Query 046683
Match_columns 329
No_of_seqs 162 out of 2588
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 05:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 100.0 8.8E-37 3E-41 274.2 19.0 301 25-329 30-408 (455)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-36 4.9E-41 288.8 20.6 303 25-328 294-692 (768)
3 3rgz_A Protein brassinosteroid 100.0 4.1E-36 1.4E-40 285.7 22.7 302 25-329 318-717 (768)
4 2id5_A Lingo-1, leucine rich r 100.0 2.3E-35 7.9E-40 266.5 21.9 301 25-329 32-333 (477)
5 4eco_A Uncharacterized protein 100.0 1.6E-35 5.5E-40 275.8 17.3 312 8-329 61-526 (636)
6 3t6q_A CD180 antigen; protein- 100.0 1.7E-33 6E-38 261.5 27.9 298 26-329 255-560 (606)
7 2id5_A Lingo-1, leucine rich r 100.0 1.5E-33 5.1E-38 254.6 21.9 295 28-329 14-309 (477)
8 4eco_A Uncharacterized protein 100.0 2.7E-33 9.3E-38 260.8 22.8 298 24-328 205-578 (636)
9 4ecn_A Leucine-rich repeat pro 100.0 1.2E-33 4.2E-38 268.2 20.1 305 17-329 315-766 (876)
10 3vq2_A TLR4, TOLL-like recepto 100.0 6.9E-33 2.4E-37 257.5 24.6 301 25-329 32-534 (606)
11 4fmz_A Internalin; leucine ric 100.0 2E-32 6.7E-37 237.3 25.7 263 46-329 84-346 (347)
12 1ogq_A PGIP-2, polygalacturona 100.0 2E-33 7E-38 239.6 18.0 264 9-279 29-302 (313)
13 3t6q_A CD180 antigen; protein- 100.0 3.6E-32 1.2E-36 252.7 26.4 277 51-329 255-536 (606)
14 3o6n_A APL1; leucine-rich repe 100.0 2.1E-32 7E-37 240.9 22.3 288 25-328 45-351 (390)
15 4fmz_A Internalin; leucine ric 100.0 2E-31 7E-36 230.9 27.7 282 24-329 43-324 (347)
16 3v47_A TOLL-like receptor 5B a 100.0 1.3E-32 4.5E-37 247.0 19.5 283 24-309 53-412 (455)
17 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-32 1.7E-36 260.0 24.6 302 24-329 23-375 (844)
18 1xku_A Decorin; proteoglycan, 100.0 4.4E-31 1.5E-35 227.2 27.1 289 26-327 32-330 (330)
19 2z7x_B TOLL-like receptor 1, v 100.0 9.7E-32 3.3E-36 245.3 24.1 157 167-329 322-481 (520)
20 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-31 9.6E-36 228.6 25.5 288 26-327 34-331 (332)
21 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-31 4.5E-36 248.9 24.4 180 145-329 376-558 (606)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-31 8.3E-36 244.8 25.3 295 25-329 52-510 (562)
23 2z63_A TOLL-like receptor 4, v 100.0 5.6E-32 1.9E-36 249.6 21.2 131 26-157 29-161 (570)
24 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-31 1.7E-35 248.1 27.7 299 26-328 249-621 (680)
25 2z63_A TOLL-like receptor 4, v 100.0 6.4E-32 2.2E-36 249.2 21.0 138 189-329 392-531 (570)
26 4ecn_A Leucine-rich repeat pro 100.0 1.1E-31 3.8E-36 254.8 23.0 297 24-328 447-818 (876)
27 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-31 1.1E-35 249.4 24.6 299 25-327 25-364 (680)
28 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-31 5E-36 244.1 20.9 294 25-329 21-457 (520)
29 2z81_A CD282 antigen, TOLL-lik 100.0 7.4E-33 2.5E-37 254.4 12.3 155 25-180 26-183 (549)
30 3oja_B Anopheles plasmodium-re 100.0 6E-31 2.1E-35 243.5 24.6 290 25-328 51-357 (597)
31 3j0a_A TOLL-like receptor 5; m 100.0 8.6E-31 2.9E-35 251.5 25.3 297 24-328 47-393 (844)
32 3o6n_A APL1; leucine-rich repe 100.0 1.5E-30 5E-35 229.0 24.1 270 47-329 42-331 (390)
33 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-30 7.6E-35 238.4 23.8 294 25-329 31-486 (562)
34 1o6v_A Internalin A; bacterial 100.0 7.9E-30 2.7E-34 229.4 25.6 281 25-328 68-387 (466)
35 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-30 1.1E-34 236.9 23.3 302 24-329 49-510 (549)
36 1o6v_A Internalin A; bacterial 100.0 1.6E-29 5.4E-34 227.5 25.3 261 25-306 90-389 (466)
37 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-29 6.2E-34 235.6 26.3 132 26-158 53-186 (635)
38 1ogq_A PGIP-2, polygalacturona 100.0 6.5E-31 2.2E-35 224.2 14.1 249 50-327 50-302 (313)
39 3oja_B Anopheles plasmodium-re 100.0 1.1E-29 3.6E-34 235.2 23.2 268 24-308 74-361 (597)
40 2ft3_A Biglycan; proteoglycan, 100.0 3E-29 1E-33 215.9 23.9 281 14-303 33-331 (332)
41 1xku_A Decorin; proteoglycan, 100.0 8.1E-29 2.8E-33 213.0 24.9 283 13-303 30-330 (330)
42 3bz5_A Internalin-J, INLJ; leu 100.0 4.8E-28 1.6E-32 216.5 28.3 278 24-329 41-352 (457)
43 2z80_A TOLL-like receptor 2, v 100.0 2.8E-29 9.4E-34 217.9 14.3 275 30-308 36-317 (353)
44 2z66_A Variable lymphocyte rec 100.0 8.7E-28 3E-32 204.4 20.1 230 50-281 28-261 (306)
45 4fcg_A Uncharacterized protein 100.0 1.6E-27 5.6E-32 204.3 20.1 239 9-253 56-313 (328)
46 2z66_A Variable lymphocyte rec 100.0 3.1E-28 1.1E-32 207.2 15.4 240 14-255 7-262 (306)
47 2z80_A TOLL-like receptor 2, v 100.0 2.9E-28 9.8E-33 211.5 14.3 279 48-329 29-314 (353)
48 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-26 4.6E-31 216.2 25.9 149 29-182 35-186 (635)
49 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-27 1.2E-31 198.6 16.3 223 28-254 14-238 (285)
50 3bz5_A Internalin-J, INLJ; leu 99.9 4E-26 1.4E-30 204.1 23.5 214 45-285 37-250 (457)
51 3zyi_A Leucine-rich repeat-con 99.9 3.8E-26 1.3E-30 204.7 23.4 245 27-280 56-302 (452)
52 4fcg_A Uncharacterized protein 99.9 1.3E-26 4.6E-31 198.6 19.6 233 73-327 80-312 (328)
53 1ozn_A Reticulon 4 receptor; N 99.9 4.3E-26 1.5E-30 192.0 22.4 223 77-305 14-238 (285)
54 3zyj_A Leucine-rich repeat-con 99.9 6.3E-26 2.2E-30 202.5 23.8 245 27-280 45-291 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 3.4E-26 1.2E-30 204.9 21.7 246 52-305 56-303 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 3.9E-26 1.3E-30 203.9 21.7 247 51-305 44-292 (440)
57 1z7x_W Ribonuclease inhibitor; 99.9 6.9E-30 2.4E-34 229.7 -5.1 304 25-329 28-411 (461)
58 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-24 1.1E-28 197.6 29.7 257 26-329 41-297 (622)
59 2o6q_A Variable lymphocyte rec 99.9 5.5E-25 1.9E-29 183.6 22.5 215 11-229 2-217 (270)
60 1z7x_W Ribonuclease inhibitor; 99.9 2.4E-29 8.1E-34 226.2 -4.6 305 25-329 3-383 (461)
61 3o53_A Protein LRIM1, AGAP0063 99.9 9.6E-28 3.3E-32 205.0 5.3 258 26-300 11-270 (317)
62 1jl5_A Outer protein YOPM; leu 99.9 1.9E-24 6.6E-29 193.0 26.5 247 51-329 132-409 (454)
63 1jl5_A Outer protein YOPM; leu 99.9 2.3E-23 7.9E-28 186.1 29.0 267 25-329 91-370 (454)
64 3o53_A Protein LRIM1, AGAP0063 99.9 5.1E-27 1.7E-31 200.5 4.6 257 52-324 12-270 (317)
65 1wwl_A Monocyte differentiatio 99.9 1.4E-26 5E-31 197.3 6.7 248 45-305 38-309 (312)
66 1wwl_A Monocyte differentiatio 99.9 4.7E-27 1.6E-31 200.3 1.8 249 69-329 38-309 (312)
67 2z62_A TOLL-like receptor 4, v 99.9 5.7E-24 2E-28 178.1 20.2 222 79-307 12-239 (276)
68 3oja_A Leucine-rich immune mol 99.9 2.5E-25 8.5E-30 200.6 8.5 196 47-254 31-227 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-22 8.2E-27 185.0 27.5 248 25-316 61-308 (622)
70 2o6q_A Variable lymphocyte rec 99.9 7.8E-23 2.7E-27 170.6 22.1 204 98-306 16-219 (270)
71 3oja_A Leucine-rich immune mol 99.9 4.4E-24 1.5E-28 192.5 13.1 237 72-324 32-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 8.4E-23 2.9E-27 171.0 19.5 221 55-282 12-238 (276)
73 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.8E-27 169.6 21.0 198 25-229 10-207 (290)
74 3rfs_A Internalin B, repeat mo 99.9 8E-23 2.7E-27 170.7 16.7 207 72-291 39-245 (272)
75 3rfs_A Internalin B, repeat mo 99.9 9.5E-23 3.3E-27 170.2 15.2 228 75-317 20-247 (272)
76 1p9a_G Platelet glycoprotein I 99.9 2.1E-21 7.1E-26 163.4 21.3 205 44-254 4-208 (290)
77 2ast_B S-phase kinase-associat 99.9 4.7E-25 1.6E-29 190.0 -2.5 237 9-251 31-282 (336)
78 2xwt_C Thyrotropin receptor; s 99.9 3.6E-21 1.2E-25 157.6 18.3 195 51-251 32-236 (239)
79 2ast_B S-phase kinase-associat 99.9 6.9E-24 2.4E-28 182.7 1.4 221 52-278 49-282 (336)
80 3goz_A Leucine-rich repeat-con 99.9 5.2E-24 1.8E-28 185.3 0.3 257 55-311 3-303 (362)
81 3ogk_B Coronatine-insensitive 99.9 2.2E-24 7.4E-29 199.8 -2.9 302 24-329 163-526 (592)
82 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.7E-26 166.0 14.6 195 46-255 37-231 (308)
83 3goz_A Leucine-rich repeat-con 99.9 8.6E-24 2.9E-28 183.9 0.8 255 29-284 2-300 (362)
84 3m19_A Variable lymphocyte rec 99.9 1E-20 3.6E-25 155.9 18.7 189 12-206 3-192 (251)
85 4glp_A Monocyte differentiatio 99.9 5.4E-22 1.8E-26 168.9 11.3 229 75-329 65-307 (310)
86 1h6u_A Internalin H; cell adhe 99.9 5.1E-21 1.8E-25 162.5 15.9 195 94-306 37-231 (308)
87 2ca6_A RAN GTPase-activating p 99.9 4.4E-24 1.5E-28 187.4 -3.2 243 66-308 24-319 (386)
88 3m19_A Variable lymphocyte rec 99.9 1.8E-20 6.2E-25 154.5 18.5 181 121-307 14-194 (251)
89 3ogk_B Coronatine-insensitive 99.9 8.1E-24 2.8E-28 196.0 -2.4 303 26-329 139-501 (592)
90 2xwt_C Thyrotropin receptor; s 99.9 6E-21 2.1E-25 156.2 14.8 197 122-327 32-237 (239)
91 2ca6_A RAN GTPase-activating p 99.9 4E-24 1.4E-28 187.6 -5.0 238 45-284 27-319 (386)
92 4glp_A Monocyte differentiatio 99.8 5.8E-21 2E-25 162.5 12.4 224 50-282 64-308 (310)
93 2p1m_B Transport inhibitor res 99.8 7.8E-23 2.7E-27 189.4 -4.5 62 267-328 455-518 (594)
94 2p1m_B Transport inhibitor res 99.8 1.4E-22 4.7E-27 187.8 -5.2 302 24-329 104-494 (594)
95 2o6s_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 141.2 15.6 160 122-291 29-188 (208)
96 4ay9_X Follicle-stimulating ho 99.8 6.9E-18 2.4E-22 145.9 19.2 238 29-278 13-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 8.1E-18 2.8E-22 145.4 19.6 232 14-251 9-256 (350)
98 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.3E-23 145.9 13.3 172 46-230 42-213 (291)
99 2o6s_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 137.0 14.4 182 123-317 9-190 (208)
100 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.3E-23 145.1 12.6 191 52-257 26-216 (291)
101 1m9s_A Internalin B; cell inva 99.8 4.5E-18 1.5E-22 156.5 15.7 191 27-233 23-213 (605)
102 3cvr_A Invasion plasmid antige 99.8 7.6E-17 2.6E-21 146.8 20.7 154 144-316 99-254 (571)
103 1m9s_A Internalin B; cell inva 99.8 9.7E-18 3.3E-22 154.2 14.6 195 49-258 20-214 (605)
104 2v9t_B SLIT homolog 2 protein 99.8 1.9E-17 6.3E-22 133.5 14.4 153 148-306 14-166 (220)
105 3cvr_A Invasion plasmid antige 99.7 1.9E-17 6.6E-22 150.7 15.2 144 15-182 49-193 (571)
106 2v9t_B SLIT homolog 2 protein 99.7 6.4E-17 2.2E-21 130.4 16.5 134 121-254 32-165 (220)
107 3e6j_A Variable lymphocyte rec 99.7 4.2E-17 1.4E-21 132.3 15.2 162 5-182 10-172 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 3.5E-17 1.2E-21 131.9 13.8 154 148-307 14-168 (220)
109 2xot_A Amphoterin-induced prot 99.7 2.8E-17 9.5E-22 142.7 13.6 179 124-305 21-202 (361)
110 3e6j_A Variable lymphocyte rec 99.7 1.2E-16 4.3E-21 129.5 16.4 154 147-307 21-174 (229)
111 4ezg_A Putative uncharacterize 99.7 2.9E-17 9.9E-22 130.1 11.8 106 72-180 42-147 (197)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 1.8E-16 6.3E-21 127.7 15.4 131 124-254 35-166 (220)
113 2xot_A Amphoterin-induced prot 99.7 7.2E-17 2.5E-21 140.0 13.7 175 53-230 21-202 (361)
114 4ezg_A Putative uncharacterize 99.7 7.9E-17 2.7E-21 127.6 12.2 153 95-254 41-194 (197)
115 1xeu_A Internalin C; cellular 99.7 2.3E-17 7.7E-22 136.7 8.6 171 48-232 17-187 (263)
116 3sb4_A Hypothetical leucine ri 99.7 1.5E-17 5.1E-22 142.6 7.2 103 216-323 225-328 (329)
117 1xeu_A Internalin C; cellular 99.7 4.9E-17 1.7E-21 134.7 8.9 168 26-208 20-187 (263)
118 4fdw_A Leucine rich hypothetic 99.7 4.2E-15 1.4E-19 130.2 20.6 250 41-304 127-382 (401)
119 4fdw_A Leucine rich hypothetic 99.7 6.2E-15 2.1E-19 129.1 19.4 266 46-327 109-381 (401)
120 3sb4_A Hypothetical leucine ri 99.6 6.2E-16 2.1E-20 132.5 11.0 222 24-248 48-328 (329)
121 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 117.8 9.7 131 25-158 24-160 (168)
122 1dce_A Protein (RAB geranylger 99.6 1.6E-18 5.5E-23 158.4 -8.8 202 71-298 346-566 (567)
123 2ell_A Acidic leucine-rich nuc 99.6 5E-15 1.7E-19 114.0 10.8 131 74-205 24-159 (168)
124 1w8a_A SLIT protein; signaling 99.6 1.2E-14 4.2E-19 114.4 12.3 131 172-308 11-142 (192)
125 2je0_A Acidic leucine-rich nuc 99.6 5.1E-15 1.7E-19 111.6 9.6 128 193-325 17-149 (149)
126 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.2E-20 114.5 6.5 125 25-152 17-147 (149)
127 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.8E-18 121.4 18.5 272 40-325 61-375 (394)
128 1dce_A Protein (RAB geranylger 99.6 2.7E-17 9.3E-22 150.3 -6.3 196 47-248 346-567 (567)
129 1w8a_A SLIT protein; signaling 99.5 5.6E-14 1.9E-18 110.6 12.6 87 119-205 52-138 (192)
130 2wfh_A SLIT homolog 2 protein 99.5 6.8E-14 2.3E-18 110.1 12.7 128 172-306 13-140 (193)
131 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 107.2 13.6 133 171-309 9-141 (177)
132 4b8c_D Glucose-repressible alc 99.5 3.2E-15 1.1E-19 140.8 4.3 179 74-257 173-357 (727)
133 2wfh_A SLIT homolog 2 protein 99.5 2E-13 6.9E-18 107.4 13.0 77 54-134 14-91 (193)
134 2o6r_A Variable lymphocyte rec 99.5 5.7E-13 2E-17 103.4 14.9 110 145-254 28-137 (177)
135 4gt6_A Cell surface protein; l 99.5 2.6E-12 8.8E-17 112.7 20.2 131 41-175 78-211 (394)
136 4gt6_A Cell surface protein; l 99.5 3E-12 1E-16 112.3 20.3 276 40-327 53-368 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 8.1E-14 2.8E-18 108.1 9.1 136 164-305 14-153 (176)
138 4fs7_A Uncharacterized protein 99.5 1.2E-12 4.3E-17 114.7 17.7 253 61-326 58-353 (394)
139 4b8c_D Glucose-repressible alc 99.5 8.6E-15 2.9E-19 137.9 4.0 191 50-251 173-369 (727)
140 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 5E-18 106.7 7.1 62 46-111 15-77 (176)
141 1ds9_A Outer arm dynein; leuci 99.4 2.8E-15 9.5E-20 118.7 -4.1 131 188-328 43-184 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 3.2E-15 1.1E-19 118.4 -7.0 131 26-160 19-155 (198)
143 3g39_A Variable lymphocyte rec 99.3 7.7E-12 2.6E-16 96.2 10.4 108 194-307 10-117 (170)
144 3un9_A NLR family member X1; l 99.3 3.9E-14 1.3E-18 122.9 -4.7 184 145-328 72-282 (372)
145 2r9u_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 94.4 10.6 106 195-306 14-119 (174)
146 4h09_A Hypothetical leucine ri 99.3 4.5E-10 1.5E-14 97.9 20.7 276 25-316 46-356 (379)
147 3un9_A NLR family member X1; l 99.3 3E-14 1E-18 123.6 -6.5 188 120-307 71-285 (372)
148 3g39_A Variable lymphocyte rec 99.3 5.2E-11 1.8E-15 91.5 12.3 104 148-254 12-115 (170)
149 2r9u_A Variable lymphocyte rec 99.2 9E-11 3.1E-15 90.5 12.2 104 148-254 15-118 (174)
150 4h09_A Hypothetical leucine ri 99.1 1.1E-08 3.7E-13 89.1 21.1 255 25-294 69-358 (379)
151 2ra8_A Uncharacterized protein 99.1 3.4E-11 1.2E-15 103.6 2.9 159 165-327 168-341 (362)
152 2ra8_A Uncharacterized protein 99.0 1.5E-10 5.1E-15 99.6 4.8 139 188-329 167-320 (362)
153 2ifg_A High affinity nerve gro 99.0 1.8E-09 6.1E-14 92.9 10.4 102 30-134 13-116 (347)
154 2ifg_A High affinity nerve gro 98.9 8.2E-09 2.8E-13 88.7 11.0 102 78-182 12-116 (347)
155 1io0_A Tropomodulin; LRR prote 98.8 1.5E-09 5.2E-14 84.4 1.4 115 214-328 33-163 (185)
156 3e4g_A ATP synthase subunit S, 98.6 1.4E-08 4.8E-13 77.2 3.0 100 217-319 61-170 (176)
157 3e4g_A ATP synthase subunit S, 98.5 2.1E-08 7.3E-13 76.2 1.4 82 194-278 62-149 (176)
158 1io0_A Tropomodulin; LRR prote 98.2 3.1E-07 1E-11 71.3 1.8 96 234-329 29-136 (185)
159 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.9E-10 65.8 5.8 80 239-322 168-257 (267)
160 3rw6_A Nuclear RNA export fact 97.9 1E-05 3.5E-10 66.1 5.1 80 47-128 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 7.5E-06 2.6E-10 63.3 2.0 59 268-326 98-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 4.4E-05 1.5E-09 59.1 2.1 91 236-326 36-136 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0021 7.4E-08 46.2 5.6 56 245-305 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.9 0.023 7.7E-07 40.7 6.7 37 218-254 32-68 (130)
165 2lz0_A Uncharacterized protein 82.3 1.6 5.6E-05 29.2 4.0 43 63-106 9-51 (100)
166 2lz0_A Uncharacterized protein 81.0 4.7 0.00016 26.9 5.9 44 40-84 10-53 (100)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.8e-37 Score=274.18 Aligned_cols=301 Identities=22% Similarity=0.238 Sum_probs=247.2
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCC-CCchhcCCCCCCcEEecCCcccccccCcccccCCCccEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFG-IIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFL 103 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 103 (329)
+++++|+++++.+.+ +++..+.++++|++|+++++.+.. ..+..|..+++|++|++++|++.+..+..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 468999999999984 444489999999999999998863 446678999999999999999987778899999999999
Q ss_pred EeecCcCCCCC-C--CCCCCCCccEEEccCCccccCCCcc-cCCCCCCcEEEccCceecccCCccccCC-----------
Q 046683 104 ILHSNKLNGSI-P--PLGNLNNLVKLFLLNNSLSGSIPPD-IGNLKSLSELDLSINQLSGSIPPSMGNL----------- 168 (329)
Q Consensus 104 ~l~~~~~~~~~-~--~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~----------- 168 (329)
++++|.+.+.. . .+..+++|++|++++|.+....+.. +..+++|++|++++|++....+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999987522 2 3788999999999999998776655 7899999999999999887666555443
Q ss_pred -----------------------CCccEEecCCcccCCCCCc-------------------------------------C
Q 046683 169 -----------------------SNLNRLFLYDNLLYGSIPP-------------------------------------N 188 (329)
Q Consensus 169 -----------------------~~L~~L~l~~~~~~~~~~~-------------------------------------~ 188 (329)
++|++|++++|.+.+..+. .
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 5677777777755321110 0
Q ss_pred cC--CCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccccc
Q 046683 189 VG--NLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICR 266 (329)
Q Consensus 189 ~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 266 (329)
+. ..++|+++++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~ 345 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE---N 345 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT---T
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc---C
Confidence 00 125788888888888877778888899999999999999877788888999999999999998765555544 5
Q ss_pred CCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 267 GGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 689999999999998887888999999999999999999877778899999999999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-36 Score=288.81 Aligned_cols=303 Identities=35% Similarity=0.550 Sum_probs=174.5
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCc-hhcCCCCCCcEEecCCcccccccCcccccCC-CccE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIP-PQIGNLSKLQLLSLHANAFSGKIPCEIFLLT-HLKF 102 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~ 102 (329)
+++++|++++|.+++.+|. .+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..|..+.+++ +|++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 5677888888777766555 67777777777777777764333 3467777777777777776666666665554 5666
Q ss_pred EEeecCcCCCCC---------------------------CCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCc
Q 046683 103 LILHSNKLNGSI---------------------------PPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSIN 155 (329)
Q Consensus 103 L~l~~~~~~~~~---------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 155 (329)
|++++|.+.+.. ..+..+++|++|++++|.+....+..+..+++|+.|++.+|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 665555443211 12334444555555555444444444445555555555555
Q ss_pred eecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCc
Q 046683 156 QLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPR 235 (329)
Q Consensus 156 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 235 (329)
.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 54444455555555555555555555555555555556666666666666555555556666666666666666555555
Q ss_pred cccCCCcccEEEccCCccCCCCCCcccc----------------------------------------------------
Q 046683 236 EIGNLRSLVQLALDQNQFTGFLPPSLGN---------------------------------------------------- 263 (329)
Q Consensus 236 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~---------------------------------------------------- 263 (329)
.+..+++|+.|++++|++.+..|..+..
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 6666666666666666554433322110
Q ss_pred ---------------cccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 264 ---------------ICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 264 ---------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..++++++|++|||++|++
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 11224455566666655555555555555555666666655555555555555555555555554
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-36 Score=285.68 Aligned_cols=302 Identities=36% Similarity=0.526 Sum_probs=252.5
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCC-------------------------chhcCC--CCCCc
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGII-------------------------PPQIGN--LSKLQ 77 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------~~~~~~--l~~L~ 77 (329)
+++++|++++|.+.|.+|...+..+++|++|++++|.+.... +..+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 356666666666655555434555666666666655544322 222222 56788
Q ss_pred EEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCce
Q 046683 78 LLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQ 156 (329)
Q Consensus 78 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 156 (329)
+|++++|.+.+..|..+.++++|++|++++|.+.+..+ .+..+++|+.|++++|.+....+..+..+++|++|++++|+
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 88888888887888889999999999999998875544 58889999999999999988888899999999999999999
Q ss_pred ecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcc
Q 046683 157 LSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPRE 236 (329)
Q Consensus 157 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 236 (329)
+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 99888999999999999999999999888888899999999999999998888888999999999999999887544432
Q ss_pred ----------------------------------------------------------------------ccCCCcccEE
Q 046683 237 ----------------------------------------------------------------------IGNLRSLVQL 246 (329)
Q Consensus 237 ----------------------------------------------------------------------~~~~~~L~~L 246 (329)
+..++.|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3345789999
Q ss_pred EccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCc
Q 046683 247 ALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRN 326 (329)
Q Consensus 247 ~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 326 (329)
++++|++.+..+..+. .+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..++.++.|++|++++|
T Consensus 638 dLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIG---SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp ECCSSCCBSCCCGGGG---GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred ECcCCcccccCCHHHh---ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 9999999988887765 5589999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 046683 327 NFY 329 (329)
Q Consensus 327 ~~~ 329 (329)
+++
T Consensus 715 ~l~ 717 (768)
T 3rgz_A 715 NLS 717 (768)
T ss_dssp EEE
T ss_pred ccc
Confidence 874
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=266.46 Aligned_cols=301 Identities=22% Similarity=0.156 Sum_probs=263.5
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+.++.|+++++.+.+ +++..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 368999999999984 5555899999999999999999988888999999999999999999855555788999999999
Q ss_pred eecCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCC
Q 046683 105 LHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 105 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
+++|.+....+ .+..+++|++|++++|.+....+..+..+++|++|++++|++....+..+..+++|+.|++++|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999877554 58899999999999999988888899999999999999999987766778899999999999999887
Q ss_pred CCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccc
Q 046683 184 SIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGN 263 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 263 (329)
..+..+..+++|++|++++|......+.......+|++|++++|.+++.....+..+++|+.|++++|++.+..+..+.
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~- 269 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH- 269 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT-
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc-
Confidence 7777788999999999999877655555555556999999999999965556888999999999999999865554443
Q ss_pred cccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 264 ICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 264 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
.+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus 270 --~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 270 --ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp --TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred --ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5689999999999999888889999999999999999999888888899999999999999863
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-35 Score=275.75 Aligned_cols=312 Identities=25% Similarity=0.326 Sum_probs=205.7
Q ss_pred ccCCCCcee---cceeecCCCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCcc----------------------
Q 046683 8 SSKIRPCAW---SGISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNEL---------------------- 62 (329)
Q Consensus 8 ~~~~~~~~~---~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------- 62 (329)
...+++|.| .|..|...++|+.|+++++.+.|.+|+ .+.++++|++|++++|.+
T Consensus 61 ~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~ 139 (636)
T 4eco_A 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139 (636)
T ss_dssp CCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHH
T ss_pred CCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHhcCccceEEECcCCccccCCccccccccccCchHHHHH
Confidence 346789999 999998888999999999999999987 999999999999998843
Q ss_pred --------------------------------------------------------CCCCchhcCCCCCCcEEecCCccc
Q 046683 63 --------------------------------------------------------FGIIPPQIGNLSKLQLLSLHANAF 86 (329)
Q Consensus 63 --------------------------------------------------------~~~~~~~~~~l~~L~~L~l~~~~i 86 (329)
++ ++..+.++++|++|++++|.+
T Consensus 140 ~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l 218 (636)
T 4eco_A 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218 (636)
T ss_dssp HHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC
T ss_pred HHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc
Confidence 12 445677889999999999998
Q ss_pred ccc-----------------cCcccc--cCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCc-ccc-CCCcccCCC
Q 046683 87 SGK-----------------IPCEIF--LLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNS-LSG-SIPPDIGNL 144 (329)
Q Consensus 87 ~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~ 144 (329)
++. .|..+. ++++|++|++++|.+.+..+ .+..+++|++|++++|. +.. ..|..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 864 888888 99999999999998766444 57788888888888887 654 344444333
Q ss_pred ------CCCcEEEccCceecccCCc--cccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCC
Q 046683 145 ------KSLSELDLSINQLSGSIPP--SMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNL 216 (329)
Q Consensus 145 ------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 216 (329)
++|++|++++|+++ ..|. .+..+++|++|++++|.+.+.++ .+..+++|++|++++|.+. ..+..+..+
T Consensus 299 ~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 375 (636)
T 4eco_A 299 ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGF 375 (636)
T ss_dssp HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEE
T ss_pred hccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhh
Confidence 56666666666655 4554 55566666666666665553333 3444444444444444444 233333444
Q ss_pred C--------------------------CCcEEEccCccccCCCCcccc-------CCCcccEEEccCCccCCCCCCcccc
Q 046683 217 T--------------------------NLIQLFLSFNNLSGSIPREIG-------NLRSLVQLALDQNQFTGFLPPSLGN 263 (329)
Q Consensus 217 ~--------------------------~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~l~~ 263 (329)
+ +|+.|++++|.+++..+..+. .+++|++|++++|.+.. .+..+
T Consensus 376 ~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~-- 452 (636)
T 4eco_A 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKEL-- 452 (636)
T ss_dssp CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHH--
T ss_pred cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHH--
Confidence 4 444455555544444444343 44455555555555542 12111
Q ss_pred cccCCCceEEeccCCcccccCCc-ccccC-------CCccEEEecCCccccchhhhhh--hcCCCcEEEcCCcccC
Q 046683 264 ICRGGALQYFGVSENHFQGTIPK-SLKYC-------TSLFRVRVDGNNLTGNISQALG--IYHNLTFIDLSRNNFY 329 (329)
Q Consensus 264 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~-------~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~ 329 (329)
+..+++|++|++++|.+. .++. .+... ++|+.|++++|+++ .+|..+. .+++|+.|+|++|+|+
T Consensus 453 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 453 FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC
Confidence 123466777777777666 3333 22222 27778888888777 5666665 7788888888888764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-33 Score=261.50 Aligned_cols=298 Identities=22% Similarity=0.212 Sum_probs=263.0
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
.+++++++++.+. .+++..|..+++|++|+++++.++ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 6899999999997 566658999999999999999988 45567889999999999999999777788999999999999
Q ss_pred ecCcCCCCCC--CCCCCCCccEEEccCCccccCC--CcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCccc
Q 046683 106 HSNKLNGSIP--PLGNLNNLVKLFLLNNSLSGSI--PPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLL 181 (329)
Q Consensus 106 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 181 (329)
++|.+....+ .+..+++|++|++++|.+.... +..+..+++|++|++++|++.+..+..+..+++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 9998764333 3789999999999999987654 67889999999999999999888888999999999999999998
Q ss_pred CCCCCc-CcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccC---CCCccccCCCcccEEEccCCccCCCC
Q 046683 182 YGSIPP-NVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSG---SIPREIGNLRSLVQLALDQNQFTGFL 257 (329)
Q Consensus 182 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~ 257 (329)
.+..+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|++.+..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 765443 47889999999999999988888889999999999999999875 23356889999999999999998766
Q ss_pred CCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 258 PPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 258 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+..+. .+++|++|++++|++.+..+..+..++.| .|++++|++++..+..+..+++|++|++++|+++
T Consensus 493 ~~~~~---~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 493 QHAFT---SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TTTTT---TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred hhhhc---cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 66554 56899999999999998889999999999 9999999999999999999999999999999873
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=254.58 Aligned_cols=295 Identities=20% Similarity=0.160 Sum_probs=258.5
Q ss_pred eEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeec
Q 046683 28 INISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHS 107 (329)
Q Consensus 28 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 107 (329)
+.++.++..++ .+|. .+ .+++++|+++++.++...+..|..+++|++|++++|.+.+..+.+|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 46777777775 5655 22 35899999999999988888899999999999999999977788999999999999999
Q ss_pred CcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCC
Q 046683 108 NKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIP 186 (329)
Q Consensus 108 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 186 (329)
|.+....+. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 999877664 7889999999999999988888899999999999999999988888899999999999999999987665
Q ss_pred cCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccccc
Q 046683 187 PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICR 266 (329)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 266 (329)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.......+|++|++++|.+.......+ ..
