Query 046684
Match_columns 373
No_of_seqs 210 out of 2495
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 5.4E-36 1.2E-40 282.3 27.7 255 50-348 284-560 (571)
2 PHA02713 hypothetical protein; 100.0 6.3E-35 1.4E-39 276.3 24.2 236 63-341 272-541 (557)
3 KOG4441 Proteins containing BT 100.0 1.3E-29 2.8E-34 239.2 21.8 227 29-285 310-555 (571)
4 PHA03098 kelch-like protein; P 100.0 5.4E-29 1.2E-33 237.9 24.8 238 64-345 265-523 (534)
5 PLN02153 epithiospecifier prot 100.0 1.7E-28 3.7E-33 221.0 26.7 235 70-342 4-293 (341)
6 PHA02713 hypothetical protein; 100.0 5.4E-29 1.2E-33 236.0 21.3 214 50-286 303-543 (557)
7 PLN02193 nitrile-specifier pro 100.0 1.7E-27 3.8E-32 222.1 28.6 241 65-344 139-421 (470)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 1.5E-27 3.3E-32 215.6 25.6 239 79-346 2-311 (346)
9 PLN02153 epithiospecifier prot 100.0 2.1E-27 4.6E-32 213.9 26.3 253 50-329 32-339 (341)
10 PHA02790 Kelch-like protein; P 100.0 7.4E-28 1.6E-32 225.2 23.6 201 90-340 267-477 (480)
11 PHA02790 Kelch-like protein; P 100.0 1.3E-27 2.8E-32 223.5 23.3 200 50-283 271-477 (480)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 5.1E-27 1.1E-31 212.2 25.1 236 51-320 18-331 (346)
13 PRK14131 N-acetylneuraminic ac 100.0 3.4E-26 7.5E-31 208.2 27.5 252 50-339 38-374 (376)
14 TIGR03548 mutarot_permut cycli 100.0 3.8E-26 8.2E-31 204.3 25.3 219 64-320 40-313 (323)
15 TIGR03548 mutarot_permut cycli 100.0 6.1E-26 1.3E-30 203.0 25.4 224 85-345 4-291 (323)
16 PRK14131 N-acetylneuraminic ac 99.9 1.1E-25 2.3E-30 205.0 24.7 245 74-346 18-333 (376)
17 PHA03098 kelch-like protein; P 99.9 1E-25 2.3E-30 215.3 23.5 213 51-290 295-525 (534)
18 PLN02193 nitrile-specifier pro 99.9 1.2E-24 2.6E-29 203.1 27.9 254 50-329 175-468 (470)
19 KOG4693 Uncharacterized conser 99.9 7.6E-25 1.6E-29 177.1 17.1 266 62-369 43-352 (392)
20 TIGR01640 F_box_assoc_1 F-box 99.9 4.9E-21 1.1E-25 162.9 25.2 214 91-333 2-230 (230)
21 KOG4693 Uncharacterized conser 99.9 1.5E-21 3.3E-26 158.1 16.7 224 84-342 13-285 (392)
22 KOG0379 Kelch repeat-containin 99.8 7.3E-18 1.6E-22 157.2 21.5 228 81-344 57-312 (482)
23 KOG0379 Kelch repeat-containin 99.8 5.3E-17 1.1E-21 151.5 21.3 202 64-287 89-312 (482)
24 KOG1230 Protein containing rep 99.8 2E-17 4.2E-22 142.2 16.7 230 81-340 63-347 (521)
25 KOG1230 Protein containing rep 99.7 3.2E-16 7E-21 134.8 18.6 253 3-283 34-347 (521)
26 KOG4152 Host cell transcriptio 99.7 1.5E-15 3.3E-20 133.9 17.5 265 31-320 18-342 (830)
27 KOG4152 Host cell transcriptio 99.6 2.6E-15 5.6E-20 132.5 13.5 237 73-341 17-310 (830)
28 PLN03215 ascorbic acid mannose 99.6 3.2E-13 7E-18 118.9 20.0 292 2-333 4-348 (373)
29 COG3055 Uncharacterized protei 99.5 1.1E-11 2.3E-16 105.7 18.2 226 89-345 41-338 (381)
30 COG3055 Uncharacterized protei 99.4 2.9E-11 6.3E-16 103.1 17.7 226 63-320 58-359 (381)
31 PF12937 F-box-like: F-box-lik 99.1 9.4E-11 2E-15 72.3 2.8 43 2-44 1-43 (47)
32 PF13964 Kelch_6: Kelch motif 98.9 4.1E-09 8.9E-14 66.0 5.5 46 84-129 1-50 (50)
33 PF00646 F-box: F-box domain; 98.8 7.8E-10 1.7E-14 68.7 0.9 42 2-43 3-44 (48)
34 smart00256 FBOX A Receptor for 98.8 4.6E-09 1E-13 62.8 2.1 39 5-43 1-39 (41)
35 PF08268 FBA_3: F-box associat 98.7 6E-07 1.3E-11 68.7 13.8 84 205-289 2-94 (129)
36 PF13964 Kelch_6: Kelch motif 98.7 3.5E-08 7.6E-13 61.7 5.5 47 128-190 1-48 (50)
37 PF07734 FBA_1: F-box associat 98.7 2.7E-06 5.9E-11 68.1 16.9 85 205-291 2-98 (164)
38 PF01344 Kelch_1: Kelch motif; 98.6 5.8E-08 1.3E-12 59.9 3.6 46 128-189 1-47 (47)
39 KOG0281 Beta-TrCP (transducin 98.5 3.6E-06 7.8E-11 71.9 12.8 42 3-44 76-121 (499)
40 PF07646 Kelch_2: Kelch motif; 98.4 6.5E-07 1.4E-11 55.6 5.4 49 128-189 1-49 (49)
41 PF01344 Kelch_1: Kelch motif; 98.4 3.4E-07 7.3E-12 56.4 3.5 43 84-126 1-47 (47)
42 PF07250 Glyoxal_oxid_N: Glyox 98.4 1.4E-05 3E-10 67.2 13.8 159 169-346 45-211 (243)
43 smart00612 Kelch Kelch domain. 98.3 1.3E-06 2.8E-11 53.7 4.7 47 151-209 1-47 (47)
44 PF13360 PQQ_2: PQQ-like domai 98.3 0.00036 7.7E-09 59.5 21.6 215 64-338 4-237 (238)
45 PF13418 Kelch_4: Galactose ox 98.3 1.3E-06 2.7E-11 54.3 4.1 47 128-189 1-48 (49)
46 KOG2437 Muskelin [Signal trans 98.2 2.1E-06 4.5E-11 76.9 6.0 200 113-333 235-475 (723)
47 PF07250 Glyoxal_oxid_N: Glyox 98.2 2.3E-05 4.9E-10 65.9 10.5 152 64-241 47-210 (243)
48 PF13415 Kelch_3: Galactose ox 98.1 5.3E-06 1.1E-10 51.4 4.2 43 94-136 1-48 (49)
49 PF13418 Kelch_4: Galactose ox 98.1 4E-06 8.6E-11 52.0 3.3 43 84-126 1-48 (49)
50 PF07646 Kelch_2: Kelch motif; 98.0 1.2E-05 2.7E-10 49.7 5.0 43 84-126 1-49 (49)
51 PF13415 Kelch_3: Galactose ox 98.0 2E-05 4.2E-10 48.8 4.8 47 150-206 2-48 (49)
52 KOG2437 Muskelin [Signal trans 97.9 8E-06 1.7E-10 73.3 4.0 151 179-340 238-419 (723)
53 KOG0274 Cdc4 and related F-box 97.9 0.0016 3.4E-08 61.9 19.5 275 3-333 109-402 (537)
54 smart00612 Kelch Kelch domain. 97.8 4.1E-05 8.8E-10 46.8 4.9 42 97-138 2-46 (47)
55 PRK11138 outer membrane biogen 97.8 0.014 3E-07 54.0 23.4 218 63-339 79-320 (394)
56 KOG2120 SCF ubiquitin ligase, 97.8 1.2E-05 2.5E-10 68.2 2.2 43 2-44 98-140 (419)
57 PRK11138 outer membrane biogen 97.7 0.0095 2.1E-07 55.1 21.1 200 90-339 65-282 (394)
58 TIGR03300 assembly_YfgL outer 97.7 0.029 6.2E-07 51.6 23.8 215 63-339 75-305 (377)
59 TIGR01640 F_box_assoc_1 F-box 97.7 0.023 4.9E-07 48.2 21.7 190 63-273 14-229 (230)
60 PF07893 DUF1668: Protein of u 97.5 0.015 3.4E-07 52.3 18.7 129 91-238 73-216 (342)
61 PLN02772 guanylate kinase 97.4 0.0014 3.1E-08 58.9 9.8 76 198-273 24-107 (398)
62 PLN02772 guanylate kinase 97.3 0.0018 3.8E-08 58.3 9.6 82 128-229 24-109 (398)
63 TIGR03866 PQQ_ABC_repeats PQQ- 97.3 0.11 2.3E-06 45.6 22.5 226 63-333 11-239 (300)
64 PF13854 Kelch_5: Kelch motif 97.2 0.00097 2.1E-08 39.6 4.6 41 125-179 1-41 (42)
65 TIGR03300 assembly_YfgL outer 97.2 0.17 3.7E-06 46.5 21.6 198 89-340 60-268 (377)
66 PF08450 SGL: SMP-30/Gluconola 97.2 0.13 2.8E-06 44.1 19.8 198 94-341 11-221 (246)
67 TIGR03866 PQQ_ABC_repeats PQQ- 97.1 0.16 3.5E-06 44.5 23.6 221 63-333 53-281 (300)
68 PF05096 Glu_cyclase_2: Glutam 97.0 0.042 9.1E-07 46.7 14.1 184 150-367 56-244 (264)
69 PF07893 DUF1668: Protein of u 96.9 0.058 1.3E-06 48.7 15.2 130 207-347 75-221 (342)
70 PRK05137 tolB translocation pr 96.8 0.43 9.4E-06 44.8 24.6 233 62-341 181-420 (435)
71 COG4257 Vgb Streptogramin lyas 96.8 0.23 5E-06 42.2 16.5 227 65-342 85-314 (353)
72 PRK04792 tolB translocation pr 96.7 0.6 1.3E-05 44.0 26.0 223 63-329 198-425 (448)
73 PF02191 OLF: Olfactomedin-lik 96.6 0.4 8.7E-06 41.0 19.5 174 150-364 31-229 (250)
74 PF13360 PQQ_2: PQQ-like domai 96.6 0.23 4.9E-06 42.1 16.2 139 171-340 4-149 (238)
75 PF10282 Lactonase: Lactonase, 96.5 0.6 1.3E-05 42.3 25.3 266 63-364 15-302 (345)
76 KOG0310 Conserved WD40 repeat- 96.5 0.33 7.1E-06 44.2 16.7 243 48-348 36-281 (487)
77 PF05096 Glu_cyclase_2: Glutam 96.5 0.13 2.7E-06 43.9 13.4 103 207-329 54-157 (264)
78 PTZ00421 coronin; Provisional 96.5 0.84 1.8E-05 43.4 22.0 138 208-371 179-321 (493)
79 PRK11028 6-phosphogluconolacto 96.5 0.63 1.4E-05 41.8 26.7 120 210-344 188-317 (330)
80 KOG0310 Conserved WD40 repeat- 96.4 0.069 1.5E-06 48.4 12.0 176 113-333 8-186 (487)
81 smart00284 OLF Olfactomedin-li 96.4 0.5 1.1E-05 40.3 16.9 176 150-364 35-234 (255)
82 KOG2055 WD40 repeat protein [G 96.4 0.72 1.6E-05 41.9 19.7 261 52-366 226-495 (514)
83 KOG2997 F-box protein FBX9 [Ge 96.4 0.0012 2.7E-08 56.4 0.8 42 3-44 108-154 (366)
84 PRK11028 6-phosphogluconolacto 96.3 0.19 4.1E-06 45.2 15.0 138 170-329 12-156 (330)
85 KOG2055 WD40 repeat protein [G 96.3 0.24 5.3E-06 44.8 14.7 192 94-329 224-417 (514)
86 PRK04792 tolB translocation pr 96.3 1.1 2.3E-05 42.4 21.3 157 52-235 231-389 (448)
87 PRK00178 tolB translocation pr 96.2 1.1 2.4E-05 42.0 21.4 191 52-273 212-405 (430)
88 PRK00178 tolB translocation pr 96.1 1.3 2.8E-05 41.5 22.5 192 94-329 210-406 (430)
89 PF13854 Kelch_5: Kelch motif 95.9 0.024 5.2E-07 33.5 4.5 35 82-116 2-41 (42)
90 PF08450 SGL: SMP-30/Gluconola 95.7 0.89 1.9E-05 38.9 15.6 140 150-329 12-164 (246)
91 PF03178 CPSF_A: CPSF A subuni 95.7 1.5 3.2E-05 39.3 18.1 165 107-290 2-173 (321)
92 TIGR02800 propeller_TolB tol-p 95.7 1.8 3.9E-05 40.3 23.5 181 106-329 213-397 (417)
93 KOG0286 G-protein beta subunit 95.6 1.2 2.6E-05 38.2 15.1 152 150-333 109-261 (343)
94 TIGR02658 TTQ_MADH_Hv methylam 95.6 1.7 3.6E-05 39.3 24.1 115 208-343 205-338 (352)
95 KOG0316 Conserved WD40 repeat- 95.4 1.3 2.9E-05 36.8 18.6 112 90-233 67-178 (307)
96 PTZ00420 coronin; Provisional 95.3 3.1 6.7E-05 40.3 20.0 138 208-370 178-323 (568)
97 PF12768 Rax2: Cortical protei 95.2 0.47 1E-05 41.3 12.0 106 168-285 14-130 (281)
98 PRK04922 tolB translocation pr 95.1 2.9 6.3E-05 39.2 23.1 192 94-333 215-413 (433)
99 KOG0316 Conserved WD40 repeat- 95.1 1.7 3.6E-05 36.2 14.4 145 94-273 28-174 (307)
100 PRK04922 tolB translocation pr 95.0 3.2 6.9E-05 39.0 21.0 190 53-273 218-410 (433)
101 COG4257 Vgb Streptogramin lyas 94.7 0.87 1.9E-05 38.8 11.5 121 90-240 195-317 (353)
102 PF10282 Lactonase: Lactonase, 94.6 3.3 7.2E-05 37.5 24.0 203 108-345 16-236 (345)
103 KOG0291 WD40-repeat-containing 94.6 4.9 0.00011 39.3 22.3 217 84-364 309-531 (893)
104 PRK02889 tolB translocation pr 94.6 4 8.7E-05 38.2 24.1 223 62-329 175-403 (427)
105 PF14870 PSII_BNR: Photosynthe 94.5 3.1 6.8E-05 36.7 17.2 153 150-342 28-183 (302)
106 cd00200 WD40 WD40 domain, foun 94.5 2.6 5.6E-05 35.8 17.5 104 209-333 105-209 (289)
107 KOG2321 WD40 repeat protein [G 94.5 1.9 4.1E-05 40.6 14.1 113 95-235 146-265 (703)
108 PF03089 RAG2: Recombination a 94.1 0.84 1.8E-05 39.0 10.4 84 122-217 81-173 (337)
109 TIGR02800 propeller_TolB tol-p 94.0 5.2 0.00011 37.1 21.4 144 63-235 214-361 (417)
110 cd00216 PQQ_DH Dehydrogenases 94.0 6 0.00013 37.8 21.2 118 90-235 57-192 (488)
111 cd00200 WD40 WD40 domain, foun 93.5 4.1 8.9E-05 34.5 23.2 103 209-333 147-251 (289)
112 PRK03629 tolB translocation pr 93.5 6.7 0.00014 36.8 26.2 223 62-329 178-406 (429)
113 KOG0289 mRNA splicing factor [ 93.3 4.1 8.8E-05 37.1 13.6 104 170-290 369-476 (506)
114 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.1 2.5 5.4E-05 40.8 13.3 116 90-235 65-198 (527)
115 PF09910 DUF2139: Uncharacteri 92.8 6 0.00013 34.3 13.7 100 220-337 78-185 (339)
116 PLN00181 protein SPA1-RELATED; 92.7 11 0.00023 38.6 18.0 107 208-329 629-738 (793)
117 PRK03629 tolB translocation pr 92.7 8.9 0.00019 36.0 21.0 170 63-263 223-395 (429)
118 KOG0270 WD40 repeat-containing 92.4 7.1 0.00015 35.6 13.9 178 106-333 265-451 (463)
119 PF07433 DUF1513: Protein of u 92.2 7.6 0.00017 34.1 20.3 246 50-329 16-285 (305)
120 PRK05137 tolB translocation pr 92.2 10 0.00022 35.6 21.7 156 52-235 215-373 (435)
121 PLN00181 protein SPA1-RELATED; 92.2 15 0.00033 37.6 20.6 198 94-328 587-792 (793)
122 KOG2048 WD40 repeat protein [G 91.9 13 0.00027 36.0 21.0 240 64-355 48-299 (691)
