667788888763 344311 233446777888888888666665567778888999888888 778888888
Q ss_pred CCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccc
Q 046683 98 THLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLS 134 (329)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 134 (329)
+.|+.|+++.|++...+..+-.+.++-.|+..++...
T Consensus 100 ~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 100 PALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred HHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 9999999998888766666555777777777776554
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=1.8e-05 Score=45.76 Aligned_cols=36 Identities=42% Similarity=0.672 Sum_probs=17.5
Q ss_pred ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccc
Q 046683 51 HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFS 87 (329)
Q Consensus 51 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 87 (329)
+|++|++++|.++.. +..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 455555555555532 223455555555555555544
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00039 Score=60.62 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=29.3
Q ss_pred ccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecC
Q 046683 47 SLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSN 108 (329)
Q Consensus 47 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 108 (329)
..++++++|++++|.+...+ . -..+|+.|.+++|.-...+|..+ .++|+.|.+++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP--V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC--C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 33566666666666555332 1 11246666666543322344333 346666666665
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.0006 Score=59.46 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=74.8
Q ss_pred cCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCC-ccccCCCcccCCCCCCc
Q 046683 70 IGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNN-SLSGSIPPDIGNLKSLS 148 (329)
Q Consensus 70 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~ 148 (329)
+..+++++.|++++|.++ .+|. -.++|+.|.+++|......+.. -.++|++|.+.+| .+. ..| +.|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccc-ccc------cccc
Confidence 456788999999988766 5552 2457889998876543232321 1357888888877 332 222 2466
Q ss_pred EEEccCceecccCCccccCC-CCccEEecCCcccCC--CCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEcc
Q 046683 149 ELDLSINQLSGSIPPSMGNL-SNLNRLFLYDNLLYG--SIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLS 225 (329)
Q Consensus 149 ~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 225 (329)
.|++..+... .+..+ ++|+.|.+.++.... ..+. .-.++|++|.+.+|... ..+..++ .+|+.|.++
T Consensus 116 ~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCc-----ccccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 6666544322 12222 346666664322110 1111 12256777777777654 2333333 577777776
Q ss_pred Cc
Q 046683 226 FN 227 (329)
Q Consensus 226 ~~ 227 (329)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 54
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=5.2e-06 Score=59.85 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
-+++.+++++|.+. .+|...-..+|.++.++++.+.+.+.+.+ +..++.|+.|+++.|.+. ..|..+..+.++-+|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 46888999999886 67774456778999999999999976655 899999999999999988 6777777788999999
Q ss_pred eecCcCCCCCCC
Q 046683 105 LHSNKLNGSIPP 116 (329)
Q Consensus 105 l~~~~~~~~~~~ 116 (329)
..++........
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 988877654443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=3.9e-05 Score=61.55 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=46.2
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCcEEEccCc--cccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCc
Q 046683 193 KSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN--NLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGAL 270 (329)
Q Consensus 193 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L 270 (329)
..|+.+.+.+..+++ ...+..+|+|++|.++.| .+...+......+|+|+++++++|++.. ...+..+....+|
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 344445555544442 233455666777777666 3343343344455777777777776652 4444444455566
Q ss_pred eEEeccCCccc
Q 046683 271 QYFGVSENHFQ 281 (329)
Q Consensus 271 ~~L~l~~~~~~ 281 (329)
..|++.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 66666665443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.31 E-value=0.00019 Score=57.67 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=66.8
Q ss_pred CCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccC--CCCCCcccccccCCCceEEeccCCcccc-cCCcccccC
Q 046683 215 NLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFT--GFLPPSLGNICRGGALQYFGVSENHFQG-TIPKSLKYC 291 (329)
Q Consensus 215 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~ 291 (329)
.+..|+.+.+.++.++ ....|..+++|++|.++.|... ..+... ...+++|+++++++|++.. ....-+..+
T Consensus 41 ~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCccccccccchhhhh
Confidence 3456667777776665 2234557789999999998443 222221 2345899999999998763 111223566
Q ss_pred CCccEEEecCCccc---cchhhhhhhcCCCcEEEc
Q 046683 292 TSLFRVRVDGNNLT---GNISQALGIYHNLTFIDL 323 (329)
Q Consensus 292 ~~L~~L~l~~~~l~---~~~~~~~~~~~~L~~L~l 323 (329)
++|..|++.+|..+ +..-..|.-+++|++||-
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 77888888888544 344566777888888764
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.14 E-value=1.3e-05 Score=73.13 Aligned_cols=112 Identities=24% Similarity=0.084 Sum_probs=63.3
Q ss_pred cccCCceeEEeecCCc-cCCC-CchhcCCCCCCcEEecCCc-ccccc----cCcccccCCCccEEEeecCc-CCCCCC-C
Q 046683 46 FSLFPHLAYLDLSFNE-LFGI-IPPQIGNLSKLQLLSLHAN-AFSGK----IPCEIFLLTHLKFLILHSNK-LNGSIP-P 116 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~-~i~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~-~ 116 (329)
...++.|+.+.+.++. +... .......+++|+.|+++++ ..... .......+++|+.++++.+. +++..- .