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~ 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV---RH 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH---TT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh---cC
Confidence 667889999999999999987777788999999999999988766666555566799999999999985433333 46
Q ss_pred CCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 267 GGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|+|++|+|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 689999999999998777788899999999999999999988999999999999999999875
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-33 Score=260.75 Aligned_cols=298 Identities=19% Similarity=0.255 Sum_probs=203.0
Q ss_pred CCCeeEEeecCCCCcCc-----------------cCCcccc--cCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCc
Q 046683 24 AGRVINISLTNTGLSGT-----------------LHDFSFS--LFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN 84 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 84 (329)
.+++++|++++|.+++. +|+ .+. ++++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 35799999999999875 777 777 9999999999999988888888999999999999999
Q ss_pred c-ccc-ccCcccccC------CCccEEEeecCcCCCCCC--CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccC
Q 046683 85 A-FSG-KIPCEIFLL------THLKFLILHSNKLNGSIP--PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSI 154 (329)
Q Consensus 85 ~-i~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 154 (329)
+ +++ ..|..+..+ ++|++|++++|.+...+. .+..+++|++|++++|.+....+ .+..+++|++|++++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 8 876 677777665 889999999988885555 57888888888888888775555 667777777777777
Q ss_pred ceecccCCccccCCCC-ccEEecCCcccCCCCCcCcCCCC--CccEEEccCCcCCCCCCcccc-------CCCCCcEEEc
Q 046683 155 NQLSGSIPPSMGNLSN-LNRLFLYDNLLYGSIPPNVGNLK--SLLVLQLDENQLSGCIPRSFG-------NLTNLIQLFL 224 (329)
Q Consensus 155 ~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l 224 (329)
|++. ..|..+..+++ |++|++++|.+. .++..+...+ +|++|++++|.+.+..+..+. .+++|+.|++
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 7776 55666767776 777777777666 4444443332 566666666655544444444 3445555555
Q ss_pred cCccccCCCCccccCCC-------------------------------cccEEEccCCccCCCCCCcccccccCCCceEE
Q 046683 225 SFNNLSGSIPREIGNLR-------------------------------SLVQLALDQNQFTGFLPPSLGNICRGGALQYF 273 (329)
Q Consensus 225 ~~~~~~~~~~~~~~~~~-------------------------------~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L 273 (329)
++|.++......+..++ +|+.|++++|++. ..+..+. ...+++|++|
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L 518 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR-ATTLPYLVGI 518 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS-TTTCTTCCEE
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh-hccCCCcCEE
Confidence 55544422222333344 4555555555544 2222211 0144667777
Q ss_pred eccCCcccccCCcccccCCCccEEEe------cCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 274 GVSENHFQGTIPKSLKYCTSLFRVRV------DGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
++++|++.+ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|+|
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 777776664 5666666777777777 34566666677777777777777777765
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-33 Score=268.16 Aligned_cols=305 Identities=23% Similarity=0.275 Sum_probs=225.7
Q ss_pred cceeecCCCCeeEEeecCCCCcCccCCcccccCCceeEEee-cCCccCCC------------------------------
Q 046683 17 SGISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDL-SFNELFGI------------------------------ 65 (329)
Q Consensus 17 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~------------------------------ 65 (329)
.|..|...++++.|+|+++.+.|.+|+ .+.++++|++|++ +.+.+.+.
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CceEecCCCCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 999999878999999999999999987 9999999999999 55532211
Q ss_pred ----------------------------------------------CchhcCCCCCCcEEecCCccccc-----------
Q 046683 66 ----------------------------------------------IPPQIGNLSKLQLLSLHANAFSG----------- 88 (329)
Q Consensus 66 ----------------------------------------------~~~~~~~l~~L~~L~l~~~~i~~----------- 88 (329)
++..+..+++|++|++++|.+++
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence 44567889999999999999986
Q ss_pred ------ccCcccc--cCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCc-ccc-CCCcc-------cCCCCCCcEE
Q 046683 89 ------KIPCEIF--LLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNS-LSG-SIPPD-------IGNLKSLSEL 150 (329)
Q Consensus 89 ------~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~-~~~~~-------~~~~~~L~~L 150 (329)
.+|..+. ++++|++|++++|.+.+..+ .+..+++|+.|++++|. +.. ..|.. +..+++|++|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 2788877 99999999999998766555 58889999999999997 654 34443 3455689999
Q ss_pred EccCceecccCCc--cccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCC-CcEEEccCc
Q 046683 151 DLSINQLSGSIPP--SMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTN-LIQLFLSFN 227 (329)
Q Consensus 151 ~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 227 (329)
++++|++. .+|. .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 99998888 6777 7888889999999888887 555 6788888888888888887 56666777777 888888888
Q ss_pred cccCCCCccccCCC--cccEEEccCCccCCCCCCcccc--------------------------cccCCCceEEeccCCc
Q 046683 228 NLSGSIPREIGNLR--SLVQLALDQNQFTGFLPPSLGN--------------------------ICRGGALQYFGVSENH 279 (329)
Q Consensus 228 ~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~l~~--------------------------~~~~~~L~~L~l~~~~ 279 (329)
.++ ..+..+..++ +|+.|++++|++.+..+..... +..+++|+.|++++|.
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 887 5555555443 3777777777776433221101 1133556666666665
Q ss_pred ccccCCcccc--------cCCCccEEEecCCccccchhhhhh--hcCCCcEEEcCCcccC
Q 046683 280 FQGTIPKSLK--------YCTSLFRVRVDGNNLTGNISQALG--IYHNLTFIDLSRNNFY 329 (329)
Q Consensus 280 ~~~~~~~~~~--------~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~ 329 (329)
+. .+|.... ++++|+.|++++|++. .+|..+. .+++|+.|+|++|+|+
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~ 766 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS 766 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC
Confidence 55 3333222 1226777777777777 5566665 7777777777777764
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.9e-33 Score=257.48 Aligned_cols=301 Identities=26% Similarity=0.253 Sum_probs=181.6
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++|+++++.+. .+++..|.++++|++|++++|.++...+..|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 35777777777776 34444677777777777777777766666677777777777777777655566677777777777
Q ss_pred eecCcCCCCC-CCCCCCCCccEEEccCCcccc-CCCcccCCCCCCcEEEccCceecccCCcc------------------
Q 046683 105 LHSNKLNGSI-PPLGNLNNLVKLFLLNNSLSG-SIPPDIGNLKSLSELDLSINQLSGSIPPS------------------ 164 (329)
Q Consensus 105 l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------ 164 (329)
+++|.+.... ..+..+++|++|++++|.+.. ..|..+..+++|++|++++|++....+..
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 7777665544 245666666666666665543 23555555555555555555433211110
Q ss_pred --------------------------------------------------------------------------------
Q 046683 165 -------------------------------------------------------------------------------- 164 (329)
Q Consensus 165 -------------------------------------------------------------------------------- 164 (329)
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence
Q ss_pred ---------------------------------------------------------------------------ccCCC
Q 046683 165 ---------------------------------------------------------------------------MGNLS 169 (329)
Q Consensus 165 ---------------------------------------------------------------------------l~~~~ 169 (329)
+..++
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred cccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCC
Confidence 01122
Q ss_pred CccEEecCCcccCCC-------------------------CCcCcCCCCCccEEEccCCcCCCCCC-ccccCCCCCcEEE
Q 046683 170 NLNRLFLYDNLLYGS-------------------------IPPNVGNLKSLLVLQLDENQLSGCIP-RSFGNLTNLIQLF 223 (329)
Q Consensus 170 ~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~ 223 (329)
+|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|+
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 333333333332211 11223334444455555544443333 3455556666666
Q ss_pred ccCccccCCCCccccCCCcccEEEccCCccCCC-CCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCC
Q 046683 224 LSFNNLSGSIPREIGNLRSLVQLALDQNQFTGF-LPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGN 302 (329)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 302 (329)
+++|.+++..+..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF---ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh---ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 666666555555566666666666666666542 23333 34577777888877777666777777788888888888
Q ss_pred ccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 303 NLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 303 ~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
++++..|..++.+++|++|++++|+|+
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 887777777777888888888887764
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-32 Score=237.29 Aligned_cols=263 Identities=24% Similarity=0.312 Sum_probs=153.2
Q ss_pred cccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccE
Q 046683 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVK 125 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 125 (329)
+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+ .+. +..+++|++|++++|......+.+..+++|++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 44444444444444444332 234444444444444444431 111 33444444444444433333333444555555
Q ss_pred EEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcC
Q 046683 126 LFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQL 205 (329)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (329)
|+++++.+....+ +..+++|++|++++|.+....+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+
T Consensus 160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc
Confidence 5555554432222 4455556666666555543222 4555666666666665553322 55667777777777777
Q ss_pred CCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCC
Q 046683 206 SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIP 285 (329)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~ 285 (329)
....+ +..+++|++|++++|.+++. ..+..+++|++|++++|++.+. ..+..+++|++|++++|.+.+..+
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-----SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred CCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-----hhhcCCCCCCEEECcCCcCCCcCh
Confidence 64433 66777788888877777632 4566777888888888877642 224456788888888888776666
Q ss_pred cccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 286 KSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
..+..+++|+.|++++|++++..+ ++.+++|++|++++|+|+
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 777778888888888888876655 777888888888888774
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-33 Score=239.65 Aligned_cols=264 Identities=29% Similarity=0.462 Sum_probs=220.7
Q ss_pred cCCCCce--ecceeecCC---CCeeEEeecCCCCcC--ccCCcccccCCceeEEeecC-CccCCCCchhcCCCCCCcEEe
Q 046683 9 SKIRPCA--WSGISCNDA---GRVINISLTNTGLSG--TLHDFSFSLFPHLAYLDLSF-NELFGIIPPQIGNLSKLQLLS 80 (329)
Q Consensus 9 ~~~~~~~--~~~~~~~~~---~~l~~l~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 80 (329)
..+++|. |.|..|... +++++|+++++.+.+ .+++ .+..+++|++|++++ +.+....+..+..+++|++|+
T Consensus 29 ~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE
T ss_pred CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEE
Confidence 3568898 999999865 689999999999998 7777 899999999999995 888888888899999999999
Q ss_pred cCCcccccccCcccccCCCccEEEeecCcCCCCC-CCCCCCCCccEEEccCCccccCCCcccCCCC-CCcEEEccCceec
Q 046683 81 LHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSI-PPLGNLNNLVKLFLLNNSLSGSIPPDIGNLK-SLSELDLSINQLS 158 (329)
Q Consensus 81 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 158 (329)
+++|.+.+..|..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+....+..+..++ +|++|++++|++.
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 9999998888999999999999999999988544 4578899999999999988877788888887 8999999999988
Q ss_pred ccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcccc
Q 046683 159 GSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIG 238 (329)
Q Consensus 159 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 238 (329)
+..|..+..++ |++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..+..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 77888887776 88999988888777777778888888888888888755444 66778888888888888777777788
Q ss_pred CCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCc
Q 046683 239 NLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENH 279 (329)
Q Consensus 239 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~ 279 (329)
.+++|++|++++|++.+..+.. ..+++|+.+++++|.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~----~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSAYANNK 302 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS----TTGGGSCGGGTCSSS
T ss_pred cCcCCCEEECcCCcccccCCCC----ccccccChHHhcCCC
Confidence 8888888888888887655543 344677777777775
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-32 Score=252.67 Aligned_cols=277 Identities=25% Similarity=0.234 Sum_probs=207.5
Q ss_pred ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEcc
Q 046683 51 HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLL 129 (329)
Q Consensus 51 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 129 (329)
+|++|+++++.+....+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+....+ .+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4555555555555555555666777777777777776 566667777777777777777665433 46677777777777
Q ss_pred CCcccc-CCCcccCCCCCCcEEEccCceecccC--CccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCC
Q 046683 130 NNSLSG-SIPPDIGNLKSLSELDLSINQLSGSI--PPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLS 206 (329)
Q Consensus 130 ~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 206 (329)
+|.+.. ..+..+..+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 776653 33344777788888888888776544 567777888888888888777666667778888888888888877
Q ss_pred CCCC-ccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCC
Q 046683 207 GCIP-RSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIP 285 (329)
Q Consensus 207 ~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~ 285 (329)
+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+........+..+++|++|++++|.+.+..+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 5543 347778888889988888887777788888899999999988865322222334566889999999998887778
Q ss_pred cccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 286 KSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
..+..+++|+.|++++|++++..+..+..+++| +|++++|+|+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 888889999999999999998888899999999 9999999875
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=240.87 Aligned_cols=288 Identities=21% Similarity=0.212 Sum_probs=219.5
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
++++.++++++.+. .+|+..+..+++|++|+++++.+....+..+..+++|++|++++|.+.+..+..+.++++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56889999999886 67776789999999999999999887778899999999999999999977777889999999999
Q ss_pred eecCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCC
Q 046683 105 LHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 105 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
+++|.+...++. +..+++|++|++++|.+....+..+..+++|++|++++|+++.. .+..+++|+.|+++++.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999999877665 58899999999999999877788899999999999999988754 23445556665555554432
Q ss_pred C------------------CCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccE
Q 046683 184 S------------------IPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQ 245 (329)
Q Consensus 184 ~------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 245 (329)
. .+. ...++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 1 111 1235677777777776643 35666777888888887777666677777778888
Q ss_pred EEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCC
Q 046683 246 LALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSR 325 (329)
Q Consensus 246 L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 325 (329)
|++++|++.+. +..+ ..+++|++|++++|.+. .++..+..+++|+.|++++|++++. + +..+++|+.|++++
T Consensus 277 L~L~~n~l~~~-~~~~---~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 277 LYISNNRLVAL-NLYG---QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH 348 (390)
T ss_dssp EECCSSCCCEE-ECSS---SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred EECCCCcCccc-Cccc---CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCC
Confidence 88888777632 2222 24567888888888776 4555566677888888888877744 2 56677888888888
Q ss_pred ccc
Q 046683 326 NNF 328 (329)
Q Consensus 326 n~~ 328 (329)
|++
T Consensus 349 N~~ 351 (390)
T 3o6n_A 349 NDW 351 (390)
T ss_dssp SCE
T ss_pred CCc
Confidence 876
No 15
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-31 Score=230.90 Aligned_cols=282 Identities=24% Similarity=0.350 Sum_probs=240.2
Q ss_pred CCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEE
Q 046683 24 AGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFL 103 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 103 (329)
.+++++|+++++.+. .++ .+..+++|++|++++|.++.... +..+++|++|++++|.+.+ . ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred cccccEEEEeCCccc-cch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 457999999999886 454 38889999999999999886543 8899999999999999873 3 468899999999
Q ss_pred EeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCC
Q 046683 104 ILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
++++|.+....+ +..+++|++|++++|..... ...+..+++|++|++.++.+....+ +..+++|++|++++|.+.+
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999886544 88999999999999965533 3448899999999999998875433 7889999999999999875
Q ss_pred CCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccc
Q 046683 184 SIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGN 263 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 263 (329)
..+ +..+++|+.+++++|.+....+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+... ..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----~~ 260 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-----NA 260 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----GG
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-----hh
Confidence 432 7888999999999999885543 7788999999999999984433 88999999999999998743 23
Q ss_pred cccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 264 ICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 264 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..+..++.+++|++|++++|+++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 55678999999999998754 45788999999999999999999999999999999999999985
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-32 Score=247.02 Aligned_cols=283 Identities=21% Similarity=0.233 Sum_probs=238.9
Q ss_pred CCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCc--ccccCCCcc
Q 046683 24 AGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPC--EIFLLTHLK 101 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~--~~~~~~~L~ 101 (329)
.+++++|+++++.+.+.+++..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+. .+..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 457999999999988778777899999999999999999888788899999999999999998864444 388899999
Q ss_pred EEEeecCcCCCCCCC--CCCCCCccEEEccCCccccCCCcccCC----------------------------------CC
Q 046683 102 FLILHSNKLNGSIPP--LGNLNNLVKLFLLNNSLSGSIPPDIGN----------------------------------LK 145 (329)
Q Consensus 102 ~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------------------------~~ 145 (329)
+|++++|.+....+. +..+++|++|++++|.+....+..+.. ++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 999999999877554 788999999999999887655544433 36
Q ss_pred CCcEEEccCceecccCCcccc---------------------------------------CCCCccEEecCCcccCCCCC
Q 046683 146 SLSELDLSINQLSGSIPPSMG---------------------------------------NLSNLNRLFLYDNLLYGSIP 186 (329)
Q Consensus 146 ~L~~L~l~~~~~~~~~~~~l~---------------------------------------~~~~L~~L~l~~~~~~~~~~ 186 (329)
+|++|++++|++.+..+..+. ..++|++|++++|.+.+..+
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 788888888876533222111 12589999999999987778
Q ss_pred cCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccccc
Q 046683 187 PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICR 266 (329)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 266 (329)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+. .
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~ 369 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL---G 369 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT---T
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc---c
Confidence 8889999999999999999987788899999999999999999877788899999999999999999866665554 5
Q ss_pred CCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchh
Q 046683 267 GGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNIS 309 (329)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 309 (329)
+++|++|++++|++.+..+..+..+++|+.|++++|++.+..|
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6899999999999997666778899999999999999998765
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=260.04 Aligned_cols=302 Identities=22% Similarity=0.205 Sum_probs=226.3
Q ss_pred CCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccC-CCCchhcCCCCCCcEEecCCcccccccCcccccCCCccE
Q 046683 24 AGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELF-GIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKF 102 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 102 (329)
-+++++|++++|.+++ +.+..|.++++|++|++++|... ...+..|.++++|++|++++|.+.+..|..|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3579999999999974 44448999999999999999544 344678999999999999999999777889999999999
Q ss_pred EEeecCcCCCCCC-C--CCCCCCccEEEccCCccccCCC-cccCCCCCCcEEEccCceecccCCccccCC--CCccEEec
Q 046683 103 LILHSNKLNGSIP-P--LGNLNNLVKLFLLNNSLSGSIP-PDIGNLKSLSELDLSINQLSGSIPPSMGNL--SNLNRLFL 176 (329)
Q Consensus 103 L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l 176 (329)
|++++|.+.+..+ . +..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 9999999876332 2 8899999999999999876544 578999999999999999887777777666 77888888
Q ss_pred CCcccCCCCCcCcCCCCC------ccEEEccCCcCCCCCCccc------------------------------------c
Q 046683 177 YDNLLYGSIPPNVGNLKS------LLVLQLDENQLSGCIPRSF------------------------------------G 214 (329)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~l------------------------------------~ 214 (329)
++|.+....+..+..+++ |++|++++|.+....+..+ .
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 888776655554444443 7777777775442222111 1
Q ss_pred C--CCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCC
Q 046683 215 N--LTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCT 292 (329)
Q Consensus 215 ~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 292 (329)
. .++|+.|++++|.+.+..+..|..+++|+.|++++|++.+..+..+. .+++|++|++++|.+.+..+..+..++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY---GLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT---TCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc---CCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 1 25677777777777666666777777777777777777655444443 446777777777777666666777777
Q ss_pred CccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 293 SLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 293 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+|+.|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 7777777777777666666777777777777777653
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.4e-31 Score=227.18 Aligned_cols=289 Identities=22% Similarity=0.230 Sum_probs=242.4
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
+++.++++++.+. .+|. .+ .+++++|+++++.++......+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5788899988876 5655 22 368999999999999888778999999999999999999777889999999999999
Q ss_pred ecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecc--cCCccccCCCCccEEecCCcccCC
Q 046683 106 HSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSG--SIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 106 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
++|.+...+..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 9999886555443 799999999999987777788999999999999998864 567788899999999999999875
Q ss_pred CCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccc
Q 046683 184 SIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGN 263 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 263 (329)
.+..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++. ..+..+
T Consensus 186 -l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-- 259 (330)
T 1xku_A 186 -IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL-- 259 (330)
T ss_dssp -CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT--
T ss_pred -CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh--
Confidence 34333 279999999999998777888999999999999999998777778899999999999999998 445544
Q ss_pred cccCCCceEEeccCCcccccCCccccc------CCCccEEEecCCcccc--chhhhhhhcCCCcEEEcCCcc
Q 046683 264 ICRGGALQYFGVSENHFQGTIPKSLKY------CTSLFRVRVDGNNLTG--NISQALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 264 ~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~n~ 327 (329)
..+++|++|++++|.+.+..+..+.. .+.++.+++.+|++.. ..+..+..+++++.++|++|+
T Consensus 260 -~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 -ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 45689999999999998665555532 4788999999999864 567889999999999999985
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.7e-32 Score=245.33 Aligned_cols=157 Identities=25% Similarity=0.267 Sum_probs=104.4
Q ss_pred CCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCC--CCCccccCCCCCcEEEccCccccCCCCc-cccCCCcc
Q 046683 167 NLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSG--CIPRSFGNLTNLIQLFLSFNNLSGSIPR-EIGNLRSL 243 (329)
Q Consensus 167 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L 243 (329)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|+.|++++|.+++..+. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 44556666666666655455555666666666666666653 2234455666666666666666642332 35566667
Q ss_pred cEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEc
Q 046683 244 VQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDL 323 (329)
Q Consensus 244 ~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 323 (329)
++|++++|++.+..+..+. ++|++|++++|++. .+|..+..+++|+.|++++|++++..+..+..+++|++|++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~-----~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP-----PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC-----TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECcCCCCCcchhhhhc-----ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence 7777777666543333221 68888888888887 67776668899999999999998543334888899999999
Q ss_pred CCcccC
Q 046683 324 SRNNFY 329 (329)
Q Consensus 324 ~~n~~~ 329 (329)
++|+++
T Consensus 476 ~~N~~~ 481 (520)
T 2z7x_B 476 HTNPWD 481 (520)
T ss_dssp CSSCBC
T ss_pred cCCCCc
Confidence 999874
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.8e-31 Score=228.57 Aligned_cols=288 Identities=20% Similarity=0.216 Sum_probs=242.9
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
+++.++++++.+. .+|. .+ .+++++|+++++.+....+..+..+++|++|++++|++.+..+..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5788999998886 6665 33 378999999999999877788999999999999999999777889999999999999
Q ss_pred ecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecc--cCCccccCCCCccEEecCCcccCC
Q 046683 106 HSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSG--SIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 106 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
++|.+...+..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+.+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9999886655444 899999999999987777789999999999999999863 566777777 99999999999885
Q ss_pred CCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccc
Q 046683 184 SIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGN 263 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 263 (329)
.+..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++. ..+..+
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-- 260 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-- 260 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG--
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh--
Confidence 443333 79999999999999877788999999999999999999777778999999999999999998 455544
Q ss_pred cccCCCceEEeccCCcccccCCccccc------CCCccEEEecCCccc--cchhhhhhhcCCCcEEEcCCcc
Q 046683 264 ICRGGALQYFGVSENHFQGTIPKSLKY------CTSLFRVRVDGNNLT--GNISQALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 264 ~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~ 327 (329)
..+++|++|++++|.+.+..+..+.. .+.|+.|++.+|++. +..+.++..+++|+.+++++|+
T Consensus 261 -~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 -PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 45689999999999998666555543 467899999999987 5778889999999999999985
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-31 Score=248.86 Aligned_cols=180 Identities=21% Similarity=0.181 Sum_probs=149.8
Q ss_pred CCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCC-cCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEE
Q 046683 145 KSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIP-PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLF 223 (329)
Q Consensus 145 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 223 (329)
++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 334444444443332 34567778889999999998876655 5678899999999999999888888899999999999
Q ss_pred ccCccccC-CCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCC
Q 046683 224 LSFNNLSG-SIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGN 302 (329)
Q Consensus 224 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 302 (329)
+++|.+++ ..+..+..+++|+.|++++|++.+..+..+. .+++|++|++++|++.+..|..+..+++|+.|++++|
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD---TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT---TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc---ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 99999986 3677889999999999999999876665554 5689999999999999888899999999999999999
Q ss_pred ccccchhhhhhhcC-CCcEEEcCCcccC
Q 046683 303 NLTGNISQALGIYH-NLTFIDLSRNNFY 329 (329)
Q Consensus 303 ~l~~~~~~~~~~~~-~L~~L~l~~n~~~ 329 (329)
+++ .+|..+..++ +|++|++++|+++
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred cCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence 999 6677788887 6999999999874
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-31 Score=244.80 Aligned_cols=295 Identities=22% Similarity=0.241 Sum_probs=194.1
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++|++++|.+. .+++..|..+++|++|++++|.++...+..|..+++|++|++++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 46788888888887 444447888888888888888888777777888888888888888777 45544 677777777
Q ss_pred eecCcCCCCC--CCCCCCCCccEEEccCCccccCCCcccCCC--------------------------------------
Q 046683 105 LHSNKLNGSI--PPLGNLNNLVKLFLLNNSLSGSIPPDIGNL-------------------------------------- 144 (329)
Q Consensus 105 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------------------------- 144 (329)
+++|.+.... ..+..+++|++|+++++.+.......+..+
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 7777776533 346667777777777665542111111111
Q ss_pred --------------------------------------------------------------------CCCcEEEccCce
Q 046683 145 --------------------------------------------------------------------KSLSELDLSINQ 156 (329)
Q Consensus 145 --------------------------------------------------------------------~~L~~L~l~~~~ 156 (329)
++|++|++++|.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 134444444444
Q ss_pred ecccCCccc-----------------------------------------------------cCCCCccEEecCCcccCC
Q 046683 157 LSGSIPPSM-----------------------------------------------------GNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 157 ~~~~~~~~l-----------------------------------------------------~~~~~L~~L~l~~~~~~~ 183 (329)
+.+..|..+ ..+++|++|++++|.+.+
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence 443333322 345566666666666665
Q ss_pred CCCcCcCCCCCccEEEccCCcCCCCC--CccccCCCCCcEEEccCccccCCCC-ccccCCCcccEEEccCCccCCCCCCc
Q 046683 184 SIPPNVGNLKSLLVLQLDENQLSGCI--PRSFGNLTNLIQLFLSFNNLSGSIP-REIGNLRSLVQLALDQNQFTGFLPPS 260 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~ 260 (329)
..+..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+..+..
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 55555666667777777776666422 2345666677777777777665233 34666677777777777765433332
Q ss_pred ccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 261 LGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 261 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+. ++|++|++++|++. .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus 448 l~-----~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 448 LP-----PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CC-----TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred hc-----CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 21 58888999988887 56665668899999999999998433334888999999999999874
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-32 Score=249.59 Aligned_cols=131 Identities=31% Similarity=0.378 Sum_probs=87.4
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
++++|+++++.++ .+++..|..+++|++|++++|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5777788877776 344446777777777777777777666666777777777777777776555566677777777777
Q ss_pred ecCcCCCCCC-CCCCCCCccEEEccCCcccc-CCCcccCCCCCCcEEEccCcee
Q 046683 106 HSNKLNGSIP-PLGNLNNLVKLFLLNNSLSG-SIPPDIGNLKSLSELDLSINQL 157 (329)
Q Consensus 106 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 157 (329)
+++.+....+ .+..+++|++|++++|.+.. ..|..+..+++|++|++++|++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 7776665444 35666666666666666554 2355566666666666655543
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.1e-31 Score=248.07 Aligned_cols=299 Identities=22% Similarity=0.271 Sum_probs=151.3
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCccccc-----ccC----ccccc
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSG-----KIP----CEIFL 96 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-----~~~----~~~~~ 96 (329)
++++|++++|.+.+ +++..+..+++|++|++++|.+....+..+..+++|++|+++++...+ .+| ..+..
T Consensus 249 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 249 NLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 37777777777663 333366777777777777776665544444444444444444332110 011 13334
Q ss_pred CCCccEEEeecCcCCCCCCC-CCCCCCcc----------------------------EEEccCCccccCCCcccCCCCCC
Q 046683 97 LTHLKFLILHSNKLNGSIPP-LGNLNNLV----------------------------KLFLLNNSLSGSIPPDIGNLKSL 147 (329)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~----------------------------~L~l~~~~~~~~~~~~~~~~~~L 147 (329)
+++|++|++++|.+....+. +..+++|+ .|++++|.+....+..+..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 44455555544444433221 33333333 33333343433344455555666
Q ss_pred cEEEccCceecccCC-ccccCCCCccEEecCCcccCCCCCc--------------------------CcCCCCCccEEEc
Q 046683 148 SELDLSINQLSGSIP-PSMGNLSNLNRLFLYDNLLYGSIPP--------------------------NVGNLKSLLVLQL 200 (329)
Q Consensus 148 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~--------------------------~~~~~~~L~~L~l 200 (329)
+.|++++|++.+..+ ..+..+++|++|++++|.+.+..+. .+..+++|++|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 666666665543322 3445555555555555554433333 3444455555555
Q ss_pred cCCcCCCCCCccccCCCCCcEEEccCccccCCC--------CccccCCCcccEEEccCCccCCCCCCcccccccCCCceE
Q 046683 201 DENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSI--------PREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQY 272 (329)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~ 272 (329)
++|.+....+..+..+++|++|++++|.+++.. ...+..+++|+.|++++|++.......+ ..+++|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~---~~l~~L~~ 564 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF---KDLFELKI 564 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCE
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc---ccccCcce
Confidence 555554444444455555555555555444211 1124445555555555555542222222 23456666
Q ss_pred EeccCCcccccCCcccccCCCccEEEecCCccccchhhhhh-hcCCCcEEEcCCccc
Q 046683 273 FGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALG-IYHNLTFIDLSRNNF 328 (329)
Q Consensus 273 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~ 328 (329)
|++++|++.+..+..+..+++|+.|++++|++++..+..+. .+++|+.|++++|++
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 66666666544444455666666666666666655555555 566666666666654
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-32 Score=249.21 Aligned_cols=138 Identities=22% Similarity=0.252 Sum_probs=102.4
Q ss_pred cCCCCCccEEEccCCcCCCCCC-ccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccC-CCCCCccccccc
Q 046683 189 VGNLKSLLVLQLDENQLSGCIP-RSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFT-GFLPPSLGNICR 266 (329)
Q Consensus 189 ~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~ 266 (329)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..+..+ ..