123 PRK04043 tolB translocation pr 91.9 11 0.00024 35.2 20.2 179 62-273 212-399 (419)
124 KOG0266 WD40 repeat-containing 91.5 13 0.00028 35.2 16.8 192 92-333 212-411 (456)
125 PF03178 CPSF_A: CPSF A subuni 91.5 3.3 7.2E-05 37.0 11.5 135 107-273 62-203 (321)
126 PLN03215 ascorbic acid mannose 91.3 10 0.00022 34.5 14.0 141 72-235 189-353 (373)
127 KOG0279 G protein beta subunit 91.2 8.8 0.00019 32.9 14.6 101 210-333 162-264 (315)
128 PRK02889 tolB translocation pr 91.1 13 0.00029 34.7 21.6 144 170-340 220-367 (427)
129 COG4946 Uncharacterized protei 91.1 13 0.00028 34.5 16.8 155 90-273 231-391 (668)
130 PF02897 Peptidase_S9_N: Proly 90.9 14 0.00029 34.4 21.6 144 169-340 251-411 (414)
131 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.7 4.4 9.5E-05 39.1 12.0 119 203-340 64-198 (527)
132 KOG4341 F-box protein containi 90.6 0.14 2.9E-06 46.2 1.6 40 4-43 74-113 (483)
133 KOG0291 WD40-repeat-containing 90.5 19 0.00041 35.5 21.4 159 90-288 357-519 (893)
134 KOG0289 mRNA splicing factor [ 90.5 7.9 0.00017 35.3 12.2 122 203-346 352-475 (506)
135 cd00216 PQQ_DH Dehydrogenases 90.4 17 0.00037 34.7 17.4 172 150-339 62-272 (488)
136 PF06433 Me-amine-dh_H: Methyl 90.3 13 0.00028 33.3 15.6 66 252-333 249-322 (342)
137 KOG0293 WD40 repeat-containing 90.3 13 0.00027 33.9 13.2 178 106-333 290-472 (519)
138 KOG0649 WD40 repeat protein [G 90.2 8.5 0.00018 32.4 11.3 111 208-333 126-237 (325)
139 TIGR03074 PQQ_membr_DH membran 90.1 6.5 0.00014 39.6 12.9 32 202-235 188-221 (764)
140 COG4946 Uncharacterized protei 90.0 16 0.00035 33.9 20.3 70 207-283 369-438 (668)
141 PF12768 Rax2: Cortical protei 90.0 3.1 6.8E-05 36.3 9.4 101 219-342 15-130 (281)
142 PF02191 OLF: Olfactomedin-lik 89.8 12 0.00026 32.1 14.7 158 86-272 70-247 (250)
143 KOG0305 Anaphase promoting com 89.7 14 0.0003 34.9 13.7 147 92-273 186-332 (484)
144 KOG2321 WD40 repeat protein [G 89.4 20 0.00043 34.1 15.4 100 62-181 154-261 (703)
145 PF03089 RAG2: Recombination a 89.1 14 0.0003 31.9 15.0 53 220-272 131-188 (337)
146 PRK04043 tolB translocation pr 89.1 20 0.00042 33.6 23.8 188 97-329 203-400 (419)
147 PLN02919 haloacid dehalogenase 89.0 34 0.00074 36.3 27.4 212 93-333 634-890 (1057)
148 PF08268 FBA_3: F-box associat 88.6 8.8 0.00019 29.0 10.9 81 92-187 3-89 (129)
149 COG2706 3-carboxymuconate cycl 88.3 18 0.00039 32.2 26.7 157 169-342 166-332 (346)
150 PF13859 BNR_3: BNR repeat-lik 88.2 15 0.00032 32.7 12.4 134 150-287 70-217 (310)
151 KOG0649 WD40 repeat protein [G 87.8 16 0.00034 30.9 15.5 167 117-329 99-274 (325)
152 KOG1445 Tumor-specific antigen 87.7 16 0.00034 35.3 12.6 131 219-370 741-876 (1012)
153 KOG0296 Angio-associated migra 87.2 21 0.00046 31.9 19.7 145 94-273 75-221 (399)
154 COG1520 FOG: WD40-like repeat 86.8 25 0.00053 32.2 21.4 206 90-341 64-278 (370)
155 PF02239 Cytochrom_D1: Cytochr 86.8 23 0.0005 32.4 13.4 180 63-273 16-203 (369)
156 PF02239 Cytochrom_D1: Cytochr 86.6 26 0.00056 32.1 14.4 189 94-333 5-204 (369)
157 PRK13684 Ycf48-like protein; P 86.6 24 0.00052 31.8 17.7 124 176-329 200-331 (334)
158 KOG0281 Beta-TrCP (transducin 86.3 9.2 0.0002 33.9 9.7 106 204-333 325-430 (499)
159 PF14870 PSII_BNR: Photosynthe 86.0 24 0.00052 31.3 16.5 218 73-343 47-271 (302)
160 PRK01742 tolB translocation pr 85.6 32 0.00069 32.2 20.1 182 52-271 217-400 (429)
161 PF14583 Pectate_lyase22: Olig 85.4 24 0.00052 32.2 12.3 198 94-334 47-275 (386)
162 smart00284 OLF Olfactomedin-li 85.2 23 0.0005 30.4 16.1 159 85-272 74-252 (255)
163 PLN02919 haloacid dehalogenase 85.2 56 0.0012 34.7 24.4 221 90-342 575-842 (1057)
164 KOG0315 G-protein beta subunit 85.1 22 0.00049 30.1 16.1 184 97-329 12-197 (311)
165 KOG0263 Transcription initiati 84.8 11 0.00025 36.8 10.4 109 204-329 541-649 (707)
166 KOG4649 PQQ (pyrrolo-quinoline 84.1 26 0.00056 30.0 12.2 111 205-338 17-130 (354)
167 PF02897 Peptidase_S9_N: Proly 83.8 27 0.00058 32.5 12.7 158 49-235 237-411 (414)
168 TIGR02658 TTQ_MADH_Hv methylam 83.7 24 0.00052 32.0 11.6 112 220-347 27-148 (352)
169 KOG2106 Uncharacterized conser 83.6 39 0.00086 31.7 19.4 183 63-288 222-410 (626)
170 COG1520 FOG: WD40-like repeat 83.2 37 0.0008 31.0 17.4 139 63-234 78-225 (370)
171 KOG0286 G-protein beta subunit 82.7 32 0.00068 30.0 17.1 144 94-271 156-302 (343)
172 COG2706 3-carboxymuconate cycl 82.3 36 0.00078 30.4 28.2 243 94-369 51-306 (346)
173 KOG0303 Actin-binding protein 82.3 39 0.00084 30.7 13.5 140 170-333 154-296 (472)
174 KOG0299 U3 snoRNP-associated p 81.8 43 0.00094 30.9 17.1 86 203-291 332-427 (479)
175 TIGR03074 PQQ_membr_DH membran 81.8 59 0.0013 33.1 14.6 131 89-235 189-353 (764)
176 KOG0300 WD40 repeat-containing 81.3 36 0.00077 29.9 11.0 75 257-350 371-445 (481)
177 KOG0647 mRNA export protein (c 81.1 19 0.0004 31.4 9.3 100 208-329 83-184 (347)
178 PF12217 End_beta_propel: Cata 80.9 17 0.00037 31.0 8.8 58 204-261 196-258 (367)
179 KOG3545 Olfactomedin and relat 80.8 34 0.00073 29.0 16.5 155 179-364 55-228 (249)
180 KOG0279 G protein beta subunit 80.3 38 0.00082 29.3 16.5 130 208-368 116-248 (315)
181 KOG1446 Histone H3 (Lys4) meth 79.3 43 0.00093 29.3 13.8 131 170-329 36-170 (311)
182 KOG0296 Angio-associated migra 79.2 48 0.001 29.8 14.0 144 150-334 76-223 (399)
183 KOG0278 Serine/threonine kinas 78.4 41 0.00089 28.6 11.0 62 208-273 235-298 (334)
184 cd00094 HX Hemopexin-like repe 77.6 37 0.00081 27.7 12.0 109 94-231 62-178 (194)
185 KOG2048 WD40 repeat protein [G 77.5 74 0.0016 31.1 17.3 186 106-333 46-235 (691)
186 KOG1036 Mitotic spindle checkp 76.8 51 0.0011 28.8 11.7 99 212-333 67-165 (323)
187 KOG0282 mRNA splicing factor [ 76.6 66 0.0014 30.0 13.4 23 309-333 442-464 (503)
188 KOG0292 Vesicle coat complex C 76.5 94 0.002 31.7 15.0 149 169-368 229-380 (1202)
189 KOG0308 Conserved WD40 repeat- 76.1 81 0.0017 30.8 12.8 60 209-273 183-244 (735)
190 KOG0639 Transducin-like enhanc 75.3 49 0.0011 31.1 10.7 104 150-273 477-582 (705)
191 PRK13684 Ycf48-like protein; P 74.7 65 0.0014 29.0 19.6 134 178-342 160-297 (334)
192 KOG0772 Uncharacterized conser 74.5 79 0.0017 29.9 16.9 129 208-365 328-469 (641)
193 KOG2096 WD40 repeat protein [G 74.1 47 0.001 29.3 9.8 100 247-368 192-293 (420)
194 COG3823 Glutamine cyclotransfe 73.8 13 0.00029 30.6 6.1 84 245-348 48-132 (262)
195 KOG0274 Cdc4 and related F-box 73.6 92 0.002 30.3 19.8 182 94-333 261-443 (537)
196 COG0823 TolB Periplasmic compo 72.5 86 0.0019 29.4 14.1 120 50-188 249-369 (425)
197 KOG0266 WD40 repeat-containing 72.4 89 0.0019 29.6 17.0 148 94-273 257-410 (456)
198 KOG1332 Vesicle coat complex C 72.3 60 0.0013 27.6 13.2 73 253-342 222-296 (299)
199 KOG1897 Damage-specific DNA bi 71.6 1.3E+02 0.0028 31.1 17.8 151 150-325 787-938 (1096)
200 smart00564 PQQ beta-propeller 70.9 8.3 0.00018 20.7 3.3 27 309-338 5-31 (33)
201 PLN00033 photosystem II stabil 70.6 91 0.002 28.9 19.7 96 207-326 290-396 (398)
202 KOG0306 WD40-repeat-containing 69.9 1.2E+02 0.0027 30.2 12.8 90 171-273 395-485 (888)
203 KOG4649 PQQ (pyrrolo-quinoline 69.8 72 0.0016 27.4 15.7 98 95-231 24-126 (354)
204 PF01011 PQQ: PQQ enzyme repea 69.7 17 0.00036 20.5 4.5 29 311-342 1-29 (38)
205 KOG2502 Tub family proteins [G 69.3 2.2 4.7E-05 37.7 0.9 38 1-38 44-89 (355)
206 PLN00033 photosystem II stabil 68.4 1E+02 0.0022 28.6 22.4 114 208-342 249-365 (398)
207 COG3823 Glutamine cyclotransfe 68.3 46 0.001 27.6 8.0 105 204-329 51-158 (262)
208 KOG0647 mRNA export protein (c 67.5 87 0.0019 27.5 14.3 133 170-329 94-228 (347)
209 KOG0285 Pleiotropic regulator 67.3 83 0.0018 28.3 9.9 96 216-333 169-267 (460)
210 KOG0646 WD40 repeat protein [G 66.9 1.1E+02 0.0024 28.5 15.7 114 207-334 187-310 (476)
211 PF13570 PQQ_3: PQQ-like domai 65.9 11 0.00024 21.5 3.2 24 90-116 17-40 (40)
212 KOG4378 Nuclear protein COP1 [ 65.9 1.2E+02 0.0026 28.6 15.0 147 150-333 90-241 (673)
213 KOG0265 U5 snRNP-specific prot 65.4 96 0.0021 27.2 10.0 62 209-273 103-164 (338)
214 KOG2919 Guanine nucleotide-bin 63.7 1.1E+02 0.0023 27.3 14.8 98 209-317 263-367 (406)
215 KOG0306 WD40-repeat-containing 62.8 1.7E+02 0.0037 29.3 14.8 100 209-329 119-219 (888)
216 KOG0639 Transducin-like enhanc 62.4 60 0.0013 30.6 8.6 65 250-329 474-539 (705)
217 KOG0294 WD40 repeat-containing 62.4 1.1E+02 0.0024 27.0 11.5 74 204-287 48-124 (362)
218 PF14781 BBS2_N: Ciliary BBSom 61.0 72 0.0016 24.3 7.8 59 150-234 64-133 (136)
219 KOG3881 Uncharacterized conser 60.7 1.3E+02 0.0029 27.3 10.4 149 97-273 163-321 (412)
220 cd00094 HX Hemopexin-like repe 60.6 92 0.002 25.4 14.4 56 208-273 110-174 (194)
221 KOG0271 Notchless-like WD40 re 60.5 25 0.00055 31.7 5.7 82 256-363 129-210 (480)
222 KOG3881 Uncharacterized conser 60.4 1.4E+02 0.0029 27.3 15.7 156 150-333 161-322 (412)
223 KOG4378 Nuclear protein COP1 [ 59.4 1.6E+02 0.0035 27.9 11.2 58 150-229 221-281 (673)
224 KOG0640 mRNA cleavage stimulat 59.1 1.3E+02 0.0028 26.6 12.0 145 169-333 237-385 (430)
225 PF13013 F-box-like_2: F-box-l 58.6 7 0.00015 28.6 1.7 28 3-30 23-50 (109)
226 KOG0272 U4/U6 small nuclear ri 58.5 1.5E+02 0.0033 27.3 13.4 67 248-333 310-377 (459)
227 KOG4283 Transcription-coupled 58.2 1.3E+02 0.0028 26.4 10.3 107 211-333 57-178 (397)
228 PF07433 DUF1513: Protein of u 56.8 1.4E+02 0.0031 26.4 20.8 211 94-342 16-256 (305)
229 KOG0321 WD40 repeat-containing 56.2 62 0.0013 31.4 7.8 102 217-333 71-177 (720)
230 PTZ00334 trans-sialidase; Prov 56.1 1.5E+02 0.0032 30.2 10.7 84 202-287 264-354 (780)
231 PRK01742 tolB translocation pr 56.1 1.8E+02 0.0038 27.3 23.0 103 106-235 227-331 (429)
232 KOG1517 Guanine nucleotide bin 54.8 2.5E+02 0.0053 29.7 11.8 103 211-329 1125-1239(1387)
233 KOG0315 G-protein beta subunit 53.0 1.5E+02 0.0032 25.5 20.6 66 205-273 131-198 (311)
234 PF13088 BNR_2: BNR repeat-lik 52.9 1.5E+02 0.0032 25.5 14.5 114 170-290 134-256 (275)
235 KOG0640 mRNA cleavage stimulat 52.3 1.7E+02 0.0037 25.9 12.7 65 53-121 230-297 (430)
236 PTZ00421 coronin; Provisional 52.2 2.2E+02 0.0049 27.3 17.0 135 106-273 147-291 (493)
237 KOG0278 Serine/threonine kinas 51.5 1.6E+02 0.0034 25.3 11.5 93 217-333 162-256 (334)
238 KOG2111 Uncharacterized conser 50.2 1.8E+02 0.004 25.8 16.5 62 210-273 149-213 (346)
239 KOG0285 Pleiotropic regulator 49.7 2E+02 0.0044 26.0 16.3 113 205-329 325-439 (460)
240 COG3386 Gluconolactonase [Carb 49.7 1.9E+02 0.0041 25.8 20.4 121 169-320 142-277 (307)
241 PF01436 NHL: NHL repeat; Int 49.1 38 0.00083 17.6 3.8 20 307-326 9-28 (28)
242 PF06433 Me-amine-dh_H: Methyl 48.3 2.1E+02 0.0046 25.9 11.4 120 150-291 3-139 (342)
243 PF03088 Str_synth: Strictosid 48.3 80 0.0017 22.1 5.6 18 218-235 35-52 (89)
244 KOG0307 Vesicle coat complex C 48.0 1.9E+02 0.004 30.3 10.0 107 217-345 181-294 (1049)
245 PF03022 MRJP: Major royal jel 48.0 1.9E+02 0.0042 25.4 9.8 82 150-235 12-104 (287)