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3457778888887774 3322 2234456788888888762 11111 11233346778888887776 332111 1
Q ss_pred -CCCCCCccEEEccCCc-cccCC-CcccCCCCCCcEEEccCcee
Q 046683 117 -LGNLNNLVKLFLLNNS-LSGSI-PPDIGNLKSLSELDLSINQL 157 (329)
Q Consensus 117 -~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~ 157 (329)
...+++|+.|.+.+|. +++.. ......++.|++|++..+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2347788888876665 33222 22234667788888877653
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=3.1e-05 Score=62.66 Aligned_cols=100 Identities=24% Similarity=0.203 Sum_probs=62.0
Q ss_pred CCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccC-CcccccCCCc
Q 046683 216 LTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTI-PKSLKYCTSL 294 (329)
Q Consensus 216 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 294 (329)
+.+.++|+.++|.+.+ ......++.|+.|.++-|+++ .+..+..|.+|++|-+..|.|.+.. ...+.++|+|
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs-----sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS-----SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccc-----cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3456667777776652 234456677777777777765 2334456677777777777665321 2345677888
Q ss_pred cEEEecCCccccch-----hhhhhhcCCCcEEE
Q 046683 295 FRVRVDGNNLTGNI-----SQALGIYHNLTFID 322 (329)
Q Consensus 295 ~~L~l~~~~l~~~~-----~~~~~~~~~L~~L~ 322 (329)
+.|++..|+=.+.. ...+.-+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888777555432 33455677777765
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=2.3e-05 Score=71.48 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=9.0
Q ss_pred ccCCCcccEEEccCCc
Q 046683 237 IGNLRSLVQLALDQNQ 252 (329)
Q Consensus 237 ~~~~~~L~~L~l~~~~ 252 (329)
...+++++.+.+.++.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3455666666665555
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=3.1e-05 Score=62.72 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=50.7
Q ss_pred ceeecCCCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccC--cccc
Q 046683 18 GISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIP--CEIF 95 (329)
Q Consensus 18 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~ 95 (329)
...|+...++..|.+.+|++. ++. ....+|-|+.|.|+-|+|+.. ..+..|+.|+.|.|+.|.|. .+. ..+.
T Consensus 12 raK~sdl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLk 85 (388)
T KOG2123|consen 12 RAKCSDLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLK 85 (388)
T ss_pred HHHhhHHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHh
Confidence 344555556667777777665 221 235666777777777776644 23556677777777776665 222 2445
Q ss_pred cCCCccEEEeecCc
Q 046683 96 LLTHLKFLILHSNK 109 (329)
Q Consensus 96 ~~~~L~~L~l~~~~ 109 (329)
++|+|+.|-|..|+
T Consensus 86 nlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 86 NLPSLRTLWLDENP 99 (388)
T ss_pred cCchhhhHhhccCC
Confidence 66666666665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.66 E-value=0.02 Score=27.35 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=10.1
Q ss_pred ccEEEecCCccccchhhhhh
Q 046683 294 LFRVRVDGNNLTGNISQALG 313 (329)
Q Consensus 294 L~~L~l~~~~l~~~~~~~~~ 313 (329)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666555 4444343
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.007 Score=47.04 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=62.6
Q ss_pred CCCcEEEccCccccCCCCccccCCCcccEEEccCCccCC-CCCCcccccccCCCceEEeccCC-cccccCCcccccCCCc
Q 046683 217 TNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTG-FLPPSLGNICRGGALQYFGVSEN-HFQGTIPKSLKYCTSL 294 (329)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L 294 (329)
..++.++-+++.+..+....+..++.++.|.+.+|+-.+ +....+.. ..++|+.|++++| +|++.....+..+++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHHhhhh
Confidence 346778888888877777788888899999998886433 22223332 3478899999988 7777777777788888
Q ss_pred cEEEecCCcc
Q 046683 295 FRVRVDGNNL 304 (329)
Q Consensus 295 ~~L~l~~~~l 304 (329)
+.|.+.+-+-
T Consensus 179 r~L~l~~l~~ 188 (221)
T KOG3864|consen 179 RRLHLYDLPY 188 (221)
T ss_pred HHHHhcCchh
Confidence 8888877643
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.59 E-value=0.02 Score=27.96 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=13.8
Q ss_pred CCCccEEEecCCccccchhhhhh
Q 046683 291 CTSLFRVRVDGNNLTGNISQALG 313 (329)
Q Consensus 291 ~~~L~~L~l~~~~l~~~~~~~~~ 313 (329)
+++|+.|++++|++++..+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35677777777777766665554
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.45 E-value=0.027 Score=24.96 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=7.0
Q ss_pred CCCcEEEcCCcccC
Q 046683 316 HNLTFIDLSRNNFY 329 (329)
Q Consensus 316 ~~L~~L~l~~n~~~ 329 (329)
++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35667777777653
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.0023 Score=49.60 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=56.0