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~---~~ 468 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---TE 468 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC---TT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh---hc
Confidence 4455666666666666554433 34666777777777777777666677777788888888888775 2334333 35
Q ss_pred CCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 267 GGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+++|++|++++|++.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 578888888888888777888888888999999999888877778888889999999988874
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-31 Score=254.80 Aligned_cols=297 Identities=18% Similarity=0.211 Sum_probs=188.5
Q ss_pred CCCeeEEeecCCCCcC-----------------ccCCcccc--cCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCc
Q 046683 24 AGRVINISLTNTGLSG-----------------TLHDFSFS--LFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN 84 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~-----------------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 84 (329)
.+++++|++++|.+++ .+|+ .+. ++++|++|++++|.+....+..+.++++|+.|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 3578899999999887 2666 544 8999999999999888778888888899999999888
Q ss_pred c-ccc-ccCcccccC-------CCccEEEeecCcCCCCCC--CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEcc
Q 046683 85 A-FSG-KIPCEIFLL-------THLKFLILHSNKLNGSIP--PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLS 153 (329)
Q Consensus 85 ~-i~~-~~~~~~~~~-------~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 153 (329)
+ +++ ..|..+.++ ++|++|++++|.+...+. .+..+++|+.|++++|.+. ..| .+..+++|+.|+++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 7 775 566555444 488888888888775544 4777788888888887776 455 67777777777777
Q ss_pred CceecccCCccccCCCC-ccEEecCCcccCCCCCcCcCCCC--CccEEEccCCcCCCCC---------------------
Q 046683 154 INQLSGSIPPSMGNLSN-LNRLFLYDNLLYGSIPPNVGNLK--SLLVLQLDENQLSGCI--------------------- 209 (329)
Q Consensus 154 ~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~--------------------- 209 (329)
+|++. ..|..+..+++ |+.|++++|.+. .++..+...+ +|+.|++++|.+.+..
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 77776 56666777776 777777777665 3444333322 2555555554443222
Q ss_pred --------CccccCCCCCcEEEccCccccCCCCcccc-------CCCcccEEEccCCccCCCCCCcccccccCCCceEEe
Q 046683 210 --------PRSFGNLTNLIQLFLSFNNLSGSIPREIG-------NLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFG 274 (329)
Q Consensus 210 --------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~ 274 (329)
...+..+++|+.|++++|.++......+. ++++|+.|++++|++. ..+..+. ...+++|+.|+
T Consensus 682 ~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~-~~~l~~L~~L~ 759 (876)
T 4ecn_A 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFR-ATTLPYLSNMD 759 (876)
T ss_dssp SSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGS-TTTCTTCCEEE
T ss_pred CCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhh-hccCCCcCEEE
Confidence 12222445555555555555522221222 1125566666666555 2332221 01345666666
Q ss_pred ccCCcccccCCcccccCCCccEEEecC------CccccchhhhhhhcCCCcEEEcCCccc
Q 046683 275 VSENHFQGTIPKSLKYCTSLFRVRVDG------NNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
+++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+.|+|++|+|
T Consensus 760 Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred eCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 66666654 555556666666666654 555556666666666666666666665
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-31 Score=249.39 Aligned_cols=299 Identities=26% Similarity=0.302 Sum_probs=217.5
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++|+++++.+.+ +++..|.++++|++|+++++.+....+..+.++++|++|++++|.+....+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 479999999999974 5555899999999999999999988888899999999999999999854445789999999999
Q ss_pred eecCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCcccc--CCCCccEEecCCccc
Q 046683 105 LHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMG--NLSNLNRLFLYDNLL 181 (329)
Q Consensus 105 l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~ 181 (329)
+++|.+....+ .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99999887664 588999999999999999877788888999999999999988765555443 457899999998887
Q ss_pred CCCCCcCcCCC---------------------------CCccEEEccCCcCCCCCCccccCCC--CCcEEEccCccccCC
Q 046683 182 YGSIPPNVGNL---------------------------KSLLVLQLDENQLSGCIPRSFGNLT--NLIQLFLSFNNLSGS 232 (329)
Q Consensus 182 ~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~ 232 (329)
.+..+..+..+ ++|++|++++|.+.+..+..+..++ +|++|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 75554433322 4566666666666655555565553 377888877777766
Q ss_pred CCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccc-----cCCc----ccccCCCccEEEecCCc
Q 046683 233 IPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQG-----TIPK----SLKYCTSLFRVRVDGNN 303 (329)
Q Consensus 233 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-----~~~~----~~~~~~~L~~L~l~~~~ 303 (329)
.+..+..+++|++|++++|.+.+..+..+. .+++|++|+++++...+ .+|. .+..+++|++|++++|.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLH---GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTT---TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhc---CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 666777777788888877777655444433 33556666665543221 1111 34455666666666666
Q ss_pred cccchhhhhhhcCCCcEEEcCCcc
Q 046683 304 LTGNISQALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 304 l~~~~~~~~~~~~~L~~L~l~~n~ 327 (329)
+.+..+..+..+++|++|++++|.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCB
T ss_pred cCCCChhHhccccCCcEEECCCCc
Confidence 665555555556666666655554
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=244.13 Aligned_cols=294 Identities=20% Similarity=0.245 Sum_probs=196.2
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++|++++|.+.+ +++..+..+++|++|++++|.++...+..|..+++|++|++++|+++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 567888888887763 34336777888888888888777666677777888888888877776 44544 677777777
Q ss_pred eecCcCCCC--CCCCCCCCCccEEEccCCcccc-------------------------CCCcccCCC-------------
Q 046683 105 LHSNKLNGS--IPPLGNLNNLVKLFLLNNSLSG-------------------------SIPPDIGNL------------- 144 (329)
Q Consensus 105 l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-------------------------~~~~~~~~~------------- 144 (329)
+++|.+... +..+..+++|++|++++|.+.. ..+..+..+
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 777777652 2346666777777766665532 111111111
Q ss_pred ----------------------------------------------------------------------CCCcEEEccC
Q 046683 145 ----------------------------------------------------------------------KSLSELDLSI 154 (329)
Q Consensus 145 ----------------------------------------------------------------------~~L~~L~l~~ 154 (329)
++|++|++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 1344444444
Q ss_pred ceecccCCccc-----cCCCCccEEecCCccc--------------------------CCCCCcCcCCCCCccEEEccCC
Q 046683 155 NQLSGSIPPSM-----GNLSNLNRLFLYDNLL--------------------------YGSIPPNVGNLKSLLVLQLDEN 203 (329)
Q Consensus 155 ~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~L~~L~l~~~ 203 (329)
|++.+..|..+ ..+++|+.++++++.+ .... ....+++|++|++++|
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 44443444443 3333333333333222 1110 0156678888888888
Q ss_pred cCCCCCCccccCCCCCcEEEccCccccC--CCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCccc
Q 046683 204 QLSGCIPRSFGNLTNLIQLFLSFNNLSG--SIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQ 281 (329)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~ 281 (329)
.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++.+..+.. .+..+++|++|++++|.+.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--DCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC--SCCCCTTCCEEECCSSCCC
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc--hhccCccCCEEECcCCCCC
Confidence 8887677777888888888888888874 33456778888888888888887533322 1234578889999988887
Q ss_pred ccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 282 GTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 282 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 66655544 78999999999998 77777779999999999999875
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=7.4e-33 Score=254.38 Aligned_cols=155 Identities=22% Similarity=0.188 Sum_probs=126.1
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+.+++|+++++.+++ +++..+..+++|++|++++|.+....+..|..+++|++|++++|++.+..+..+.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 369999999999874 4444899999999999999999988878899999999999999999866666789999999999
Q ss_pred eecCcCCCC--CCCCCCCCCccEEEccCCc-cccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcc
Q 046683 105 LHSNKLNGS--IPPLGNLNNLVKLFLLNNS-LSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNL 180 (329)
Q Consensus 105 l~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 180 (329)
+++|.+... +..+..+++|++|++++|. +....+..+..+++|++|++++|++.+..+..+..+++|++|+++++.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999988753 3468889999999999987 444445678889999999999998887777776665555555554443
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=6e-31 Score=243.55 Aligned_cols=290 Identities=21% Similarity=0.205 Sum_probs=214.3
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
++++.++++++.+. .+|+..+..+++|++|+++++.+....+..|..+++|++|++++|.+.+..+..|.++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45788899988876 67776789999999999999999988878899999999999999999977777889999999999
Q ss_pred eecCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCC
Q 046683 105 LHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 105 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
+++|.+...++. +..+++|++|++++|.+....+..+..+++|++|++++|.+.... +..+++|+.|++++|.+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 999999877765 589999999999999998888888999999999999999887542 4445666666666665542
Q ss_pred CCCc----------------CcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEE
Q 046683 184 SIPP----------------NVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLA 247 (329)
Q Consensus 184 ~~~~----------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 247 (329)
.... .....++|+.|++++|.+.+ +..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 1000 00112456666666666653 24456667777777777777666666677777777777
Q ss_pred ccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcc
Q 046683 248 LDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 248 l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 327 (329)
+++|.+.+. +..+ ..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+.. +..+++|+.|++++|+
T Consensus 285 Ls~N~l~~l-~~~~---~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 285 ISNNRLVAL-NLYG---QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CTTSCCCEE-ECSS---SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred CCCCCCCCC-Cccc---ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCC
Confidence 777776642 2222 23467777777777766 45555666777777777777776442 5566777777777776
Q ss_pred c
Q 046683 328 F 328 (329)
Q Consensus 328 ~ 328 (329)
+
T Consensus 357 ~ 357 (597)
T 3oja_B 357 W 357 (597)
T ss_dssp E
T ss_pred C
Confidence 5
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=8.6e-31 Score=251.54 Aligned_cols=297 Identities=22% Similarity=0.219 Sum_probs=237.4
Q ss_pred CCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcc--cccCCCcc
Q 046683 24 AGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCE--IFLLTHLK 101 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~--~~~~~~L~ 101 (329)
.+++++|++++|...+.+++..|.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+.. +.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 4679999999998777887768999999999999999999888889999999999999999998655554 88999999
Q ss_pred EEEeecCcCCCCCC--CCCCCCCccEEEccCCccccCCCcccCCC--CCCcEEEccCceecccCCccccCCCC------c
Q 046683 102 FLILHSNKLNGSIP--PLGNLNNLVKLFLLNNSLSGSIPPDIGNL--KSLSELDLSINQLSGSIPPSMGNLSN------L 171 (329)
Q Consensus 102 ~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L 171 (329)
+|++++|.+..... .+..+++|++|++++|.+....+..+..+ ++|+.|++++|.+....+..+..+++ |
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 99999999987654 48899999999999999887777777666 78888888888887666666655554 8
Q ss_pred cEEecCCcccCCCCCcCc------------------------------------CC--CCCccEEEccCCcCCCCCCccc
Q 046683 172 NRLFLYDNLLYGSIPPNV------------------------------------GN--LKSLLVLQLDENQLSGCIPRSF 213 (329)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~------------------------------------~~--~~~L~~L~l~~~~~~~~~~~~l 213 (329)
+.|++++|.+....+..+ .. .++|++|++++|.+.+..+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 888888886543222111 11 2578889998888887777778
Q ss_pred cCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCC
Q 046683 214 GNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTS 293 (329)
Q Consensus 214 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 293 (329)
..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..+. .+++|++|++++|.+....+..+..+++
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY---GLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS---SCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc---CCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 8888999999999988877777888888999999999988765555554 4578889999988887666677888888
Q ss_pred ccEEEecCCccccchhhhhhhcCCCcEEEcCCccc
Q 046683 294 LFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 294 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
|+.|++++|.+++.. .+++|+.|++++|++
T Consensus 364 L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 364 LQTLDLRDNALTTIH-----FIPSIPDIFLSGNKL 393 (844)
T ss_dssp CCEEEEETCCSCCCS-----SCCSCSEEEEESCCC
T ss_pred CCEEECCCCCCCccc-----CCCCcchhccCCCCc
Confidence 899999888887422 256666666666655
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.5e-30 Score=229.02 Aligned_cols=270 Identities=18% Similarity=0.149 Sum_probs=222.5
Q ss_pred ccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCC-CCCCCCccE
Q 046683 47 SLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPP-LGNLNNLVK 125 (329)
Q Consensus 47 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~ 125 (329)
-.++++++++++++.+.......+..+++|++|+++++.+.+..+..+..+++|++|++++|.+....+. +..+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3568999999999999887777789999999999999999866667899999999999999999877664 789999999
Q ss_pred EEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcC
Q 046683 126 LFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQL 205 (329)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (329)
|++++|.+....+..+..+++|++|++++|++....+..+..+++|++|++++|.+.... +..+++|+++++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 999999998666666799999999999999999888888999999999999999887542 34445555555555544
Q ss_pred -------------------CCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccccc
Q 046683 206 -------------------SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICR 266 (329)
Q Consensus 206 -------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 266 (329)
... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+. .
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~---~ 270 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV---K 270 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT---T
T ss_pred cccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc---c
Confidence 322 11 2236889999999988743 5778899999999999998865555443 5
Q ss_pred CCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 267 GGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+++|++|++++|.+.+ ++..+..+++|+.|++++|++. .++..+..+++|++|++++|+|+
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 6899999999999874 4555677899999999999998 56777899999999999999875
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.2e-30 Score=238.39 Aligned_cols=294 Identities=19% Similarity=0.225 Sum_probs=200.5
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
...++++++++.++ .+|. .+ .++|++|++++|.++...+..|..+++|++|++++|++++..+.+|.++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~-~ip~-~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPK-DL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCC-SCCT-TS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCc-cCCC-CC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 34589999999998 5776 33 28999999999999988888999999999999999999977788999999999999
Q ss_pred eecCcCCCCCCCCCCCCCccEEEccCCccccC-CCcccCCCCCCcEEEccCceecccCCccccCC---------------
Q 046683 105 LHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGS-IPPDIGNLKSLSELDLSINQLSGSIPPSMGNL--------------- 168 (329)
Q Consensus 105 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--------------- 168 (329)
+++|.+...+.. .+++|++|++++|.+... .+..+..+++|++|++++|++.......+..+
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCC
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccccccc
Confidence 999999865544 899999999999998863 35789999999999999988753211111111
Q ss_pred --------------------------------------------------------------------------------
Q 046683 169 -------------------------------------------------------------------------------- 168 (329)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (329)
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence
Q ss_pred -----------CCccEEecCCcccCCCCCcCc------------------------------------------------
Q 046683 169 -----------SNLNRLFLYDNLLYGSIPPNV------------------------------------------------ 189 (329)
Q Consensus 169 -----------~~L~~L~l~~~~~~~~~~~~~------------------------------------------------ 189 (329)
++|++|++++|.+.+..+..+
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 033344444443332222221
Q ss_pred -----CCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCC--CccccCCCcccEEEccCCccCCCCCCccc
Q 046683 190 -----GNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSI--PREIGNLRSLVQLALDQNQFTGFLPPSLG 262 (329)
Q Consensus 190 -----~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 262 (329)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+..+++|++|++++|++.+..+..
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-- 422 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-- 422 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC--
T ss_pred cccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh--
Confidence 34455666666666665545555556666666666666665322 234556666666666666665422221
Q ss_pred ccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 263 NICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 263 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
.+..+++|++|++++|.+.+..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+|+
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 122345666666666666544443332 57777888888777 55665667888888888888774
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=7.9e-30 Score=229.40 Aligned_cols=281 Identities=27% Similarity=0.367 Sum_probs=134.3
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++|+++++.+.+ +++ +..+++|++|+++++.+....+ +..+++|++|++++|.+.+. + .+.++++|++|+
T Consensus 68 ~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-D-PLKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred cCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-h-HHcCCCCCCEEE
Confidence 456677777766653 332 6666667777776666664433 56666677777766666532 2 255666666666
Q ss_pred eecCcCCCCCC--------------------CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCcc
Q 046683 105 LHSNKLNGSIP--------------------PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPS 164 (329)
Q Consensus 105 l~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 164 (329)
+++|.+..... .+..+++|+.|++++|.+... ..+..+++|++|++++|++.+..+
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--
Confidence 66665543211 123344444455544444321 123444455555555544443222
Q ss_pred ccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCccc
Q 046683 165 MGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLV 244 (329)
Q Consensus 165 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 244 (329)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 290 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 290 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccC
Confidence 33344444444444444321 123344445555554444442221 3344444444444444442211 33444444
Q ss_pred EEEccCCccCCCCCCccc-------------------ccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccc
Q 046683 245 QLALDQNQFTGFLPPSLG-------------------NICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 245 ~L~l~~~~l~~~~~~~l~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 305 (329)
.|++++|++.+..+ +. .+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.
T Consensus 291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 44444444432111 10 022334445555554444322 23445555555555555555
Q ss_pred cchhhhhhhcCCCcEEEcCCccc
Q 046683 306 GNISQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 306 ~~~~~~~~~~~~L~~L~l~~n~~ 328 (329)
+..| +..+++|+.|++++|++
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEEE
T ss_pred ccch--hhcCCCCCEEeccCCcc
Confidence 4443 55555555555555544
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.1e-30 Score=236.94 Aligned_cols=302 Identities=23% Similarity=0.219 Sum_probs=199.9
Q ss_pred CCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCccccc-ccCcccccCCCccE
Q 046683 24 AGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSG-KIPCEIFLLTHLKF 102 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~ 102 (329)
.+++++|++++|.+.+ +++..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+.++++|++
T Consensus 49 l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 4579999999999884 444488999999999999999998887778999999999999998874 24567888889999
Q ss_pred EEeecCcC-CCCC-CCCCCCCCccEEEccCCccccCCCcccCC------------------------CCCCcEEEccCce
Q 046683 103 LILHSNKL-NGSI-PPLGNLNNLVKLFLLNNSLSGSIPPDIGN------------------------LKSLSELDLSINQ 156 (329)
Q Consensus 103 L~l~~~~~-~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------------------~~~L~~L~l~~~~ 156 (329)
|++++|.. .... ..+..+++|++|++++|.+....+..+.. +++|++|++++|+
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 99988873 3332 24667777777777777666544444332 3444445544444
Q ss_pred eccc----------------------------------------------------------------------------
Q 046683 157 LSGS---------------------------------------------------------------------------- 160 (329)
Q Consensus 157 ~~~~---------------------------------------------------------------------------- 160 (329)
+.+.
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 3321
Q ss_pred -------------------------------------CCccc-cCCCCccEEecCCcccCCCC---CcCcCCCCCccEEE
Q 046683 161 -------------------------------------IPPSM-GNLSNLNRLFLYDNLLYGSI---PPNVGNLKSLLVLQ 199 (329)
Q Consensus 161 -------------------------------------~~~~l-~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~ 199 (329)
.|..+ ..+++|++|++++|.+.+.. ...+..+++|++|+
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 00011 12445555555555544322 11234455666666
Q ss_pred ccCCcCCCCCC--ccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCC---cccc-----------
Q 046683 200 LDENQLSGCIP--RSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPP---SLGN----------- 263 (329)
Q Consensus 200 l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~l~~----------- 263 (329)
+++|.+.+..+ ..+..+++|++|++++|.++ ..+..+..+++|++|++++|++...... .+..
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh
Confidence 66665553221 23556667777777777666 4555566666777777777766422111 0000
Q ss_pred cccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 264 ICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 264 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
...+++|++|++++|++. .+|. ...+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus 447 ~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 447 SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 124578888888888877 5555 356789999999999999888888999999999999999874
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.6e-29 Score=227.48 Aligned_cols=261 Identities=29% Similarity=0.412 Sum_probs=162.8
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCccccccc--------------
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKI-------------- 90 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-------------- 90 (329)
+++++|+++++.+.+ +++ +..+++|++|++++|.+....+ +..+++|++|++++|.+.+..
T Consensus 90 ~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 90 TKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 164 (466)
T ss_dssp TTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE
T ss_pred ccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC
Confidence 456677777766653 222 5666666666666666554322 555666666666555544210
Q ss_pred -----CcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCC--------------------cccCCCC
Q 046683 91 -----PCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIP--------------------PDIGNLK 145 (329)
Q Consensus 91 -----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~ 145 (329)
...+.++++|++|++++|.+... +.+..+++|++|++++|.+....+ ..+..++
T Consensus 165 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~ 243 (466)
T 1o6v_A 165 NQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT 243 (466)
T ss_dssp ESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred CcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCC
Confidence 01234455566666666555432 234455555555555554442222 2344455
Q ss_pred CCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEcc
Q 046683 146 SLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLS 225 (329)
Q Consensus 146 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 225 (329)
+|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECc
Confidence 55555555555543322 5556666666666666654322 5566777777777777664332 5667788888888
Q ss_pred CccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccc
Q 046683 226 FNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 226 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 305 (329)
+|.+++..+ +..+++|+.|++++|++.+. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|+++
T Consensus 318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp SSCCSCCGG--GGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CCcCCCchh--hccCccCCEeECCCCccCCc-----hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 887774433 66778888888888887743 345577999999999999987665 788999999999999998
Q ss_pred c
Q 046683 306 G 306 (329)
Q Consensus 306 ~ 306 (329)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 6
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.8e-29 Score=235.57 Aligned_cols=132 Identities=30% Similarity=0.368 Sum_probs=115.7
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
.+++|+|++|.++ .+++.+|.++++|++|++++|.++...+.+|.++++|++|++++|+++...+.+|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 6899999999997 677778999999999999999999888889999999999999999998555567899999999999
Q ss_pred ecCcCCCCCC-CCCCCCCccEEEccCCccccC-CCcccCCCCCCcEEEccCceec
Q 046683 106 HSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGS-IPPDIGNLKSLSELDLSINQLS 158 (329)
Q Consensus 106 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 158 (329)
++|.+....+ .+..+++|++|++++|.+... .+..+..+++|++|++++|++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9999987665 488999999999999988643 5677788889999998887654
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=6.5e-31 Score=224.18 Aligned_cols=249 Identities=31% Similarity=0.453 Sum_probs=151.5
Q ss_pred CceeEEeecCCccCC--CCchhcCCCCCCcEEecCC-cccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEE
Q 046683 50 PHLAYLDLSFNELFG--IIPPQIGNLSKLQLLSLHA-NAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKL 126 (329)
Q Consensus 50 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 126 (329)
.++++|+++++.+.+ ..+..+..+++|++|++++ +.+.+..|..+.++++|++|++++|.+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--------------- 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--------------- 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---------------
Confidence 456777777776665 5556666667777777763 5666556666666666666666666554
Q ss_pred EccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCC-CccEEEccCCcC
Q 046683 127 FLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLK-SLLVLQLDENQL 205 (329)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 205 (329)
...+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..++ .|++|++++|.+
T Consensus 115 --------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 115 --------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp --------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred --------CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 23333344444444444444444444444444555555555555554433444444444 555555555555
Q ss_pred CCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCC
Q 046683 206 SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIP 285 (329)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~ 285 (329)
.+..+..+..++ |+.|++++|.+++..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..|
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSSCCEECCC
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcCCcccCcCC
Confidence 544455555544 66666666666655666666666777777777766533322 2344677777777777776777
Q ss_pred cccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcc
Q 046683 286 KSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 327 (329)
..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 77777777777777777777766665 677777777777775
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-29 Score=235.24 Aligned_cols=268 Identities=19% Similarity=0.184 Sum_probs=216.7
Q ss_pred CCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEE
Q 046683 24 AGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFL 103 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 103 (329)
.++++.|+++++.+.+ +++..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|.++++|++|
T Consensus 74 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 3579999999999984 555589999999999999999998888888999999999999999985444557899999999
Q ss_pred EeecCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEcc-------------------CceecccCCc
Q 046683 104 ILHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLS-------------------INQLSGSIPP 163 (329)
Q Consensus 104 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------------~~~~~~~~~~ 163 (329)
++++|.+....+ .+..+++|++|++++|.+.... +..+++|+.|+++ +|.+....+
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~- 228 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG- 228 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC-
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc-
Confidence 999999987766 4889999999999999887543 3334455555544 444432211
Q ss_pred cccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcc
Q 046683 164 SMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSL 243 (329)
Q Consensus 164 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 243 (329)
. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ .+..+..+++|
T Consensus 229 ~--~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 229 P--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp S--CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred c--cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC
Confidence 1 135799999999988753 567889999999999999998888889999999999999999984 45566778999
Q ss_pred cEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccch
Q 046683 244 VQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNI 308 (329)
Q Consensus 244 ~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 308 (329)
+.|++++|.+. ..+..+. .+++|++|++++|.+.+. + +..+++|+.|++++|++....
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~---~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQP---QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CEEECCSSCCC-CCGGGHH---HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred cEEECCCCCCC-ccCcccc---cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 99999999998 4454443 558999999999998744 2 567889999999999998643
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3e-29 Score=215.91 Aligned_cols=281 Identities=23% Similarity=0.286 Sum_probs=234.6
Q ss_pred ceecceeecCC----------CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCC
Q 046683 14 CAWSGISCNDA----------GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHA 83 (329)
Q Consensus 14 ~~~~~~~~~~~----------~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 83 (329)
|.|....|+.. +.++.|+++++.+. .+++..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 57888777642 36899999999987 55555899999999999999999988888999999999999999
Q ss_pred cccccccCcccccCCCccEEEeecCcCCCCCCC-CCCCCCccEEEccCCcccc--CCCcccCCCCCCcEEEccCceeccc
Q 046683 84 NAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSG--SIPPDIGNLKSLSELDLSINQLSGS 160 (329)
Q Consensus 84 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~ 160 (329)
|++. .+|..+. ++|++|++++|.+....+. +..+++|+.|++++|.+.. ..+..+..+ +|++|++++|++..
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 9988 5666553 8999999999999876664 7899999999999998863 566777777 99999999999885
Q ss_pred CCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCC
Q 046683 161 IPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNL 240 (329)
Q Consensus 161 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 240 (329)
.|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ ..+..+..+
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 444443 78999999999998777778899999999999999999877778899999999999999998 677778899
Q ss_pred CcccEEEccCCccCCCCCCccccc---ccCCCceEEeccCCccc--ccCCcccccCCCccEEEecCCc
Q 046683 241 RSLVQLALDQNQFTGFLPPSLGNI---CRGGALQYFGVSENHFQ--GTIPKSLKYCTSLFRVRVDGNN 303 (329)
Q Consensus 241 ~~L~~L~l~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 303 (329)
++|+.|++++|+++......+... .....++.|++++|.+. +..+..+..+++|+.+++++|+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999986655555432 12467999999999876 5667788899999999999885
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.1e-29 Score=213.04 Aligned_cols=283 Identities=20% Similarity=0.265 Sum_probs=233.8
Q ss_pred CceecceeecC----------CCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecC
Q 046683 13 PCAWSGISCND----------AGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLH 82 (329)
Q Consensus 13 ~~~~~~~~~~~----------~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 82 (329)
.|.+....|+. .+.+++|+++++.++ .+++..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 35777777763 236899999999998 4555589999999999999999998888889999999999999
Q ss_pred CcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCcccc--CCCcccCCCCCCcEEEccCceecc
Q 046683 83 ANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSG--SIPPDIGNLKSLSELDLSINQLSG 159 (329)
Q Consensus 83 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 159 (329)
+|++. .+|..+. ++|++|++++|.+....+ .+..+++|+.|++++|.+.. ..+..+..+++|++|++++|++..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99988 5665543 899999999999886555 37889999999999998863 566778899999999999999884
Q ss_pred cCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccC
Q 046683 160 SIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGN 239 (329)
Q Consensus 160 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 239 (329)
.|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ ..+..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 444443 89999999999998777778899999999999999998777778888999999999999998 67778889
Q ss_pred CCcccEEEccCCccCCCCCCccccc---ccCCCceEEeccCCcccc--cCCcccccCCCccEEEecCCc
Q 046683 240 LRSLVQLALDQNQFTGFLPPSLGNI---CRGGALQYFGVSENHFQG--TIPKSLKYCTSLFRVRVDGNN 303 (329)
Q Consensus 240 ~~~L~~L~l~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 303 (329)
+++|++|++++|++++.....+... .....++.+++++|.+.. ..+..+..+++++.+++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999999986655555322 234688999999998753 456778889999999999885
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4.8e-28 Score=216.53 Aligned_cols=278 Identities=18% Similarity=0.171 Sum_probs=195.7
Q ss_pred CCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEE
Q 046683 24 AGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFL 103 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 103 (329)
.+++++|+++++.+++ ++ .+..+++|++|++++|.++... +..+++|++|++++|.+++. + +.++++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 3578899999998874 44 5788899999999999888652 77888999999998888743 3 7788899999
Q ss_pred EeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCC
Q 046683 104 ILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG 183 (329)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 183 (329)
++++|.+... .+..+++|++|++++|.+... .+..+++|++|++++|+..+.. .+..+++|++|++++|.+.+
T Consensus 112 ~L~~N~l~~l--~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 112 NCDTNKLTKL--DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECCSSCCSCC--CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCcCCee--cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 9998888764 277888888888888887753 2667777777777777432222 35566777777777777664
Q ss_pred CCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccc
Q 046683 184 SIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGN 263 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 263 (329)
. + +..+++|++|++++|.+.+. .+..+++|+.|++++|.+++ .+ +..+++|+.|++++|++.+.....+..
T Consensus 185 l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 185 L-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp C-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred e-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 2 2 55666777777777766643 25566677777777776664 22 556666777777776665433222221
Q ss_pred --------------------------cccCCCceEEeccCCcccccCCc--------ccccCCCccEEEecCCccccchh
Q 046683 264 --------------------------ICRGGALQYFGVSENHFQGTIPK--------SLKYCTSLFRVRVDGNNLTGNIS 309 (329)
Q Consensus 264 --------------------------~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~l~~~~~ 309 (329)
...+++|+.|++++|...+.++. .+..+++|+.|++++|++++. +
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~ 334 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D 334 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C
T ss_pred CCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c
Confidence 12346777777777754433222 245678899999999999874 2
Q ss_pred hhhhhcCCCcEEEcCCcccC
Q 046683 310 QALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 310 ~~~~~~~~L~~L~l~~n~~~ 329 (329)
++.+++|+.|++++|+|+
T Consensus 335 --l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 335 --VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp --CTTCTTCSEEECCSSCCC
T ss_pred --cccCCcCcEEECCCCCCC
Confidence 888999999999999875
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=217.94 Aligned_cols=275 Identities=17% Similarity=0.090 Sum_probs=191.5
Q ss_pred EeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCc
Q 046683 30 ISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNK 109 (329)
Q Consensus 30 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 109 (329)
.+++++.++ .+|. .+ .++|++|+++++.++......+..+++|++|++++|++++..+..+.++++|++|++++|.
T Consensus 36 c~~~~~~l~-~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 36 CKGSSGSLN-SIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EECCSTTCS-SCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eeCCCCCcc-cccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 455666665 5555 22 2589999999998887776778889999999999998886667778888999999999988
Q ss_pred CCCCCCC-CCCCCCccEEEccCCccccCCC-cccCCCCCCcEEEccCc-eecccCCccccCCCCccEEecCCcccCCCCC
Q 046683 110 LNGSIPP-LGNLNNLVKLFLLNNSLSGSIP-PDIGNLKSLSELDLSIN-QLSGSIPPSMGNLSNLNRLFLYDNLLYGSIP 186 (329)
Q Consensus 110 ~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 186 (329)
+....+. +..+++|++|++++|.+..... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 8866554 6788888888888888875444 46778888888888887 4565556677788888888888887776666
Q ss_pred cCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccc---cCCCcccEEEccCCccCCCCCCcc-c
Q 046683 187 PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI---GNLRSLVQLALDQNQFTGFLPPSL-G 262 (329)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~l-~ 262 (329)
..+..+++|++|++++|.+.......+..+++|+.|++++|.+++.....+ ...+.++.++++++.+.+.....+ .
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 677777888888888887764333334456778888888887765433322 234566677777666553211111 1
Q ss_pred ccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccch
Q 046683 263 NICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNI 308 (329)
Q Consensus 263 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 308 (329)
.+..+++|++|++++|++.......+..+++|+.|++++|++.+..