246 KOG0294 WD40 repeat-containing 47.4 2.1E+02 0.0044 25.5 14.2 28 304-333 212-239 (362)
247 KOG1240 Protein kinase contain 47.1 4E+02 0.0086 28.7 12.5 64 253-329 1162-1225(1431)
248 cd01206 Homer Homer type EVH1 44.8 77 0.0017 23.1 5.1 41 106-156 10-51 (111)
249 KOG0646 WD40 repeat protein [G 44.6 92 0.002 29.0 6.8 69 246-329 85-153 (476)
250 KOG1188 WD40 repeat protein [G 44.4 2.4E+02 0.0052 25.4 9.5 122 216-364 46-176 (376)
251 PTZ00420 coronin; Provisional 43.5 3.3E+02 0.0072 26.8 11.8 23 309-333 177-199 (568)
252 KOG1446 Histone H3 (Lys4) meth 43.4 2.3E+02 0.0051 25.0 24.5 220 63-333 36-264 (311)
253 KOG0272 U4/U6 small nuclear ri 42.1 2.9E+02 0.0062 25.6 10.6 119 206-350 312-431 (459)
254 PRK10115 protease 2; Provision 41.0 4E+02 0.0086 27.0 16.4 122 90-235 275-401 (686)
255 KOG3914 WD repeat protein WDR4 40.4 2.9E+02 0.0064 25.3 11.2 38 304-347 198-235 (390)
256 KOG0283 WD40 repeat-containing 40.0 4.1E+02 0.0088 26.8 11.8 95 106-234 389-487 (712)
257 KOG1274 WD40 repeat protein [G 39.2 4.5E+02 0.0098 27.1 17.8 121 205-342 104-225 (933)
258 KOG1517 Guanine nucleotide bin 38.1 5.2E+02 0.011 27.5 12.0 149 92-273 1175-1334(1387)
259 PF08662 eIF2A: Eukaryotic tra 37.9 2.2E+02 0.0048 23.2 10.4 69 209-287 72-142 (194)
260 KOG0319 WD40-repeat-containing 37.2 2.3E+02 0.0049 28.3 8.4 108 208-336 30-140 (775)
261 COG4880 Secreted protein conta 36.5 3.6E+02 0.0079 25.2 10.5 58 166-230 402-459 (603)
262 KOG0271 Notchless-like WD40 re 36.4 3.4E+02 0.0074 24.9 12.3 141 106-273 136-277 (480)
263 PRK10115 protease 2; Provision 36.4 4.7E+02 0.01 26.5 27.4 120 206-343 277-404 (686)
264 COG5559 Uncharacterized conser 35.6 14 0.0003 23.2 0.2 16 1-16 7-22 (65)
265 COG3940 Predicted beta-xylosid 35.5 2.6E+02 0.0056 23.2 11.4 155 175-350 111-293 (324)
266 PF09910 DUF2139: Uncharacteri 34.9 3.3E+02 0.0071 24.2 18.6 141 170-329 78-230 (339)
267 TIGR03118 PEPCTERM_chp_1 conse 34.7 3.3E+02 0.0072 24.3 11.7 113 208-338 151-284 (336)
268 KOG1539 WD repeat protein [Gen 34.0 5.3E+02 0.012 26.4 17.8 64 216-282 220-283 (910)
269 PF14781 BBS2_N: Ciliary BBSom 32.6 1.9E+02 0.0041 22.2 5.8 60 218-282 71-133 (136)
270 PRK01029 tolB translocation pr 32.1 4.3E+02 0.0094 24.8 24.7 64 63-127 165-231 (428)
271 KOG1275 PAB-dependent poly(A) 31.9 2.9E+02 0.0063 28.6 8.4 130 206-369 144-281 (1118)
272 COG3940 Predicted beta-xylosid 31.1 3.1E+02 0.0067 22.8 10.6 111 202-316 73-209 (324)
273 KOG2919 Guanine nucleotide-bin 31.0 3.9E+02 0.0085 24.0 12.0 45 310-366 308-353 (406)
274 KOG3926 F-box proteins [Amino 30.5 26 0.00056 30.1 1.1 43 2-44 202-245 (332)
275 KOG0265 U5 snRNP-specific prot 30.4 3.9E+02 0.0084 23.7 14.9 143 93-273 57-205 (338)
276 TIGR02276 beta_rpt_yvtn 40-res 30.3 1.1E+02 0.0023 17.1 4.1 22 310-333 3-24 (42)
277 KOG2314 Translation initiation 29.9 5.3E+02 0.011 25.1 9.5 40 250-291 455-495 (698)
278 KOG0321 WD40 repeat-containing 29.8 5.6E+02 0.012 25.3 15.4 19 310-329 283-301 (720)
279 PF07734 FBA_1: F-box associat 29.5 2.8E+02 0.006 21.8 10.9 81 92-188 3-93 (164)
280 cd00260 Sialidase Sialidases o 29.1 4.2E+02 0.0092 23.7 13.3 80 205-286 152-241 (351)
281 KOG4547 WD40 repeat-containing 29.0 5.4E+02 0.012 24.9 10.7 101 211-333 72-174 (541)
282 COG4880 Secreted protein conta 28.4 5E+02 0.011 24.4 12.2 31 247-286 570-600 (603)
283 KOG4499 Ca2+-binding protein R 27.8 3.9E+02 0.0084 22.9 8.8 43 208-254 222-264 (310)
284 PF08954 DUF1900: Domain of un 27.7 1.4E+02 0.003 22.9 4.6 52 310-370 22-73 (136)
285 KOG1332 Vesicle coat complex C 27.7 4E+02 0.0086 22.9 12.3 58 224-286 239-297 (299)
286 KOG0322 G-protein beta subunit 26.9 4.3E+02 0.0092 23.0 7.6 110 207-333 162-283 (323)
287 KOG0643 Translation initiation 26.2 4.4E+02 0.0096 23.0 14.6 147 106-273 73-221 (327)
288 KOG0318 WD40 repeat stress pro 25.9 6.1E+02 0.013 24.5 20.7 69 248-333 450-519 (603)
289 COG0823 TolB Periplasmic compo 25.8 5.7E+02 0.012 24.1 17.6 113 95-235 250-366 (425)
290 PF13919 ASXH: Asx homology do 25.3 25 0.00053 27.0 0.1 21 2-22 44-64 (138)
291 KOG0263 Transcription initiati 25.0 7.2E+02 0.016 25.0 14.1 103 150-273 546-650 (707)
292 PF06881 Elongin_A: RNA polyme 24.1 80 0.0017 23.0 2.6 27 3-29 5-31 (109)
293 cd01207 Ena-Vasp Enabled-VASP- 24.1 3E+02 0.0065 20.3 6.6 18 107-124 9-26 (111)
294 KOG1273 WD40 repeat protein [G 24.0 5.3E+02 0.011 23.1 12.4 26 306-333 160-185 (405)
295 KOG1445 Tumor-specific antigen 23.7 3.9E+02 0.0085 26.4 7.5 101 106-233 741-849 (1012)
296 KOG0283 WD40 repeat-containing 23.6 7.1E+02 0.015 25.2 9.4 94 252-366 421-514 (712)
297 PF07569 Hira: TUP1-like enhan 23.5 4.4E+02 0.0095 22.0 9.5 34 83-119 11-44 (219)
298 KOG0645 WD40 repeat protein [G 23.2 5.1E+02 0.011 22.6 18.7 164 170-363 37-205 (312)
299 PF07569 Hira: TUP1-like enhan 23.0 4.5E+02 0.0097 22.0 7.2 28 310-342 77-104 (219)
300 KOG1036 Mitotic spindle checkp 23.0 5.4E+02 0.012 22.8 14.3 140 92-273 23-164 (323)
301 KOG0299 U3 snoRNP-associated p 22.3 6.6E+02 0.014 23.7 14.2 145 150-336 214-361 (479)
302 KOG3545 Olfactomedin and relat 22.2 5E+02 0.011 22.3 11.8 146 87-258 70-235 (249)
303 KOG0319 WD40-repeat-containing 21.6 8.4E+02 0.018 24.6 13.8 198 92-348 28-235 (775)
304 COG3391 Uncharacterized conser 20.2 6.8E+02 0.015 23.0 11.6 108 208-333 85-192 (381)
305 PF08662 eIF2A: Eukaryotic tra 20.0 4.8E+02 0.01 21.2 10.5 60 252-329 71-133 (194)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.4e-36 Score=282.27 Aligned_cols=255 Identities=20% Similarity=0.276 Sum_probs=225.1
Q ss_pred CceEEEEEecCC----CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC----CceEEEEEcCcccceec
Q 046684 50 PAWFLALPTRNR----GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS----TILQLVLCNPFTRQFRY 121 (373)
Q Consensus 50 ~~~l~~~~~~~~----~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~----~~~~~~v~np~t~~w~~ 121 (373)
...++++++... ...+..||+.++.|..++.++.+|..+++++.+|.||++||.+ ..+.+++|||.+++|+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 355777777654 3778889999999999999889999999999999999999986 34679999999999999
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccC
Q 046684 122 LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTP 201 (373)
Q Consensus 122 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~ 201 (373)
+|+|..+|..+++++++ ++||++||.+ +......+|.||+.+++|..+++|+ ..+..
T Consensus 364 ~a~M~~~R~~~~v~~l~-----------g~iYavGG~d-----g~~~l~svE~YDp~~~~W~~va~m~-------~~r~~ 420 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLD-----------GKLYAVGGFD-----GEKSLNSVECYDPVTNKWTPVAPML-------TRRSG 420 (571)
T ss_pred cCCccCccccceeEEEC-----------CEEEEEeccc-----cccccccEEEecCCCCcccccCCCC-------cceee
Confidence 99999999999999998 9999999998 8888899999999999999999994 47888
Q ss_pred CceEEECCEEEEEEcC-----CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc----eEEEEee
Q 046684 202 NESVCTRGMLYWITSA-----RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD----ACVWELS 272 (373)
Q Consensus 202 ~~~~~~~g~ly~~gg~-----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~----~~i~~~~ 272 (373)
+++++++|+||++||. ...++.+|||.+++|+.+ .+|+..|.++++++++|+||++||.++.. ++.|++.
T Consensus 421 ~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~-~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 421 HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI-APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec-CCcccccccceEEEECCEEEEECCccCCCccceEEEEcCC
Confidence 9999999999999963 457899999999999999 89999999999999999999999988732 6778876
Q ss_pred cCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEecccccCC
Q 046684 273 EGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVGGCCLTG 347 (373)
Q Consensus 273 ~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~~~~~~~ 347 (373)
. ++|+.+..|+.++. ...++..+++||++||.. ..+.+||++ ++ +|+.+.. +...
T Consensus 500 ~----~~W~~v~~m~~~rs-----------~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~--~d--~W~~~~~-~~~~ 559 (571)
T KOG4441|consen 500 T----NQWTMVAPMTSPRS-----------AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE--TD--TWTEVTE-PESG 559 (571)
T ss_pred C----CceeEcccCccccc-----------cccEEEECCEEEEEecccCccccceeEEcCCC--CC--ceeeCCC-cccc
Confidence 5 99999988888775 488899999999999754 469999999 99 9998877 4433
Q ss_pred C
Q 046684 348 G 348 (373)
Q Consensus 348 ~ 348 (373)
+
T Consensus 560 ~ 560 (571)
T KOG4441|consen 560 R 560 (571)
T ss_pred c
Confidence 3
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.3e-35 Score=276.32 Aligned_cols=236 Identities=16% Similarity=0.213 Sum_probs=202.7
Q ss_pred eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC----CceEEEEEcCcccceeccCCCCCCCCCCeEEEEE
Q 046684 63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS----TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVM 138 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~----~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~ 138 (373)
..++.||+.+++|..++.++.++..+++++.+|.||++||.. ..+.+++|||.+++|..+|+|+.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 356789999999999988888888888999999999999963 2457899999999999999999999999999888
Q ss_pred cCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC
Q 046684 139 EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR 218 (373)
Q Consensus 139 ~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~ 218 (373)
++||++||.+ +......+++||+.+++|+.+++|| .++..++++.++|+||++||..
T Consensus 352 -----------g~IYviGG~~-----~~~~~~sve~Ydp~~~~W~~~~~mp-------~~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 352 -----------DTIYAIGGQN-----GTNVERTIECYTMGDDKWKMLPDMP-------IALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred -----------CEEEEECCcC-----CCCCCceEEEEECCCCeEEECCCCC-------cccccccEEEECCEEEEEeCCC
Confidence 9999999986 4455678999999999999999995 4566677889999999999743
Q ss_pred ----------------------ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc-----eEEEEe
Q 046684 219 ----------------------AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD-----ACVWEL 271 (373)
Q Consensus 219 ----------------------~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~-----~~i~~~ 271 (373)
.+.+.+|||++++|+.+ .+++..+..+++++++|+||++||..+.. +++|++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp 487 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT 487 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecC
Confidence 35799999999999999 79999998899999999999999975321 456666
Q ss_pred ecCCCC-CCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCc--cEEEEEccccCCcccEEEec
Q 046684 272 SEGGDD-DIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGL--GMIIWREDEDKRKWEWVWVG 341 (373)
Q Consensus 272 ~~~~~~-~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~yd~~~~~~~~~W~~~~ 341 (373)
++ ++|+.+..||.++. ...+++.+|+||++||..+ .+.+||++ ++ +|+.+.