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCC-CCccc-cCCCcccEEEccCCc-cCCCCCCcccccccCCC
Q 046683 193 KSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGS-IPREI-GNLRSLVQLALDQNQ-FTGFLPPSLGNICRGGA 269 (329)
Q Consensus 193 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~~~ 269 (329)
..++.++-+++.+.....+.+..++.++.|.+.+|.--+. ....+ .-.++|+.|++++|+ |++. .+..+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~---GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG---GLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh---HHHHHHHhhh
Confidence 3578889888888877777888888999999888854321 11111 134789999999885 4433 3333445577
Q ss_pred ceEEeccCC
Q 046683 270 LQYFGVSEN 278 (329)
Q Consensus 270 L~~L~l~~~ 278 (329)
|+.|.+.+-
T Consensus 178 Lr~L~l~~l 186 (221)
T KOG3864|consen 178 LRRLHLYDL 186 (221)
T ss_pred hHHHHhcCc
Confidence 887777654
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.42 E-value=0.0002 Score=64.38 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=16.9
Q ss_pred ccEEEeecCcCCCCCC-----CCCCCCCccEEEccCCccc
Q 046683 100 LKFLILHSNKLNGSIP-----PLGNLNNLVKLFLLNNSLS 134 (329)
Q Consensus 100 L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~ 134 (329)
+..+.+.+|.+..-.. .+...+.|+.|+++++.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 4555555555443211 1444555555555555443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.52 E-value=0.00068 Score=61.07 Aligned_cols=186 Identities=24% Similarity=0.207 Sum_probs=107.1
Q ss_pred CccEEEccCCccccC----CCcccCCCCCCcEEEccCceecccC----CccccCC-CCccEEecCCcccCCCCC----cC
Q 046683 122 NLVKLFLLNNSLSGS----IPPDIGNLKSLSELDLSINQLSGSI----PPSMGNL-SNLNRLFLYDNLLYGSIP----PN 188 (329)
Q Consensus 122 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~-~~L~~L~l~~~~~~~~~~----~~ 188 (329)
.+..+.+.+|.+... ....+...+.|+.|++++|.+.+.- ...+... ..+++|.+..|.+..... ..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 377778888776533 3344667778888888888776322 1222222 456667777776664322 23
Q ss_pred cCCCCCccEEEccCCcCCCC----CCcccc----CCCCCcEEEccCccccCCCC----ccccCCCc-ccEEEccCCccCC
Q 046683 189 VGNLKSLLVLQLDENQLSGC----IPRSFG----NLTNLIQLFLSFNNLSGSIP----REIGNLRS-LVQLALDQNQFTG 255 (329)
Q Consensus 189 ~~~~~~L~~L~l~~~~~~~~----~~~~l~----~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~L~l~~~~l~~ 255 (329)
+...+.++.+++..|.+... .+..+. ...+++.|.+.+|.++.... ..+...+. ++.+++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 34467778888888776422 122222 34567778888777663221 23333344 5667777777764
Q ss_pred CCCCc-ccccccC-CCceEEeccCCcccccCC----cccccCCCccEEEecCCccccc
Q 046683 256 FLPPS-LGNICRG-GALQYFGVSENHFQGTIP----KSLKYCTSLFRVRVDGNNLTGN 307 (329)
Q Consensus 256 ~~~~~-l~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~ 307 (329)
..... .+.+... ..++.+++..|.+.+... ..+..++.++.+.+.+|++.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 31111 1112222 466777777777765333 3345567777777777777763
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.47 E-value=0.6 Score=23.71 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=14.8
Q ss_pred CCccEEEecCCccccchhhhhh
Q 046683 292 TSLFRVRVDGNNLTGNISQALG 313 (329)
Q Consensus 292 ~~L~~L~l~~~~l~~~~~~~~~ 313 (329)
++|++|++++|.+.+.....++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4677788888877765555544
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.38 E-value=0.61 Score=23.27 Aligned_cols=13 Identities=46% Similarity=0.623 Sum_probs=8.3
Q ss_pred CCCcEEEcCCccc
Q 046683 316 HNLTFIDLSRNNF 328 (329)
Q Consensus 316 ~~L~~L~l~~n~~ 328 (329)
.+|+.|++++|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4566666666665
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.17 E-value=0.66 Score=22.91 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=5.8
Q ss_pred CCcEEecCCcccc
Q 046683 75 KLQLLSLHANAFS 87 (329)
Q Consensus 75 ~L~~L~l~~~~i~ 87 (329)
+|++|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.17 E-value=0.66 Score=22.91 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=5.8
Q ss_pred CCcEEecCCcccc
Q 046683 75 KLQLLSLHANAFS 87 (329)
Q Consensus 75 ~L~~L~l~~~~i~ 87 (329)
+|++|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.66 E-value=1.2 Score=22.05 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=9.4
Q ss_pred CCCccEEEecCC-ccccch
Q 046683 291 CTSLFRVRVDGN-NLTGNI 308 (329)
Q Consensus 291 ~~~L~~L~l~~~-~l~~~~ 308 (329)
|+.|++|++++| .+++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 355566666665 344433
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.67 E-value=0.053 Score=43.38 Aligned_cols=93 Identities=17% Similarity=0.087 Sum_probs=65.2
Q ss_pred ccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCC
Q 046683 40 TLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGN 119 (329)
Q Consensus 40 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 119 (329)
++|-..+..++..+.|+++.+.....- ..|..+..+..|+++.+++. ..|+.+.....++.+++..|..+..+-.+..