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 1234567777777777776332233466777777777777776544
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.7e-28 Score=204.42 Aligned_cols=230 Identities=25% Similarity=0.245 Sum_probs=140.9
Q ss_pred CceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccc--cCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEE
Q 046683 50 PHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGK--IPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLF 127 (329)
Q Consensus 50 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 127 (329)
++|++|+++++.++......+..+++|++|++++|.+... .+..+..+++|++|++++|.+......+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4666666666666655545556666666666666665522 13444456666666666666554444455666666666
Q ss_pred ccCCccccCCC-cccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCC-CCCcCcCCCCCccEEEccCCcC
Q 046683 128 LLNNSLSGSIP-PDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYG-SIPPNVGNLKSLLVLQLDENQL 205 (329)
Q Consensus 128 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 205 (329)
+++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 66666654433 456666666666666666665555666666666666666666653 3445556666677777777666
Q ss_pred CCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCccc
Q 046683 206 SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQ 281 (329)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~ 281 (329)
.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+ .++|++|++++|.+.
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLTQNDFA 261 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC--CTTCCEEECTTCCEE
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh--hccCCEEEccCCCee
Confidence 65555566666677777777776665555556666677777777776665544444322 136677777776664
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.6e-27 Score=204.31 Aligned_cols=239 Identities=22% Similarity=0.271 Sum_probs=167.3
Q ss_pred cCCCCceecceeec---------CCCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEE
Q 046683 9 SKIRPCAWSGISCN---------DAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLL 79 (329)
Q Consensus 9 ~~~~~~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 79 (329)
....+|.|.|..|. ..++++.|+++++.+. .+|+ .+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 56 ~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 56 NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132 (328)
T ss_dssp TCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEE
T ss_pred ccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEE
Confidence 46778899998885 2368999999999987 7777 6777999999999999988 566778899999999
Q ss_pred ecCCcccccccCcccccCCCccEEEeecCcCCCCCCC-CC---------CCCCccEEEccCCccccCCCcccCCCCCCcE
Q 046683 80 SLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPP-LG---------NLNNLVKLFLLNNSLSGSIPPDIGNLKSLSE 149 (329)
Q Consensus 80 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 149 (329)
++++|.+. .+|..+.++++|++|++++|...+..+. +. .+++|++|++++|.+. ..+..+..+++|++
T Consensus 133 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp EEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred ECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 99999988 7788899999999999999766554442 32 2666666666666665 44555666666666
Q ss_pred EEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccc
Q 046683 150 LDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNL 229 (329)
Q Consensus 150 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 229 (329)
|++++|++.+ .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 6666666653 444556666666666666655555555556666666666666655555555555666666666666666
Q ss_pred cCCCCccccCCCcccEEEccCCcc
Q 046683 230 SGSIPREIGNLRSLVQLALDQNQF 253 (329)
Q Consensus 230 ~~~~~~~~~~~~~L~~L~l~~~~l 253 (329)
.+..|..+..+++++.+.+..+.+
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhccHHHhhccCceEEeCCHHHH
Confidence 556666666666666666655443
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.1e-28 Score=207.16 Aligned_cols=240 Identities=25% Similarity=0.260 Sum_probs=205.0
Q ss_pred ceecceeecCC----------CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCC--CchhcCCCCCCcEEec
Q 046683 14 CAWSGISCNDA----------GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGI--IPPQIGNLSKLQLLSL 81 (329)
Q Consensus 14 ~~~~~~~~~~~----------~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l 81 (329)
|.|.+..|... +++++|+++++.+. .++...|..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 68888888752 26899999999987 67776789999999999999988743 2455667899999999
Q ss_pred CCcccccccCcccccCCCccEEEeecCcCCCCCC--CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecc
Q 046683 82 HANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP--PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSG 159 (329)
Q Consensus 82 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 159 (329)
++|.+. ..+..+..+++|++|++++|.+..... .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999888 567778889999999999998876654 57889999999999999887788888999999999999999876
Q ss_pred -cCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcccc
Q 046683 160 -SIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIG 238 (329)
Q Consensus 160 -~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 238 (329)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5788888999999999999998877677788899999999999999877777788899999999999999887887888
Q ss_pred CCC-cccEEEccCCccCC
Q 046683 239 NLR-SLVQLALDQNQFTG 255 (329)
Q Consensus 239 ~~~-~L~~L~l~~~~l~~ 255 (329)
.++ +|++|++++|++..
T Consensus 245 ~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCTTCCEEECTTCCEEC
T ss_pred hhhccCCEEEccCCCeec
Confidence 874 89999999999874
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=211.55 Aligned_cols=279 Identities=19% Similarity=0.143 Sum_probs=197.7
Q ss_pred cCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEE
Q 046683 48 LFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKL 126 (329)
Q Consensus 48 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L 126 (329)
.|+.....+++++.++..+. .+ .++|++|+++++.+++..+..+.++++|++|++++|.+....+ .+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 44555557777777775433 22 2478888888888875555577788888888888887776544 47778888888
Q ss_pred EccCCccccCCCcccCCCCCCcEEEccCceecccCC-ccccCCCCccEEecCCc-ccCCCCCcCcCCCCCccEEEccCCc
Q 046683 127 FLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIP-PSMGNLSNLNRLFLYDN-LLYGSIPPNVGNLKSLLVLQLDENQ 204 (329)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (329)
++++|.+....+..+..+++|++|++++|++..... ..+..+++|++|++++| .+....+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888888875555557788888888888888775443 46777888888888887 4554455567778888888888888
Q ss_pred CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccc--
Q 046683 205 LSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQG-- 282 (329)
Q Consensus 205 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-- 282 (329)
+.+..+..+..+++|++|++++|.++......+..+++|+.|++++|.+.+.....+........++.++++++.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 876667777888888888888887764333344557888888888888876555544444455677777777776654
Q ss_pred --cCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 283 --TIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 283 --~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
.++..+..+++|+.|++++|+++......+..+++|++|++++|+++
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 34556677888888888888888443344578888888888888764
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.3e-26 Score=216.18 Aligned_cols=149 Identities=28% Similarity=0.328 Sum_probs=127.3
Q ss_pred EEeecCCCCcCccCCcccccCC-ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeec
Q 046683 29 NISLTNTGLSGTLHDFSFSLFP-HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHS 107 (329)
Q Consensus 29 ~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 107 (329)
+.+.++.+++ .+|. .+| .+++|++++|.++...+..|.++++|++|++++|++.+..+.+|.++++|++|++++
T Consensus 35 ~~~c~~~~l~-~vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 35 TYQCMELNFY-KIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp EEECTTSCCS-SCCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCCcC-ccCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 4566666665 5665 334 799999999999988888999999999999999999966677899999999999999
Q ss_pred CcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceeccc-CCccccCCCCccEEecCCcccC
Q 046683 108 NKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGS-IPPSMGNLSNLNRLFLYDNLLY 182 (329)
Q Consensus 108 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 182 (329)
|.+...++ .+..+++|++|++++|.+....+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+.
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99987665 478999999999999999977778899999999999999998754 4677788899999998887654
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.5e-27 Score=198.61 Aligned_cols=223 Identities=26% Similarity=0.266 Sum_probs=171.8
Q ss_pred eEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeec
Q 046683 28 INISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHS 107 (329)
Q Consensus 28 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 107 (329)
+.++.++..++ .+|. ...++|++|+++++.++...+..+..+++|++|+++++.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 67778877776 4544 2346899999999998887777888999999999999988866678888899999999998
Q ss_pred Cc-CCCCC-CCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCC
Q 046683 108 NK-LNGSI-PPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSI 185 (329)
Q Consensus 108 ~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 185 (329)
|. +.... ..+..+++|++|++++|.+....+..+..+++|++|++++|++....+..+..+++|++|++++|.+.+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 66553 35777888888888888887666777788888888888888877666666777788888888888776555
Q ss_pred CcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccC
Q 046683 186 PPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 186 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 555677777888888887777666667777777778887777777555556777777777777777765
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4e-26 Score=204.09 Aligned_cols=214 Identities=21% Similarity=0.170 Sum_probs=182.1
Q ss_pred ccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCcc
Q 046683 45 SFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLV 124 (329)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 124 (329)
.+..+++|++|+++++.++.. + .+..+++|++|++++|++++. + +..+++|++|++++|.+.+. .+..+++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DVTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CCTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ecCCCCcCC
Confidence 678899999999999999865 3 688999999999999999853 3 78899999999999998875 388999999
Q ss_pred EEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCc
Q 046683 125 KLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQ 204 (329)
Q Consensus 125 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (329)
+|++++|.+... + +..+++|++|++++|++++. .+..+++|++|++++|...+.. .+..+++|++|++++|.
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 999999998853 3 88999999999999998864 3788999999999999544343 46788999999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccC
Q 046683 205 LSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTI 284 (329)
Q Consensus 205 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~ 284 (329)
+++. + +..+++|+.|++++|.+++. .+..+++|++|++++|++.+. + +..+++|++|++++|++.+..
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-----~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D-----VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C-----CTTCTTCSEEECCSSCCSCCC
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C-----ccccCCCCEEEeeCCcCCCcC
Confidence 9864 3 77889999999999999854 478889999999999999863 2 346689999999999887544
Q ss_pred C
Q 046683 285 P 285 (329)
Q Consensus 285 ~ 285 (329)
+
T Consensus 250 ~ 250 (457)
T 3bz5_A 250 V 250 (457)
T ss_dssp C
T ss_pred H
Confidence 3
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.8e-26 Score=204.67 Aligned_cols=245 Identities=24% Similarity=0.225 Sum_probs=156.2
Q ss_pred eeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEee
Q 046683 27 VINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILH 106 (329)
Q Consensus 27 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 106 (329)
...++..+..++ .+|. .+ .+++++|+++++.++...+..|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQ-GI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCC-CC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 345566655554 4443 22 2467777777777766666666777777777777777765555666677777777777
Q ss_pred cCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCc-eecccCCccccCCCCccEEecCCcccCCC
Q 046683 107 SNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSIN-QLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 107 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
+|.+....+. +..+++|++|++++|.+....+..+..+++|++|+++++ .+....+..+..+++|++|++++|.+.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7766655543 566777777777777766555566667777777777663 34433444566667777777777766533
Q ss_pred CCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccc
Q 046683 185 IPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNI 264 (329)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 264 (329)
+ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++....+..+.
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-- 287 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT-- 287 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST--
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc--
Confidence 2 355666777777777776666666666667777777777776655566666667777777777766644433333
Q ss_pred ccCCCceEEeccCCcc
Q 046683 265 CRGGALQYFGVSENHF 280 (329)
Q Consensus 265 ~~~~~L~~L~l~~~~~ 280 (329)
.+++|+.|++++|.+
T Consensus 288 -~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 288 -PLRYLVELHLHHNPW 302 (452)
T ss_dssp -TCTTCCEEECCSSCE
T ss_pred -cccCCCEEEccCCCc
Confidence 346666777766654
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.3e-26 Score=198.63 Aligned_cols=233 Identities=21% Similarity=0.263 Sum_probs=141.9
Q ss_pred CCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEc
Q 046683 73 LSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDL 152 (329)
Q Consensus 73 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 152 (329)
.++++.|+++++.+. .+|..+.++++|++|++++|.+...+..+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 466777777777776 6666666777777777777777655555667777777777777666 45666666777777777
Q ss_pred cCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCC
Q 046683 153 SINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGS 232 (329)
Q Consensus 153 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 232 (329)
++|.+.+..|..+.. . .....+..+++|++|++++|.+. ..+..+..+++|++|++++|.++ .
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~ 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c
Confidence 766555455544332 0 00011233556666666666555 34444555666666666666665 2
Q ss_pred CCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhh
Q 046683 233 IPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQAL 312 (329)
Q Consensus 233 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 312 (329)
.+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~---~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFG---GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTT---CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhc---CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 334455666666666666665555444433 33566666666666555666666666666666666666666666666
Q ss_pred hhcCCCcEEEcCCcc
Q 046683 313 GIYHNLTFIDLSRNN 327 (329)
Q Consensus 313 ~~~~~L~~L~l~~n~ 327 (329)
+.+++|+.+++..+.
T Consensus 298 ~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 298 AQLPANCIILVPPHL 312 (328)
T ss_dssp GGSCTTCEEECCGGG
T ss_pred hhccCceEEeCCHHH
Confidence 666666666666543
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.3e-26 Score=191.97 Aligned_cols=223 Identities=26% Similarity=0.285 Sum_probs=125.3
Q ss_pred cEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCc
Q 046683 77 QLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSIN 155 (329)
Q Consensus 77 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 155 (329)
+.++.++..++ ..|..+ .++|++|+++++.+....+ .+..+++|++|+++++.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45566655555 334332 4566666666666655443 3556666666666666665555555666666666666666
Q ss_pred e-ecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCC
Q 046683 156 Q-LSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIP 234 (329)
Q Consensus 156 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 234 (329)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 4 554445555566666666666666554444455555666666666666554444445555666666666665554444
Q ss_pred ccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccc
Q 046683 235 REIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 235 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 305 (329)
..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFR---DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTT---TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHcc---CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4455556666666666655544333332 3355555555555555433344555555555555555554
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.3e-26 Score=202.51 Aligned_cols=245 Identities=26% Similarity=0.246 Sum_probs=147.7
Q ss_pred eeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEee
Q 046683 27 VINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILH 106 (329)
Q Consensus 27 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 106 (329)
...++..+..++ .+|. .+ .++++.|+++++.+....+..|..+++|++|++++|.+....+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345555555554 4444 22 1456666666666665555666666666666666666664445566666666666666
Q ss_pred cCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCc-eecccCCccccCCCCccEEecCCcccCCC
Q 046683 107 SNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSIN-QLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 107 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
+|.+....+ .+..+++|++|++++|.+....+..+..+++|++|++.++ .+....+..+..+++|++|++++|.+..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 666665444 3566666666666666666555556666666666666663 3333334456666666666666666653
Q ss_pred CCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccc
Q 046683 185 IPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNI 264 (329)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 264 (329)
.+ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|+++...+..+.
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-- 276 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT-- 276 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS--
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc--
Confidence 22 355566666666666666655556666666666666666666655555666666666666666666644333332
Q ss_pred ccCCCceEEeccCCcc
Q 046683 265 CRGGALQYFGVSENHF 280 (329)
Q Consensus 265 ~~~~~L~~L~l~~~~~ 280 (329)
.+++|+.|++++|.+
T Consensus 277 -~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 277 -PLHHLERIHLHHNPW 291 (440)
T ss_dssp -SCTTCCEEECCSSCE
T ss_pred -cccCCCEEEcCCCCc
Confidence 335666666666543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.4e-26 Score=204.91 Aligned_cols=246 Identities=20% Similarity=0.134 Sum_probs=191.7
Q ss_pred eeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccC
Q 046683 52 LAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLN 130 (329)
Q Consensus 52 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 130 (329)
...++.++..++..+ ..+ .+++++|++++|.+.+..+..|.++++|++|++++|.+....+ .+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccC-CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 467888777777543 222 2689999999999987777888899999999999998876554 578889999999999
Q ss_pred CccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCc-ccCCCCCcCcCCCCCccEEEccCCcCCCCC
Q 046683 131 NSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDN-LLYGSIPPNVGNLKSLLVLQLDENQLSGCI 209 (329)
Q Consensus 131 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 209 (329)
|.+....+..+..+++|++|++++|++....+..+..+++|++|+++++ .+.......+..+++|++|++++|.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 9888777777888899999999999888777778888899999999884 44433444577788888888888888743
Q ss_pred CccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccc
Q 046683 210 PRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLK 289 (329)
Q Consensus 210 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 289 (329)
+ .+..+++|++|++++|.+++..+..|..+++|+.|++++|++....+..+. .+++|+.|++++|.+.+..+..+.
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD---GLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT---TCTTCCEEECCSSCCSCCCTTSST
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc---CCCCCCEEECCCCcCCccChHHhc
Confidence 3 466778888888888888877777888888888888888888755554443 457888888888888766666677
Q ss_pred cCCCccEEEecCCccc
Q 046683 290 YCTSLFRVRVDGNNLT 305 (329)
Q Consensus 290 ~~~~L~~L~l~~~~l~ 305 (329)
.+++|+.|++++|++.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 7888888888888765
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.9e-26 Score=203.88 Aligned_cols=247 Identities=23% Similarity=0.164 Sum_probs=187.2
Q ss_pred ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEcc
Q 046683 51 HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLL 129 (329)
Q Consensus 51 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~ 129 (329)
..+.++.++..++..+. .+ .++++.|++++|++....+..|.++++|++|++++|.+....+ .+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 35678887777775443 22 2688999999999886667788889999999999988876553 47788889999998
Q ss_pred CCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCc-ccCCCCCcCcCCCCCccEEEccCCcCCCC
Q 046683 130 NNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDN-LLYGSIPPNVGNLKSLLVLQLDENQLSGC 208 (329)
Q Consensus 130 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 208 (329)
+|.+....+..+..+++|++|++++|++....+..+..+++|++|+++++ .+.......+..+++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 88888666677888888888888888888776777888888888888874 44433444567788888888888887743
Q ss_pred CCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCccc
Q 046683 209 IPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSL 288 (329)
Q Consensus 209 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 288 (329)
+ .+..+++|++|++++|.+++..+..|..+++|++|++++|++....+..+. .+++|++|++++|++.+..+..+
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD---NLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST---TCTTCCEEECTTSCCCCCCTTTT
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc---CCCCCCEEECCCCCCCccChhHh
Confidence 3 366777888888888888776677778888888888888887755554443 44778888888887776666667
Q ss_pred ccCCCccEEEecCCccc
Q 046683 289 KYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 289 ~~~~~L~~L~l~~~~l~ 305 (329)
..+++|+.|++++|++.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 77788888888887764
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=6.9e-30 Score=229.67 Aligned_cols=304 Identities=22% Similarity=0.194 Sum_probs=162.1
Q ss_pred CCeeEEeecCCCCcCc----cCCcccccCCceeEEeecCCccCCCCchhc-CCCC----CCcEEecCCccccc----ccC
Q 046683 25 GRVINISLTNTGLSGT----LHDFSFSLFPHLAYLDLSFNELFGIIPPQI-GNLS----KLQLLSLHANAFSG----KIP 91 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~i~~----~~~ 91 (329)
+++++|++++|.+.+. ++. .+..+++|++|+++++.+.......+ ..++ +|++|++++|.+++ .++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 4566666766665521 222 45556666666666666553322222 2233 56666666666653 234
Q ss_pred cccccCCCccEEEeecCcCCCCCCC------CCCCCCccEEEccCCccccCC----CcccCCCCCCcEEEccCceeccc-
Q 046683 92 CEIFLLTHLKFLILHSNKLNGSIPP------LGNLNNLVKLFLLNNSLSGSI----PPDIGNLKSLSELDLSINQLSGS- 160 (329)
Q Consensus 92 ~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~- 160 (329)
..+..+++|++|++++|.+...... ....++|++|++++|.+.... +..+..+++|++|++++|.+.+.
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 5555666666666666655321110 122344555555555544321 22233344555555555444322
Q ss_pred --------------------------------CCccccCCCCccEEecCCcccCCCC-----CcCcCCCCCccEEEccCC
Q 046683 161 --------------------------------IPPSMGNLSNLNRLFLYDNLLYGSI-----PPNVGNLKSLLVLQLDEN 203 (329)
Q Consensus 161 --------------------------------~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~ 203 (329)
++..+..+++|++|++++|.+.+.. +.....+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 2233334455555555555443211 111123455666666655
Q ss_pred cCCCC----CCccccCCCCCcEEEccCccccCCCCcccc-----CCCcccEEEccCCccCCCCCCcc-cccccCCCceEE
Q 046683 204 QLSGC----IPRSFGNLTNLIQLFLSFNNLSGSIPREIG-----NLRSLVQLALDQNQFTGFLPPSL-GNICRGGALQYF 273 (329)
Q Consensus 204 ~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l-~~~~~~~~L~~L 273 (329)
.++.. .+..+..+++|++|++++|.+++.....+. ..++|++|++++|.+++.....+ ..+..+++|++|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 55432 233344456666666666655432222221 22466666666666653321111 112345788888
Q ss_pred eccCCcccccCCccccc-----CCCccEEEecCCcccc----chhhhhhhcCCCcEEEcCCcccC
Q 046683 274 GVSENHFQGTIPKSLKY-----CTSLFRVRVDGNNLTG----NISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 274 ~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
++++|.+.+..+..+.. .++|++|++++|++++ .++..+..+++|++|++++|+|+
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 88888776544443332 5788888888888886 66777888889999999988874
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.1e-24 Score=197.56 Aligned_cols=257 Identities=28% Similarity=0.374 Sum_probs=208.1
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
.++.|+++++.++ .+|. .+. ++|++|++++|.++.... .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 5899999999997 6776 332 799999999999885443 6789999999999988 5555 6899999999
Q ss_pred ecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCC
Q 046683 106 HSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSI 185 (329)
Q Consensus 106 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 185 (329)
++|.+...+. .+++|+.|++++|.+.. .+. .+++|++|++++|++.. ++. .+++|+.|.+++|.+.. +
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 9999886555 67899999999998874 333 34899999999999874 333 35789999999999875 3
Q ss_pred CcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccc
Q 046683 186 PPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNIC 265 (329)
Q Consensus 186 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 265 (329)
+ ..+++|+.|++++|.+.+. +. .+++|+.|.+++|.++. .+. .+++|+.|++++|.+.+ .+ .
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp------~ 238 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP------V 238 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC------C
T ss_pred c---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC------C
Confidence 3 4568999999999998853 32 24789999999999883 332 34789999999999885 33 2
Q ss_pred cCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 266 RGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 266 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
.+++|++|++++|.+. .+|. .+++|+.|++++|+++ .+|..+..+++|+.|+|++|+|+
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 3478999999999887 4554 5689999999999999 67888999999999999999875
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=5.5e-25 Score=183.64 Aligned_cols=215 Identities=27% Similarity=0.278 Sum_probs=146.2
Q ss_pred CCCceecceeecCCCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCccccccc
Q 046683 11 IRPCAWSGISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKI 90 (329)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 90 (329)
.++|.|.+..|...+..++++++++.++ .+|. .+ .+++++|+++++.+....+..|..+++|++|+++++.+....
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999999988778899999999987 5665 22 257999999999998877778889999999999999888444
Q ss_pred CcccccCCCccEEEeecCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCC
Q 046683 91 PCEIFLLTHLKFLILHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLS 169 (329)
Q Consensus 91 ~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 169 (329)
+..+..+++|++|++++|.+....+. +..+++|++|++++|.+....+..+..+++|++|++++|++....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 45567788888888888877765543 46667777777777766655555566666666666666666544444455556
Q ss_pred CccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccc
Q 046683 170 NLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNL 229 (329)
Q Consensus 170 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 229 (329)
+|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|++
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 666666665555544433444555555555555555544333444445555555555444
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=2.4e-29 Score=226.17 Aligned_cols=305 Identities=17% Similarity=0.105 Sum_probs=192.1
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCC----CchhcCCCCCCcEEecCCcccccccCcccc-cCC-
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGI----IPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLT- 98 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~~- 98 (329)
+++++|+++++.+++......+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46899999999987443332478999999999999998743 345677889999999999998754444333 344
Q ss_pred ---CccEEEeecCcCCCC-----CCCCCCCCCccEEEccCCccccCCCcc-----cCCCCCCcEEEccCceecccC----
Q 046683 99 ---HLKFLILHSNKLNGS-----IPPLGNLNNLVKLFLLNNSLSGSIPPD-----IGNLKSLSELDLSINQLSGSI---- 161 (329)
Q Consensus 99 ---~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~---- 161 (329)
+|++|++++|.+... ...+..+++|++|++++|.+....+.. ....++|++|++++|+++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 799999999988742 334788999999999999886433322 233568999999999887533
Q ss_pred CccccCCCCccEEecCCcccCCCCCcCcC-----CCCCccEEEccCCcCCCC----CCccccCCCCCcEEEccCccccCC
Q 046683 162 PPSMGNLSNLNRLFLYDNLLYGSIPPNVG-----NLKSLLVLQLDENQLSGC----IPRSFGNLTNLIQLFLSFNNLSGS 232 (329)
Q Consensus 162 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~ 232 (329)
+..+..+++|++|++++|.+.+.....+. ..++|++|++++|.+... .+..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45556678899999988876543222221 245777777777766643 233444556666666666655432
Q ss_pred C-----CccccCCCcccEEEccCCccCCCCCCccc-ccccCC-----------------------------CceEEeccC
Q 046683 233 I-----PREIGNLRSLVQLALDQNQFTGFLPPSLG-NICRGG-----------------------------ALQYFGVSE 277 (329)
Q Consensus 233 ~-----~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~~-----------------------------~L~~L~l~~ 277 (329)
. +..+..+++|++|++++|.++......+. .+..++ +|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 11122345566666666555432100010 111234 455555555
Q ss_pred Cccccc----CCcccccCCCccEEEecCCccccchhhhhhh-----cCCCcEEEcCCcccC
Q 046683 278 NHFQGT----IPKSLKYCTSLFRVRVDGNNLTGNISQALGI-----YHNLTFIDLSRNNFY 329 (329)
Q Consensus 278 ~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l~~n~~~ 329 (329)
|.+.+. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|+|+
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 544432 2233444566666666666666554444443 456666666666653
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9.6e-28 Score=205.04 Aligned_cols=258 Identities=21% Similarity=0.138 Sum_probs=159.3
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
.+...+++.+.+. ..+...+..+++|++|++++|.+....+..+..+++|++|++++|++.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4555666666664 3333356777889999999999888777788899999999999988874433 778888888888
Q ss_pred ecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCC
Q 046683 106 HSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSI 185 (329)
Q Consensus 106 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 185 (329)
++|.+.... ..++|++|++++|.+....+. .+++|++|++++|++....+..+..+++|++|++++|.+.+..
T Consensus 88 s~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred cCCcccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 888766432 336777777777776643322 2456777777777766555556666667777777776665443
Q ss_pred CcCc-CCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccc
Q 046683 186 PPNV-GNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNI 264 (329)
Q Consensus 186 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 264 (329)
+..+ ..+++|++|++++|.+.... ....+++|++|++++|.+++. +..+..+++|+.|++++|++.. .+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~--- 233 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKAL--- 233 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTC---
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHh---
Confidence 3333 24566666666666655331 122345666666666666532 2235555666666666665552 22222
Q ss_pred ccCCCceEEeccCCccc-ccCCcccccCCCccEEEec
Q 046683 265 CRGGALQYFGVSENHFQ-GTIPKSLKYCTSLFRVRVD 300 (329)
Q Consensus 265 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 300 (329)
..+++|+.|++++|.+. +..+..+..++.|+.+++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 23355555555555554 3444444555555555554
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.9e-24 Score=193.05 Aligned_cols=247 Identities=29% Similarity=0.399 Sum_probs=109.3
Q ss_pred ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccC
Q 046683 51 HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLN 130 (329)
Q Consensus 51 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 130 (329)
+|++|++++|.++.. + .+..+++|++|++++|++. .+|.. .++|++|++++|.+... +.+..+++|++|++++
T Consensus 132 ~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADN 204 (454)
T ss_dssp TCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCS
T ss_pred CCCEEECcCCCCCCC-c-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCcC-ccccCCCCCCEEECCC
Confidence 344444444444431 1 2444444444444444443 12221 12444444444444432 2344444444444444
Q ss_pred CccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCC
Q 046683 131 NSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIP 210 (329)
Q Consensus 131 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 210 (329)
|.+.. .+.. .++|++|++++|++. ..| .+..+++|++|++++|.+.+ .+. ..++|++|++++|.+.+. +
T Consensus 205 N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~ 273 (454)
T 1jl5_A 205 NSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-P 273 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-C
T ss_pred CcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-C
Confidence 44432 1111 124444444444444 223 24455555555555554442 111 123445555554444421 1
Q ss_pred ccccCCCCCcEEEccCccccC--CCCcc-------------ccCC-CcccEEEccCCccCCCCCCcccccccCCCceEEe
Q 046683 211 RSFGNLTNLIQLFLSFNNLSG--SIPRE-------------IGNL-RSLVQLALDQNQFTGFLPPSLGNICRGGALQYFG 274 (329)
Q Consensus 211 ~~l~~~~~L~~L~l~~~~~~~--~~~~~-------------~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~ 274 (329)
.. +++|+.|++++|.+++ ..+.. +... ++|++|++++|++.+ .+.. +++|++|+
T Consensus 274 ~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~------~~~L~~L~ 343 (454)
T 1jl5_A 274 EL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL------PPRLERLI 343 (454)
T ss_dssp CC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC------CTTCCEEE
T ss_pred cc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc------CCcCCEEE
Confidence 11 1344444444444432 11000 1111 356666666666653 2221 36777888
Q ss_pred ccCCcccccCCcccccCCCccEEEecCCcccc--chhhhhhhc-------------CCCcEEEcCCcccC
Q 046683 275 VSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG--NISQALGIY-------------HNLTFIDLSRNNFY 329 (329)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~-------------~~L~~L~l~~n~~~ 329 (329)
+++|++. .+|. .+++|+.|++++|++.+ .+|..+..+ ++|+.|++++|+++
T Consensus 344 L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 8877776 3444 35788888888888887 677777776 78888888888764
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.3e-23 Score=186.07 Aligned_cols=267 Identities=25% Similarity=0.302 Sum_probs=182.3
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++|+++++.+++ +|+ .+++|++|++++|.+..... ..++|++|++++|++.+ +| .+.++++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 457777777777664 443 23677777777777664321 12678888888888874 55 577888888888
Q ss_pred eecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC
Q 046683 105 LHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 105 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
+++|.+...+.. .++|++|++++|.+.. .+ .+..+++|++|++++|++.+ .|.. .++|++|++++|.+. .
T Consensus 160 l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 160 VDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-E 229 (454)
T ss_dssp CCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-S
T ss_pred CCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-c
Confidence 888887754332 3588888888888774 34 57888888888888888774 3332 257888888888877 4
Q ss_pred CCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCC--CCCCccc
Q 046683 185 IPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTG--FLPPSLG 262 (329)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~ 262 (329)
++ .+..+++|++|++++|.+.+. +. .+++|+.|++++|.+++ .+.. +++|++|++++|++.+ ..+..+.