T Consensus 488 ----~~~~~W~~~~~m~~~r~-----------~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~--~~--~W~~~~ 541 (557)
T PHA02713 488 ----NTYNGWELITTTESRLS-----------ALHTILHDNTIMMLHCYESYMLQDTFNVY--TY--EWNHIC 541 (557)
T ss_pred ----CCCCCeeEccccCcccc-----------cceeEEECCEEEEEeeecceeehhhcCcc--cc--cccchh
Confidence 55 69999999998775 3788889999999998765 68999999 99 999664
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=239.17 Aligned_cols=227 Identities=18% Similarity=0.268 Sum_probs=192.9
Q ss_pred cccchhccccccchhhccC---CCCceEEEEEecCC----CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEee
Q 046684 29 CSHWHTCAKLYHLHSVSQH---RRPAWFLALPTRNR----GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRP 101 (373)
Q Consensus 29 ck~W~~li~~~~f~~~~~~---~~~~~l~~~~~~~~----~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~g 101 (373)
.+.|..+..-|.=+ .+. .....++++|+.+. .+.++.|||..++|..++++..+|..+++++++|.||++|
T Consensus 310 ~~~w~~~a~m~~~r--~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavG 387 (571)
T KOG4441|consen 310 TNEWSSLAPMPSPR--CRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVG 387 (571)
T ss_pred cCcEeecCCCCccc--ccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEe
Confidence 34566666555211 111 23445777777662 3789999999999999999999999999999999999999
Q ss_pred CCCC---ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc-ccceEEEEEC
Q 046684 102 INST---ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT-YESMVEMYDS 177 (373)
Q Consensus 102 g~~~---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~-~~~~~~~yd~ 177 (373)
|.++ ...+..|||.|++|..+++|+..|..+++++++ ++||++||.+ +.. ....+++||+
T Consensus 388 G~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~-----------g~iYi~GG~~-----~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 388 GFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG-----------GKLYIIGGGD-----GSSNCLNSVECYDP 451 (571)
T ss_pred ccccccccccEEEecCCCCcccccCCCCcceeeeEEEEEC-----------CEEEEEcCcC-----CCccccceEEEEcC
Confidence 9753 457999999999999999999999999999998 9999999987 544 7889999999
Q ss_pred CCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC----ceEEEEEECCCCcEEecccCCCCCCCceeEEEECC
Q 046684 178 RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR----AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQ 253 (373)
Q Consensus 178 ~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g 253 (373)
.+++|+.+++| ...|.++.+++++|+||++||.. ...+.+|||++++|+.+ .+++..+...++++.++
T Consensus 452 ~t~~W~~~~~M-------~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 452 ETNTWTLIAPM-------NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGG 523 (571)
T ss_pred CCCceeecCCc-------ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEECC
Confidence 99999999999 56778888999999999999744 56699999999999999 89999999999999999
Q ss_pred EEEEEEeecCCc----eEEEEeecCCCCCCeEEEEe
Q 046684 254 KLTLIGGTCGGD----ACVWELSEGGDDDIWCLIEK 285 (373)
Q Consensus 254 ~l~~~gg~~~~~----~~i~~~~~~~~~~~W~~v~~ 285 (373)
+||++||.++.. ++.|+++. ++|+....
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~----d~W~~~~~ 555 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPET----DTWTEVTE 555 (571)
T ss_pred EEEEEecccCccccceeEEcCCCC----CceeeCCC
Confidence 999999987664 88887755 99999988
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=5.4e-29 Score=237.88 Aligned_cols=238 Identities=14% Similarity=0.158 Sum_probs=192.6
Q ss_pred eEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEc
Q 046684 64 CCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVME 139 (373)
Q Consensus 64 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~ 139 (373)
.+..|++..++|..++..+. +..+++++.++.||++||... .++++.||+.+++|..+|+++.+|..+++++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~- 342 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN- 342 (534)
T ss_pred eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEEC-
Confidence 34457888888988754432 334568889999999999632 247899999999999999999999999888887
Q ss_pred CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC-
Q 046684 140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR- 218 (373)
Q Consensus 140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~- 218 (373)
++||++||.. .......+++||+.+++|+.++++| .++..++++.++|++|++||..
T Consensus 343 ----------~~lyv~GG~~-----~~~~~~~v~~yd~~~~~W~~~~~lp-------~~r~~~~~~~~~~~iYv~GG~~~ 400 (534)
T PHA03098 343 ----------NRIYVIGGIY-----NSISLNTVESWKPGESKWREEPPLI-------FPRYNPCVVNVNNLIYVIGGISK 400 (534)
T ss_pred ----------CEEEEEeCCC-----CCEecceEEEEcCCCCceeeCCCcC-------cCCccceEEEECCEEEEECCcCC
Confidence 9999999986 5556778999999999999999885 4567778889999999998732
Q ss_pred ----ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCc-------eEEEEeecCCCCCCeEEEEeec
Q 046684 219 ----AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGD-------ACVWELSEGGDDDIWCLIEKVP 287 (373)
Q Consensus 219 ----~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~-------~~i~~~~~~~~~~~W~~v~~~p 287 (373)
.+.+..||+.+++|+.+ .++|.++.++.++..+++||++||..... +.+|++ .+++|+.+..++
T Consensus 401 ~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~----~~~~W~~~~~~~ 475 (534)
T PHA03098 401 NDELLKTVECFSLNTNKWSKG-SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNP----VTNKWTELSSLN 475 (534)
T ss_pred CCcccceEEEEeCCCCeeeec-CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecC----CCCceeeCCCCC
Confidence 36799999999999999 78888888888899999999999965321 445555 559999998887
Q ss_pred hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEeccccc
Q 046684 288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVGGCCL 345 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~~~~~ 345 (373)
.++.. ..++..+++||++||.. +.+.+||++ ++ +|+.++..|-
T Consensus 476 ~~r~~-----------~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~--~W~~~~~~p~ 523 (534)
T PHA03098 476 FPRIN-----------ASLCIFNNKIYVVGGDKYEYYINEIEVYDDK--TN--TWTLFCKFPK 523 (534)
T ss_pred ccccc-----------ceEEEECCEEEEEcCCcCCcccceeEEEeCC--CC--EEEecCCCcc
Confidence 66542 45566699999999753 579999999 99 9998877553
No 5
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=1.7e-28 Score=220.95 Aligned_cols=235 Identities=14% Similarity=0.149 Sum_probs=180.0
Q ss_pred CCCCCccccCC----CCCCCCceeEEeeCcEEEEeeCCCC-----ceEEEEEcCcccceeccCCCC-CCCC---CCeEEE
Q 046684 70 PVSDKWHVLSL----DFLPYPVRPVSSIGSFLLLRPINST-----ILQLVLCNPFTRQFRYLPLLN-VSRT---NPAVGI 136 (373)
Q Consensus 70 ~~~~~w~~~~~----~~~~~~~~~~~~~~g~l~~~gg~~~-----~~~~~v~np~t~~w~~lp~~~-~~~~---~~~~~~ 136 (373)
+....|.+++. .+.+|..+++++.++.||++||... .+++++||+.+++|+.++++. .++. .+++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35667988854 5678888989999999999999632 247999999999999988764 3332 455666
Q ss_pred EEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEc
Q 046684 137 VMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS 216 (373)
Q Consensus 137 ~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg 216 (373)
++ ++||++||.. ......++++||+++++|+.++.++.. ..+..|..+++++.+++||++||
T Consensus 84 ~~-----------~~iyv~GG~~-----~~~~~~~v~~yd~~t~~W~~~~~~~~~--~~p~~R~~~~~~~~~~~iyv~GG 145 (341)
T PLN02153 84 VG-----------TKLYIFGGRD-----EKREFSDFYSYDTVKNEWTFLTKLDEE--GGPEARTFHSMASDENHVYVFGG 145 (341)
T ss_pred EC-----------CEEEEECCCC-----CCCccCcEEEEECCCCEEEEeccCCCC--CCCCCceeeEEEEECCEEEEECC
Confidence 66 9999999986 445567899999999999998876321 01245667788899999999987
Q ss_pred CC----------ceEEEEEECCCCcEEecccCC---CCCCCceeEEEECCEEEEEEeecC------------CceEEEEe
Q 046684 217 AR----------AYSVIGFDIESNTWRELSAPM---ADRLEFATLVSRNQKLTLIGGTCG------------GDACVWEL 271 (373)
Q Consensus 217 ~~----------~~~i~~yd~~~~~w~~~~~~~---p~~~~~~~~~~~~g~l~~~gg~~~------------~~~~i~~~ 271 (373)
.. ...+.+||+++++|..+ .++ +..+.++.+++++++||+++|... ..+++|++
T Consensus 146 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~l-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~ 224 (341)
T PLN02153 146 VSKGGLMKTPERFRTIEAYNIADGKWVQL-PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP 224 (341)
T ss_pred ccCCCccCCCcccceEEEEECCCCeEeeC-CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence 43 24789999999999998 343 356777888899999999988531 12566666
Q ss_pred ecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--------------ccEEEEEccccCCc
Q 046684 272 SEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--------------LGMIIWREDEDKRK 334 (373)
Q Consensus 272 ~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~yd~~~~~~~ 334 (373)
+ +++|+++.. +|.++. .+.++..+++||++||.. +.+++||++ ++
T Consensus 225 ~----~~~W~~~~~~g~~P~~r~-----------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~--~~- 286 (341)
T PLN02153 225 A----SGKWTEVETTGAKPSARS-----------VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE--TL- 286 (341)
T ss_pred C----CCcEEeccccCCCCCCcc-----------eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC--cc-
Confidence 4 499999875 344442 367788899999999852 379999999 99
Q ss_pred ccEEEecc
Q 046684 335 WEWVWVGG 342 (373)
Q Consensus 335 ~~W~~~~~ 342 (373)
+|+.+..
T Consensus 287 -~W~~~~~ 293 (341)
T PLN02153 287 -VWEKLGE 293 (341)
T ss_pred -EEEeccC
Confidence 9998864
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=5.4e-29 Score=235.97 Aligned_cols=214 Identities=11% Similarity=0.105 Sum_probs=176.4
Q ss_pred CceEEEEEecC----CCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCC---ceEEEEEcCcccceecc
Q 046684 50 PAWFLALPTRN----RGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINST---ILQLVLCNPFTRQFRYL 122 (373)
Q Consensus 50 ~~~l~~~~~~~----~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~---~~~~~v~np~t~~w~~l 122 (373)
...++++|+.. ....++.|||.++.|..+++++.+|..+++++++|.||++||... ...+.+|||.+++|..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 34566666643 126788999999999999999899999999999999999999742 35799999999999999
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCC-------------CCCcccceEEEEECCCCceeeecCCC
Q 046684 123 PLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPR-------------GGATYESMVEMYDSRHDAWQIIGSMP 189 (373)
Q Consensus 123 p~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~-------------~~~~~~~~~~~yd~~~~~W~~~~~~p 189 (373)
++||.++..+++++++ ++||++||...... ........+++||+++++|+.+++|+
T Consensus 383 ~~mp~~r~~~~~~~~~-----------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~ 451 (557)
T PHA02713 383 PDMPIALSSYGMCVLD-----------QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW 451 (557)
T ss_pred CCCCcccccccEEEEC-----------CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence 9999999998888887 99999999751100 00112567999999999999999994
Q ss_pred ccccccceeccCCceEEECCEEEEEEcCC-----ceEEEEEECCC-CcEEecccCCCCCCCceeEEEECCEEEEEEeecC
Q 046684 190 VEFAVRLTVWTPNESVCTRGMLYWITSAR-----AYSVIGFDIES-NTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG 263 (373)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~~i~~yd~~~-~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~ 263 (373)
..+..+++++++|+||++||.. ...+.+|||++ ++|+.+ .++|..+...++++++|+||++||.++
T Consensus 452 -------~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~-~~m~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 452 -------TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI-TTTESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred -------cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-cccCcccccceeEEECCEEEEEeeecc
Confidence 4567778899999999998743 24578999999 899999 799999999999999999999999876
Q ss_pred Cc-eEEEEeecCCCCCCeEEEEee
Q 046684 264 GD-ACVWELSEGGDDDIWCLIEKV 286 (373)
Q Consensus 264 ~~-~~i~~~~~~~~~~~W~~v~~~ 286 (373)
.. +++|++.+ ++|+.+...
T Consensus 524 ~~~~e~yd~~~----~~W~~~~~~ 543 (557)
T PHA02713 524 YMLQDTFNVYT----YEWNHICHQ 543 (557)
T ss_pred eeehhhcCccc----ccccchhhh
Confidence 33 67888865 999988654
No 7
>PLN02193 nitrile-specifier protein
Probab=99.96 E-value=1.7e-27 Score=222.12 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=184.9
Q ss_pred EEEEeCCC----CCccccCC---CCCCCCceeEEeeCcEEEEeeCCCC-----ceEEEEEcCcccceeccCCC---CC-C
Q 046684 65 CYVHNPVS----DKWHVLSL---DFLPYPVRPVSSIGSFLLLRPINST-----ILQLVLCNPFTRQFRYLPLL---NV-S 128 (373)
Q Consensus 65 ~~~~d~~~----~~w~~~~~---~~~~~~~~~~~~~~g~l~~~gg~~~-----~~~~~v~np~t~~w~~lp~~---~~-~ 128 (373)
++.+++.+ ++|.+++. .+.+|..++++..++.||++||... .+++++||+.+++|..++++ |. .
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS 218 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence 44447644 79998854 4678999999999999999999631 24699999999999988753 32 2
Q ss_pred CCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEEC
Q 046684 129 RTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTR 208 (373)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~ 208 (373)
+..+++++++ ++||++||.. ......++++||+.+++|+.+.+++.. +.+|..++++..+
T Consensus 219 ~~~~~~v~~~-----------~~lYvfGG~~-----~~~~~ndv~~yD~~t~~W~~l~~~~~~----P~~R~~h~~~~~~ 278 (470)
T PLN02193 219 CLGVRMVSIG-----------STLYVFGGRD-----ASRQYNGFYSFDTTTNEWKLLTPVEEG----PTPRSFHSMAADE 278 (470)
T ss_pred ccceEEEEEC-----------CEEEEECCCC-----CCCCCccEEEEECCCCEEEEcCcCCCC----CCCccceEEEEEC
Confidence 3455666666 9999999986 445567899999999999999877321 3467778888899
Q ss_pred CEEEEEEcC----CceEEEEEECCCCcEEecccC--CCCCCCceeEEEECCEEEEEEeecCC---ceEEEEeecCCCCCC
Q 046684 209 GMLYWITSA----RAYSVIGFDIESNTWRELSAP--MADRLEFATLVSRNQKLTLIGGTCGG---DACVWELSEGGDDDI 279 (373)
Q Consensus 209 g~ly~~gg~----~~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~~~~~~g~l~~~gg~~~~---~~~i~~~~~~~~~~~ 279 (373)
++||++||. ....+.+||+.+++|+.++.+ ++..+..+.+++++++||+++|..+. .+.+|++ ++++
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~----~t~~ 354 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDP----VQDK 354 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEEC----CCCE
Confidence 999999864 346789999999999988432 45567778888999999999986542 2555555 4599
Q ss_pred eEEEEee---chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--------------ccEEEEEccccCCcccEEEecc
Q 046684 280 WCLIEKV---PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--------------LGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 280 W~~v~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
|+++..+ |.++. .+.++..+++||++||.. +.+++||++ ++ +|+.++.