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 345445667777888888877655322 23445566777888888776 6777777777777888877777777777778
Q ss_pred CCCccEEEccCCccc
Q 046683 120 LNNLVKLFLLNNSLS 134 (329)
Q Consensus 120 ~~~L~~L~l~~~~~~ 134 (329)
.|++++++..++.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 888888877776544
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.94 E-value=2.5 Score=38.47 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCCcccEEEccCCccCCCCCCccccc-ccCCCceEEeccCCcccccCCccccc--CCCccEEEecCCcccc
Q 046683 239 NLRSLVQLALDQNQFTGFLPPSLGNI-CRGGALQYFGVSENHFQGTIPKSLKY--CTSLFRVRVDGNNLTG 306 (329)
Q Consensus 239 ~~~~L~~L~l~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~l~~ 306 (329)
+.+.+..+++++|++... +.+..+ ...+.|+.|++++|+..-.....+.. ..-|++|.+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456666667777765421 111111 23366777777776322111122222 2345677777777654
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.35 E-value=3.1 Score=20.71 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=8.0
Q ss_pred CCcEEEcCCcccC
Q 046683 317 NLTFIDLSRNNFY 329 (329)
Q Consensus 317 ~L~~L~l~~n~~~ 329 (329)
.|+.|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4566666666653
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=60.22 E-value=0.15 Score=40.97 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=58.7
Q ss_pred cCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcE
Q 046683 70 IGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSE 149 (329)
Q Consensus 70 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 149 (329)
+......+.|+++.++.- .....|.-++.+..++++.+.+.-.+..+.....++.+..++|... ..|..++..+.+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 455667777888777655 4455555667777778877776655556666666777777766554 56667777777777
Q ss_pred EEccCceec
Q 046683 150 LDLSINQLS 158 (329)
Q Consensus 150 L~l~~~~~~ 158 (329)
+++.++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777776644
No 87
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=58.65 E-value=5 Score=22.65 Aligned_cols=13 Identities=46% Similarity=1.533 Sum_probs=9.5
Q ss_pred CCCCceecceeec
Q 046683 10 KIRPCAWSGISCN 22 (329)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (329)
...+|.|.|+.|+
T Consensus 31 ~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 31 DSDPCSWSGVTCD 43 (43)
T ss_dssp -S-CCCSTTEEE-
T ss_pred CCCCeeeccEEeC
Confidence 3799999999984
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.32 E-value=61 Score=29.47 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=30.0
Q ss_pred cccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccc----cCCcccccCCCccEEEecCCccc
Q 046683 242 SLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQG----TIPKSLKYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 242 ~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~ 305 (329)
-+..+.++.++...........+..-+.+..|++++|...+ .++.......+++.+..+.|..+
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 34555555555544333333333444566666666664432 22333333344555555555433
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.24 E-value=5.1 Score=36.62 Aligned_cols=63 Identities=22% Similarity=0.160 Sum_probs=28.6
Q ss_pred CCCccEEecCCcccCCC--CCcCcCCCCCccEEEccCCcCCCCCCcccc--CCCCCcEEEccCcccc
Q 046683 168 LSNLNRLFLYDNLLYGS--IPPNVGNLKSLLVLQLDENQLSGCIPRSFG--NLTNLIQLFLSFNNLS 230 (329)
Q Consensus 168 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~ 230 (329)
.+.+..+.+++|++... +.......|+|..|+|++|.........+. +..-|++|.+.+|++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 45566666666655421 111123345666666666621111111111 1234566666666554
Done!