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLY 300 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCC
T ss_pred cc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCC
Confidence 44 377888899999998888743 32 23788999999988874 3322 3678888888887764 1221111
Q ss_pred c----------cccC-CCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 263 N----------ICRG-GALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 263 ~----------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
. +... ++|++|++++|++.+ ++.. +++|+.|++++|+++ .+|. .+++|++|++++|+++
T Consensus 301 ~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp EEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred EEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCC
Confidence 1 1112 467777777777663 3332 477888888888887 3454 4678888888888764
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.1e-27 Score=200.54 Aligned_cols=257 Identities=18% Similarity=0.197 Sum_probs=165.6
Q ss_pred eeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCC
Q 046683 52 LAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNN 131 (329)
Q Consensus 52 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 131 (329)
++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 4444555555544444445566677777777777775555667777777777777777664433 667777777777777
Q ss_pred ccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCc
Q 046683 132 SLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPR 211 (329)
Q Consensus 132 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 211 (329)
.+.... ..++|++|++++|++....+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 765322 2367777777777766543332 46677777777777655555566667777777777777655444
Q ss_pred cc-cCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCccccc
Q 046683 212 SF-GNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKY 290 (329)
Q Consensus 212 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 290 (329)
.+ ..+++|++|++++|.+++. .....+++|++|++++|++.+.. ..+ ..+++|++|++++|.+. .++..+..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~-~~~---~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG-PEF---QSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC-GGG---GGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred HHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcch-hhh---cccCcccEEECcCCccc-chhhHhhc
Confidence 44 3567777777777777633 22234677777777777776432 222 34467777777777776 45556667
Q ss_pred CCCccEEEecCCccc-cchhhhhhhcCCCcEEEcC
Q 046683 291 CTSLFRVRVDGNNLT-GNISQALGIYHNLTFIDLS 324 (329)
Q Consensus 291 ~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~ 324 (329)
+++|+.|++++|++. +..+..+..+++|+.++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 777777777777776 5666666666666666655
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.4e-26 Score=197.27 Aligned_cols=248 Identities=21% Similarity=0.192 Sum_probs=129.5
Q ss_pred ccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccc-cccCcccc-------cCCCccEEEeecCcCCCCCC-
Q 046683 45 SFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFS-GKIPCEIF-------LLTHLKFLILHSNKLNGSIP- 115 (329)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~- 115 (329)
.+...++|++++++++.+ ..+..+... |+.|+++++.+. ...+..+. ++++|++|++++|.+.+..+
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345667788888888887 333433332 777888887774 33444443 57788888888887765333
Q ss_pred CC--CCCCCccEEEccCCccccCCCcccCCC-----CCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC--CC
Q 046683 116 PL--GNLNNLVKLFLLNNSLSGSIPPDIGNL-----KSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS--IP 186 (329)
Q Consensus 116 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~ 186 (329)
.+ ..+++|++|++++|.+... +..+..+ ++|++|++++|++....+..+..+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 23 6677777777777776644 4444443 5666666666666655555666666666666666654321 01
Q ss_pred cC--cCCCCCccEEEccCCcCCCC---CCccccCCCCCcEEEccCccccCCCC-ccccCCCcccEEEccCCccCCCCCCc
Q 046683 187 PN--VGNLKSLLVLQLDENQLSGC---IPRSFGNLTNLIQLFLSFNNLSGSIP-REIGNLRSLVQLALDQNQFTGFLPPS 260 (329)
Q Consensus 187 ~~--~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~ 260 (329)
.. +..+++|++|++++|.+.+. ....+..+++|++|++++|.+++..+ ..+..+++|++|++++|.++ ..+..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 11 14445555555555555421 11122334455555555555543332 23333444555555554444 22222
Q ss_pred ccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccc
Q 046683 261 LGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 261 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 305 (329)
+. ++|++|++++|++.+. |. +..+++|+.|++++|+++
T Consensus 272 ~~-----~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP-----AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC-----SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cc-----CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 21 3444444444444322 22 334444444444444443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.7e-27 Score=200.28 Aligned_cols=249 Identities=18% Similarity=0.162 Sum_probs=199.2
Q ss_pred hcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCC-CCCC-CC-------CCCCccEEEccCCccccCCCc
Q 046683 69 QIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNG-SIPP-LG-------NLNNLVKLFLLNNSLSGSIPP 139 (329)
Q Consensus 69 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~-------~~~~L~~L~l~~~~~~~~~~~ 139 (329)
.++..++|+.|+++++.+ ..|..+... |+.|+++++.+.. ..+. .. .+++|++|++++|.+....+.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345667889999999988 556655443 8888888887743 2221 22 589999999999999877776
Q ss_pred cc--CCCCCCcEEEccCceecccCCccccCC-----CCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCC--CC
Q 046683 140 DI--GNLKSLSELDLSINQLSGSIPPSMGNL-----SNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGC--IP 210 (329)
Q Consensus 140 ~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~ 210 (329)
.+ ..+++|++|++++|++.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 65 8999999999999999866 7777766 8999999999999987778899999999999999987543 12
Q ss_pred cc--ccCCCCCcEEEccCccccCC---CCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCC
Q 046683 211 RS--FGNLTNLIQLFLSFNNLSGS---IPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIP 285 (329)
Q Consensus 211 ~~--l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~ 285 (329)
.. +..+++|++|++++|.+++. ....+..+++|++|++++|++.+..+. ..+..+++|++|++++|.+. .+|
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hhhhhcCCCCEEECCCCccC-hhh
Confidence 22 37789999999999998731 223445779999999999999865421 12234589999999999998 667
Q ss_pred cccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 286 KSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 286 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
..+. ++|+.|++++|++++. |. +..+++|++|++++|+|+
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 6665 8999999999999966 55 899999999999999985
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.7e-24 Score=178.10 Aligned_cols=222 Identities=23% Similarity=0.206 Sum_probs=163.6
Q ss_pred EecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCcee
Q 046683 79 LSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQL 157 (329)
Q Consensus 79 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 157 (329)
.+..+..+. .+|..+ .++|++|+++++.+....+ .+..+++|++|++++|.+....+..+..+++|++|++++|++
T Consensus 12 ~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 333343443 445443 3578888888888876655 577888888888888888766777788888888888888888
Q ss_pred cccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCC-CCccccCCCCCcEEEccCccccCCCCcc
Q 046683 158 SGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGC-IPRSFGNLTNLIQLFLSFNNLSGSIPRE 236 (329)
Q Consensus 158 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 236 (329)
....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 777777788888888888888888766555677888888888888887753 4667777888888888888887665566
Q ss_pred ccCCCccc----EEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccc
Q 046683 237 IGNLRSLV----QLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGN 307 (329)
Q Consensus 237 ~~~~~~L~----~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 307 (329)
+..++.|+ +|++++|++.+..+..+. ..+|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK----EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSC----SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred hhhhhhccccceeeecCCCcccccCccccC----CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 66666666 788888887754433332 23788888888888765556667788888888888888754
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-25 Score=200.64 Aligned_cols=196 Identities=21% Similarity=0.139 Sum_probs=110.0
Q ss_pred ccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEE
Q 046683 47 SLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKL 126 (329)
Q Consensus 47 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 126 (329)
..+++|++|++++|.+....+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+...+ ..++|+.|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEE
Confidence 445578888888888877777777888888888888887764433 667777777777777665332 22566666
Q ss_pred EccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcC-CCCCccEEEccCCcC
Q 046683 127 FLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVG-NLKSLLVLQLDENQL 205 (329)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 205 (329)
++++|.+....+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 6666665533222 234556666666555554455555555555555555555443333332 345555555555554
Q ss_pred CCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccC
Q 046683 206 SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
.+..+ ...+++|+.|++++|.+++. +..+..+++|+.|++++|.+.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC
T ss_pred ccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc
Confidence 43211 12244455555555544422 222444444444444444444
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=2.4e-22 Score=185.03 Aligned_cols=248 Identities=27% Similarity=0.306 Sum_probs=203.7
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++|++++|.++ .+|. .+++|++|++++|.++.... .+++|++|++++|.++ .++. .+++|+.|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT-HLPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCC-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCC-CCCC---CCCCcCEEE
Confidence 57999999999987 5655 57899999999999886443 7799999999999988 4454 578999999
Q ss_pred eecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC
Q 046683 105 LHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 105 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
+++|.+...+.. +++|++|++++|.+... +. .+++|+.|++.+|.++. +| ..+++|+.|++++|.+.+
T Consensus 128 L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 128 IFGNQLTSLPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp CCSSCCSCCCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred CCCCCCCcCCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence 999998865543 48999999999988743 32 35789999999999885 44 457899999999999874
Q ss_pred CCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccccc
Q 046683 185 IPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNI 264 (329)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 264 (329)
++. ..++|+.|++++|.+... +. .+++|+.|++++|.+++ .+ ..+++|+.|++++|.+.. .+.
T Consensus 196 l~~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~----- 258 (622)
T 3g06_A 196 LPT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM----- 258 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-----
T ss_pred CCC---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc-----
Confidence 332 347999999999998843 32 24789999999999985 33 456899999999999984 333
Q ss_pred ccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcC
Q 046683 265 CRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYH 316 (329)
Q Consensus 265 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 316 (329)
.+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+..+..++
T Consensus 259 -~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp -CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred -ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 3478999999999998 7788899999999999999999998888777654
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.8e-23 Score=170.58 Aligned_cols=204 Identities=25% Similarity=0.234 Sum_probs=165.6
Q ss_pred CCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecC
Q 046683 98 THLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLY 177 (329)
Q Consensus 98 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 177 (329)
...+.++++++.+...+..+. +++++|+++++.+....+..+..+++|++|++++|++....+..+..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357789998888876554443 689999999998887777788899999999999998886666667888999999999
Q ss_pred CcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCC
Q 046683 178 DNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFL 257 (329)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 257 (329)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 99888766667788889999999999888777777888899999999999888666667888899999999999887654
Q ss_pred CCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc
Q 046683 258 PPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG 306 (329)
Q Consensus 258 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 306 (329)
+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 174 ~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 174 EGAFD---KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhHhc---cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 44443 45789999999988886656667888899999999988754
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.4e-24 Score=192.51 Aligned_cols=237 Identities=19% Similarity=0.223 Sum_probs=192.5
Q ss_pred CCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEE
Q 046683 72 NLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELD 151 (329)
Q Consensus 72 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 151 (329)
.+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+.... ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 44589999999999997667789999999999999998876554 888999999999999887432 238999999
Q ss_pred ccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCcccc-CCCCCcEEEccCcccc
Q 046683 152 LSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFG-NLTNLIQLFLSFNNLS 230 (329)
Q Consensus 152 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~ 230 (329)
+++|.+....+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999998865543 357899999999999877677778889999999999998876666665 6889999999999988
Q ss_pred CCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccc-cchh
Q 046683 231 GSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLT-GNIS 309 (329)
Q Consensus 231 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~ 309 (329)
+. .....+++|+.|++++|.+.+..+ .+ ..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +..|
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~---~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 183 DV--KGQVVFAKLKTLDLSSNKLAFMGP-EF---QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCEECG-GG---GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cc--cccccCCCCCEEECCCCCCCCCCH-hH---cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 54 233468899999999999985433 23 35589999999999988 46777888899999999999998 6677
Q ss_pred hhhhhcCCCcEEEcC
Q 046683 310 QALGIYHNLTFIDLS 324 (329)
Q Consensus 310 ~~~~~~~~L~~L~l~ 324 (329)
..+..++.|+.++++
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 778888877777664
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.4e-23 Score=171.00 Aligned_cols=221 Identities=22% Similarity=0.206 Sum_probs=166.9
Q ss_pred EeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCcc
Q 046683 55 LDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNSL 133 (329)
Q Consensus 55 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 133 (329)
++..+..+...+ ..+ .++|++|+++++.+++..+..+.++++|++|++++|.+....+ .+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip-~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIP-DNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCC-SSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccC-CCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444332 222 2578899999988886555678888999999999888876554 478888999999999888
Q ss_pred ccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC-CCcCcCCCCCccEEEccCCcCCCCCCcc
Q 046683 134 SGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS-IPPNVGNLKSLLVLQLDENQLSGCIPRS 212 (329)
Q Consensus 134 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 212 (329)
....+..+..+++|++|++.+|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 877777888889999999998888866666788888999999999888753 4667788889999999999888666666
Q ss_pred ccCCCCCc----EEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccc
Q 046683 213 FGNLTNLI----QLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQG 282 (329)
Q Consensus 213 l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 282 (329)
+..+++|+ .+++++|.+++..+..+. ..+|++|++++|++.+..+..+ ..+++|++|++++|.+..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF---DRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT---TTCCSCCEEECCSSCBCC
T ss_pred hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHh---cccccccEEEccCCcccc
Confidence 66556665 788888888755554443 3588999999998875544333 355788899999888763
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2e-22 Score=169.62 Aligned_cols=198 Identities=24% Similarity=0.183 Sum_probs=97.4
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
+++++++++++.++ .+|. .+ .+++++|++++|.+....+..+..+++|++|++++|.++.. +.. ..+++|++|+
T Consensus 10 ~~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEE
T ss_pred CCccEEECCCCCCC-cCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEE
Confidence 45556666665554 3443 11 14556666666665554445555666666666666555522 211 4455555555
Q ss_pred eecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC
Q 046683 105 LHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 105 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
+++|.+...+..+..+++|++|++++|.+....+..+..+++|++|++++|++....+..+..+++|+.|++++|.+...
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 55555554444444555555555555555544444455555555555555555444444444445555555555544433
Q ss_pred CCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccc
Q 046683 185 IPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNL 229 (329)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 229 (329)
.+..+..+++|++|++++|.+.. .+..+...++|+.+++++|++
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCc
Confidence 33333444445555554444442 222233334444444444443
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=8e-23 Score=170.66 Aligned_cols=207 Identities=27% Similarity=0.265 Sum_probs=109.9
Q ss_pred CCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEE
Q 046683 72 NLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELD 151 (329)
Q Consensus 72 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 151 (329)
.+++|+.|+++++.+. . ...+..+++|++|++++|.+... +.+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-S-VQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCC-C-CTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcc-c-ccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3444555555544443 1 12344455555555555544432 2344455555555555555444444455555555555
Q ss_pred ccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccC
Q 046683 152 LSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSG 231 (329)
Q Consensus 152 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 231 (329)
+++|++....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 55555554444445555566666666665554444444555666666666666655444445556666666666666665
Q ss_pred CCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccC
Q 046683 232 SIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYC 291 (329)
Q Consensus 232 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 291 (329)
..+..+..+++|+.|++++|++.+ .+++++.+++..|.+.+.+|..+..+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDC----------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC----------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCHHHHhCCcCCCEEEccCCCccc----------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 555555566666666666665542 23455555555555555555554433
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9.5e-23 Score=170.20 Aligned_cols=228 Identities=25% Similarity=0.260 Sum_probs=189.4
Q ss_pred CCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccC
Q 046683 75 KLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSI 154 (329)
Q Consensus 75 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 154 (329)
.+..+.+.++.+.+. .....+++|+.|+++++.+. ..+.+..+++|++|++++|.+... ..+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 334455555554422 34557899999999999877 445688899999999999998743 4788999999999999
Q ss_pred ceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCC
Q 046683 155 NQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIP 234 (329)
Q Consensus 155 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 234 (329)
|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 99997777778999999999999999987777678899999999999999997777778899999999999999997777
Q ss_pred ccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhh
Q 046683 235 REIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGI 314 (329)
Q Consensus 235 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 314 (329)
..+..+++|++|++++|++.+..+..+. .+++|++|++++|.+. +.+++++.+++..|.+.|.+|..++.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFD---RLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTT---TCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHh---CCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 7788999999999999999866554443 5689999999999775 44678999999999999998887776
Q ss_pred cCC
Q 046683 315 YHN 317 (329)
Q Consensus 315 ~~~ 317 (329)
++.
T Consensus 245 ~~~ 247 (272)
T 3rfs_A 245 VAP 247 (272)
T ss_dssp BCG
T ss_pred cCC
Confidence 553
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.1e-21 Score=163.40 Aligned_cols=205 Identities=25% Similarity=0.221 Sum_probs=180.0
Q ss_pred cccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCc
Q 046683 44 FSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNL 123 (329)
Q Consensus 44 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 123 (329)
..++.++++++++++++.++..+.. + .++++.|++++|.+.+..+..+..+++|++|++++|.+...... ..+++|
T Consensus 4 C~~~~l~~l~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNLTALPPD-L--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp SEEECSTTCCEEECTTSCCSSCCSC-C--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccccCCccEEECCCCCCCcCCCC-C--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 3578899999999999998865433 2 26899999999999977778899999999999999998865443 789999
Q ss_pred cEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCC
Q 046683 124 VKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDEN 203 (329)
Q Consensus 124 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (329)
++|++++|.+. ..+..+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999988 56777889999999999999999777788999999999999999998777777888999999999999
Q ss_pred cCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccC
Q 046683 204 QLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 204 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
.+.+..+..+..+++|+.|++++|.++ ..+..+...+.|+.+.+++|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 999777777888999999999999998 56666677789999999999986
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.7e-25 Score=190.03 Aligned_cols=237 Identities=18% Similarity=0.170 Sum_probs=153.5
Q ss_pred cCCCCc-eecceeecCCCCeeEEeecCCCCcCccCCcccccC--CceeEEeecCCccCCCCchhcCCCCCCcEEecCCcc
Q 046683 9 SKIRPC-AWSGISCNDAGRVINISLTNTGLSGTLHDFSFSLF--PHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANA 85 (329)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 85 (329)
....+| +|....+. ...+++++++++.+.+ ..+..+ ++++.++++++.+....+. +..+++|++|++++|.
T Consensus 31 ~~~~vc~~W~~~~~~-~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 31 KVSGVCKRWYRLASD-ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp HTTSSCHHHHHHHTC-STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE
T ss_pred HHHHHHHHHHHHhcC-chhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC
Confidence 345666 88887764 3458899999887752 256666 8999999999988866554 4578999999999998
Q ss_pred cccc-cCcccccCCCccEEEeecCcCCCCC-CCCCCCCCccEEEccCC-ccccC-CCcccCCCCCCcEEEccCc-eeccc
Q 046683 86 FSGK-IPCEIFLLTHLKFLILHSNKLNGSI-PPLGNLNNLVKLFLLNN-SLSGS-IPPDIGNLKSLSELDLSIN-QLSGS 160 (329)
Q Consensus 86 i~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~ 160 (329)
+.+. .+..+..+++|++|++++|.+.+.. ..+..+++|++|++++| .+... .+..+..+++|++|++++| .+++.
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 8754 6667788999999999988765322 23556778888888877 45431 3444566777777777777 65532
Q ss_pred -CCccccCCC-CccEEecCCcc--cC-CCCCcCcCCCCCccEEEccCCc-CCCCCCccccCCCCCcEEEccCcc-ccCCC
Q 046683 161 -IPPSMGNLS-NLNRLFLYDNL--LY-GSIPPNVGNLKSLLVLQLDENQ-LSGCIPRSFGNLTNLIQLFLSFNN-LSGSI 233 (329)
Q Consensus 161 -~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~ 233 (329)
.+..+..++ +|++|++++|. +. ...+..+..+++|++|++++|. ++...+..+..+++|++|++++|. +....
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 344455666 77777777763 32 1122233455666666666666 443444455555666666666663 22222
Q ss_pred CccccCCCcccEEEccCC
Q 046683 234 PREIGNLRSLVQLALDQN 251 (329)
Q Consensus 234 ~~~~~~~~~L~~L~l~~~ 251 (329)
...+..+++|++|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 224455666666666665
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.6e-21 Score=157.59 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=123.0
Q ss_pred ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcc-cccccCcccccCCCccEEEeec-CcCCCCCC-CCCCCCCccEEE
Q 046683 51 HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANA-FSGKIPCEIFLLTHLKFLILHS-NKLNGSIP-PLGNLNNLVKLF 127 (329)
Q Consensus 51 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~ 127 (329)
++++|+++++.++...+..|..+++|++|++++|. ++...+.+|.++++|++|++++ +.+....+ .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56677777666665555566666777777776664 5534444566666777777766 66654443 355666777777
Q ss_pred ccCCccccCCCcccCCCCCCc---EEEccCc-eecccCCccccCCCCcc-EEecCCcccCCCCCcCcCCCCCccEEEccC
Q 046683 128 LLNNSLSGSIPPDIGNLKSLS---ELDLSIN-QLSGSIPPSMGNLSNLN-RLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202 (329)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (329)
+++|.+.. .+. +..+++|+ +|++++| ++....+..+..+++|+ +|++++|.+.......+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 76666653 333 55666666 7777777 66655555666777777 7777777666333333333 6777777777
Q ss_pred Cc-CCCCCCccccCC-CCCcEEEccCccccCCCCccccCCCcccEEEccCC
Q 046683 203 NQ-LSGCIPRSFGNL-TNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251 (329)
Q Consensus 203 ~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 251 (329)
|. +....+..+..+ ++|+.|++++|.++..... .+++|+.|.++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 74 665555666677 7777777777777633322 4567777777665
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.9e-24 Score=182.71 Aligned_cols=221 Identities=20% Similarity=0.173 Sum_probs=96.9
Q ss_pred eeEEeecCCccCCCCchhcCCC--CCCcEEecCCcccccccCcccccCCCccEEEeecCcCCC--CCCCCCCCCCccEEE
Q 046683 52 LAYLDLSFNELFGIIPPQIGNL--SKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNG--SIPPLGNLNNLVKLF 127 (329)
Q Consensus 52 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~ 127 (329)
+++++++++.+. +..+..+ ++++.|+++++.+.+..+ .+..+++|++|++++|.+.. ....+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555554433 2223333 455555555555443322 23345555555555554332 111234455555555
Q ss_pred ccCCccccCCCcccCCCCCCcEEEccCc-eeccc-CCccccCCCCccEEecCCc-ccCCC-CCcCcCCCC-CccEEEccC
Q 046683 128 LLNNSLSGSIPPDIGNLKSLSELDLSIN-QLSGS-IPPSMGNLSNLNRLFLYDN-LLYGS-IPPNVGNLK-SLLVLQLDE 202 (329)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~ 202 (329)
+++|.+....+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+.+. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 5555444333444444555555555555 33321 2333444555555555555 44321 122233444 555555555
Q ss_pred Cc--CC-CCCCccccCCCCCcEEEccCcc-ccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCC
Q 046683 203 NQ--LS-GCIPRSFGNLTNLIQLFLSFNN-LSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSEN 278 (329)
Q Consensus 203 ~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~ 278 (329)
|. ++ ...+..+..+++|+.|++++|. +++..+..+..+++|++|++++|. ...+..+..+..+++|++|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc
Confidence 52 22 1122233344555555555554 333333444445555555555553 111222222334455555555544
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=5.2e-24 Score=185.27 Aligned_cols=257 Identities=18% Similarity=0.099 Sum_probs=174.3
Q ss_pred EeecCCccCCCCchhcCCCCCCcEEecCCcccccccC----cccccCC-CccEEEeecCcCCCCCCC-CCC-----CCCc
Q 046683 55 LDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIP----CEIFLLT-HLKFLILHSNKLNGSIPP-LGN-----LNNL 123 (329)
Q Consensus 55 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~-~~~-----~~~L 123 (329)
++++.+.+.+.++..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+...... +.. +++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888887777766777779999999999885555 6677788 899999999988755432 222 2889
Q ss_pred cEEEccCCccccCCCcc----cCCC-CCCcEEEccCceecccCCccc----cC-CCCccEEecCCcccCCCCCcC----c
Q 046683 124 VKLFLLNNSLSGSIPPD----IGNL-KSLSELDLSINQLSGSIPPSM----GN-LSNLNRLFLYDNLLYGSIPPN----V 189 (329)
Q Consensus 124 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~~~----~ 189 (329)
++|++++|.+....+.. +..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+.+..... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999998887555443 3444 788999999888876544443 23 358888888888877433222 2
Q ss_pred CCCC-CccEEEccCCcCCCCCCcc----ccCC-CCCcEEEccCccccCCC----CccccC-CCcccEEEccCCccCCCCC
Q 046683 190 GNLK-SLLVLQLDENQLSGCIPRS----FGNL-TNLIQLFLSFNNLSGSI----PREIGN-LRSLVQLALDQNQFTGFLP 258 (329)
Q Consensus 190 ~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~l~~~~~ 258 (329)
...+ +|++|++++|.+.+..+.. +..+ ++|+.|++++|.+++.. +..+.. .++|++|++++|++.+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 8888888888887555432 3344 48888888888887532 223333 4588888888888875544
Q ss_pred Ccccc-cccCCCceEEeccCCcccc-------cCCcccccCCCccEEEecCCccccchhhh
Q 046683 259 PSLGN-ICRGGALQYFGVSENHFQG-------TIPKSLKYCTSLFRVRVDGNNLTGNISQA 311 (329)
Q Consensus 259 ~~l~~-~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 311 (329)
..+.. +..+++|++|++++|.+.+ .++..+..+++|+.|++++|++.+..+..
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 33222 2455778888888887432 22234566777888888888887654433
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=2.2e-24 Score=199.82 Aligned_cols=302 Identities=14% Similarity=0.091 Sum_probs=179.1
Q ss_pred CCCeeEEeecCCCCcCc----cCCcccccCCceeEEeecCCccCCC----CchhcCCCCCCcEEecCCcccccccCcccc
Q 046683 24 AGRVINISLTNTGLSGT----LHDFSFSLFPHLAYLDLSFNELFGI----IPPQIGNLSKLQLLSLHANAFSGKIPCEIF 95 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 95 (329)
.+++++|++++|.+++. ++. ....+++|++|+++++.+... ....+..+++|+.|++++|.+. ..+..+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh
Confidence 36899999999987644 222 457789999999999887633 2333467899999999998876 4566677
Q ss_pred cCCCccEEEeecCcCC----CCCCCCCC-----------------------CCCccEEEccCCccccCCC-cccCCCCCC
Q 046683 96 LLTHLKFLILHSNKLN----GSIPPLGN-----------------------LNNLVKLFLLNNSLSGSIP-PDIGNLKSL 147 (329)
Q Consensus 96 ~~~~L~~L~l~~~~~~----~~~~~~~~-----------------------~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 147 (329)
.+++|+.|+++..... .....+.. +++|++|++++|.+..... ..+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 7888888888643221 11112333 4455555555544321111 223445555
Q ss_pred cEEEccCceecccCCccccCCCCccEEecCC----------c-ccCCC-CCcCcCCCCCccEEEccCCcCCCCCCccccC
Q 046683 148 SELDLSINQLSGSIPPSMGNLSNLNRLFLYD----------N-LLYGS-IPPNVGNLKSLLVLQLDENQLSGCIPRSFGN 215 (329)
Q Consensus 148 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~----------~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 215 (329)
++|++.++......+.....+++|++|++++ + .+.+. .......+++|++|++..+.+++.....+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 5555542211111222223455666666662 2 22211 0001123566777776555555333333332
Q ss_pred -CCCCcEEEcc----CccccCC-----CCccccCCCcccEEEccCCc--cCCCCCCcccccccCCCceEEeccCCccccc
Q 046683 216 -LTNLIQLFLS----FNNLSGS-----IPREIGNLRSLVQLALDQNQ--FTGFLPPSLGNICRGGALQYFGVSENHFQGT 283 (329)
Q Consensus 216 -~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~ 283 (329)
+++|+.|++. .+.+++. .+..+..+++|++|++++|. +++.....+. ..+++|++|++++|.+++.
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--QYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--HSCTTCCEEEECSCCSSHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--HhCccceEeeccCCCCCHH
Confidence 6677777775 3344432 11224567788888886543 3322222221 2357899999999988753
Q ss_pred -CCcccccCCCccEEEecCCccccc-hhhhhhhcCCCcEEEcCCcccC
Q 046683 284 -IPKSLKYCTSLFRVRVDGNNLTGN-ISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 284 -~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
.+..+..+++|+.|++++|.+++. .+..+..+++|++|++++|+++
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 344557889999999999998765 4445567999999999999875
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.4e-21 Score=166.04 Aligned_cols=195 Identities=24% Similarity=0.313 Sum_probs=143.1
Q ss_pred cccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccE
Q 046683 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVK 125 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 125 (329)
...+++|++|+++++.+.... .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+... +.+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-hhhcCCCCCCE
Confidence 456778888888888777542 467788888888888877733 33 77788888888888877654 45777888888
Q ss_pred EEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcC
Q 046683 126 LFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQL 205 (329)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (329)
|++++|.+.... .+..+++|++|++++|++....+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 888888776432 37778888888888887764433 6777888888888887764332 67778888888888887
Q ss_pred CCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCC
Q 046683 206 SGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTG 255 (329)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 255 (329)
.+..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|++.+
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 75433 667788888888888887433 36778888888888888764
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=8.6e-24 Score=183.88 Aligned_cols=255 Identities=21% Similarity=0.185 Sum_probs=188.6
Q ss_pred EEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCc----hhcCCCC-CCcEEecCCcccccccCcccccC-----C
Q 046683 29 NISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIP----PQIGNLS-KLQLLSLHANAFSGKIPCEIFLL-----T 98 (329)
Q Consensus 29 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~-----~ 98 (329)
.+.++.+.+++.++. .+...++|++|++++|.+..... ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 457788888876665 45555669999999999887766 6777888 89999999999886666666654 8
Q ss_pred CccEEEeecCcCCCCCCC-----CCCC-CCccEEEccCCccccCCCcc----cCC-CCCCcEEEccCceecccC----Cc
Q 046683 99 HLKFLILHSNKLNGSIPP-----LGNL-NNLVKLFLLNNSLSGSIPPD----IGN-LKSLSELDLSINQLSGSI----PP 163 (329)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~----~~ 163 (329)
+|++|++++|.+...... +..+ ++|++|++++|.+....+.. +.. .++|++|++++|++++.. +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 999999999988765443 4455 79999999999987655543 334 369999999999987533 33
Q ss_pred cccCCC-CccEEecCCcccCCCCCcC----cCCC-CCccEEEccCCcCCCCCC----ccccC-CCCCcEEEccCccccCC
Q 046683 164 SMGNLS-NLNRLFLYDNLLYGSIPPN----VGNL-KSLLVLQLDENQLSGCIP----RSFGN-LTNLIQLFLSFNNLSGS 232 (329)
Q Consensus 164 ~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~----~~l~~-~~~L~~L~l~~~~~~~~ 232 (329)
.+...+ +|++|++++|.+.+..+.. +... ++|++|++++|.+..... ..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 444555 8999999999987654432 3344 599999999999885432 33333 46999999999999865
Q ss_pred CC----ccccCCCcccEEEccCCccCCCCCCcc----cccccCCCceEEeccCCcccccC
Q 046683 233 IP----REIGNLRSLVQLALDQNQFTGFLPPSL----GNICRGGALQYFGVSENHFQGTI 284 (329)
Q Consensus 233 ~~----~~~~~~~~L~~L~l~~~~l~~~~~~~l----~~~~~~~~L~~L~l~~~~~~~~~ 284 (329)
.. ..+..+++|+.|++++|.+.......+ ..+..+++|++|++++|++.+..