T Consensus 355 W~~~~~~g~~P~~R~-----------~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~--t~--~W~~~~~ 419 (470)
T PLN02193 355 WTQVETFGVRPSERS-----------VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE--TL--QWERLDK 419 (470)
T ss_pred EEEeccCCCCCCCcc-----------eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC--cC--EEEEccc
Confidence 9998765 44432 467778899999999852 368999999 99 9998875
Q ss_pred cc
Q 046684 343 CC 344 (373)
Q Consensus 343 ~~ 344 (373)
.+
T Consensus 420 ~~ 421 (470)
T PLN02193 420 FG 421 (470)
T ss_pred CC
Confidence 43
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=1.5e-27 Score=215.61 Aligned_cols=239 Identities=15% Similarity=0.208 Sum_probs=175.1
Q ss_pred CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcC--cccceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCceEEEEE
Q 046684 79 SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNP--FTRQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNFRIYVA 155 (373)
Q Consensus 79 ~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np--~t~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~kl~~~ 155 (373)
+.++.++...++++.++.||++||.. .+.++++|+ .+++|+.+++|| .+|..+++++++ ++||++
T Consensus 2 ~~lp~~~~~~~~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~-----------~~iYv~ 69 (346)
T TIGR03547 2 PDLPVGFKNGTGAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID-----------GKLYVF 69 (346)
T ss_pred CCCCccccCceEEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-----------CEEEEE
Confidence 34455666666778899999999963 357889985 678999999998 578888888887 999999
Q ss_pred eccCCCCC-CCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCEEEEEEcCC---------------
Q 046684 156 GGMSDEPR-GGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGMLYWITSAR--------------- 218 (373)
Q Consensus 156 gg~~~~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~--------------- 218 (373)
||...... ........+++||+.+++|+.++... +..+..+.++ .++|+||++||..
T Consensus 70 GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~------p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 143 (346)
T TIGR03547 70 GGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS------PVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAAD 143 (346)
T ss_pred eCCCCCCCCCcceecccEEEEECCCCEEecCCCCC------CCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcC
Confidence 99751100 01123568999999999999987321 2233444444 6899999998743
Q ss_pred -----------------------ceEEEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCc-----eEEE
Q 046684 219 -----------------------AYSVIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGD-----ACVW 269 (373)
Q Consensus 219 -----------------------~~~i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~-----~~i~ 269 (373)
.+.+.+||+.+++|+.+ .++|. .+..+.+++++++||++||..... +.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 222 (346)
T TIGR03547 144 KDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQY 222 (346)
T ss_pred ccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC-ccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEE
Confidence 25799999999999999 68875 567778889999999999975322 4456
Q ss_pred EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----------------------ccEEEEE
Q 046684 270 ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG----------------------LGMIIWR 327 (373)
Q Consensus 270 ~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~yd 327 (373)
+++. ++++|+.+..||.++..... .+..+.++..+++||++||.. ..+.+||
T Consensus 223 ~~~~--~~~~W~~~~~m~~~r~~~~~----~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 296 (346)
T TIGR03547 223 LFTG--GKLEWNKLPPLPPPKSSSQE----GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA 296 (346)
T ss_pred EecC--CCceeeecCCCCCCCCCccc----cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE
Confidence 6655 56799999999876421000 001234667899999999853 1478999
Q ss_pred ccccCCcccEEEecccccC
Q 046684 328 EDEDKRKWEWVWVGGCCLT 346 (373)
Q Consensus 328 ~~~~~~~~~W~~~~~~~~~ 346 (373)
++ ++ +|+.++..|.+
T Consensus 297 ~~--~~--~W~~~~~lp~~ 311 (346)
T TIGR03547 297 LD--NG--KWSKVGKLPQG 311 (346)
T ss_pred ec--CC--cccccCCCCCC
Confidence 99 99 99988766543
No 9
>PLN02153 epithiospecifier protein
Probab=99.96 E-value=2.1e-27 Score=213.91 Aligned_cols=253 Identities=12% Similarity=0.157 Sum_probs=182.5
Q ss_pred CceEEEEEecCC-----CeeEEEEeCCCCCccccCCC-CCCCC---ceeEEeeCcEEEEeeCCCC---ceEEEEEcCccc
Q 046684 50 PAWFLALPTRNR-----GLCCYVHNPVSDKWHVLSLD-FLPYP---VRPVSSIGSFLLLRPINST---ILQLVLCNPFTR 117 (373)
Q Consensus 50 ~~~l~~~~~~~~-----~~~~~~~d~~~~~w~~~~~~-~~~~~---~~~~~~~~g~l~~~gg~~~---~~~~~v~np~t~ 117 (373)
...++++++... ...++.||+.+++|..++.+ ..++. .++++++++.||++||... .+++++|||.++
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 345777766421 25788999999999988543 23442 5678899999999999632 357999999999
Q ss_pred ceeccCCC-----CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCC-CCCcccceEEEEECCCCceeeecCCCcc
Q 046684 118 QFRYLPLL-----NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPR-GGATYESMVEMYDSRHDAWQIIGSMPVE 191 (373)
Q Consensus 118 ~w~~lp~~-----~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 191 (373)
+|+.++++ |.+|..+++++.+ ++||++||...... .......++++||+++++|+.++.++..
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~-----------~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~ 180 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDE-----------NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN 180 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEEC-----------CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence 99999877 6778888887776 99999999752100 0011346799999999999998876321
Q ss_pred ccccceeccCCceEEECCEEEEEEcCC------------ceEEEEEECCCCcEEeccc--CCCCCCCceeEEEECCEEEE
Q 046684 192 FAVRLTVWTPNESVCTRGMLYWITSAR------------AYSVIGFDIESNTWRELSA--PMADRLEFATLVSRNQKLTL 257 (373)
Q Consensus 192 ~~~~~~~~~~~~~~~~~g~ly~~gg~~------------~~~i~~yd~~~~~w~~~~~--~~p~~~~~~~~~~~~g~l~~ 257 (373)
+..+..+.+++++|++|++||.. .+.+.+||+++++|+.+.. .+|.++..+.+++++++||+
T Consensus 181 ----~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv 256 (341)
T PLN02153 181 ----FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII 256 (341)
T ss_pred ----CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE
Confidence 35677778888999999997632 3679999999999999832 25677888888999999999
Q ss_pred EEeecCC-----------ceEEEEeecCCCCCCeEEEEe-----echhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCC
Q 046684 258 IGGTCGG-----------DACVWELSEGGDDDIWCLIEK-----VPIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVG 320 (373)
Q Consensus 258 ~gg~~~~-----------~~~i~~~~~~~~~~~W~~v~~-----~p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 320 (373)
+||.... ..++|.++. ++++|+.+.. +|..... ...+... ++.||++||..
T Consensus 257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~~~~~~~~pr~~~~----------~~~~~v~~~~~~~~~gG~~ 324 (341)
T PLN02153 257 FGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLGECGEPAMPRGWTA----------YTTATVYGKNGLLMHGGKL 324 (341)
T ss_pred ECcccCCccccccccccccccEEEEEc--CccEEEeccCCCCCCCCCcccc----------ccccccCCcceEEEEcCcC
Confidence 9996311 125677776 7799999864 3332211 1223333 46899999873
Q ss_pred ------ccEEEEEcc
Q 046684 321 ------LGMIIWRED 329 (373)
Q Consensus 321 ------~~~~~yd~~ 329 (373)
.+++.|+..
T Consensus 325 ~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 325 PTNERTDDLYFYAVN 339 (341)
T ss_pred CCCccccceEEEecc
Confidence 356777654
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=7.4e-28 Score=225.18 Aligned_cols=201 Identities=14% Similarity=0.148 Sum_probs=170.7
Q ss_pred EEeeCcEEEEeeCCC---CceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684 90 VSSIGSFLLLRPINS---TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA 166 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~---~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~ 166 (373)
.+..++.||++||.. ....++.|||.+++|..+|+|+.+|..+++++++ ++||++||.+ ..
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~-----------~~iYviGG~~-----~~ 330 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPAN-----------NKLYVVGGLP-----NP 330 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEEC-----------CEEEEECCcC-----CC
Confidence 445899999999963 2357899999999999999999999888888877 9999999975 21
Q ss_pred cccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC--ceEEEEEECCCCcEEecccCCCCCCC
Q 046684 167 TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR--AYSVIGFDIESNTWRELSAPMADRLE 244 (373)
Q Consensus 167 ~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--~~~i~~yd~~~~~w~~~~~~~p~~~~ 244 (373)
..++.||+.+++|+.++++| .++..++++.++|+||++||.. ...+.+|||++++|+.+ .+++.++.
T Consensus 331 ---~sve~ydp~~n~W~~~~~l~-------~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~ 399 (480)
T PHA02790 331 ---TSVERWFHGDAAWVNMPSLL-------KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHY 399 (480)
T ss_pred ---CceEEEECCCCeEEECCCCC-------CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccc
Confidence 45899999999999999995 4566778899999999998743 35688999999999999 78988888
Q ss_pred ceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----
Q 046684 245 FATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG---- 320 (373)
Q Consensus 245 ~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---- 320 (373)
.+.+++++|+||++||. .++|+++. ++|+.+..|+.++. ...++..+|+||++||..
T Consensus 400 ~~~~~~~~~~IYv~GG~----~e~ydp~~----~~W~~~~~m~~~r~-----------~~~~~v~~~~IYviGG~~~~~~ 460 (480)
T PHA02790 400 KSCALVFGRRLFLVGRN----AEFYCESS----NTWTLIDDPIYPRD-----------NPELIIVDNKLLLIGGFYRGSY 460 (480)
T ss_pred cceEEEECCEEEEECCc----eEEecCCC----CcEeEcCCCCCCcc-----------ccEEEEECCEEEEECCcCCCcc
Confidence 88889999999999974 47888865 99999999987765 377888999999999853
Q ss_pred -ccEEEEEccccCCcccEEEe
Q 046684 321 -LGMIIWREDEDKRKWEWVWV 340 (373)
Q Consensus 321 -~~~~~yd~~~~~~~~~W~~~ 340 (373)
..+.+||++ ++ +|+..
T Consensus 461 ~~~ve~Yd~~--~~--~W~~~ 477 (480)
T PHA02790 461 IDTIEVYNNR--TY--SWNIW 477 (480)
T ss_pred cceEEEEECC--CC--eEEec
Confidence 469999999 99 99854
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=223.53 Aligned_cols=200 Identities=20% Similarity=0.160 Sum_probs=168.9
Q ss_pred CceEEEEEecCC---CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCC
Q 046684 50 PAWFLALPTRNR---GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN 126 (373)
Q Consensus 50 ~~~l~~~~~~~~---~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~ 126 (373)
...++++|+.+. ...++.|||.+++|..+++++.+|..+++++.||.||++||......+..|||.+++|..+|+|+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345666666432 25788899999999999988889988888999999999999755567899999999999999999
Q ss_pred CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684 127 VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC 206 (373)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~ 206 (373)
.+|..+++++++ ++||++||.. +. ...+++||+++++|+.++++| .++..+.++.
T Consensus 351 ~~r~~~~~~~~~-----------g~IYviGG~~-----~~--~~~ve~ydp~~~~W~~~~~m~-------~~r~~~~~~~ 405 (480)
T PHA02790 351 KPRCNPAVASIN-----------NVIYVIGGHS-----ET--DTTTEYLLPNHDQWQFGPSTY-------YPHYKSCALV 405 (480)
T ss_pred CCCcccEEEEEC-----------CEEEEecCcC-----CC--CccEEEEeCCCCEEEeCCCCC-------CccccceEEE
Confidence 999988888887 9999999975 22 256899999999999999984 4556677889
Q ss_pred ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC----ceEEEEeecCCCCCCeEE
Q 046684 207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG----DACVWELSEGGDDDIWCL 282 (373)
Q Consensus 207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~----~~~i~~~~~~~~~~~W~~ 282 (373)
++|+||++|| .+.+||+++++|+.+ .+++.++..+++++++|+||++||..+. .+++|+++. ++|+.
T Consensus 406 ~~~~IYv~GG----~~e~ydp~~~~W~~~-~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~----~~W~~ 476 (480)
T PHA02790 406 FGRRLFLVGR----NAEFYCESSNTWTLI-DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT----YSWNI 476 (480)
T ss_pred ECCEEEEECC----ceEEecCCCCcEeEc-CCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC----CeEEe
Confidence 9999999975 367899999999999 7899899999999999999999997532 277888865 99976
Q ss_pred E
Q 046684 283 I 283 (373)
Q Consensus 283 v 283 (373)
.
T Consensus 477 ~ 477 (480)
T PHA02790 477 W 477 (480)
T ss_pred c
Confidence 4
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=5.1e-27 Score=212.16 Aligned_cols=236 Identities=16% Similarity=0.125 Sum_probs=173.3
Q ss_pred ceEEEEEecCCCeeEEEEeC--CCCCccccCCCC-CCCCceeEEeeCcEEEEeeCCCC---------ceEEEEEcCcccc
Q 046684 51 AWFLALPTRNRGLCCYVHNP--VSDKWHVLSLDF-LPYPVRPVSSIGSFLLLRPINST---------ILQLVLCNPFTRQ 118 (373)
Q Consensus 51 ~~l~~~~~~~~~~~~~~~d~--~~~~w~~~~~~~-~~~~~~~~~~~~g~l~~~gg~~~---------~~~~~v~np~t~~ 118 (373)
..++++++... ..++.||+ .+++|..++.++ .+|..+++++.++.||++||... ..++++|||.+++
T Consensus 18 ~~vyv~GG~~~-~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 18 DKVYVGLGSAG-TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CEEEEEccccC-CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 34556555433 56778885 578999998776 57888889999999999999632 3578999999999
Q ss_pred eeccC-CCCCCCCCCeEE-EEEcCCCCCCCCCceEEEEEeccCCCCC----------C-------------------CCc
Q 046684 119 FRYLP-LLNVSRTNPAVG-IVMEGPAQHGPFPNFRIYVAGGMSDEPR----------G-------------------GAT 167 (373)
Q Consensus 119 w~~lp-~~~~~~~~~~~~-~~~~~~~~~~~~~~~kl~~~gg~~~~~~----------~-------------------~~~ 167 (373)
|++++ +++..+..++++ +++ ++||++||...... . ...
T Consensus 97 W~~~~~~~p~~~~~~~~~~~~~-----------g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 97 WQKLDTRSPVGLLGASGFSLHN-----------GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred EecCCCCCCCcccceeEEEEeC-----------CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 99997 455555555444 455 99999999751000 0 000
Q ss_pred ccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC-----ceEEEEEE--CCCCcEEecccCCC
Q 046684 168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR-----AYSVIGFD--IESNTWRELSAPMA 240 (373)
Q Consensus 168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~~i~~yd--~~~~~w~~~~~~~p 240 (373)
....+++||+.+++|+.++++| ...+..++++.++|+||++||.. ...+..|| +++++|..+ .++|
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p------~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~-~~m~ 238 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENP------FLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL-PPLP 238 (346)
T ss_pred ccceEEEEECCCCceeECccCC------CCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec-CCCC
Confidence 1367999999999999999885 23456677888999999999742 23355555 577799999 6776
Q ss_pred CCC-------CceeEEEECCEEEEEEeecC---------------------CceEEEEeecCCCCCCeEEEEeechhhhh
Q 046684 241 DRL-------EFATLVSRNQKLTLIGGTCG---------------------GDACVWELSEGGDDDIWCLIEKVPIEMGM 292 (373)
Q Consensus 241 ~~~-------~~~~~~~~~g~l~~~gg~~~---------------------~~~~i~~~~~~~~~~~W~~v~~~p~~~~~ 292 (373)
.++ ..+.+++++|+||++||... ..+++|+++. ++|+.+..||.++.
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~----~~W~~~~~lp~~~~- 313 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN----GKWSKVGKLPQGLA- 313 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC----CcccccCCCCCCce-
Confidence 644 23346788999999999641 1267898866 89999999987763
Q ss_pred hhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684 293 RLSGGKASWGGTRCAAGNGAICLYREVG 320 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 320 (373)
...++..+|+||++||..
