BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046684
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 225 FDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG---DACVWELSEGGDDDIWC 281
+D + W+EL+ R F V + + G T G A V+ ++ D+ W
Sbjct: 170 YDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSIT----DNKWA 225
Query: 282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGM-----IIWREDEDKRKWE 336
E P E R S S GT A G G L E G + IWR +E+++KWE
Sbjct: 226 PFEAFPQE---RSSLSLVSLVGTLYAIG-GFATLETESGELVPTELNDIWRYNEEEKKWE 281
Query: 337 WV 338
V
Sbjct: 282 GV 283
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 152 IYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGML 211
IYV+GG G+ + +E YD D W ++G M T V G++
Sbjct: 115 IYVSGGFD-----GSRRHTSMERYDPNIDQWSMLGDMQ-------TAREGAGLVVASGVI 162
Query: 212 YWITSARAYSVIG----FDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG 263
Y + +++ +D + W ++ PMA + A + N + ++GG G
Sbjct: 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVT-PMATKRSGAGVALLNDHIYVVGGFDG 217
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 20/81 (24%)
Query: 149 NFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTR 208
N IYV GG G + S VE Y+ R D+W + SM TP C
Sbjct: 206 NDHIYVVGGFD-----GTAHLSSVEAYNIRTDSWTTVTSMT----------TPR---CYV 247
Query: 209 GMLYWITSARAYSVIGFDIES 229
G + R Y++ G+D S
Sbjct: 248 GAT--VLRGRLYAIAGYDGNS 266
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 30/155 (19%)
Query: 107 LQLVLC-NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG 165
L V C N T ++ Y+ ++ R+ VG++ N +Y GG G
Sbjct: 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-----------NNLLYAVGGHD-----G 215
Query: 166 ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWI----TSARAY 220
VE+YD +AW+ + M + N VC G+LY + S
Sbjct: 216 PLVRKSVEVYDPTTNAWRQVADM--------NMCRRNAGVCAVNGLLYVVGGDDGSCNLA 267
Query: 221 SVIGFDIESNTWRELSAPMADRLEFATLVSRNQKL 255
SV ++ ++ W +S+ M+ +A + +++L
Sbjct: 268 SVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172
NP T Q+ ++V R VG++ + IY GG G + S V
Sbjct: 90 NPMTNQWSPCASMSVPRNRIGVGVI-----------DGHIYAVGGSH-----GCIHHSSV 133
Query: 173 EMYDSRHDAWQIIGSM 188
E Y+ D W ++ M
Sbjct: 134 ERYEPERDEWHLVAPM 149
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 103 NSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEP 162
N+ L NP T Q+ ++V R VG++ + IY GG
Sbjct: 79 NTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVI-----------DGHIYAVGGSH--- 124
Query: 163 RGGATYESMVEMYDSRHDAWQIIGSM 188
G + S VE Y+ D W ++ M
Sbjct: 125 --GCIHHSSVERYEPERDEWHLVAPM 148
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGA---ICLYREVGL 321
+I+++P MG++ + G CA NG +CLYR GL
Sbjct: 549 IIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGL 591
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGA---ICLYREVGL 321
+I+++P MG++ + G CA NG +CLYR GL
Sbjct: 557 IIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGL 599
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 27/139 (19%)
Query: 103 NSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEP 162
N+ L NP T Q+ ++V R VG++ + IY GG
Sbjct: 87 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-----------DGHIYAVGGSH--- 132
Query: 163 RGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWI----TSAR 218
G + + VE Y+ D W ++ M R+ V +V R +LY + + R
Sbjct: 133 --GCIHHNSVERYEPERDEWHLVAPM---LTRRIGVGV---AVLNR-LLYAVGGFDGTNR 183
Query: 219 AYSVIGFDIESNTWRELSA 237
S + E N WR ++A
Sbjct: 184 LNSAECYYPERNEWRMITA 202
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 27/139 (19%)
Query: 103 NSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEP 162
N+ L NP T Q+ ++V R VG++ + IY GG
Sbjct: 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-----------DGHIYAVGGSH--- 131
Query: 163 RGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWI----TSAR 218
G + + VE Y+ D W ++ M R+ V +V R +LY + + R
Sbjct: 132 --GCIHHNSVERYEPERDEWHLVAPM---LTRRIGVGV---AVLNR-LLYAVGGFDGTNR 182
Query: 219 AYSVIGFDIESNTWRELSA 237
S + E N WR ++A
Sbjct: 183 LNSAECYYPERNEWRMITA 201
>pdb|4EBY|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like
Kinase
pdb|4EBZ|A Chain A, Crystal Structure Of The Ectodomain Of A Receptor Like
Kinase
Length = 212
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 82 FLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIV-MEG 140
F+ YP+RP S+ S +++ ILQ RY P +N + N GIV + G
Sbjct: 143 FVTYPLRPEDSLSSIARSSGVSADILQ-----------RYNPGVNFNSGN---GIVYVPG 188
Query: 141 PAQHGPFPNFRIYVAGGM 158
+G FP F+ G+
Sbjct: 189 RDPNGAFPPFKSSKQDGV 206
>pdb|1IVA|A Chain A, Structure-Activity Relationships For P-Type Calcium
Channel Selective Omega-Agatoxins
pdb|1OAV|A Chain A, Omega-Agatoxin Iva
pdb|1OAW|A Chain A, Omega-Agatoxin Iva
Length = 48
Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 297 GKASWGGTRCAAGNGAIC 314
G+ WGGT C G G IC
Sbjct: 10 GRCKWGGTPCCRGRGCIC 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,514,064
Number of Sequences: 62578
Number of extensions: 549786
Number of successful extensions: 1270
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 25
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)