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 44 345677899999999998654332222 12446688999999999987553
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1e-20 Score=155.93 Aligned_cols=189 Identities=25% Similarity=0.242 Sum_probs=132.4
Q ss_pred CCceecceeecCCCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccC
Q 046683 12 RPCAWSGISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIP 91 (329)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 91 (329)
.|+.|.|-.|. ...++++++++.++ .+|. .+. +.+++|+++++.+....+..+..+++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~--~~~~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN--EGKKEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE--GGGTEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC--CCCeEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 35588877774 35678899988886 5665 232 588999999999888777788889999999999998886666
Q ss_pred cccccCCCccEEEeecCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCC
Q 046683 92 CEIFLLTHLKFLILHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSN 170 (329)
Q Consensus 92 ~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 170 (329)
..+..+++|++|++++|.+....+. +..+++|++|++++|.+....+..+..+++|++|++++|++....+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 6778888888888888887765543 566777777777777766555555666666666666666666554445666666
Q ss_pred ccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCC
Q 046683 171 LNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLS 206 (329)
Q Consensus 171 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 206 (329)
|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 666666666665544445555566666666666554
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=5.4e-22 Score=168.87 Aligned_cols=229 Identities=19% Similarity=0.152 Sum_probs=118.0
Q ss_pred CCcEEecCCcccccccCc---ccccCCCccEEEeecCcCCCCCCC-C--CCCCCccEEEccCCccccCCCcccCCCCCCc
Q 046683 75 KLQLLSLHANAFSGKIPC---EIFLLTHLKFLILHSNKLNGSIPP-L--GNLNNLVKLFLLNNSLSGSIPPDIGNLKSLS 148 (329)
Q Consensus 75 ~L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~-~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 148 (329)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..+. + ..+++|++|++++|.+....+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~-------- 136 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL-------- 136 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------
Confidence 456666666555421111 112345577777777766544432 2 55666666666666554321100
Q ss_pred EEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCC----CCccccCCCCCcEEEc
Q 046683 149 ELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGC----IPRSFGNLTNLIQLFL 224 (329)
Q Consensus 149 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l 224 (329)
....+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. ....+..+++|++|++
T Consensus 137 ------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 137 ------------AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp ------------HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred ------------HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 001122344455555555544444444444555555555555543321 0112234556666666
Q ss_pred cCccccCCCCc----cccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEec
Q 046683 225 SFNNLSGSIPR----EIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVD 300 (329)
Q Consensus 225 ~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 300 (329)
++|.++. .+. .+..+++|++|++++|++.+..+..+..+..+++|++|++++|++. .+|..+. ++|+.|+++
T Consensus 205 s~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 205 RNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred CCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 6665541 111 2345566666666666666544444444333456666666666666 4444433 567777777
Q ss_pred CCccccchhhhhhhcCCCcEEEcCCcccC
Q 046683 301 GNNLTGNISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 301 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+|++++. |. +..+++|+.|++++|+|+
T Consensus 281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 7777643 22 456677777777777764
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.1e-21 Score=162.50 Aligned_cols=195 Identities=26% Similarity=0.332 Sum_probs=161.3
Q ss_pred cccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccE
Q 046683 94 IFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNR 173 (329)
Q Consensus 94 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 173 (329)
...+++|++|+++++.+... +.+..+++|++|++++|.+....+ +..+++|++|++++|++... ..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 44688999999999988754 468889999999999998875544 88999999999999998753 36888999999
Q ss_pred EecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCcc
Q 046683 174 LFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQF 253 (329)
Q Consensus 174 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 253 (329)
|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. +. +..+++|+.|++++|++
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCcc
Confidence 99999998754 2 37889999999999999885433 77889999999999998843 32 78899999999999998
Q ss_pred CCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc
Q 046683 254 TGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG 306 (329)
Q Consensus 254 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 306 (329)
.+..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|++++
T Consensus 186 ~~~~~-----l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP-----LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG-----GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh-----hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 74322 456789999999999987544 37888999999999999875
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.4e-24 Score=187.43 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=152.1
Q ss_pred CchhcCCCCCCcEEecCCcccccccC----cccccCCCccEEEeecCcCCCCCC----C-------CCCCCCccEEEccC
Q 046683 66 IPPQIGNLSKLQLLSLHANAFSGKIP----CEIFLLTHLKFLILHSNKLNGSIP----P-------LGNLNNLVKLFLLN 130 (329)
Q Consensus 66 ~~~~~~~l~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~-------~~~~~~L~~L~l~~ 130 (329)
....+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+..... . +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34566778999999999998885533 346678999999999876543221 1 35678888888888
Q ss_pred Ccccc----CCCcccCCCCCCcEEEccCceecccCCcc----ccCC---------CCccEEecCCcccCCC-CC---cCc
Q 046683 131 NSLSG----SIPPDIGNLKSLSELDLSINQLSGSIPPS----MGNL---------SNLNRLFLYDNLLYGS-IP---PNV 189 (329)
Q Consensus 131 ~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~---------~~L~~L~l~~~~~~~~-~~---~~~ 189 (329)
|.+.. ..+..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.+.+. .+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 87764 24445677788888888888775332222 2233 6777777777776521 11 133
Q ss_pred CCCCCccEEEccCCcCCCC-----CCccccCCCCCcEEEccCcccc----CCCCccccCCCcccEEEccCCccCCCCCCc
Q 046683 190 GNLKSLLVLQLDENQLSGC-----IPRSFGNLTNLIQLFLSFNNLS----GSIPREIGNLRSLVQLALDQNQFTGFLPPS 260 (329)
Q Consensus 190 ~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 260 (329)
..+++|++|++++|.+... .+..+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+.+.....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 4566777777777766521 1224556677777777777664 334455666677777777777765331111
Q ss_pred ccc-c--ccCCCceEEeccCCcccc----cCCccc-ccCCCccEEEecCCccccch
Q 046683 261 LGN-I--CRGGALQYFGVSENHFQG----TIPKSL-KYCTSLFRVRVDGNNLTGNI 308 (329)
Q Consensus 261 l~~-~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~l~~~~ 308 (329)
+.. + ..+++|++|++++|.+.+ .++..+ .++++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 111 1 124667777777776664 244444 44667777777777776544
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.8e-20 Score=154.49 Aligned_cols=181 Identities=24% Similarity=0.247 Sum_probs=147.0
Q ss_pred CCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEc
Q 046683 121 NNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQL 200 (329)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 200 (329)
...+.++++++.+. ..|..+. +.++.|+++++++....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888776 4444443 57899999999988777778888999999999999888777777888899999999
Q ss_pred cCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcc
Q 046683 201 DENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHF 280 (329)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~ 280 (329)
++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+. .+++|++|++++|++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD---KLTNLQTLSLSTNQL 167 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC---cCcCCCEEECCCCcC
Confidence 99998877777788889999999999988866666778889999999999988755444443 457899999999988
Q ss_pred cccCCcccccCCCccEEEecCCccccc
Q 046683 281 QGTIPKSLKYCTSLFRVRVDGNNLTGN 307 (329)
Q Consensus 281 ~~~~~~~~~~~~~L~~L~l~~~~l~~~ 307 (329)
.+..+..+..+++|+.|++++|++...
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 866666788888999999999988765
No 89
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=8.1e-24 Score=195.95 Aligned_cols=303 Identities=11% Similarity=0.039 Sum_probs=185.6
Q ss_pred CeeEEeecCCC-CcCccCCcccccCCceeEEeecCCccCCC----CchhcCCCCCCcEEecCCcccc----cccCccccc
Q 046683 26 RVINISLTNTG-LSGTLHDFSFSLFPHLAYLDLSFNELFGI----IPPQIGNLSKLQLLSLHANAFS----GKIPCEIFL 96 (329)
Q Consensus 26 ~l~~l~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~----~~~~~~~~~ 96 (329)
++++|++++|. ++..-.......+++|++|++++|.+.+. .......+++|++|+++++.++ ..++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 49999999886 22111111346899999999999987655 2234567899999999999876 234445668
Q ss_pred CCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccc---cCCCcccCCCCCCcEEEccCceecccCCccccCCCCccE
Q 046683 97 LTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLS---GSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNR 173 (329)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 173 (329)
+++|++|++++|.+.+....+..+++|++|.++..... ......+..+++|+.+.+.++.. ...+..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcE
Confidence 99999999999987765555778899999999753222 12233455556666666655422 234445555666666
Q ss_pred EecCCcccCCCCC-cCcCCCC------------------------CccEEEccC-----------CcCCCCC-CccccCC
Q 046683 174 LFLYDNLLYGSIP-PNVGNLK------------------------SLLVLQLDE-----------NQLSGCI-PRSFGNL 216 (329)
Q Consensus 174 L~l~~~~~~~~~~-~~~~~~~------------------------~L~~L~l~~-----------~~~~~~~-~~~l~~~ 216 (329)
|++++|.+.+... ..+..++ +|++|++++ +.++... ......+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 6666665432111 1123344 455555542 1222110 1112235
Q ss_pred CCCcEEEccCccccCCCCccccC-CCcccEEEcc----CCccCCCCCC-cccc-cccCCCceEEeccCCc--ccccCCcc
Q 046683 217 TNLIQLFLSFNNLSGSIPREIGN-LRSLVQLALD----QNQFTGFLPP-SLGN-ICRGGALQYFGVSENH--FQGTIPKS 287 (329)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~l~~~~~~-~l~~-~~~~~~L~~L~l~~~~--~~~~~~~~ 287 (329)
++|++|.+..+.+++.....+.. +++|++|+++ .+.+++.... .+.. +..+++|++|++++|. +.+.....
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 66666666555555433333333 6777777775 3344421100 0111 2346788888887653 44333333
Q ss_pred c-ccCCCccEEEecCCccccc-hhhhhhhcCCCcEEEcCCcccC
Q 046683 288 L-KYCTSLFRVRVDGNNLTGN-ISQALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 288 ~-~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~ 329 (329)
+ ..+++|++|++++|++++. .+..+..+++|++|++++|+|+
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 3 3588999999999999874 4555678999999999999864
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=6e-21 Score=156.23 Aligned_cols=197 Identities=17% Similarity=0.098 Sum_probs=128.9
Q ss_pred CccEEEccCCccccCCCcccCCCCCCcEEEccCce-ecccCCccccCCCCccEEecCC-cccCCCCCcCcCCCCCccEEE
Q 046683 122 NLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQ-LSGSIPPSMGNLSNLNRLFLYD-NLLYGSIPPNVGNLKSLLVLQ 199 (329)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 199 (329)
++++|+++++.+....+..+..+++|++|++++|+ ++...+..+..+++|++|++++ +.+....+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666655555556666666666666664 5545555666666666666666 666544445556666777777
Q ss_pred ccCCcCCCCCCccccCCCCCc---EEEccCc-cccCCCCccccCCCccc-EEEccCCccCCCCCCcccccccCCCceEEe
Q 046683 200 LDENQLSGCIPRSFGNLTNLI---QLFLSFN-NLSGSIPREIGNLRSLV-QLALDQNQFTGFLPPSLGNICRGGALQYFG 274 (329)
Q Consensus 200 l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~ 274 (329)
+++|.+.+ .+. +..+++|+ .|++++| .+++..+..|..+++|+ +|++++|++.......+. . .+|++|+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~---~-~~L~~L~ 185 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN---G-TKLDAVY 185 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT---T-CEEEEEE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC---C-CCCCEEE
Confidence 77776664 333 55666666 7777777 67655555677777888 888888877633222221 2 5788888
Q ss_pred ccCCc-ccccCCcccccC-CCccEEEecCCccccchhhhhhhcCCCcEEEcCCcc
Q 046683 275 VSENH-FQGTIPKSLKYC-TSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 275 l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 327 (329)
+++|+ +.+..+..+..+ ++|+.|++++|++++. |.. .+++|+.|+++++.
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 88884 775556677777 8888888888888743 332 67788888888763
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4e-24 Score=187.65 Aligned_cols=238 Identities=18% Similarity=0.168 Sum_probs=168.3
Q ss_pred ccccCCceeEEeecCCccCCCCc----hhcCCCCCCcEEecCCcccc---cccCccc-------ccCCCccEEEeecCcC
Q 046683 45 SFSLFPHLAYLDLSFNELFGIIP----PQIGNLSKLQLLSLHANAFS---GKIPCEI-------FLLTHLKFLILHSNKL 110 (329)
Q Consensus 45 ~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~i~---~~~~~~~-------~~~~~L~~L~l~~~~~ 110 (329)
.++.+++|++|++++|.+....+ ..+..+++|++|++++|.+. +..|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 67788889999999988775433 33667889999999886433 3334333 6788999999999887
Q ss_pred CCC-----CCCCCCCCCccEEEccCCccccCCCcc----cCCC---------CCCcEEEccCceecc-cCC---ccccCC
Q 046683 111 NGS-----IPPLGNLNNLVKLFLLNNSLSGSIPPD----IGNL---------KSLSELDLSINQLSG-SIP---PSMGNL 168 (329)
Q Consensus 111 ~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~~-~~~---~~l~~~ 168 (329)
... +..+..+++|++|++++|.+....+.. +..+ ++|++|++++|+++. ..+ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 752 223577889999999998876333322 3333 889999999888763 233 356678
Q ss_pred CCccEEecCCcccCC-----CCCcCcCCCCCccEEEccCCcCC----CCCCccccCCCCCcEEEccCccccCC----CCc
Q 046683 169 SNLNRLFLYDNLLYG-----SIPPNVGNLKSLLVLQLDENQLS----GCIPRSFGNLTNLIQLFLSFNNLSGS----IPR 235 (329)
Q Consensus 169 ~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~ 235 (329)
++|++|++++|.+.+ ..+..+..+++|++|++++|.++ ...+..+..+++|++|++++|.+++. .+.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 889999999987762 12225677888999999998874 34455677788899999999988743 234
Q ss_pred cc--cCCCcccEEEccCCccCCC----CCCcccccccCCCceEEeccCCcccccC
Q 046683 236 EI--GNLRSLVQLALDQNQFTGF----LPPSLGNICRGGALQYFGVSENHFQGTI 284 (329)
Q Consensus 236 ~~--~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~~~~L~~L~l~~~~~~~~~ 284 (329)
.+ ..+++|++|++++|.+... .+..+. .++++|++|++++|.+.+..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~--~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVID--EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH--HHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH--hcCCCceEEEccCCcCCcch
Confidence 44 3378899999999988752 222221 24588999999999887555
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=162.46 Aligned_cols=224 Identities=18% Similarity=0.113 Sum_probs=173.2
Q ss_pred CceeEEeecCCccCCCCch---hcCCCCCCcEEecCCcccccccCccc--ccCCCccEEEeecCcCCCCCCC-----CCC
Q 046683 50 PHLAYLDLSFNELFGIIPP---QIGNLSKLQLLSLHANAFSGKIPCEI--FLLTHLKFLILHSNKLNGSIPP-----LGN 119 (329)
Q Consensus 50 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~-----~~~ 119 (329)
..++.+.+..+.+...... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+. +..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3578888888776532111 12245679999999999987888777 8899999999999998864442 346
Q ss_pred CCCccEEEccCCccccCCCcccCCCCCCcEEEccCceeccc--C--CccccCCCCccEEecCCcccCCCCCc----CcCC
Q 046683 120 LNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGS--I--PPSMGNLSNLNRLFLYDNLLYGSIPP----NVGN 191 (329)
Q Consensus 120 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~ 191 (329)
+++|++|++++|.+....+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.+.. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 89999999999999877888899999999999999986531 1 2334678999999999998863 222 2356
Q ss_pred CCCccEEEccCCcCCCCCCccccCC---CCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCC
Q 046683 192 LKSLLVLQLDENQLSGCIPRSFGNL---TNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGG 268 (329)
Q Consensus 192 ~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~ 268 (329)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ ..+..+. ++|+.|++++|++.+. +. ...++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~----~~~l~ 294 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ----PDELP 294 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC----TTSCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch----hhhCC
Confidence 7899999999999987766555555 79999999999998 5555553 7999999999999853 22 23558
Q ss_pred CceEEeccCCcccc
Q 046683 269 ALQYFGVSENHFQG 282 (329)
Q Consensus 269 ~L~~L~l~~~~~~~ 282 (329)
+|+.|++++|.+.+
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 99999999998864
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=7.8e-23 Score=189.43 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=40.2
Q ss_pred CCCceEEeccCCcccccCCccc-ccCCCccEEEecCCccccchhh-hhhhcCCCcEEEcCCccc
Q 046683 267 GGALQYFGVSENHFQGTIPKSL-KYCTSLFRVRVDGNNLTGNISQ-ALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~ 328 (329)
+++|+.|++++|.+++.....+ ..+++|+.|++++|++++..+. ....+++|++|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4667777777776654433333 5577777888887777654443 334577788888877765
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.4e-22 Score=187.76 Aligned_cols=302 Identities=14% Similarity=0.071 Sum_probs=188.4
Q ss_pred CCCeeEEeecCCCCcCccCCccc-ccCCceeEEeecCC-ccCCC-CchhcCCCCCCcEEecCCcccccccCccc----cc
Q 046683 24 AGRVINISLTNTGLSGTLHDFSF-SLFPHLAYLDLSFN-ELFGI-IPPQIGNLSKLQLLSLHANAFSGKIPCEI----FL 96 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~----~~ 96 (329)
.+++++|+++++.+++..+. .+ +.+++|++|++++| .+... .......+++|++|++++|.+++..+..+ ..
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 46799999999887755444 33 36889999999888 44432 22333478888999998887664433333 25
Q ss_pred CCCccEEEeecCcCCCCCC-C----CCCCCCccEEEccCCc---------------------------------------
Q 046683 97 LTHLKFLILHSNKLNGSIP-P----LGNLNNLVKLFLLNNS--------------------------------------- 132 (329)
Q Consensus 97 ~~~L~~L~l~~~~~~~~~~-~----~~~~~~L~~L~l~~~~--------------------------------------- 132 (329)
+++|++|+++++. ..... . ...+++|++|++.+|.
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 6788888888775 11111 1 2335666666666541
Q ss_pred -----------cccC----CCcccCCCCCCcEEEccCceecccC-CccccCCCCccEEecCCcccCCC-CCcCcCCCCCc
Q 046683 133 -----------LSGS----IPPDIGNLKSLSELDLSINQLSGSI-PPSMGNLSNLNRLFLYDNLLYGS-IPPNVGNLKSL 195 (329)
Q Consensus 133 -----------~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 195 (329)
+... .+..+..+++|++|++++|.++... ...+..+++|++|.+.+| +.+. .......+++|
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 0000 1111124688999999998865432 223457899999999888 3221 11112347889
Q ss_pred cEEEccCC---------cCCCCCCccc-cCCCCCcEEEccCccccCCCCcccc-CCCcccEEEcc--C----CccCCCCC
Q 046683 196 LVLQLDEN---------QLSGCIPRSF-GNLTNLIQLFLSFNNLSGSIPREIG-NLRSLVQLALD--Q----NQFTGFLP 258 (329)
Q Consensus 196 ~~L~l~~~---------~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~l~~~~~ 258 (329)
++|++.++ .++......+ ..+++|++|.+..+.+++.....+. .+++|++|+++ + +.++....
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 99988442 2322111122 2468899998877777644444443 57899999998 3 33432110
Q ss_pred -Ccccc-cccCCCceEEeccCCcccccCCcccc-cCCCccEEEecCCccccchhhhh-hhcCCCcEEEcCCcccC
Q 046683 259 -PSLGN-ICRGGALQYFGVSENHFQGTIPKSLK-YCTSLFRVRVDGNNLTGNISQAL-GIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 259 -~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~n~~~ 329 (329)
..+.. +..+++|+.|++++ .+.+.....+. .+++|+.|++++|.+++..+..+ ..+++|++|+|++|+++
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 11111 34567899999977 55544444444 37889999999999887666666 67899999999999864
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.9e-19 Score=141.18 Aligned_cols=160 Identities=26% Similarity=0.211 Sum_probs=80.8
Q ss_pred CccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEcc
Q 046683 122 NLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLD 201 (329)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (329)
++++|+++++.+....+..+..+++|++|++++|++....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333344445555555555555443333344455555555555555544333334455555555555
Q ss_pred CCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCccc
Q 046683 202 ENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQ 281 (329)
Q Consensus 202 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~ 281 (329)
+|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.. .++++++|++..|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----------CTTTTHHHHHHHHHCT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----------CCCCHHHHHHHHHhCC
Confidence 555554444445555555555555555554444445555566666666555431 2245555555555555
Q ss_pred ccCCcccccC
Q 046683 282 GTIPKSLKYC 291 (329)
Q Consensus 282 ~~~~~~~~~~ 291 (329)
+.+|..+..+
T Consensus 179 g~ip~~~~~l 188 (208)
T 2o6s_A 179 GVVRNSAGSV 188 (208)
T ss_dssp TTBBCTTSSB
T ss_pred ceeeccCccc
Confidence 5555544433
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=6.9e-18 Score=145.88 Aligned_cols=238 Identities=17% Similarity=0.076 Sum_probs=171.4
Q ss_pred EEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccC-cccccCCCccE-EEee
Q 046683 29 NISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIP-CEIFLLTHLKF-LILH 106 (329)
Q Consensus 29 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~-L~l~ 106 (329)
.++.++++++ .+|. .+ .+++++|++++|+++.+...+|.++++|++|++++|++.+..+ .+|.++++++. +.++
T Consensus 13 ~v~C~~~~Lt-~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4556666676 6665 23 3589999999999998877889999999999999999865554 46778888775 5556
Q ss_pred cCcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccC-ceecccCCccccCCC-CccEEecCCcccCC
Q 046683 107 SNKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSI-NQLSGSIPPSMGNLS-NLNRLFLYDNLLYG 183 (329)
Q Consensus 107 ~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 183 (329)
++.+....+ .+..+++|++|++++|.+....+..+....++..+++.+ +++....+..+..+. .++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 677776544 478899999999999988866666666667788888865 456655555666554 58889999998875
Q ss_pred CCCcCcCCCCCccEEEccC-CcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCccc
Q 046683 184 SIPPNVGNLKSLLVLQLDE-NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLG 262 (329)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 262 (329)
..+..+ ...+++++++.+ |.+.......|..+++|+.|++++|.++......+ .+|++|.+.++.-....+
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP---- 240 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP---- 240 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC----
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC----
Confidence 444333 456888898875 56665555678888999999999998885444444 466666666554332333
Q ss_pred ccccCCCceEEeccCC
Q 046683 263 NICRGGALQYFGVSEN 278 (329)
Q Consensus 263 ~~~~~~~L~~L~l~~~ 278 (329)
.+..+++|+.+++.++
T Consensus 241 ~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTTCCSCCEEECSCH
T ss_pred CchhCcChhhCcCCCC
Confidence 3445678888888764
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=8.1e-18 Score=145.44 Aligned_cols=232 Identities=19% Similarity=0.158 Sum_probs=177.9
Q ss_pred ceecceeecCC----------CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCC-CCchhcCCCCCCcE-Eec
Q 046683 14 CAWSGISCNDA----------GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFG-IIPPQIGNLSKLQL-LSL 81 (329)
Q Consensus 14 ~~~~~~~~~~~----------~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~-L~l 81 (329)
|.+....|+.. +++++|++++|.++ .+++.+|+++++|++|++++|.+.+ ....+|.++++++. +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777641 36899999999997 7887789999999999999999765 44567889998776 566
Q ss_pred CCcccccccCcccccCCCccEEEeecCcCCCCCCC-CCCCCCccEEEccC-CccccCCCcccCCCC-CCcEEEccCceec
Q 046683 82 HANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPP-LGNLNNLVKLFLLN-NSLSGSIPPDIGNLK-SLSELDLSINQLS 158 (329)
Q Consensus 82 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 158 (329)
..+++....+..|..+++|++|++++|.+....+. +....++..+++.+ +.+.......+..+. .++.|++++|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888866678899999999999999998866553 45667788888866 456655566676664 6899999999998
Q ss_pred ccCCccccCCCCccEEecCC-cccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccc
Q 046683 159 GSIPPSMGNLSNLNRLFLYD-NLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREI 237 (329)
Q Consensus 159 ~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 237 (329)
.+.+. .....+|+++.+.+ +.+.......+..+++|++|++++|.++...+..+ .+|++|...++.--...| .+
T Consensus 168 ~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CT
T ss_pred CCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-Cc
Confidence 55444 44567899999975 56665555678899999999999999986555444 567777766654433555 47
Q ss_pred cCCCcccEEEccCC
Q 046683 238 GNLRSLVQLALDQN 251 (329)
Q Consensus 238 ~~~~~L~~L~l~~~ 251 (329)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 78899999999764
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.6e-18 Score=145.92 Aligned_cols=172 Identities=24% Similarity=0.296 Sum_probs=98.7
Q ss_pred cccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccE
Q 046683 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVK 125 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 125 (329)
+..+++|++|+++++.+... ..+..+++|++|++++|++++. +. +..+++|++|++++|.+.. .+.+..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LSSLKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-ChhhccCCCCCE
Confidence 45566777777777766644 2356677777777777776633 22 6667777777777776654 233566666666
Q ss_pred EEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcC
Q 046683 126 LFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQL 205 (329)
Q Consensus 126 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (329)
|++++|.+... ..+..+++|+.|++++|++... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666665532 3355556666666666655533 345555556666665555543322 45555555555555555
Q ss_pred CCCCCccccCCCCCcEEEccCcccc
Q 046683 206 SGCIPRSFGNLTNLIQLFLSFNNLS 230 (329)
Q Consensus 206 ~~~~~~~l~~~~~L~~L~l~~~~~~ 230 (329)
.+. + .+..+++|+.|++++|.++
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCC-h-hhccCCCCCEEECcCCccc
Confidence 432 1 2445555555555555554
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=3.1e-18 Score=136.96 Aligned_cols=182 Identities=25% Similarity=0.249 Sum_probs=149.5
Q ss_pred ccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccC
Q 046683 123 LVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202 (329)
Q Consensus 123 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (329)
.+.++..++++. ..+..+ .+++++|+++++++....+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 345666666555 233322 45899999999999877777788999999999999999876666678899999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccc
Q 046683 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQG 282 (329)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 282 (329)
|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+ ..+++|++|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF---DRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT---TTCTTCCEEECCSCCBC-
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh---ccCCCccEEEecCCCee-
Confidence 99997777778899999999999999997777778899999999999999986544434 35689999999999765
Q ss_pred cCCcccccCCCccEEEecCCccccchhhhhhhcCC
Q 046683 283 TIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHN 317 (329)
Q Consensus 283 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 317 (329)
..+++|++|++..|++++.+|..++.++.
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 45678999999999999999988877664
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.1e-18 Score=145.10 Aligned_cols=191 Identities=27% Similarity=0.364 Sum_probs=147.7
Q ss_pred eeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCC
Q 046683 52 LAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNN 131 (329)
Q Consensus 52 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 131 (329)
+..+.+....+.... .+..+++|+.|+++++.+. ..+ .+..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 444455555555332 2356788999999998887 333 47788999999999998886655 888899999999998
Q ss_pred ccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCc
Q 046683 132 SLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPR 211 (329)
Q Consensus 132 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 211 (329)
.+... ..+..+++|++|++++|++... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 101 KVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-
Confidence 87642 3478889999999999988753 4677888999999999988754 467788899999999998886544
Q ss_pred cccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCC
Q 046683 212 SFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFL 257 (329)
Q Consensus 212 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 257 (329)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|++....
T Consensus 174 -l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECCC
T ss_pred -hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCCc
Confidence 77888999999999988743 34788899999999999887543
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4.5e-18 Score=156.46 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=135.8
Q ss_pred eeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEee
Q 046683 27 VINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILH 106 (329)
Q Consensus 27 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 106 (329)
+..+.+....+.+. . .+..+++|+.|+++++.+.... .+..+++|+.|+|++|++.+..+ +..+++|+.|+++
T Consensus 23 l~~l~l~~~~i~~~-~--~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDA-V--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSE-E--CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccc-c--chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 33445555555422 1 3567788888888888877542 46778888888888888774333 7788888888888
Q ss_pred cCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCC
Q 046683 107 SNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIP 186 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 186 (329)
+|.+.. .+.+..+++|+.|++++|.+... ..+..+++|+.|++++|++... ..+..+++|+.|++++|.+.+..+
T Consensus 96 ~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 96 ENKIKD-LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SSCCCC-CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC-ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 887774 34677788888888888877642 3467778888888888877654 567777888888888887765443
Q ss_pred cCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCC
Q 046683 187 PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSI 233 (329)
Q Consensus 187 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 233 (329)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 67777888888888877643 34677778888888887776443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=7.6e-17 Score=146.82 Aligned_cols=154 Identities=26% Similarity=0.303 Sum_probs=86.6
Q ss_pred CCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEE
Q 046683 144 LKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLF 223 (329)
Q Consensus 144 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 223 (329)
+++|++|++++|+++. +|. +.. +|++|++++|.+.+ ++. .+++|++|++++|.+++ .+. .+++|+.|+
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 3455555555555443 333 322 55555555555543 222 34566666666666553 222 345666666
Q ss_pred ccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccc-c-ccCCCceEEeccCCcccccCCcccccCCCccEEEecC
Q 046683 224 LSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGN-I-CRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDG 301 (329)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 301 (329)
+++|.+++ .+. +. ++|+.|++++|.++ ..+. +.. + .....|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCS
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeC
Confidence 66666664 333 33 66677777776665 3333 221 0 01122278888888777 5666666678888888888
Q ss_pred CccccchhhhhhhcC
Q 046683 302 NNLTGNISQALGIYH 316 (329)
Q Consensus 302 ~~l~~~~~~~~~~~~ 316 (329)
|++++..|..+..+.
T Consensus 240 N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 240 NPLSSRIRESLSQQT 254 (571)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CcCCCcCHHHHHHhh
Confidence 888877777776654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=9.7e-18 Score=154.24 Aligned_cols=195 Identities=27% Similarity=0.364 Sum_probs=161.0
Q ss_pred CCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEc
Q 046683 49 FPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFL 128 (329)
Q Consensus 49 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 128 (329)
+..+..+.+....+.... .+..+++|+.|+++++.+. .++ .+..+++|+.|++++|.+....+ +..+++|+.|++
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEEC
Confidence 334555666666666433 2457889999999999887 444 68899999999999999886655 889999999999
Q ss_pred cCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCC
Q 046683 129 LNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGC 208 (329)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 208 (329)
++|.+... ..+..+++|+.|++++|++... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 99998743 3688999999999999998853 4688899999999999999864 5678899999999999999866
Q ss_pred CCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCC
Q 046683 209 IPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLP 258 (329)
Q Consensus 209 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 258 (329)
.+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|++.....
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 55 78899999999999999853 468899999999999999875533
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.9e-17 Score=133.51 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=102.7
Q ss_pred cEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCc
Q 046683 148 SELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN 227 (329)
Q Consensus 148 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 227 (329)
+.++..++.++. +|..+. ++++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666666653 343332 56777777777776555556677777777777777777666667777777777777777
Q ss_pred cccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc
Q 046683 228 NLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG 306 (329)
Q Consensus 228 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 306 (329)
.++...+..|..+++|++|++++|++.+..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|++.-
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC---CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77755555666777777777777777655444443 44677777777777765555566667777777777776653
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.9e-17 Score=150.73 Aligned_cols=144 Identities=27% Similarity=0.272 Sum_probs=75.0
Q ss_pred eecce-eecCCCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcc
Q 046683 15 AWSGI-SCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCE 93 (329)
Q Consensus 15 ~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 93 (329)
.|.+. .|.. ++++.|+++++.+++ +|.. + +++|++|++++|.++... ..+++|++|++++|.+++ +|.
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~-l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-LPDN-L--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE- 117 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-CCSC-C--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-cCHh-H--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-
Confidence 45555 3432 356666666666653 4442 2 256666666666665322 345666666666666653 444
Q ss_pred cccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccE
Q 046683 94 IFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNR 173 (329)
Q Consensus 94 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 173 (329)
+.. +|++|++++|.+...+. .+++|+.|++++|.+.. .+. .+++|++|++++|+++. +|. +. ++|+.
T Consensus 118 l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~ 184 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA 184 (571)
T ss_dssp CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence 332 66666666666554332 45556666665555543 222 34455555555555543 333 32 45555
Q ss_pred EecCCcccC
Q 046683 174 LFLYDNLLY 182 (329)
Q Consensus 174 L~l~~~~~~ 182 (329)
|++++|.+.
T Consensus 185 L~Ls~N~L~ 193 (571)
T 3cvr_A 185 LDVSTNLLE 193 (571)
T ss_dssp EECCSSCCS
T ss_pred EECcCCCCC
Confidence 555555544
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=6.4e-17 Score=130.36 Aligned_cols=134 Identities=29% Similarity=0.340 Sum_probs=86.2
Q ss_pred CCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEc
Q 046683 121 NNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQL 200 (329)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 200 (329)
++++.|+++++.+....+..+..+++|++|++++|++....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45556666666555555555666666666666666666555666666666666666666666544444566666777777
Q ss_pred cCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccC
Q 046683 201 DENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777666655666666677777777777776555556666677777777777664
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.2e-17 Score=132.30 Aligned_cols=162 Identities=23% Similarity=0.292 Sum_probs=118.2
Q ss_pred cccccCCCCceecceeecCCCCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCc
Q 046683 5 TNVSSKIRPCAWSGISCNDAGRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN 84 (329)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 84 (329)
.....+...|.|.+..|+. +.+. .+|. .+ .++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~-----------~~l~-~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRS-----------KRHA-SVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp -CCCCTTCEEETTEEECTT-----------SCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEeCCEeEccC-----------CCcC-ccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 3445566777877777654 3333 4443 11 267888888888888777777788888888888888
Q ss_pred ccccccCcccccCCCccEEEeecCcCCCCCCC-CCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCc
Q 046683 85 AFSGKIPCEIFLLTHLKFLILHSNKLNGSIPP-LGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPP 163 (329)
Q Consensus 85 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 163 (329)
++....+..|..+++|++|++++|.+....+. +..+++|+.|++++|.+. ..+..+..+++|++|++++|++....+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 88744445667788888888888887766554 577888888888888877 5566677888888888888888766666
Q ss_pred cccCCCCccEEecCCcccC
Q 046683 164 SMGNLSNLNRLFLYDNLLY 182 (329)
Q Consensus 164 ~l~~~~~L~~L~l~~~~~~ 182 (329)
.+..+++|+.|++.+|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 7777888888888888765
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=3.5e-17 Score=131.91 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=108.0
Q ss_pred cEEEccCceecccCCccccCCCCccEEecCCcccCCCCC-cCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccC
Q 046683 148 SELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIP-PNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSF 226 (329)
Q Consensus 148 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 226 (329)
+.++++++.++. +|..+ .+.+++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777777663 44433 3456778888887765432 3466777888888888877766666677777888888888
Q ss_pred ccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc
Q 046683 227 NNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG 306 (329)
Q Consensus 227 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 306 (329)
|.+++..+..|..+++|++|++++|++.+..+..+. .+++|++|++++|++.+..+..+..+++|+.|++++|++..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST---TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC---CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 877766666677777888888888877755555443 44677777777777776667777777777777777777764
Q ss_pred c
Q 046683 307 N 307 (329)
Q Consensus 307 ~ 307 (329)
.