T Consensus 314 ----------~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 314 ----------YGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred ----------eeEEEEcCCEEEEEeccC
Confidence 356677899999999865
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=3.4e-26 Score=208.24 Aligned_cols=252 Identities=14% Similarity=0.120 Sum_probs=182.9
Q ss_pred CceEEEEEecCCCeeEEEEeCC--CCCccccCCCC-CCCCceeEEeeCcEEEEeeCCCC---------ceEEEEEcCccc
Q 046684 50 PAWFLALPTRNRGLCCYVHNPV--SDKWHVLSLDF-LPYPVRPVSSIGSFLLLRPINST---------ILQLVLCNPFTR 117 (373)
Q Consensus 50 ~~~l~~~~~~~~~~~~~~~d~~--~~~w~~~~~~~-~~~~~~~~~~~~g~l~~~gg~~~---------~~~~~v~np~t~ 117 (373)
...++++++... ..++.||.. .+.|.+++.++ .+|..+++++.++.||++||... ..++++|||.++
T Consensus 38 ~~~iyv~gG~~~-~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGSAG-TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCCCC-CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 344555555433 457788876 47899987654 47888888999999999999642 257999999999
Q ss_pred ceeccCC-CCCCCCCCeEEE-EEcCCCCCCCCCceEEEEEeccCCC--CC---------------------------CCC
Q 046684 118 QFRYLPL-LNVSRTNPAVGI-VMEGPAQHGPFPNFRIYVAGGMSDE--PR---------------------------GGA 166 (373)
Q Consensus 118 ~w~~lp~-~~~~~~~~~~~~-~~~~~~~~~~~~~~kl~~~gg~~~~--~~---------------------------~~~ 166 (373)
+|+.+++ .|..+..+++++ .+ ++||++||.... .. ...
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~-----------~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHN-----------GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeC-----------CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 9999985 355555555554 44 999999997510 00 000
Q ss_pred cccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC-----ceE--EEEEECCCCcEEecccCC
Q 046684 167 TYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR-----AYS--VIGFDIESNTWRELSAPM 239 (373)
Q Consensus 167 ~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~-----~~~--i~~yd~~~~~w~~~~~~~ 239 (373)
.....+++||+.+++|+.+.++| ...+..++++.++++||++||.. ... ...||+++++|..+ .++
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~~~p------~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~-~~~ 258 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAGESP------FLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKL-PDL 258 (376)
T ss_pred CcCceEEEEECCCCeeeECCcCC------CCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeec-CCC
Confidence 02367999999999999998885 23456677888999999999742 222 34567899999999 677
Q ss_pred CCCCC--------ceeEEEECCEEEEEEeecCC---------------------ceEEEEeecCCCCCCeEEEEeechhh
Q 046684 240 ADRLE--------FATLVSRNQKLTLIGGTCGG---------------------DACVWELSEGGDDDIWCLIEKVPIEM 290 (373)
Q Consensus 240 p~~~~--------~~~~~~~~g~l~~~gg~~~~---------------------~~~i~~~~~~~~~~~W~~v~~~p~~~ 290 (373)
|.++. +...++++++||++||.... .+++|+++. ++|+.+..||.++
T Consensus 259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~----~~W~~~~~lp~~r 334 (376)
T PRK14131 259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVN----GKWQKVGELPQGL 334 (376)
T ss_pred CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecC----CcccccCcCCCCc
Confidence 66542 12256789999999996421 146788865 9999999999876
Q ss_pred hhhhcCCCCCCCceEEEecCCEEEEEEcCC------ccEEEEEccccCCcccEEE
Q 046684 291 GMRLSGGKASWGGTRCAAGNGAICLYREVG------LGMIIWREDEDKRKWEWVW 339 (373)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~yd~~~~~~~~~W~~ 339 (373)
.. ..++..+|+||++||.. ..+..|+++ .+ .++.
T Consensus 335 ~~-----------~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~--~~--~~~~ 374 (376)
T PRK14131 335 AY-----------GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD--GK--KLTV 374 (376)
T ss_pred cc-----------eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc--CC--EEEE
Confidence 43 56788899999999853 378999999 88 6653
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=3.8e-26 Score=204.33 Aligned_cols=219 Identities=14% Similarity=0.111 Sum_probs=168.3
Q ss_pred eEEEEe-CCCC-CccccCCCCCCCCceeEEeeCcEEEEeeCCCC---ceEEEEEcCcccce----eccCCCCCCCCCCeE
Q 046684 64 CCYVHN-PVSD-KWHVLSLDFLPYPVRPVSSIGSFLLLRPINST---ILQLVLCNPFTRQF----RYLPLLNVSRTNPAV 134 (373)
Q Consensus 64 ~~~~~d-~~~~-~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~---~~~~~v~np~t~~w----~~lp~~~~~~~~~~~ 134 (373)
.++.++ +..+ +|..++.++.++..+..++.++.||++||... .++++.||+.+++| +.+|++|.++..+++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~ 119 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSA 119 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceE
Confidence 566664 3323 69998877788877777888999999999632 46899999999998 788999999988888
Q ss_pred EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEE
Q 046684 135 GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWI 214 (373)
Q Consensus 135 ~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~ 214 (373)
++++ ++||++||.. ......++++||+.+++|+.++++|. ..+..+.++.++++||++
T Consensus 120 ~~~~-----------~~iYv~GG~~-----~~~~~~~v~~yd~~~~~W~~~~~~p~------~~r~~~~~~~~~~~iYv~ 177 (323)
T TIGR03548 120 CYKD-----------GTLYVGGGNR-----NGKPSNKSYLFNLETQEWFELPDFPG------EPRVQPVCVKLQNELYVF 177 (323)
T ss_pred EEEC-----------CEEEEEeCcC-----CCccCceEEEEcCCCCCeeECCCCCC------CCCCcceEEEECCEEEEE
Confidence 8887 9999999975 44446789999999999999988852 346667778899999999
Q ss_pred EcCC---ceEEEEEECCCCcEEecccCCC-----CCCC-ceeEEEECCEEEEEEeecC----------------------
Q 046684 215 TSAR---AYSVIGFDIESNTWRELSAPMA-----DRLE-FATLVSRNQKLTLIGGTCG---------------------- 263 (373)
Q Consensus 215 gg~~---~~~i~~yd~~~~~w~~~~~~~p-----~~~~-~~~~~~~~g~l~~~gg~~~---------------------- 263 (373)
||.. ..++++||+++++|+.+ .+++ ..+. ...++..+++||++||.+.
T Consensus 178 GG~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (323)
T TIGR03548 178 GGGSNIAYTDGYKYSPKKNQWQKV-ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYK 256 (323)
T ss_pred cCCCCccccceEEEecCCCeeEEC-CCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhH
Confidence 8753 24678999999999999 4442 2222 2334455799999999753
Q ss_pred --------------CceEEEEeecCCCCCCeEEEEeech-hhhhhhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684 264 --------------GDACVWELSEGGDDDIWCLIEKVPI-EMGMRLSGGKASWGGTRCAAGNGAICLYREVG 320 (373)
Q Consensus 264 --------------~~~~i~~~~~~~~~~~W~~v~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 320 (373)
..+++|++.. ++|+.+..+|. ++. ...++..+++||++||..
T Consensus 257 ~~~~~~~~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~~r~-----------~~~~~~~~~~iyv~GG~~ 313 (323)
T TIGR03548 257 KEYFLKPPEWYNWNRKILIYNVRT----GKWKSIGNSPFFARC-----------GAALLLTGNNIFSINGEL 313 (323)
T ss_pred HHHhCCCccccCcCceEEEEECCC----CeeeEcccccccccC-----------chheEEECCEEEEEeccc
Confidence 2266777655 99999988774 332 466788899999999863
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=6.1e-26 Score=202.98 Aligned_cols=224 Identities=14% Similarity=0.160 Sum_probs=167.8
Q ss_pred CCceeEEeeCcEEEEeeCCCCc-------------eEEEEEc-Cccc-ceeccCCCCCCCCCCeEEEEEcCCCCCCCCCc
Q 046684 85 YPVRPVSSIGSFLLLRPINSTI-------------LQLVLCN-PFTR-QFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPN 149 (373)
Q Consensus 85 ~~~~~~~~~~g~l~~~gg~~~~-------------~~~~v~n-p~t~-~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (373)
...+.++..++.||++||.+.. .++++++ +..+ +|..++++|.+|..++.++++
T Consensus 4 ~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~----------- 72 (323)
T TIGR03548 4 VAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE----------- 72 (323)
T ss_pred eeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEEC-----------
Confidence 3445678899999999996322 2567664 4433 799999999999877777776
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCce----eeecCCCccccccceeccCCceEEECCEEEEEEcC----CceE
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW----QIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYS 221 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~ 221 (373)
++||++||.. +.....+++.||+.+++| +.++++| ..+..+++++++++||++||. ..+.
T Consensus 73 ~~lyviGG~~-----~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-------~~~~~~~~~~~~~~iYv~GG~~~~~~~~~ 140 (323)
T TIGR03548 73 NGIYYIGGSN-----SSERFSSVYRITLDESKEELICETIGNLP-------FTFENGSACYKDGTLYVGGGNRNGKPSNK 140 (323)
T ss_pred CEEEEEcCCC-----CCCCceeEEEEEEcCCceeeeeeEcCCCC-------cCccCceEEEECCEEEEEeCcCCCccCce
Confidence 9999999986 555567899999999988 6777774 345567788999999999874 3578
Q ss_pred EEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCc---eEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684 222 VIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGD---ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG 297 (373)
Q Consensus 222 i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~---~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~ 297 (373)
+++||+.+++|+.+ .++|. .+..+.+++++++||++||..... +.+|+++ +++|+.+..++........
T Consensus 141 v~~yd~~~~~W~~~-~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~----~~~W~~~~~~~~~~~p~~~-- 213 (323)
T TIGR03548 141 SYLFNLETQEWFEL-PDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK----KNQWQKVADPTTDSEPISL-- 213 (323)
T ss_pred EEEEcCCCCCeeEC-CCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecC----CCeeEECCCCCCCCCceec--
Confidence 99999999999999 56664 577777788999999999975432 4566664 4999998876422111100
Q ss_pred CCCCCceEEEecCCEEEEEEcCC-------------------------------------ccEEEEEccccCCcccEEEe
Q 046684 298 KASWGGTRCAAGNGAICLYREVG-------------------------------------LGMIIWREDEDKRKWEWVWV 340 (373)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~~~~~-------------------------------------~~~~~yd~~~~~~~~~W~~~ 340 (373)
.....++..+++||++||.. +.+++||++ ++ +|+.+
T Consensus 214 ---~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~--~~--~W~~~ 286 (323)
T TIGR03548 214 ---LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR--TG--KWKSI 286 (323)
T ss_pred ---cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC--CC--eeeEc
Confidence 01244556689999999864 359999999 99 99999
Q ss_pred ccccc
Q 046684 341 GGCCL 345 (373)
Q Consensus 341 ~~~~~ 345 (373)
+..|.
T Consensus 287 ~~~p~ 291 (323)
T TIGR03548 287 GNSPF 291 (323)
T ss_pred ccccc
Confidence 86553
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=1.1e-25 Score=204.99 Aligned_cols=245 Identities=16% Similarity=0.195 Sum_probs=173.6
Q ss_pred CccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCc--ccceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCce
Q 046684 74 KWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPF--TRQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNF 150 (373)
Q Consensus 74 ~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~--t~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 150 (373)
.+..++.++.++...+.++.++.||++||.. ...++++|+. +++|..++++| .+|..+++++++ +
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~-----------~ 85 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID-----------G 85 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC-----------C
Confidence 3455555666666667888999999998853 3458888876 47899999987 478777777777 9
Q ss_pred EEEEEeccCCCCC-CCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCC----------
Q 046684 151 RIYVAGGMSDEPR-GGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSAR---------- 218 (373)
Q Consensus 151 kl~~~gg~~~~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~---------- 218 (373)
+||++||...... .......++++||+.+++|+.++.+. +..+..+.++. .+++||++||..
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~------p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d 159 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS------PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFED 159 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC------CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhh
Confidence 9999999761000 00123578999999999999987531 12233444454 899999998743
Q ss_pred ----------------------------ceEEEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCc---e
Q 046684 219 ----------------------------AYSVIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGD---A 266 (373)
Q Consensus 219 ----------------------------~~~i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~---~ 266 (373)
.+.+++||+.+++|+.+ .++|. .+.++.++.++++||++||..... .
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~-~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~ 238 (376)
T PRK14131 160 LAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNA-GESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTD 238 (376)
T ss_pred hhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeEC-CcCCCCCCCcceEEEECCEEEEEeeeECCCcCCh
Confidence 25799999999999999 67775 566777888899999999964321 3
Q ss_pred EEE--EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----------------------cc
Q 046684 267 CVW--ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG----------------------LG 322 (373)
Q Consensus 267 ~i~--~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~ 322 (373)
++| +++. ++++|+.+..||.++....... .....++..+++||++||.. ..
T Consensus 239 ~~~~~~~~~--~~~~W~~~~~~p~~~~~~~~~~---~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (376)
T PRK14131 239 AVKQGKFTG--NNLKWQKLPDLPPAPGGSSQEG---VAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWS 313 (376)
T ss_pred hheEEEecC--CCcceeecCCCCCCCcCCcCCc---cceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceee
Confidence 444 4444 6689999999987653210000 01123456799999999853 12
Q ss_pred EEEEEccccCCcccEEEecccccC
Q 046684 323 MIIWREDEDKRKWEWVWVGGCCLT 346 (373)
Q Consensus 323 ~~~yd~~~~~~~~~W~~~~~~~~~ 346 (373)
+.+||++ ++ +|+.++..|.+
T Consensus 314 ~e~yd~~--~~--~W~~~~~lp~~ 333 (376)
T PRK14131 314 DEIYALV--NG--KWQKVGELPQG 333 (376)
T ss_pred hheEEec--CC--cccccCcCCCC
Confidence 5689999 99 99988765543
No 17
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=1e-25 Score=215.30 Aligned_cols=213 Identities=20% Similarity=0.249 Sum_probs=174.1
Q ss_pred ceEEEEEecCC----CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCC---CceEEEEEcCcccceeccC
Q 046684 51 AWFLALPTRNR----GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINS---TILQLVLCNPFTRQFRYLP 123 (373)
Q Consensus 51 ~~l~~~~~~~~----~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~---~~~~~~v~np~t~~w~~lp 123 (373)
..++++|+... ...++.||+.+++|..++.++.+|..+++++.+|.||++||.. ..+++++|||.+++|+.++
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 34666665432 2478899999999999988888999999999999999999964 2457899999999999999
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCc
Q 046684 124 LLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNE 203 (373)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~ 203 (373)
++|.+|..++++.++ ++||++||... .......+++||+.+++|+.++++| .++..++
T Consensus 375 ~lp~~r~~~~~~~~~-----------~~iYv~GG~~~----~~~~~~~v~~yd~~t~~W~~~~~~p-------~~r~~~~ 432 (534)
T PHA03098 375 PLIFPRYNPCVVNVN-----------NLIYVIGGISK----NDELLKTVECFSLNTNKWSKGSPLP-------ISHYGGC 432 (534)
T ss_pred CcCcCCccceEEEEC-----------CEEEEECCcCC----CCcccceEEEEeCCCCeeeecCCCC-------ccccCce
Confidence 999999988888777 99999999651 2334678999999999999999885 3456677
Q ss_pred eEEECCEEEEEEcCC-------ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC----ceEEEEee
Q 046684 204 SVCTRGMLYWITSAR-------AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG----DACVWELS 272 (373)
Q Consensus 204 ~~~~~g~ly~~gg~~-------~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~----~~~i~~~~ 272 (373)
++..+|++|++||.. ...+++||+++++|+.+ .+++.++..+.+++.+|+||++||.... .+++|+++
T Consensus 433 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCC
Confidence 888999999998742 34599999999999999 6788888888888999999999997643 25666664
Q ss_pred cCCCCCCeEEEEeechhh
Q 046684 273 EGGDDDIWCLIEKVPIEM 290 (373)
Q Consensus 273 ~~~~~~~W~~v~~~p~~~ 290 (373)
+++|+.+..+|...