T Consensus 168 ~ 168 (220)
T 2v70_A 168 N 168 (220)
T ss_dssp S
T ss_pred C
Confidence 3
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.8e-17 Score=142.67 Aligned_cols=179 Identities=23% Similarity=0.180 Sum_probs=121.5
Q ss_pred cEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCcccc-CCCCccEEecCCcccCCCCCcCcCCCCCccEEEccC
Q 046683 124 VKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMG-NLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202 (329)
Q Consensus 124 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (329)
+.++.+++.+.. +|..+. +.++.|++++|+++...+..+. .+++|++|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 567777776663 343332 3577888888887766666666 778888888888877766656677778888888888
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccc
Q 046683 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQG 282 (329)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 282 (329)
|.+....+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.......+..+..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 87776666667777888888888888776666677777888888888887775443333322345677777777777764
Q ss_pred cCCcccccCCC--ccEEEecCCccc
Q 046683 283 TIPKSLKYCTS--LFRVRVDGNNLT 305 (329)
Q Consensus 283 ~~~~~~~~~~~--L~~L~l~~~~l~ 305 (329)
..+..+..++. ++.|++.+|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44445555555 366777777665
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=1.2e-16 Score=129.50 Aligned_cols=154 Identities=25% Similarity=0.239 Sum_probs=123.3
Q ss_pred CcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccC
Q 046683 147 LSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSF 226 (329)
Q Consensus 147 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 226 (329)
.+.++.+++++. ..|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 566778777766 344433 37899999999998877777788889999999999998866667778889999999999
Q ss_pred ccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc
Q 046683 227 NNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG 306 (329)
Q Consensus 227 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 306 (329)
|.+++..+..|..+++|+.|++++|++. ..+..+ ..+++|++|++++|++.+..+..+..+++|+.|++.+|++..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI---ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG---GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCccc---ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9988766677888899999999999887 445444 355889999999998886666678888899999999998875
Q ss_pred c
Q 046683 307 N 307 (329)
Q Consensus 307 ~ 307 (329)
.
T Consensus 174 ~ 174 (229)
T 3e6j_A 174 E 174 (229)
T ss_dssp T
T ss_pred C
Confidence 4
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.9e-17 Score=130.13 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=48.5
Q ss_pred CCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEE
Q 046683 72 NLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELD 151 (329)
Q Consensus 72 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 151 (329)
.+++|+.|+++++.+. .++ .+..+++|++|++++|.+. ..+.+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3444555555555444 223 3444555555555555333 222344444455555544444433344444444555555
Q ss_pred ccCceecccCCccccCCCCccEEecCCcc
Q 046683 152 LSINQLSGSIPPSMGNLSNLNRLFLYDNL 180 (329)
Q Consensus 152 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 180 (329)
+++|++.+..+..+..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 55544443333444444444444444443
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.8e-16 Score=127.66 Aligned_cols=131 Identities=25% Similarity=0.250 Sum_probs=64.4
Q ss_pred cEEEccCCccccCCC-cccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccC
Q 046683 124 VKLFLLNNSLSGSIP-PDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDE 202 (329)
Q Consensus 124 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (329)
+.|++++|.+....+ ..+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 344444444433211 2344444455555555444444444444555555555555555444333444555555555555
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccC
Q 046683 203 NQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 203 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555444444555555555555555555444455555555555555555554
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=7.2e-17 Score=140.04 Aligned_cols=175 Identities=25% Similarity=0.188 Sum_probs=126.3
Q ss_pred eEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccc-cCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccC
Q 046683 53 AYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIF-LLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLN 130 (329)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~ 130 (329)
+.++++++.++..+. .+ .+.++.|++++|++++..+..+. ++++|++|++++|.+....+ .+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888775432 22 24588899998888865555666 78888888888888876554 477888888888888
Q ss_pred CccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCc---CCCCCccEEEccCCcCCC
Q 046683 131 NSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNV---GNLKSLLVLQLDENQLSG 207 (329)
Q Consensus 131 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 207 (329)
|.+....+..+..+++|++|++++|++....+..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88876666777888888888888888877667777788888888888887775443333 456777788888777775
Q ss_pred CCCccccCCCC--CcEEEccCcccc
Q 046683 208 CIPRSFGNLTN--LIQLFLSFNNLS 230 (329)
Q Consensus 208 ~~~~~l~~~~~--L~~L~l~~~~~~ 230 (329)
.....+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55455555555 366777777665
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=7.9e-17 Score=127.58 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=96.9
Q ss_pred ccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEE
Q 046683 95 FLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRL 174 (329)
Q Consensus 95 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 174 (329)
..+++|+.|+++++.+.... .+..+++|++|++++|.+.. ...+..+++|++|++++|++.+..+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 46778888888888777443 67777888888888775542 2356667777777777777765556666667777777
Q ss_pred ecCCcccCCCCCcCcCCCCCccEEEccCCc-CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCcc
Q 046683 175 FLYDNLLYGSIPPNVGNLKSLLVLQLDENQ-LSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQF 253 (329)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 253 (329)
++++|.+.+..+..+..+++|++|++++|. +.. .+ .+..+++|+.|++++|.+++. + .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 777776665444455666666666666665 442 22 455556666666666666532 2 455556666666666655
Q ss_pred C
Q 046683 254 T 254 (329)
Q Consensus 254 ~ 254 (329)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.3e-17 Score=136.71 Aligned_cols=171 Identities=23% Similarity=0.244 Sum_probs=122.5
Q ss_pred cCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEE
Q 046683 48 LFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLF 127 (329)
Q Consensus 48 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 127 (329)
.+.++..++++.+.++... .+..+++|+.|+++++.+. ..+ .+..+++|++|++++|.+....+ +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4556777788888777543 4667888999999888887 444 67788888899888888876655 77888888888
Q ss_pred ccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCC
Q 046683 128 LLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSG 207 (329)
Q Consensus 128 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 207 (329)
+++|.+..... +.. ++|++|++++|++.+. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 88887764322 222 7788888888877643 3466777777777777777643 246667777777777777765
Q ss_pred CCCccccCCCCCcEEEccCccccCC
Q 046683 208 CIPRSFGNLTNLIQLFLSFNNLSGS 232 (329)
Q Consensus 208 ~~~~~l~~~~~L~~L~l~~~~~~~~ 232 (329)
. ..+..+++|+.|++++|.++..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 4566677777777777776633
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.5e-17 Score=142.55 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=86.6
Q ss_pred CCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCce-EEeccCCcccccCCcccccCCCc
Q 046683 216 LTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQ-YFGVSENHFQGTIPKSLKYCTSL 294 (329)
Q Consensus 216 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L 294 (329)
+++|+.+++.+|.++......|..+++|+++++.++ +.......| ..+.+|+ .+.+.+ .+....+..|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF---~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF---SNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT---TTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh---hCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 689999999999888777778999999999999887 554444444 4668898 999988 6665677889999999
Q ss_pred cEEEecCCccccchhhhhhhcCCCcEEEc
Q 046683 295 FRVRVDGNNLTGNISQALGIYHNLTFIDL 323 (329)
Q Consensus 295 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 323 (329)
+.+++.++.+......+|.++++|+.|+.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999888889999999999874
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=4.9e-17 Score=134.68 Aligned_cols=168 Identities=22% Similarity=0.233 Sum_probs=131.1
Q ss_pred CeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEe
Q 046683 26 RVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL 105 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 105 (329)
.+..++++++.++ .++ .+..+++|++|+++++.+.... .+..+++|++|++++|++.+. +. +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 3556677777776 333 4778889999999998887543 577889999999999988844 33 788899999999
Q ss_pred ecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCC
Q 046683 106 HSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSI 185 (329)
Q Consensus 106 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 185 (329)
++|.+..... +.. ++|+.|++++|.+... ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+.
T Consensus 93 ~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-
Confidence 9998876443 333 8899999999988753 3578888999999999988754 3677888999999999988765
Q ss_pred CcCcCCCCCccEEEccCCcCCCC
Q 046683 186 PPNVGNLKSLLVLQLDENQLSGC 208 (329)
Q Consensus 186 ~~~~~~~~~L~~L~l~~~~~~~~ 208 (329)
..+..+++|+.|++++|.+...
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 5677888999999999887644
No 118
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=4.2e-15 Score=130.19 Aligned_cols=250 Identities=12% Similarity=0.034 Sum_probs=109.1
Q ss_pred cCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCC
Q 046683 41 LHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNL 120 (329)
Q Consensus 41 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 120 (329)
++..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|.+|++|+.++++++.+.......-.+
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 333344443 4555555433 333333444442 455555543 333233344555555555555554444333322223
Q ss_pred CCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEc
Q 046683 121 NNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQL 200 (329)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 200 (329)
.+|+.+.+..+ +..+...+|.++++|+.+.+..+ +..+...+|.. .+|+.+.+.+ .+.......|..|++|+.+.+
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEe
Confidence 45555555432 33344455555555555555442 22233334443 4455555522 222233344455555555555
Q ss_pred cCCcCC-----CCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEec
Q 046683 201 DENQLS-----GCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGV 275 (329)
Q Consensus 201 ~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l 275 (329)
.++.+. .....+|..+++|+.+.+.+ .++......|.+|.+|+.+.+..+ +.......| ..+ +|+.+.+
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF---~~~-~L~~l~l 352 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF---NNT-GIKEVKV 352 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS---SSS-CCCEEEE
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC---CCC-CCCEEEE
Confidence 444332 12333444555555555542 233333445555555555555332 221222222 233 4555555
Q ss_pred cCCcccccCCcccccCC-CccEEEecCCcc
Q 046683 276 SENHFQGTIPKSLKYCT-SLFRVRVDGNNL 304 (329)
Q Consensus 276 ~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l 304 (329)
.++.........|..++ .+..|++..+.+
T Consensus 353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 353 EGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 55444333333344332 444555544443
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=6.2e-15 Score=129.10 Aligned_cols=266 Identities=11% Similarity=0.080 Sum_probs=183.9
Q ss_pred cccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCC-CCCCCCCCcc
Q 046683 46 FSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSI-PPLGNLNNLV 124 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~ 124 (329)
+..+..++.+.+.. .++.+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.... ..+..|++|+
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 34456677777754 3444555677765 6888888764 554555567664 688888876 343333 3578888888
Q ss_pred EEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCc
Q 046683 125 KLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQ 204 (329)
Q Consensus 125 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (329)
.+.+.++.+.......|. +.+|+.+.+..+ +..+...+|..+++|+.+.+..+ +..+....|.. +.|+.+.+.. .
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 888888877766666666 578888888754 55566778888888888888764 33344455655 6788888844 3
Q ss_pred CCCCCCccccCCCCCcEEEccCcccc-----CCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCc
Q 046683 205 LSGCIPRSFGNLTNLIQLFLSFNNLS-----GSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENH 279 (329)
Q Consensus 205 ~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~ 279 (329)
+......+|..+++|+.+.+.++.+. ......|..|++|+.+.+.+ .+.......| ..|.+|+.+.+..+
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF---~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL---GGNRKVTQLTIPAN- 333 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT---TTCCSCCEEEECTT-
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh---cCCCCccEEEECcc-
Confidence 45455677888888998888776553 34556788888888888874 3443333333 46678888888655
Q ss_pred ccccCCcccccCCCccEEEecCCccccchhhhhhhcC-CCcEEEcCCcc
Q 046683 280 FQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYH-NLTFIDLSRNN 327 (329)
Q Consensus 280 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n~ 327 (329)
+.......|.+| +|+.+++.+|.........|.+++ +++.|.+-.+.
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 554556778888 899999988887766666777774 67777776543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=6.2e-16 Score=132.47 Aligned_cols=222 Identities=15% Similarity=0.054 Sum_probs=157.0
Q ss_pred CCCeeEEeecCCCCcC-------------------ccCCccccc--------CCceeEEeecCCccCCCCchhcCCCCCC
Q 046683 24 AGRVINISLTNTGLSG-------------------TLHDFSFSL--------FPHLAYLDLSFNELFGIIPPQIGNLSKL 76 (329)
Q Consensus 24 ~~~l~~l~l~~~~~~~-------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L 76 (329)
.++++.|+|+++.+.. .+++.+|.+ +++|++|++.. .++.+...+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 4578999999888760 345567777 88888888877 7776777778888888
Q ss_pred cEEecCCcccccccCcccccCCCccEEEeecCcC----CCC-CCCCCCCCCcc-EEEccCCc------------------
Q 046683 77 QLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKL----NGS-IPPLGNLNNLV-KLFLLNNS------------------ 132 (329)
Q Consensus 77 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~----~~~-~~~~~~~~~L~-~L~l~~~~------------------ 132 (329)
+.++++++.+....+.+|..+.++..+....... ... ...+..+..|+ .+.+....
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 8888888777655566777777666665544111 111 11233344444 22222110
Q ss_pred ------cccCCCccc-CCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCcc-EEEccCCc
Q 046683 133 ------LSGSIPPDI-GNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLL-VLQLDENQ 204 (329)
Q Consensus 133 ------~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~ 204 (329)
+.......+ ..+++|+.+++.+|+++.+...+|..+++|+++.+.++ +..+....|..+++|+ .+.+.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 000000001 13789999999999888888889999999999999887 6656777889999999 999988 6
Q ss_pred CCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEc
Q 046683 205 LSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLAL 248 (329)
Q Consensus 205 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 248 (329)
+......+|..+++|+.+.+..+.++......|.++++|+.+..
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 66667788999999999999999998777789999999998853
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.1e-15 Score=117.76 Aligned_cols=131 Identities=26% Similarity=0.257 Sum_probs=86.9
Q ss_pred CCeeEEeecCCCCc-CccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEE
Q 046683 25 GRVINISLTNTGLS-GTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFL 103 (329)
Q Consensus 25 ~~l~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 103 (329)
+++++|++++|.+. +.++. .+..+++|++|++++|.+... ..+..+++|++|++++|++.+..+..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 46778888877776 55655 567777888888887777654 566777777888887777775456566667777777
Q ss_pred EeecCcCCCCC--CCCCCCCCccEEEccCCccccCCC---cccCCCCCCcEEEccCceec
Q 046683 104 ILHSNKLNGSI--PPLGNLNNLVKLFLLNNSLSGSIP---PDIGNLKSLSELDLSINQLS 158 (329)
Q Consensus 104 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 158 (329)
++++|.+.... ..+..+++|++|++++|.+....+ ..+..+++|++|++.+|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777766543 345566666666666666653333 24555566666666555443
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.6e-18 Score=158.43 Aligned_cols=202 Identities=18% Similarity=0.080 Sum_probs=97.8
Q ss_pred CCCCCCcEEecCCcccccccCcccccCCCccEEEeecCc-------------CCCCCC-CCCCCCCccEEE-ccCCcccc
Q 046683 71 GNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNK-------------LNGSIP-PLGNLNNLVKLF-LLNNSLSG 135 (329)
Q Consensus 71 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~-~~~~~~~L~~L~-l~~~~~~~ 135 (329)
..+++|+.|+++++++. .+|..+.++++|+.|+++++. ..+..+ .+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 46778888888888776 678888888888888875542 111111 133444455444 2222211
Q ss_pred CCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccC
Q 046683 136 SIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGN 215 (329)
Q Consensus 136 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 215 (329)
.|+.+.+.++.+.... ...|+.|++++|.+.+ ++. +..+++|+.|++++|.+. ..|..+..
T Consensus 424 ----------~L~~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 1111112222222110 0124555555555543 232 445555555555555555 33444555
Q ss_pred CCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCC-CCcccccccCCCceEEeccCCcccccCCc---ccccC
Q 046683 216 LTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFL-PPSLGNICRGGALQYFGVSENHFQGTIPK---SLKYC 291 (329)
Q Consensus 216 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 291 (329)
+++|+.|++++|.+++ .+ .+..+++|+.|++++|++.+.. +..+. .+++|+.|++++|.+.+..+. .+..+
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV---SCPRLVLLNLQGNSLCQEEGIQERLAEML 559 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG---GCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh---cCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence 5555555555555553 23 4555555555555555555332 33332 335555555555555433221 12235
Q ss_pred CCccEEE
Q 046683 292 TSLFRVR 298 (329)
Q Consensus 292 ~~L~~L~ 298 (329)
++|+.|+
T Consensus 560 p~L~~L~ 566 (567)
T 1dce_A 560 PSVSSIL 566 (567)
T ss_dssp TTCSEEE
T ss_pred cccCccC
Confidence 5555553
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=5e-15 Score=114.05 Aligned_cols=131 Identities=24% Similarity=0.192 Sum_probs=63.0
Q ss_pred CCCcEEecCCcccc-cccCcccccCCCccEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEc
Q 046683 74 SKLQLLSLHANAFS-GKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDL 152 (329)
Q Consensus 74 ~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 152 (329)
++|+.|++++|.+. +..|..+..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45555666555554 34444455555666666665555544 44455555555555555554333444444555555555
Q ss_pred cCceecccC-CccccCCCCccEEecCCcccCCCCC---cCcCCCCCccEEEccCCcC
Q 046683 153 SINQLSGSI-PPSMGNLSNLNRLFLYDNLLYGSIP---PNVGNLKSLLVLQLDENQL 205 (329)
Q Consensus 153 ~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 205 (329)
++|.+.+.. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 555544321 1334444444444444444442222 1233444444444444433
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.2e-14 Score=114.37 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=101.4
Q ss_pred cEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCc-cccCCCCCcEEEccCccccCCCCccccCCCcccEEEccC
Q 046683 172 NRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPR-SFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQ 250 (329)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 250 (329)
+.++++++.+. .++..+. .++++|++++|.+....+. .+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888876 3444333 3888899998888765553 477888899999988888877778888888889999988
Q ss_pred CccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccch
Q 046683 251 NQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNI 308 (329)
Q Consensus 251 ~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 308 (329)
|++.+..+..+. .+++|++|++++|++.+..+..+..+++|+.|++++|++....
T Consensus 88 N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFL---GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSST---TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhc---CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 888765554443 4578888888888888777788888888888888888887643
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=5.1e-15 Score=111.64 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=88.3
Q ss_pred CCccEEEccCCcCC-CCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCce
Q 046683 193 KSLLVLQLDENQLS-GCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQ 271 (329)
Q Consensus 193 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~ 271 (329)
+++++|++++|.+. +..+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+. .+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE---KCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH---HCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh---hCCCCC
Confidence 45666666666665 34445556667777777777766643 5566677777777777777654333322 346777
Q ss_pred EEeccCCccccc-CCcccccCCCccEEEecCCccccchh---hhhhhcCCCcEEEcCC
Q 046683 272 YFGVSENHFQGT-IPKSLKYCTSLFRVRVDGNNLTGNIS---QALGIYHNLTFIDLSR 325 (329)
Q Consensus 272 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~ 325 (329)
+|++++|.+.+. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 788877777642 23667788899999999998887655 5788899999998864
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.5e-15 Score=114.53 Aligned_cols=125 Identities=28% Similarity=0.286 Sum_probs=75.1
Q ss_pred CCeeEEeecCCCCc-CccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEE
Q 046683 25 GRVINISLTNTGLS-GTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFL 103 (329)
Q Consensus 25 ~~l~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 103 (329)
+++++|+++++.+. +.++. .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45677777777766 45555 566677777777777766654 556667777777777777664455555556677777
Q ss_pred EeecCcCCCCC--CCCCCCCCccEEEccCCccccCCC---cccCCCCCCcEEEc
Q 046683 104 ILHSNKLNGSI--PPLGNLNNLVKLFLLNNSLSGSIP---PDIGNLKSLSELDL 152 (329)
Q Consensus 104 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 152 (329)
++++|.+.... ..+..+++|++|++++|.+....+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 77766665432 334555555555555555543333 23444455555444
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.1e-13 Score=121.43 Aligned_cols=272 Identities=14% Similarity=0.049 Sum_probs=132.1
Q ss_pred ccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcC---------
Q 046683 40 TLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKL--------- 110 (329)
Q Consensus 40 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~--------- 110 (329)
.+...+|.+|.+|+++.+.. .++.+...+|.+|++|+.+++..+ +......+|.++..|+.+.+...-.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~ 138 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKG 138 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeec
Confidence 34455666666666666643 344444556666666666666543 3323334555555555444432100
Q ss_pred -------------CCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecC
Q 046683 111 -------------NGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLY 177 (329)
Q Consensus 111 -------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 177 (329)
......+..+.+|+.+.+.++. .......|.++++|+.+.+..+ +..+...++..+..|+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 0011125667777777776542 3355566777777777776554 232334455555555555443
Q ss_pred CcccC---------------------CCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcc
Q 046683 178 DNLLY---------------------GSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPRE 236 (329)
Q Consensus 178 ~~~~~---------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 236 (329)
.+... ......+..+..++.+.+..+... .....+..+..++.+......+ ....
T Consensus 217 ~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~ 292 (394)
T 4fs7_A 217 NSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKT 292 (394)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTT
T ss_pred CCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccc
Confidence 32111 111223344445555554443221 2222333344444443333221 1224
Q ss_pred ccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcC
Q 046683 237 IGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYH 316 (329)
Q Consensus 237 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 316 (329)
|..+.+|+.+.+..+ +....... +..|.+|+.+++.++ +.......|.+|.+|+.+.+..+ ++.....+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~a---F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEA---FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTT---TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccccccc-cceechhh---hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 445555665555433 22111222 234456666666533 33334455666666666666554 4444455666666
Q ss_pred CCcEEEcCC
Q 046683 317 NLTFIDLSR 325 (329)
Q Consensus 317 ~L~~L~l~~ 325 (329)
+|+.+++.+
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 666666543
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=2.7e-17 Score=150.34 Aligned_cols=196 Identities=21% Similarity=0.188 Sum_probs=139.8
Q ss_pred ccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcc-------------cccccCcccccCCCccEEE-eecCcCCC
Q 046683 47 SLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANA-------------FSGKIPCEIFLLTHLKFLI-LHSNKLNG 112 (329)
Q Consensus 47 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------i~~~~~~~~~~~~~L~~L~-l~~~~~~~ 112 (329)
..+++|+.|+++++.+. .++..+..+++|+.|+++++. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45677777888777776 345666777777777776553 2334455666677777777 44332211
Q ss_pred CCC------CCC--CCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCC
Q 046683 113 SIP------PLG--NLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGS 184 (329)
Q Consensus 113 ~~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 184 (329)
... .+. ....|+.|++++|.+.. .|. +..+++|+.|++++|++. .+|..+..+++|+.|++++|.+.+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 000 000 11258889999988874 454 888889999999999888 677888889999999999998885
Q ss_pred CCcCcCCCCCccEEEccCCcCCCCC-CccccCCCCCcEEEccCccccCCCCc---cccCCCcccEEEc
Q 046683 185 IPPNVGNLKSLLVLQLDENQLSGCI-PRSFGNLTNLIQLFLSFNNLSGSIPR---EIGNLRSLVQLAL 248 (329)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l 248 (329)
++ .+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+++..+. .+..+|+|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 44 6788899999999999988765 78888899999999999988754332 2345788888854
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=5.6e-14 Score=110.56 Aligned_cols=87 Identities=32% Similarity=0.407 Sum_probs=36.1
Q ss_pred CCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEE
Q 046683 119 NLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVL 198 (329)
Q Consensus 119 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 198 (329)
.+++|++|++++|.+....+..+..+++|++|++++|++....+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 33333333333333333333344444444444444444443333334444444444444444443333333444444444
Q ss_pred EccCCcC
Q 046683 199 QLDENQL 205 (329)
Q Consensus 199 ~l~~~~~ 205 (329)
++++|.+
T Consensus 132 ~L~~N~l 138 (192)
T 1w8a_A 132 NLASNPF 138 (192)
T ss_dssp ECTTCCB
T ss_pred EeCCCCc
Confidence 4444443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=6.8e-14 Score=110.10 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=94.3
Q ss_pred cEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCC
Q 046683 172 NRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251 (329)
Q Consensus 172 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 251 (329)
+.++++++.+.. ++..+ .+++++|++++|.+. ..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567777777763 34333 357888888888887 44567778888888888888888766677888888888888888
Q ss_pred ccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCcccc
Q 046683 252 QFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG 306 (329)
Q Consensus 252 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 306 (329)
.+....+..+. .+++|++|++++|.+....+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFD---GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTT---TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhC---CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88765554443 45788888888888875555567778888888888887753
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=1.2e-13 Score=107.19 Aligned_cols=133 Identities=20% Similarity=0.193 Sum_probs=105.3
Q ss_pred ccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccC
Q 046683 171 LNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQ 250 (329)
Q Consensus 171 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 250 (329)
.+.++++++.+.. .+.. ..++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 5678888887764 3332 236899999999998877677788889999999999999866666788899999999999
Q ss_pred CccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchh
Q 046683 251 NQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNIS 309 (329)
Q Consensus 251 ~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 309 (329)
|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+
T Consensus 86 N~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFD---KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhh---CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 998865544443 45889999999998886555667788999999999999886544
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=3.2e-15 Score=140.76 Aligned_cols=179 Identities=24% Similarity=0.203 Sum_probs=74.7
Q ss_pred CCCcEEecCCcccccccCcccccCCCccEEEe-----ecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCc
Q 046683 74 SKLQLLSLHANAFSGKIPCEIFLLTHLKFLIL-----HSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLS 148 (329)
Q Consensus 74 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 148 (329)
+.++.|++.++.+.. .+..+.....|+.+.+ ..+.+......+..++.|+.|++++|.+. .++..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 456667776666552 2332222222222222 12222212223455566666666666655 3333444566666
Q ss_pred EEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCcc
Q 046683 149 ELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNN 228 (329)
Q Consensus 149 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 228 (329)
+|++++|.++ .+|..+..+++|++|++++|.+. .++..+..+++|++|++++|.+. .++..+..+++|+.|++++|.
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 6666666665 45555666666666666666665 34555555666666666666655 334445566666666666666
Q ss_pred ccCCCCccccCCC-cccEEEccCCccCCCC
Q 046683 229 LSGSIPREIGNLR-SLVQLALDQNQFTGFL 257 (329)
Q Consensus 229 ~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~ 257 (329)
+++..+..+..+. ....+++++|.+.+..
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 6544444443221 1122445555555433
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=2e-13 Score=107.39 Aligned_cols=77 Identities=25% Similarity=0.305 Sum_probs=33.4
Q ss_pred EEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCC-CCCCCCCccEEEccCCc
Q 046683 54 YLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIP-PLGNLNNLVKLFLLNNS 132 (329)
Q Consensus 54 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 132 (329)
.++++++.++..+. .+ .++|+.|++++|.++ .+|..+..+++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus 14 ~l~~~~~~l~~ip~-~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPK-GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCS-CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCC-CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45555555443221 11 134555555555554 344444445555555555544443322 13333344444444333
Q ss_pred cc
Q 046683 133 LS 134 (329)
Q Consensus 133 ~~ 134 (329)
+.
T Consensus 90 l~ 91 (193)
T 2wfh_A 90 LR 91 (193)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=5.7e-13 Score=103.36 Aligned_cols=110 Identities=27% Similarity=0.299 Sum_probs=66.0
Q ss_pred CCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEc
Q 046683 145 KSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFL 224 (329)
Q Consensus 145 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 224 (329)
++|+.|++++|++....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45566666665555444444555666666666666665444444556666666666666666555555566666666666
Q ss_pred cCccccCCCCccccCCCcccEEEccCCccC
Q 046683 225 SFNNLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
++|.+++..+..+..+++|++|++++|++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 666666444445556666666766666665
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=2.6e-12 Score=112.71 Aligned_cols=131 Identities=8% Similarity=-0.007 Sum_probs=56.6
Q ss_pred cCCcccccCCceeEEeecCC---ccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCCCCC
Q 046683 41 LHDFSFSLFPHLAYLDLSFN---ELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPL 117 (329)
Q Consensus 41 ~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 117 (329)
+.+.+|.+|.+|+.+.+..+ .++.....+|..+.+|+.+.+... ++.....+|..+.+|+.+.+......-....+
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F 156 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTSVADGMF 156 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCEECTTTT
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeeeecccce
Confidence 33445555555555555433 133333344455555555444332 22233334455555555555433222122234
Q ss_pred CCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEe
Q 046683 118 GNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLF 175 (329)
Q Consensus 118 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 175 (329)
..+..|+.+.+..+ +..+...+|.. ..|+.+.+...-. .....++..+..++...
T Consensus 157 ~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 157 SYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTIT 211 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEE
T ss_pred ecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceec
Confidence 45555555555443 22233334432 3455555543321 12334444455554443
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=3e-12 Score=112.29 Aligned_cols=276 Identities=11% Similarity=0.096 Sum_probs=176.8
Q ss_pred ccCCcccccCC-ceeEEeecCCccCCCCchhcCCCCCCcEEecCCcc---cccccCcccccCCCccEEEeecCcCCCCCC
Q 046683 40 TLHDFSFSLFP-HLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANA---FSGKIPCEIFLLTHLKFLILHSNKLNGSIP 115 (329)
Q Consensus 40 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 115 (329)
.+.+.+|.+++ .|+.+.+... ++.+...+|.+|.+|+.+.+..+. ++.....+|.++.+|+.+.+..+-..-...
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~ 131 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSE 131 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhh
Confidence 46667898886 5999999653 666667889999999999987653 444455678889999988776653222333
Q ss_pred CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCc
Q 046683 116 PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSL 195 (329)
Q Consensus 116 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 195 (329)
.+..+.+|+.+.+... +.......+..+..|+.+.+..+ +..+...++. ...|+.+.+...... .....+..+..+
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcccc
Confidence 5788899999999764 34466778889999999998765 3334445554 357888887654322 223344444444
Q ss_pred cEEEccCCc------------------------------------CCCCCCccccCCCCCcEEEccCccccCCCCccccC
Q 046683 196 LVLQLDENQ------------------------------------LSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGN 239 (329)
Q Consensus 196 ~~L~l~~~~------------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 239 (329)
+........ +......+|..+.+|+.+.+.+.... .....|..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCccccc
Confidence 444322111 01112234566777888877654332 44456777
Q ss_pred CCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCc
Q 046683 240 LRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLT 319 (329)
Q Consensus 240 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 319 (329)
++.|+.+.+.. .+.......| ..|.+|+.+.+..+ +.......|.+|.+|+.+.+.++ ++.....+|.+|.+|+
T Consensus 287 c~~L~~i~l~~-~i~~I~~~aF---~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPESVF---AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTT---TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred ccccccccCCC-cccccCceee---cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 78888887753 3332222233 35677777777654 44344566777788888877544 5555567777888888
Q ss_pred EEEcCCcc
Q 046683 320 FIDLSRNN 327 (329)
Q Consensus 320 ~L~l~~n~ 327 (329)
.+++.++.
T Consensus 361 ~i~~~~~~ 368 (394)
T 4gt6_A 361 NIEYSGSR 368 (394)
T ss_dssp EEEESSCH
T ss_pred EEEECCce
Confidence 88777654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=8.1e-14 Score=108.10 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=79.6
Q ss_pred cccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcc
Q 046683 164 SMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSL 243 (329)
Q Consensus 164 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 243 (329)
.+..+++|++|++++|.+... +......++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 344566777777777776633 33222233777777777776643 456666777777777777664444445666777
Q ss_pred cEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCc----ccccCCCccEEEecCCccc
Q 046683 244 VQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPK----SLKYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 244 ~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~ 305 (329)
++|++++|++.. .+. +..+..+++|++|++++|.+. ..+. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~~-~~~-~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE-LGD-LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC-GGG-GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCc-chh-hHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777776642 221 122334566666666666665 3333 2555666666666666554
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=1.2e-12 Score=114.73 Aligned_cols=253 Identities=11% Similarity=0.000 Sum_probs=160.2
Q ss_pred ccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeecCcCCCCC-CCCCCCCCccEEEccCC--------
Q 046683 61 ELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSI-PPLGNLNNLVKLFLLNN-------- 131 (329)
Q Consensus 61 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~-------- 131 (329)
.++.+...+|.++.+|+.+.+.. .++.....+|.+|++|+.+++.++ +.... ..+..+.+|+.+.+..+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeeccee
Confidence 35556677899999999999975 466556678999999999999765 33222 23556666655544321
Q ss_pred -------------ccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEE
Q 046683 132 -------------SLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVL 198 (329)
Q Consensus 132 -------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 198 (329)
........+|.++++|+.+.+..+. ......++..+++|+.+.+..+ +.......+..+..|+.+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 1112334668889999999997654 3356678889999999998765 332444556677777766
Q ss_pred EccCCcCC---------------------CCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCC
Q 046683 199 QLDENQLS---------------------GCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFL 257 (329)
Q Consensus 199 ~l~~~~~~---------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 257 (329)
.+..+... ......+..+..++.+.+..+... .....|..+..++.+......+..
T Consensus 214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~-- 290 (394)
T 4fs7_A 214 EFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE-- 290 (394)
T ss_dssp CCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT--
T ss_pred ecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc--
Confidence 66554321 011122233344444444333221 223344444555555444433221
Q ss_pred CCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchhhhhhhcCCCcEEEcCCc
Q 046683 258 PPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNISQALGIYHNLTFIDLSRN 326 (329)
Q Consensus 258 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 326 (329)
. .+..+.+|+.+.+.++ +.......|.+|.+|+.+.+.++ ++.....+|.+|.+|+.+++..+
T Consensus 291 -~---~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 291 -K---TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp -T---TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred -c---cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 1 1335678888888765 44455667889999999999754 66566789999999999998765
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=8.6e-15 Score=137.85 Aligned_cols=191 Identities=22% Similarity=0.277 Sum_probs=113.6
Q ss_pred CceeEEeecCCccCCCCchhcCCCCCCcEE-----ecCCcccccccCcccccCCCccEEEeecCcCCCCCCCCCCCCCcc
Q 046683 50 PHLAYLDLSFNELFGIIPPQIGNLSKLQLL-----SLHANAFSGKIPCEIFLLTHLKFLILHSNKLNGSIPPLGNLNNLV 124 (329)
Q Consensus 50 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L-----~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 124 (329)
+.+++|.+..+.+..... .+.....|+.+ ++..+.+. ..+..+..++.|+.|++++|.+......+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~-~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-ALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchh-hHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 668888888887665322 22222223332 33333333 446678889999999999999887766777899999
Q ss_pred EEEccCCccccCCCcccCCCCCCcEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCc
Q 046683 125 KLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQ 204 (329)
Q Consensus 125 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (329)
+|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .++..+..+++|++|++++|.
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 9999999988 67788899999999999999998 67888999999999999999887 566678899999999999999
Q ss_pred CCCCCCccccCCC-CCcEEEccCccccCCCCccccCCCcccEEEccCC
Q 046683 205 LSGCIPRSFGNLT-NLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQN 251 (329)
Q Consensus 205 ~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 251 (329)
+.+..+..+.... ....+++.+|.+++..+. .|+.|+++.|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 9876666554322 223467888888765543 4556667666
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.4e-13 Score=106.65 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=25.9
Q ss_pred cccCCceeEEeecCCccCCCCchhcCCC-CCCcEEecCCcccccccCcccccCCCccEEEeecCcCC
Q 046683 46 FSLFPHLAYLDLSFNELFGIIPPQIGNL-SKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHSNKLN 111 (329)
Q Consensus 46 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 111 (329)
+..+++|++|++++|.++.. +. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc
Confidence 33444455555555544422 11 2222 2444444444444421 23334444444444444443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=2.8e-15 Score=118.74 Aligned_cols=131 Identities=22% Similarity=0.198 Sum_probs=89.2
Q ss_pred CcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccC
Q 046683 188 NVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRG 267 (329)
Q Consensus 188 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 267 (329)
.+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.++ ..+..+..+++|+.|++++|++.+. + .+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~----~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S----GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H----HHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C----ccccC
Confidence 45556677777777777664 33 5666677777777777776 4555556667788888888877642 1 23455
Q ss_pred CCceEEeccCCcccccCC-cccccCCCccEEEecCCccccchhh----------hhhhcCCCcEEEcCCccc
Q 046683 268 GALQYFGVSENHFQGTIP-KSLKYCTSLFRVRVDGNNLTGNISQ----------ALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~----------~~~~~~~L~~L~l~~n~~ 328 (329)
++|++|++++|.+.+... ..+..+++|+.|++++|++.+..|. .+..+++|+.|| +|++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 778888888887764222 3567788888888888888655443 377888888876 6655
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=3.2e-15 Score=118.38 Aligned_cols=131 Identities=24% Similarity=0.270 Sum_probs=82.3
Q ss_pred CeeEEeecCCCCcCccCC-----cccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCc
Q 046683 26 RVINISLTNTGLSGTLHD-----FSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHL 100 (329)
Q Consensus 26 ~l~~l~l~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L 100 (329)
.++.++++.+.+.|..+. ..+..+++|++|++++|.+... + .+..+++|++|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 455555555555544332 1566777777777777777653 2 5666777777777777776 556656666777
Q ss_pred cEEEeecCcCCCCCCCCCCCCCccEEEccCCccccCCC-cccCCCCCCcEEEccCceeccc
Q 046683 101 KFLILHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIP-PDIGNLKSLSELDLSINQLSGS 160 (329)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 160 (329)
++|++++|.+... +.+..+++|++|++++|.+..... ..+..+++|++|++.+|++...
T Consensus 96 ~~L~L~~N~l~~l-~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 96 EELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEEEEEECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECcCCcCCcC-CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 7777777776643 245566677777777766653222 3456666677777766666543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=7.7e-12 Score=96.21 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=87.4
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEE
Q 046683 194 SLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYF 273 (329)
Q Consensus 194 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L 273 (329)
..+.++++++.+.. .+..+. ++++.|++++|.+++..+..|..+++|++|++++|++.+..+..+. .+++|++|
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~---~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD---KLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---TCTTCCEE
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc---CCCCCCEE
Confidence 46789999998885 444443 7899999999999977788888999999999999999865554443 55889999
Q ss_pred eccCCcccccCCcccccCCCccEEEecCCccccc
Q 046683 274 GVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGN 307 (329)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 307 (329)
++++|++.+..+..+..+++|+.|++++|++...
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999866666788899999999999988754
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=3.9e-14 Score=122.88 Aligned_cols=184 Identities=18% Similarity=0.095 Sum_probs=120.0
Q ss_pred CCCcEEEccCceecccCCccc----c-CCCCccEEecCCcccCCCCCcCc-CCCCCccEEEccCCcCCCCCCccc-----
Q 046683 145 KSLSELDLSINQLSGSIPPSM----G-NLSNLNRLFLYDNLLYGSIPPNV-GNLKSLLVLQLDENQLSGCIPRSF----- 213 (329)
Q Consensus 145 ~~L~~L~l~~~~~~~~~~~~l----~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l----- 213 (329)
+.|+.|++++|.++......+ . ..++|++|++++|.+.+.....+ ..+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 578899999998765433333 2 23689999999998764322222 234678999999998864433333
Q ss_pred cCCCCCcEEEccCccccCC----CCccccCCCcccEEEccCCccCCCCCCcc-cccccCCCceEEeccCCcccccC----
Q 046683 214 GNLTNLIQLFLSFNNLSGS----IPREIGNLRSLVQLALDQNQFTGFLPPSL-GNICRGGALQYFGVSENHFQGTI---- 284 (329)
Q Consensus 214 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~---- 284 (329)
...++|++|++++|.++.. ....+..+++|++|++++|.+.+.....+ ..+..+++|++|++++|.+++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2457899999999988642 22344567889999999998864322221 12345578999999999887533
Q ss_pred CcccccCCCccEEEecCCccccchhhhhhhcCC-----CcEEE--cCCccc
Q 046683 285 PKSLKYCTSLFRVRVDGNNLTGNISQALGIYHN-----LTFID--LSRNNF 328 (329)
Q Consensus 285 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-----L~~L~--l~~n~~ 328 (329)
...+..+++|+.|++++|.+++.....+..+.. ++.+. +.++.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 334456788999999999998877777765432 66666 555543
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.8e-11 Score=94.44 Aligned_cols=106 Identities=18% Similarity=0.259 Sum_probs=86.1
Q ss_pred ccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEe
Q 046683 195 LLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFG 274 (329)
Q Consensus 195 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~ 274 (329)
-+.++++++.+.. .|..+. ++|+.|++++|.+++..+..|..+++|++|++++|++.+..+..+. .+++|++|+
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~---~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD---KLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEE
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC---CcchhhEEE
Confidence 4678999998874 444443 7899999999999977788899999999999999999865444343 558999999
Q ss_pred ccCCcccccCCcccccCCCccEEEecCCcccc
Q 046683 275 VSENHFQGTIPKSLKYCTSLFRVRVDGNNLTG 306 (329)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 306 (329)
+++|++.+..+..+..+++|+.|++++|++..
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99999986555668889999999999998874
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.29 E-value=4.5e-10 Score=97.91 Aligned_cols=276 Identities=11% Similarity=0.044 Sum_probs=128.8
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
.+++.+.+... ++ .+.+.+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......+|..+ +|+.+.
T Consensus 46 ~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred cCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence 35667776643 43 566667888888888888543 555555667666 5666666543 332333344443 677777
Q ss_pred eecCcCCCCCCCCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccCceec--------------------------
Q 046683 105 LHSNKLNGSIPPLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSINQLS-------------------------- 158 (329)
Q Consensus 105 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------------- 158 (329)
+..+........+.. .+++.+.+..+ +.......+..+..++.+.+......
T Consensus 120 lp~~~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 120 FPGATTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CCTTCCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCCcccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 765422211112222 24444444332 22233445555555555554332110
Q ss_pred ---------ccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccc
Q 046683 159 ---------GSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNL 229 (329)
Q Consensus 159 ---------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 229 (329)
......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+.+.+... +
T Consensus 198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i 274 (379)
T 4h09_A 198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V 274 (379)
T ss_dssp EEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C
T ss_pred ccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c
Confidence 011122223334444444322 11122233444455555555443 22233334445555555555332 2
Q ss_pred cCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccccchh
Q 046683 230 SGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLTGNIS 309 (329)
Q Consensus 230 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 309 (329)
+......|..|.+|+.+.+.++.+.......| ..|.+|+.+.+..+ +.......|.+|++|+.+.+..+ ++....
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF---~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~ 349 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF---MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIES 349 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTT---TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eeccccccccccccccccccccccceehhhhh---cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEch
Confidence 22333455555566666555554432222222 24455555555433 33233445555556655555433 333334
Q ss_pred hhhhhcC
Q 046683 310 QALGIYH 316 (329)
Q Consensus 310 ~~~~~~~ 316 (329)
.+|.+++
T Consensus 350 ~aF~~c~ 356 (379)
T 4h09_A 350 GAFEGSS 356 (379)
T ss_dssp TTTTTSS
T ss_pred hHhhCCC
Confidence 4454443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=3e-14 Score=123.63 Aligned_cols=188 Identities=17% Similarity=0.141 Sum_probs=114.7
Q ss_pred CCCccEEEccCCccccCCCcc----cC-CCCCCcEEEccCceecccCCccc-cCCCCccEEecCCcccCCCCCcCc----
Q 046683 120 LNNLVKLFLLNNSLSGSIPPD----IG-NLKSLSELDLSINQLSGSIPPSM-GNLSNLNRLFLYDNLLYGSIPPNV---- 189 (329)
Q Consensus 120 ~~~L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~---- 189 (329)
.+.|+.|++++|.+....... +. ..++|++|++++|.+++.....+ ..+++|++|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357888888888776432222 22 23688888888888764333333 235678888888887764322222
Q ss_pred -CCCCCccEEEccCCcCCCC----CCccccCCCCCcEEEccCccccCCC----CccccCCCcccEEEccCCccCCCCCCc
Q 046683 190 -GNLKSLLVLQLDENQLSGC----IPRSFGNLTNLIQLFLSFNNLSGSI----PREIGNLRSLVQLALDQNQFTGFLPPS 260 (329)
Q Consensus 190 -~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~ 260 (329)
...+.|++|++++|.++.. ++..+...++|++|++++|.+++.. ...+..++.|++|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457888888888887642 2233456778888888888876422 345566678888888888886433222
Q ss_pred cc-ccccCCCceEEeccCCcccccCCcccccC---C--CccEEE--ecCCccccc
Q 046683 261 LG-NICRGGALQYFGVSENHFQGTIPKSLKYC---T--SLFRVR--VDGNNLTGN 307 (329)
Q Consensus 261 l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~l~~~ 307 (329)
+. .+..++.|++|++++|.+++.....+... . .++.+. +.++.+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 22 23345788888888888875444443322 1 155665 555655543
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=5.2e-11 Score=91.52 Aligned_cols=104 Identities=32% Similarity=0.394 Sum_probs=63.8
Q ss_pred cEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCc
Q 046683 148 SELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN 227 (329)
Q Consensus 148 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 227 (329)
+.+++++++++. +|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555555553 33333 255666666666666555555666666666666666666555555666666777777776
Q ss_pred cccCCCCccccCCCcccEEEccCCccC
Q 046683 228 NLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 228 ~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
.+++..+..|..+++|++|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666555555666667777777777665
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=9e-11 Score=90.51 Aligned_cols=104 Identities=27% Similarity=0.346 Sum_probs=63.4
Q ss_pred cEEEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCc
Q 046683 148 SELDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFN 227 (329)
Q Consensus 148 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 227 (329)
+.++++++++. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555554 333333 255666666666666555555666666666666666666555555566666777777777
Q ss_pred cccCCCCccccCCCcccEEEccCCccC
Q 046683 228 NLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 228 ~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
.+++..+..|..+++|++|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666444445666677777777777665
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=1.1e-08 Score=89.08 Aligned_cols=255 Identities=10% Similarity=0.016 Sum_probs=160.1
Q ss_pred CCeeEEeecCCCCcCccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEE
Q 046683 25 GRVINISLTNTGLSGTLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLI 104 (329)
Q Consensus 25 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 104 (329)
.+|+.+++... ++ .+...+|.++ +|+.+.+..+ ++.....+|..+ +|+.+.+... +......+|.++ .++.+.
T Consensus 69 ~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~ 141 (379)
T 4h09_A 69 YNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIV 141 (379)
T ss_dssp TTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEE
T ss_pred CCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeee
Confidence 57888888754 44 5777788887 5777777533 444444556554 7888888654 232223344333 455554
Q ss_pred eecCcCCCCCCCCCCCCCccEEEccCCc-----------------------------------cccCCCcccCCCCCCcE
Q 046683 105 LHSNKLNGSIPPLGNLNNLVKLFLLNNS-----------------------------------LSGSIPPDIGNLKSLSE 149 (329)
Q Consensus 105 l~~~~~~~~~~~~~~~~~L~~L~l~~~~-----------------------------------~~~~~~~~~~~~~~L~~ 149 (329)
+..+-.......+..+..++.+.+.... ........+..+.+++.
T Consensus 142 ~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~ 221 (379)
T 4h09_A 142 IPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKK 221 (379)
T ss_dssp ECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSE
T ss_pred ccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccce
Confidence 4433211111223344444443332210 11123344556677888
Q ss_pred EEccCceecccCCccccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccc
Q 046683 150 LDLSINQLSGSIPPSMGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNL 229 (329)
Q Consensus 150 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 229 (329)
+.+..+ +......++..+..|+.+.+..+ +.......+..+..|+.+.+..+ +.......|..+++|+.+.+.++.+
T Consensus 222 i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i 298 (379)
T 4h09_A 222 ITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAI 298 (379)
T ss_dssp EECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTC
T ss_pred eeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccccc
Confidence 877654 33355677888999999999775 33355567788899999998664 4445566788999999999998888
Q ss_pred cCCCCccccCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccCCcccccCCCc
Q 046683 230 SGSIPREIGNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSL 294 (329)
Q Consensus 230 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 294 (329)
+......|.+|.+|+.+.+..+ +.......| .+|.+|+.+.+..+ +.......|.+|+-+
T Consensus 299 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF---~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 299 ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF---KNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTT---TTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh---hCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 7677789999999999999654 432333333 46788998888654 443445566666443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=3.4e-11 Score=103.64 Aligned_cols=159 Identities=15% Similarity=0.084 Sum_probs=88.0
Q ss_pred ccCCCCccEEecCCcccCCCCCcCcCCCCCccEEEccCCcCCCCCCcccc--CCCCCcEEEccCc--cccCC-----CCc
Q 046683 165 MGNLSNLNRLFLYDNLLYGSIPPNVGNLKSLLVLQLDENQLSGCIPRSFG--NLTNLIQLFLSFN--NLSGS-----IPR 235 (329)
Q Consensus 165 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~-----~~~ 235 (329)
+..+|+|+.|.++++.-. ..+. + ..++|++|++..+.+.......+. .+|+|+.|.|+.+ ...+. ...
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 345567777777665211 1111 2 256777777776665432222222 4677777776421 11111 111
Q ss_pred cc--cCCCcccEEEccCCccCCCCCCcccccccCCCceEEeccCCcccccC----CcccccCCCccEEEecCCccccchh
Q 046683 236 EI--GNLRSLVQLALDQNQFTGFLPPSLGNICRGGALQYFGVSENHFQGTI----PKSLKYCTSLFRVRVDGNNLTGNIS 309 (329)
Q Consensus 236 ~~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~ 309 (329)
.+ ..+|+|+.|++.+|.+.+.....+.....+++|++|+++.|.+.+.. ...+..+++|+.|++++|.+++...
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 22 24678888888877765322222222223567888888887776532 2233456788888888888877666
Q ss_pred hhhhhcCCCcEEEcCCcc
Q 046683 310 QALGIYHNLTFIDLSRNN 327 (329)
Q Consensus 310 ~~~~~~~~L~~L~l~~n~ 327 (329)
..+...- ...+++++++
T Consensus 325 ~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC-CSEEECCSBC
T ss_pred HHHHHHc-CCEEEecCCc
Confidence 6666522 3446776653
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=1.5e-10 Score=99.63 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=95.1
Q ss_pred CcCCCCCccEEEccCCcCCCCCCccccCCCCCcEEEccCccccCCCCcccc--CCCcccEEEccCC--ccCCC-CCCccc
Q 046683 188 NVGNLKSLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNNLSGSIPREIG--NLRSLVQLALDQN--QFTGF-LPPSLG 262 (329)
Q Consensus 188 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~l~~~-~~~~l~ 262 (329)
.+..+|+|+.|++.++.-... +. +. .++|++|.+..+.++......+. .+|+|++|+++.+ ...+. ....+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l-~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI-GK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC-CS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee-cc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 346778999999988732212 22 33 68999999998887644333443 7899999998632 22111 111111
Q ss_pred cc---ccCCCceEEeccCCcccccCCccc---ccCCCccEEEecCCccccchhh----hhhhcCCCcEEEcCCcccC
Q 046683 263 NI---CRGGALQYFGVSENHFQGTIPKSL---KYCTSLFRVRVDGNNLTGNISQ----ALGIYHNLTFIDLSRNNFY 329 (329)
Q Consensus 263 ~~---~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~n~~~ 329 (329)
.. ..+++|++|++.+|++.+.....+ ..+++|+.|+++.|.+++..+. .+..+++|+.|++++|.|+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11 246899999999998875333222 2578999999999999885443 4467899999999999885
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=1.8e-09 Score=92.90 Aligned_cols=102 Identities=21% Similarity=0.157 Sum_probs=85.1
Q ss_pred EeecCC-CCcCccCCcccccCCceeEEeecC-CccCCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEeec
Q 046683 30 ISLTNT-GLSGTLHDFSFSLFPHLAYLDLSF-NELFGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILHS 107 (329)
Q Consensus 30 l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 107 (329)
++++++ .++ .+|. +..+++|++|+|++ |.+....+..|..+++|+.|+|++|++.+..+..|.++++|+.|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455666 666 5666 88889999999996 999988888899999999999999999977778889999999999999
Q ss_pred CcCCCCCCCCCCCCCccEEEccCCccc
Q 046683 108 NKLNGSIPPLGNLNNLVKLFLLNNSLS 134 (329)
Q Consensus 108 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 134 (329)
|.+...++.......|+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 999877765433334999999998775
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=8.2e-09 Score=88.73 Aligned_cols=102 Identities=25% Similarity=0.209 Sum_probs=70.1
Q ss_pred EEecCCc-ccccccCcccccCCCccEEEeec-CcCCCCCC-CCCCCCCccEEEccCCccccCCCcccCCCCCCcEEEccC
Q 046683 78 LLSLHAN-AFSGKIPCEIFLLTHLKFLILHS-NKLNGSIP-PLGNLNNLVKLFLLNNSLSGSIPPDIGNLKSLSELDLSI 154 (329)
Q Consensus 78 ~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 154 (329)
.++.+++ .++ .+|. +..+++|+.|+|++ |.+....+ .+..+++|+.|+|++|.+....+..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 666 5666 77777788888875 77766553 467777777777777777766667777777777777777
Q ss_pred ceecccCCccccCCCCccEEecCCcccC
Q 046683 155 NQLSGSIPPSMGNLSNLNRLFLYDNLLY 182 (329)
Q Consensus 155 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 182 (329)
|++....+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777754444444444 777777777654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=1.5e-09 Score=84.45 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=57.1
Q ss_pred cCCCCCcEEEccCc-cccCC----CCccccCCCcccEEEccCCccCCCCCCccc-ccccCCCceEEeccCCccccc----
Q 046683 214 GNLTNLIQLFLSFN-NLSGS----IPREIGNLRSLVQLALDQNQFTGFLPPSLG-NICRGGALQYFGVSENHFQGT---- 283 (329)
Q Consensus 214 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~---- 283 (329)
...++|++|++++| .+... ....+...+.|++|++++|.+.+.....+. .+...+.|++|++++|.+.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33445555555555 44321 122333445555555555555432211111 122335566666666665532
Q ss_pred CCcccccCCCccEEEe--cCCccccch----hhhhhhcCCCcEEEcCCccc
Q 046683 284 IPKSLKYCTSLFRVRV--DGNNLTGNI----SQALGIYHNLTFIDLSRNNF 328 (329)
Q Consensus 284 ~~~~~~~~~~L~~L~l--~~~~l~~~~----~~~~~~~~~L~~L~l~~n~~ 328 (329)
+...+...++|+.|++ ++|.+++.. ...+...++|++|+|++|+|
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334455566667776 666666543 33344456677777776654
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=1.4e-08 Score=77.19 Aligned_cols=100 Identities=7% Similarity=-0.043 Sum_probs=72.2
Q ss_pred CCCcEEEccCccccCCCCccccCCCcccEEEccCCc-cCCCCCCccccccc----CCCceEEeccCC-cccccCCccccc
Q 046683 217 TNLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQ-FTGFLPPSLGNICR----GGALQYFGVSEN-HFQGTIPKSLKY 290 (329)
Q Consensus 217 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~----~~~L~~L~l~~~-~~~~~~~~~~~~ 290 (329)
..|++|++++|.++......+..+++|++|++++|. +++. .+..+.. +++|++|++++| ++++.....+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~---gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG---CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH---HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH---HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 478999999998887666777889999999999986 5533 2333333 247999999998 588766667778
Q ss_pred CCCccEEEecCCc-cccch--hh-hhhhcCCCc
Q 046683 291 CTSLFRVRVDGNN-LTGNI--SQ-ALGIYHNLT 319 (329)
Q Consensus 291 ~~~L~~L~l~~~~-l~~~~--~~-~~~~~~~L~ 319 (329)
+++|+.|++++|. +++.. .. .-..+|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8999999999985 55432 12 224566665
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=2.1e-08 Score=76.18 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=39.7
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCcEEEccCcc-ccCCCCccccCC----CcccEEEccCCc-cCCCCCCcccccccC
Q 046683 194 SLLVLQLDENQLSGCIPRSFGNLTNLIQLFLSFNN-LSGSIPREIGNL----RSLVQLALDQNQ-FTGFLPPSLGNICRG 267 (329)
Q Consensus 194 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-l~~~~~~~l~~~~~~ 267 (329)
.|++|++++|.++......+..+++|++|++++|. +++.....++.+ +.|++|++++|. +++. .+..+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~---Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK---GIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH---HHHHGGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH---HHHHHhcC
Confidence 45555555555554444444555555555555553 443333333332 345555555553 3322 22223344
Q ss_pred CCceEEeccCC
Q 046683 268 GALQYFGVSEN 278 (329)
Q Consensus 268 ~~L~~L~l~~~ 278 (329)
++|++|++++|
T Consensus 139 ~~L~~L~L~~c 149 (176)
T 3e4g_A 139 RNLKYLFLSDL 149 (176)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEECCCC
Confidence 55555555555
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.23 E-value=3.1e-07 Score=71.31 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=73.1
Q ss_pred CccccCCCcccEEEccCC-ccCCCCCCccc-ccccCCCceEEeccCCcccccC----CcccccCCCccEEEecCCccccc
Q 046683 234 PREIGNLRSLVQLALDQN-QFTGFLPPSLG-NICRGGALQYFGVSENHFQGTI----PKSLKYCTSLFRVRVDGNNLTGN 307 (329)
Q Consensus 234 ~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~ 307 (329)
...+...+.|++|++++| .+.......+. .+...++|++|++++|.+.+.. ...+...++|++|++++|.+++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667899999999999 88643322222 2445689999999999987533 34456678999999999999985
Q ss_pred h----hhhhhhcCCCcEEEc--CCcccC
Q 046683 308 I----SQALGIYHNLTFIDL--SRNNFY 329 (329)
Q Consensus 308 ~----~~~~~~~~~L~~L~l--~~n~~~ 329 (329)
. ...+...++|++|+| ++|.|+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4 556677889999999 889874
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=1.1e-05 Score=65.82 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=38.8
Q ss_pred CCCcccEEEccCCccCCCC--CCcccccccCCCceEEeccCCccccc-CCcccccCCCccEEEecCCccccch-------
Q 046683 239 NLRSLVQLALDQNQFTGFL--PPSLGNICRGGALQYFGVSENHFQGT-IPKSLKYCTSLFRVRVDGNNLTGNI------- 308 (329)
Q Consensus 239 ~~~~L~~L~l~~~~l~~~~--~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~------- 308 (329)
.++.|+.|++++|++.+.. +.. +..+++|+.|++++|++.+. ....+..+ .|+.|++.+|++.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~---~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSI---VQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTH---HHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhH---HhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 3445555555555554311 111 11335555555555555432 01112222 6666677776665422
Q ss_pred hhhhhhcCCCcEEE
Q 046683 309 SQALGIYHNLTFID 322 (329)
Q Consensus 309 ~~~~~~~~~L~~L~ 322 (329)
...+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 24566777777765
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=1e-05 Score=66.06 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=55.6
Q ss_pred ccCCceeEEeecCCccCCC--CchhcCCCCCCcEEecCCcccccccCcccccCC--CccEEEeecCcCCCCCCC------
Q 046683 47 SLFPHLAYLDLSFNELFGI--IPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLT--HLKFLILHSNKLNGSIPP------ 116 (329)
Q Consensus 47 ~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~------ 116 (329)
+++|+|+.|+|++|.++.. ++..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|.+....+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5678888888888888763 234556788888888888888743 2233333 888888888887653331
Q ss_pred --CCCCCCccEEEc
Q 046683 117 --LGNLNNLVKLFL 128 (329)
Q Consensus 117 --~~~~~~L~~L~l 128 (329)
+..+|+|+.|+-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 456788887764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=7.5e-06 Score=63.35 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=26.6
Q ss_pred CCceEEeccCCcccccC----CcccccCCCccEEEecCC---ccccc----hhhhhhhcCCCcEEEcCCc
Q 046683 268 GALQYFGVSENHFQGTI----PKSLKYCTSLFRVRVDGN---NLTGN----ISQALGIYHNLTFIDLSRN 326 (329)
Q Consensus 268 ~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~---~l~~~----~~~~~~~~~~L~~L~l~~n 326 (329)
..|+.|++++|++.+.. .+.+...+.|+.|+++++ .+.+. +..++...+.|+.|+++.|
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 44555555555544321 222333445555555543 23321 3334444555555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=4.4e-05 Score=59.07 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=63.6
Q ss_pred cccCCCcccEEEccCC-ccCCCCCCcc-cccccCCCceEEeccCCccccc----CCcccccCCCccEEEecCCccccchh
Q 046683 236 EIGNLRSLVQLALDQN-QFTGFLPPSL-GNICRGGALQYFGVSENHFQGT----IPKSLKYCTSLFRVRVDGNNLTGNIS 309 (329)
Q Consensus 236 ~~~~~~~L~~L~l~~~-~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~ 309 (329)
.+..-+.|++|+++++ .+.......+ ..+.....|+.|++++|++.+. +.+.+...+.|+.|++++|.|++...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3345577888888775 6643211111 2234567899999999988753 34455677999999999999998654
Q ss_pred h----hhhhcCCCcEEEcCCc
Q 046683 310 Q----ALGIYHNLTFIDLSRN 326 (329)
Q Consensus 310 ~----~~~~~~~L~~L~l~~n 326 (329)
. ++...+.|+.|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 4 4556678999999876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0021 Score=46.18 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=35.9
Q ss_pred EEEccCCccC-CCCCCcccccccCCCceEEeccCCcccccCCcccccCCCccEEEecCCccc
Q 046683 245 QLALDQNQFT-GFLPPSLGNICRGGALQYFGVSENHFQGTIPKSLKYCTSLFRVRVDGNNLT 305 (329)
Q Consensus 245 ~L~l~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 305 (329)
.++.+++.++ ..++..+. .++++|++++|++....+..|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666664 13333332 46777788877777555566677777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.92 E-value=0.023 Score=40.74 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=20.4
Q ss_pred CCcEEEccCccccCCCCccccCCCcccEEEccCCccC
Q 046683 218 NLIQLFLSFNNLSGSIPREIGNLRSLVQLALDQNQFT 254 (329)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 254 (329)
+++.|+|++|.++......|..+++|+.|++.+|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555555444445555555555666555553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.26 E-value=1.6 Score=29.22 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=19.4
Q ss_pred CCCCchhcCCCCCCcEEecCCcccccccCcccccCCCccEEEee
Q 046683 63 FGIIPPQIGNLSKLQLLSLHANAFSGKIPCEIFLLTHLKFLILH 106 (329)
Q Consensus 63 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 106 (329)
+.+...+|.+|.+|+.+.|... ++.....+|.+|.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3333344455555555555432 332333444455555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.03 E-value=4.7 Score=26.92 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=35.3
Q ss_pred ccCCcccccCCceeEEeecCCccCCCCchhcCCCCCCcEEecCCc
Q 046683 40 TLHDFSFSLFPHLAYLDLSFNELFGIIPPQIGNLSKLQLLSLHAN 84 (329)
Q Consensus 40 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 84 (329)
.+...+|.+|..|+++.|..+ ++.+-..+|.+|.+|+.+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 466668999999999999654 45566678999999999999764
Done!