T Consensus 512 ----~~~W~~~~~~p~~~ 525 (534)
T PHA03098 512 ----TNTWTLFCKFPKVI 525 (534)
T ss_pred ----CCEEEecCCCcccc
Confidence 59999998877543
No 18
>PLN02193 nitrile-specifier protein
Probab=99.94 E-value=1.2e-24 Score=203.07 Aligned_cols=254 Identities=12% Similarity=0.184 Sum_probs=183.3
Q ss_pred CceEEEEEecCC-----CeeEEEEeCCCCCccccCCC-CCC---CCceeEEeeCcEEEEeeCCCC---ceEEEEEcCccc
Q 046684 50 PAWFLALPTRNR-----GLCCYVHNPVSDKWHVLSLD-FLP---YPVRPVSSIGSFLLLRPINST---ILQLVLCNPFTR 117 (373)
Q Consensus 50 ~~~l~~~~~~~~-----~~~~~~~d~~~~~w~~~~~~-~~~---~~~~~~~~~~g~l~~~gg~~~---~~~~~v~np~t~ 117 (373)
...++++++... ...++.||+.+++|..++.. ..| +..+++++.++.||++||... .+++++|||.++
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 445777766431 14688999999999987532 122 346678889999999999632 468999999999
Q ss_pred ceeccCCC---CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccc
Q 046684 118 QFRYLPLL---NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAV 194 (373)
Q Consensus 118 ~w~~lp~~---~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~ 194 (373)
+|++++++ |.+|..+++++.+ ++||++||.. ......++++||+.+++|+.++....
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~-----------~~iYv~GG~~-----~~~~~~~~~~yd~~t~~W~~~~~~~~---- 314 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADE-----------ENVYVFGGVS-----ATARLKTLDSYNIVDKKWFHCSTPGD---- 314 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEEC-----------CEEEEECCCC-----CCCCcceEEEEECCCCEEEeCCCCCC----
Confidence 99999887 7788888887776 9999999986 55556789999999999998865311
Q ss_pred cceeccCCceEEECCEEEEEEcCC---ceEEEEEECCCCcEEecccCC---CCCCCceeEEEECCEEEEEEeecCC----
Q 046684 195 RLTVWTPNESVCTRGMLYWITSAR---AYSVIGFDIESNTWRELSAPM---ADRLEFATLVSRNQKLTLIGGTCGG---- 264 (373)
Q Consensus 195 ~~~~~~~~~~~~~~g~ly~~gg~~---~~~i~~yd~~~~~w~~~~~~~---p~~~~~~~~~~~~g~l~~~gg~~~~---- 264 (373)
.+..|..+.+++++|++|++||.. .+.+++||+++++|+.+ .++ |.+|..+.+++++++||++||....
T Consensus 315 ~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~-~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~ 393 (470)
T PLN02193 315 SFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV-ETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLA 393 (470)
T ss_pred CCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe-ccCCCCCCCcceeEEEEECCEEEEECCccCCcccc
Confidence 134567778888999999998643 47899999999999998 443 6678888889999999999996420
Q ss_pred -----c--eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce-EEEec-CCEEEEEEcCC------ccEEEEEcc
Q 046684 265 -----D--ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT-RCAAG-NGAICLYREVG------LGMIIWRED 329 (373)
Q Consensus 265 -----~--~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~~~------~~~~~yd~~ 329 (373)
. .++|.++. ++++|+.+..++..... +..+..... ..... ++.|+++||.. ++++.++++
T Consensus 394 ~~~~~~~~ndv~~~D~--~t~~W~~~~~~~~~~~~---P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~ 468 (470)
T PLN02193 394 HVGPGQLTDGTFALDT--ETLQWERLDKFGEEEET---PSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGID 468 (470)
T ss_pred ccCccceeccEEEEEc--CcCEEEEcccCCCCCCC---CCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecC
Confidence 1 24666666 77999998765421100 000011111 12222 45699999763 467777765
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.93 E-value=7.6e-25 Score=177.13 Aligned_cols=266 Identities=12% Similarity=0.150 Sum_probs=200.2
Q ss_pred CeeEEEEeCCCCCccccCC-------------CCCCCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceecc--
Q 046684 62 GLCCYVHNPVSDKWHVLSL-------------DFLPYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYL-- 122 (373)
Q Consensus 62 ~~~~~~~d~~~~~w~~~~~-------------~~~~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~l-- 122 (373)
.-.++.+|..+-+|.++++ .+..|+.+.++...+.+|+.||.+. -+.++.|||.|++|.+.
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v 122 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEV 122 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccce
Confidence 3678889999999998865 1234678889999999999999743 34689999999999874
Q ss_pred -CCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccC
Q 046684 123 -PLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTP 201 (373)
Q Consensus 123 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~ 201 (373)
.-.|..|..+++++.+ +..|++||+..+ .....++++++|..|-+|+.+.... .|+..|..
T Consensus 123 ~G~vPgaRDGHsAcV~g-----------n~MyiFGGye~~---a~~FS~d~h~ld~~TmtWr~~~Tkg----~PprwRDF 184 (392)
T KOG4693|consen 123 EGFVPGARDGHSACVWG-----------NQMYIFGGYEED---AQRFSQDTHVLDFATMTWREMHTKG----DPPRWRDF 184 (392)
T ss_pred eeecCCccCCceeeEEC-----------cEEEEecChHHH---HHhhhccceeEeccceeeeehhccC----CCchhhhh
Confidence 3567889999999998 999999998621 2345678999999999999997763 33778888
Q ss_pred CceEEECCEEEEEEcCC-------------ceEEEEEECCCCcEEecccC--CCCCCCceeEEEECCEEEEEEeecCCc-
Q 046684 202 NESVCTRGMLYWITSAR-------------AYSVIGFDIESNTWRELSAP--MADRLEFATLVSRNQKLTLIGGTCGGD- 265 (373)
Q Consensus 202 ~~~~~~~g~ly~~gg~~-------------~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~~~~~~g~l~~~gg~~~~~- 265 (373)
++++++++.+|++||+. -..|+++|++++.|...+.. .|..|..++..+.+|++|++||+.+.-
T Consensus 185 H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln 264 (392)
T KOG4693|consen 185 HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN 264 (392)
T ss_pred hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh
Confidence 99999999999999642 36899999999999877222 266788899999999999999987652
Q ss_pred ---eEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCcc-EEEEEccccCCcccEE
Q 046684 266 ---ACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLG-MIIWREDEDKRKWEWV 338 (373)
Q Consensus 266 ---~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~yd~~~~~~~~~W~ 338 (373)
.++|.++. .+..|+++.. -|.++. ...+++.|+++|++||.+.. ..--.+. + -.
T Consensus 265 ~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRR-----------RqC~~v~g~kv~LFGGTsP~~~~~~Spt---~---~~ 325 (392)
T KOG4693|consen 265 VHFNDLYCFDP--KTSMWSVISVRGKYPSARR-----------RQCSVVSGGKVYLFGGTSPLPCHPLSPT---N---YN 325 (392)
T ss_pred hhhcceeeccc--ccchheeeeccCCCCCccc-----------ceeEEEECCEEEEecCCCCCCCCCCCcc---c---cC
Confidence 57888887 8899999865 344443 47888899999999988631 1112222 1 11
Q ss_pred E-ecccccCCCCcccccceeEEEeccccccee
Q 046684 339 W-VGGCCLTGGKQVQNVPMRGVLLHPSLACAC 369 (373)
Q Consensus 339 ~-~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~ 369 (373)
- ++...+.... -+...-|+|+|.+++
T Consensus 326 G~~~~~~LiD~S-----DLHvLDF~PsLKTLa 352 (392)
T KOG4693|consen 326 GMISPSGLIDLS-----DLHVLDFAPSLKTLA 352 (392)
T ss_pred CCCCcccccccc-----cceeeecChhHHHHH
Confidence 1 1122222222 356788999998865
No 20
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.90 E-value=4.9e-21 Score=162.90 Aligned_cols=214 Identities=20% Similarity=0.356 Sum_probs=147.0
Q ss_pred EeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCC---CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc
Q 046684 91 SSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSR---TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT 167 (373)
Q Consensus 91 ~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~---~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~ 167 (373)
.+|||+||+... ..+++|||.|++|+.||+.+.+. .....++..+..+.+ |||+.+.... ...
T Consensus 2 ~sCnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~-----YKVv~~~~~~-----~~~ 67 (230)
T TIGR01640 2 VPCDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQ-----YKVLCFSDRS-----GNR 67 (230)
T ss_pred cccceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCc-----EEEEEEEeec-----CCC
Confidence 589999987654 67999999999999998765421 111234444444555 9999997542 222
Q ss_pred ccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC---c-eEEEEEECCCCcEEe-cccCCCCC
Q 046684 168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR---A-YSVIGFDIESNTWRE-LSAPMADR 242 (373)
Q Consensus 168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~-~~i~~yd~~~~~w~~-~~~~~p~~ 242 (373)
....+++|++++++|+.+...+. ... .....++++|.+||+.... . ..|++||+++++|+. + ++|..
T Consensus 68 ~~~~~~Vys~~~~~Wr~~~~~~~-----~~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i--~~P~~ 139 (230)
T TIGR01640 68 NQSEHQVYTLGSNSWRTIECSPP-----HHP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFI--PLPCG 139 (230)
T ss_pred CCccEEEEEeCCCCccccccCCC-----Ccc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeee--ecCcc
Confidence 45689999999999999875431 111 1223789999999997321 1 279999999999995 6 44432
Q ss_pred C----CceeEEEECCEEEEEEeecC-CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEE
Q 046684 243 L----EFATLVSRNQKLTLIGGTCG-GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR 317 (373)
Q Consensus 243 ~----~~~~~~~~~g~l~~~gg~~~-~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 317 (373)
. ....++.++|+|.++..... ..++||.+++++ +..|+++..++.+....+.... ...++..+++|++..
T Consensus 140 ~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~-~~~W~k~~~i~~~~~~~~~~~~----~~~~~~~~g~I~~~~ 214 (230)
T TIGR01640 140 NSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVPIPPLPDLVDDN----FLSGFTDKGEIVLCC 214 (230)
T ss_pred ccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCC-CCceeEEEEEcCcchhhhhhhe----eEeEEeeCCEEEEEe
Confidence 2 24578899999999886543 348999999763 4569999888753332222111 245667788888876
Q ss_pred cC-Ccc-EEEEEccccCC
Q 046684 318 EV-GLG-MIIWREDEDKR 333 (373)
Q Consensus 318 ~~-~~~-~~~yd~~~~~~ 333 (373)
.. ... ++.||++ ++
T Consensus 215 ~~~~~~~~~~y~~~--~~ 230 (230)
T TIGR01640 215 EDENPFYIFYYNVG--EN 230 (230)
T ss_pred CCCCceEEEEEecc--CC
Confidence 53 233 9999998 64
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.88 E-value=1.5e-21 Score=158.10 Aligned_cols=224 Identities=12% Similarity=0.157 Sum_probs=171.8
Q ss_pred CCCceeEEeeCcEEEEeeCCC--------CceEEEEEcCcccceeccCC-------------CCCCCCCCeEEEEEcCCC
Q 046684 84 PYPVRPVSSIGSFLLLRPINS--------TILQLVLCNPFTRQFRYLPL-------------LNVSRTNPAVGIVMEGPA 142 (373)
Q Consensus 84 ~~~~~~~~~~~g~l~~~gg~~--------~~~~~~v~np~t~~w~~lp~-------------~~~~~~~~~~~~~~~~~~ 142 (373)
.|-.+++...+..||-+||.. ..-+++++|..+-+|+++|+ .|..|+.++++.+.
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~---- 88 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ---- 88 (392)
T ss_pred ccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc----
Confidence 345667788899999999862 23478999999999999987 23458888888888
Q ss_pred CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC-----
Q 046684 143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----- 217 (373)
Q Consensus 143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----- 217 (373)
.++|+.||++ ......+.++.||++++.|.+...-. .-+..|.++++++.++.+|++||.
T Consensus 89 -------d~~yvWGGRN----D~egaCN~Ly~fDp~t~~W~~p~v~G----~vPgaRDGHsAcV~gn~MyiFGGye~~a~ 153 (392)
T KOG4693|consen 89 -------DKAYVWGGRN----DDEGACNLLYEFDPETNVWKKPEVEG----FVPGARDGHSACVWGNQMYIFGGYEEDAQ 153 (392)
T ss_pred -------ceEEEEcCcc----Ccccccceeeeeccccccccccceee----ecCCccCCceeeEECcEEEEecChHHHHH
Confidence 9999999987 13455678999999999998654321 114567888999999999999863
Q ss_pred -CceEEEEEECCCCcEEeccc--CCCCCCCceeEEEECCEEEEEEeecCCc-------------eEEEEeecCCCCCCeE
Q 046684 218 -RAYSVIGFDIESNTWRELSA--PMADRLEFATLVSRNQKLTLIGGTCGGD-------------ACVWELSEGGDDDIWC 281 (373)
Q Consensus 218 -~~~~i~~yd~~~~~w~~~~~--~~p~~~~~~~~~~~~g~l~~~gg~~~~~-------------~~i~~~~~~~~~~~W~ 281 (373)
...++.++|.++.+|+.+.. .+|.-|..+..+++++.+|++||..+.. +...++ .++.|.
T Consensus 154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~----~T~aW~ 229 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL----ATGAWT 229 (392)
T ss_pred hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec----cccccc
Confidence 35789999999999998843 2345567788888999999999976542 455555 459998
Q ss_pred EEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-------ccEEEEEccccCCcccEEEecc
Q 046684 282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-------LGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 282 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
.-.+-+... .+++.+...+.+++||++||+. +++++||++ +. .|+.+..
T Consensus 230 r~p~~~~~P--------~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~--t~--~W~~I~~ 285 (392)
T KOG4693|consen 230 RTPENTMKP--------GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK--TS--MWSVISV 285 (392)
T ss_pred cCCCCCcCC--------CcccccceEEEcceEEEecccchhhhhhhcceeecccc--cc--hheeeec
Confidence 764322111 2234688889999999999875 579999999 99 9998843
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.80 E-value=7.3e-18 Score=157.21 Aligned_cols=228 Identities=15% Similarity=0.158 Sum_probs=181.2
Q ss_pred CCCCCCceeEEeeCcEEEEeeCCC---Cce--EEEEEcCcccceeccC---CCCCCCCCCeEEEEEcCCCCCCCCCceEE
Q 046684 81 DFLPYPVRPVSSIGSFLLLRPINS---TIL--QLVLCNPFTRQFRYLP---LLNVSRTNPAVGIVMEGPAQHGPFPNFRI 152 (373)
Q Consensus 81 ~~~~~~~~~~~~~~g~l~~~gg~~---~~~--~~~v~np~t~~w~~lp---~~~~~~~~~~~~~~~~~~~~~~~~~~~kl 152 (373)
.+.+|..++++.+++.+|++||.. ... +++++|..+..|...+ ..|.++..+.+++++ .+|
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-----------~~l 125 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-----------DKL 125 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEEC-----------CeE
Confidence 456788888888899999999862 122 5999999999998754 445788888888888 999
Q ss_pred EEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC-----CceEEEEEEC
Q 046684 153 YVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA-----RAYSVIGFDI 227 (373)
Q Consensus 153 ~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~-----~~~~i~~yd~ 227 (373)
|++||... ......+++.||..+++|+.+..... ++..|.+++++.++.++|++||. ..+++++||+
T Consensus 126 ~lfGG~~~----~~~~~~~l~~~d~~t~~W~~l~~~~~----~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~ 197 (482)
T KOG0379|consen 126 YLFGGTDK----KYRNLNELHSLDLSTRTWSLLSPTGD----PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDL 197 (482)
T ss_pred EEEccccC----CCCChhheEeccCCCCcEEEecCcCC----CCCCcccceEEEECCEEEEECCccCcccceeeeeeecc
Confidence 99999861 24457799999999999999877643 26788999999999999999953 4689999999
Q ss_pred CCCcEEeccc--CCCCCCCceeEEEECCEEEEEEeecCCc---eEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCC
Q 046684 228 ESNTWRELSA--PMADRLEFATLVSRNQKLTLIGGTCGGD---ACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKA 299 (373)
Q Consensus 228 ~~~~w~~~~~--~~p~~~~~~~~~~~~g~l~~~gg~~~~~---~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~ 299 (373)
++.+|.++.. +.|.+|.++.+++.++++++++|.+... -++|.++. .+..|.++.. +|.++.
T Consensus 198 ~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl--~~~~W~~~~~~g~~p~~R~-------- 267 (482)
T KOG0379|consen 198 ETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDL--STWEWKLLPTGGDLPSPRS-------- 267 (482)
T ss_pred ccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeec--ccceeeeccccCCCCCCcc--------
Confidence 9999998733 3467889999999999999999987322 56777777 6688886543 455554
Q ss_pred CCCceEEEecCCEEEEEEcCCc-------cEEEEEccccCCcccEEEecccc
Q 046684 300 SWGGTRCAAGNGAICLYREVGL-------GMIIWREDEDKRKWEWVWVGGCC 344 (373)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~~~-------~~~~yd~~~~~~~~~W~~~~~~~ 344 (373)
.+..+..++.++++||... .++.||.+ +. .|.++...+
T Consensus 268 ---~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~--~w~~~~~~~ 312 (482)
T KOG0379|consen 268 ---GHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TL--VWSKVESVG 312 (482)
T ss_pred ---eeeeEEECCEEEEEcCCccccccccccccccccc--cc--ceeeeeccc
Confidence 3666688999999986543 57889999 99 999887665
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.77 E-value=5.3e-17 Score=151.47 Aligned_cols=202 Identities=18% Similarity=0.224 Sum_probs=167.4
Q ss_pred eEEEEeCCCCCccccC---CCCCCCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceeccC---CCCCCCCCCe
Q 046684 64 CCYVHNPVSDKWHVLS---LDFLPYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYLP---LLNVSRTNPA 133 (373)
Q Consensus 64 ~~~~~d~~~~~w~~~~---~~~~~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp---~~~~~~~~~~ 133 (373)
.++++|..+..|.... ..+.++.++.++..+..||++||... ..+++.||+.|++|..+. ..|.+|..|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 4999999999998762 34467888999999999999999742 348999999999998874 3577899999
Q ss_pred EEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc-ccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEE
Q 046684 134 VGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT-YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLY 212 (373)
Q Consensus 134 ~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly 212 (373)
+++.+ .++|++||.. ... ...++++||..+.+|.++...... +.+|+.++++.++++++
T Consensus 169 ~~~~g-----------~~l~vfGG~~-----~~~~~~ndl~i~d~~~~~W~~~~~~g~~----P~pR~gH~~~~~~~~~~ 228 (482)
T KOG0379|consen 169 ATVVG-----------TKLVVFGGIG-----GTGDSLNDLHIYDLETSTWSELDTQGEA----PSPRYGHAMVVVGNKLL 228 (482)
T ss_pred EEEEC-----------CEEEEECCcc-----CcccceeeeeeeccccccceecccCCCC----CCCCCCceEEEECCeEE
Confidence 99988 9999999987 433 788999999999999998765332 56889999999999999
Q ss_pred EEEcCC-----ceEEEEEECCCCcEEecc--cCCCCCCCceeEEEECCEEEEEEeecCC----ceEEEEeecCCCCCCeE
Q 046684 213 WITSAR-----AYSVIGFDIESNTWRELS--APMADRLEFATLVSRNQKLTLIGGTCGG----DACVWELSEGGDDDIWC 281 (373)
Q Consensus 213 ~~gg~~-----~~~i~~yd~~~~~w~~~~--~~~p~~~~~~~~~~~~g~l~~~gg~~~~----~~~i~~~~~~~~~~~W~ 281 (373)
+++|.. .++++.+|+.+.+|..+. ...|.+|..+.++..+..++++||.... .-+.|.++. ++..|.
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~--~~~~w~ 306 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDL--ETLVWS 306 (482)
T ss_pred EEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccccc--ccccee
Confidence 998643 578999999999999663 2357788889999999999999997663 257888887 789999
Q ss_pred EEEeec
Q 046684 282 LIEKVP 287 (373)
Q Consensus 282 ~v~~~p 287 (373)
++....
T Consensus 307 ~~~~~~ 312 (482)
T KOG0379|consen 307 KVESVG 312 (482)
T ss_pred eeeccc
Confidence 997766
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.77 E-value=2e-17 Score=142.16 Aligned_cols=230 Identities=13% Similarity=0.156 Sum_probs=162.4
Q ss_pred CCCCCCceeEE--eeCcEEEEeeCC--CC-----ceEEEEEcCcccceecc--CCCCCCCCCCeEEEEEcCCCCCCCCCc
Q 046684 81 DFLPYPVRPVS--SIGSFLLLRPIN--ST-----ILQLVLCNPFTRQFRYL--PLLNVSRTNPAVGIVMEGPAQHGPFPN 149 (373)
Q Consensus 81 ~~~~~~~~~~~--~~~g~l~~~gg~--~~-----~~~~~v~np~t~~w~~l--p~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (373)
++.||...++. .-.+-|+++||. ++ -+++++||..+++|+.+ |..|.+|..+.++++-.
T Consensus 63 ~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s---------- 132 (521)
T KOG1230|consen 63 PPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS---------- 132 (521)
T ss_pred CCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEecc----------
Confidence 44555544332 223445555653 11 24789999999999986 66678888777766652
Q ss_pred eEEEEEeccCCCCCCC-CcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC--------Cce
Q 046684 150 FRIYVAGGMSDEPRGG-ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA--------RAY 220 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~--------~~~ 220 (373)
+.++++||--..+... .....++|+||..+++|..+..... +.+|.+|.++.....|.++||- +.+
T Consensus 133 ~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~-----PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyN 207 (521)
T KOG1230|consen 133 NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG-----PSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYN 207 (521)
T ss_pred CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC-----CCCCccceeEEeeeeEEEEcceecCCCceEEee
Confidence 7899999864222222 2235789999999999999865422 5678899999999999999862 368
Q ss_pred EEEEEECCCCcEEecccCC--CCCCCceeEEEE-CCEEEEEEeecCCc-----------eEEEEeecC-CCC--CCeEEE
Q 046684 221 SVIGFDIESNTWRELSAPM--ADRLEFATLVSR-NQKLTLIGGTCGGD-----------ACVWELSEG-GDD--DIWCLI 283 (373)
Q Consensus 221 ~i~~yd~~~~~w~~~~~~~--p~~~~~~~~~~~-~g~l~~~gg~~~~~-----------~~i~~~~~~-~~~--~~W~~v 283 (373)
++++||+++=+|+.+..+- |.+|.++.+.+. +|.|++.||+.... .+.|.|+.. +.. -.|+++
T Consensus 208 Dvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv 287 (521)
T KOG1230|consen 208 DVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV 287 (521)
T ss_pred eeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec
Confidence 9999999999999994433 678888888887 99999999985431 568888762 112 356777
Q ss_pred Eee---chhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCC--------------ccEEEEEccccCCcccEEEe
Q 046684 284 EKV---PIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVG--------------LGMIIWREDEDKRKWEWVWV 340 (373)
Q Consensus 284 ~~~---p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~--------------~~~~~yd~~~~~~~~~W~~~ 340 (373)
... |.++. ++.++.. +++-+++||.. ++++.||+. .+ +|...
T Consensus 288 kp~g~kPspRs-----------gfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt--~n--rW~~~ 347 (521)
T KOG1230|consen 288 KPSGVKPSPRS-----------GFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT--RN--RWSEG 347 (521)
T ss_pred cCCCCCCCCCC-----------ceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc--cc--hhhHh
Confidence 653 33332 3555554 56778877532 579999999 99 99865
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.73 E-value=3.2e-16 Score=134.78 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=173.1
Q ss_pred CcchHHHHHHHHhcCChhhHHH------hhcccccchhccccccchhhccCCCCceEEEEEecCC-C------eeEEEEe
Q 046684 3 SNLHLDVLANIFSFLSPDSLAR------AKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNR-G------LCCYVHN 69 (373)
Q Consensus 3 ~~Lp~dll~~Il~rLP~~~l~r------~r~Vck~W~~li~~~~f~~~~~~~~~~~l~~~~~~~~-~------~~~~~~d 69 (373)
.+|-++.|.+|+..|..+..-. ...-||+=-+|... +...-|++|++.-. . +.++.||
T Consensus 34 ~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~n---------PekeELilfGGEf~ngqkT~vYndLy~Yn 104 (521)
T KOG1230|consen 34 EELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFAN---------PEKEELILFGGEFYNGQKTHVYNDLYSYN 104 (521)
T ss_pred cccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeec---------cCcceeEEecceeecceeEEEeeeeeEEe
Confidence 3566778899998887775300 01112222222211 33445677665321 1 6888899
Q ss_pred CCCCCcccc--CCCCCCCCceeEEe-eCcEEEEeeCCCC---------ceEEEEEcCcccceecc--CCCCCCCCCCeEE
Q 046684 70 PVSDKWHVL--SLDFLPYPVRPVSS-IGSFLLLRPINST---------ILQLVLCNPFTRQFRYL--PLLNVSRTNPAVG 135 (373)
Q Consensus 70 ~~~~~w~~~--~~~~~~~~~~~~~~-~~g~l~~~gg~~~---------~~~~~v~np~t~~w~~l--p~~~~~~~~~~~~ 135 (373)
...+.|.++ +..+.||.++.+++ ..|.++++||.-. -.++|+++..|++|.+| +--|.+|..|-++
T Consensus 105 ~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMv 184 (521)
T KOG1230|consen 105 TKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMV 184 (521)
T ss_pred ccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeE
Confidence 999999998 55667887765444 4579999998621 24789999999999997 4567899999999
Q ss_pred EEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEE
Q 046684 136 IVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWI 214 (373)
Q Consensus 136 ~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~ 214 (373)
+.. .+++++||.... ...-.+.+++++||..+-+|.++.+.-. -+.+|.+...++. .|.||+.
T Consensus 185 awK-----------~~lilFGGFhd~-nr~y~YyNDvy~FdLdtykW~Klepsga----~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 185 AWK-----------RQLILFGGFHDS-NRDYIYYNDVYAFDLDTYKWSKLEPSGA----GPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred Eee-----------eeEEEEcceecC-CCceEEeeeeEEEeccceeeeeccCCCC----CCCCCCcceEEecCCCcEEEE
Confidence 998 999999997621 1234467899999999999999976321 1455666666665 8999999
Q ss_pred EcCC-------------ceEEEEEECCCC-----cEEecccCC---CCCCCceeEEEE-CCEEEEEEeecCCc-------
Q 046684 215 TSAR-------------AYSVIGFDIESN-----TWRELSAPM---ADRLEFATLVSR-NQKLTLIGGTCGGD------- 265 (373)
Q Consensus 215 gg~~-------------~~~i~~yd~~~~-----~w~~~~~~~---p~~~~~~~~~~~-~g~l~~~gg~~~~~------- 265 (373)
||.+ -.+++.++++.+ +|..+ .|. |.+|.++++++. +++-+.+||..+-.
T Consensus 249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv-kp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~ 327 (521)
T KOG1230|consen 249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV-KPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLS 327 (521)
T ss_pred cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec-cCCCCCCCCCCceeEEEecCCceEEecceecccccchhhh
Confidence 8643 357888888873 67777 443 667877776665 66889999865511
Q ss_pred ----eEEEEeecCCCCCCeEEE
Q 046684 266 ----ACVWELSEGGDDDIWCLI 283 (373)
Q Consensus 266 ----~~i~~~~~~~~~~~W~~v 283 (373)
.++|-++. +.++|...
T Consensus 328 g~F~NDLy~fdl--t~nrW~~~ 347 (521)
T KOG1230|consen 328 GEFFNDLYFFDL--TRNRWSEG 347 (521)
T ss_pred hhhhhhhhheec--ccchhhHh
Confidence 23444443 55899765
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.69 E-value=1.5e-15 Score=133.93 Aligned_cols=265 Identities=13% Similarity=0.123 Sum_probs=176.3
Q ss_pred cchhccccccchhhccC-----CCCceEEEEEecCCC--eeEEEEeCCCCCccccC---CCCCCCCceeEEeeCcEEEEe
Q 046684 31 HWHTCAKLYHLHSVSQH-----RRPAWFLALPTRNRG--LCCYVHNPVSDKWHVLS---LDFLPYPVRPVSSIGSFLLLR 100 (373)
Q Consensus 31 ~W~~li~~~~f~~~~~~-----~~~~~l~~~~~~~~~--~~~~~~d~~~~~w~~~~---~~~~~~~~~~~~~~~g~l~~~ 100 (373)
+|+++.....-.-+.|+ .-..++++|++.+++ .++++||..++.|.... ..+.+-..+...+.|..||++
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvF 97 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVF 97 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEE
Confidence 68877766544444444 235567777776654 78999999999997542 122233445667778889999
Q ss_pred eCCC----CceEEEEEcCcccceeccC-------CCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCC----CC
Q 046684 101 PINS----TILQLVLCNPFTRQFRYLP-------LLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPR----GG 165 (373)
Q Consensus 101 gg~~----~~~~~~v~np~t~~w~~lp-------~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~----~~ 165 (373)
||.. ..++++-.....=+|+++. ++|.+|-.|++.+++ +|.|++||...+.. .-
T Consensus 98 GGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g-----------nKcYlFGGLaNdseDpknNv 166 (830)
T KOG4152|consen 98 GGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG-----------NKCYLFGGLANDSEDPKNNV 166 (830)
T ss_pred ccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec-----------cEeEEeccccccccCccccc
Confidence 9841 1223333333333467763 345789999999998 99999999653211 11
Q ss_pred CcccceEEEEECCCCc----eeeecCCCccccccceeccCCceEEE------CCEEEEEEc---CCceEEEEEECCCCcE
Q 046684 166 ATYESMVEMYDSRHDA----WQIIGSMPVEFAVRLTVWTPNESVCT------RGMLYWITS---ARAYSVIGFDIESNTW 232 (373)
Q Consensus 166 ~~~~~~~~~yd~~~~~----W~~~~~~p~~~~~~~~~~~~~~~~~~------~g~ly~~gg---~~~~~i~~yd~~~~~w 232 (373)
.++.+++++.+.+.++ |...... ...+.+|..|.++.+ ..++|++|| -+..+++.+|+++-.|
T Consensus 167 PrYLnDlY~leL~~Gsgvv~W~ip~t~----Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W 242 (830)
T KOG4152|consen 167 PRYLNDLYILELRPGSGVVAWDIPITY----GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTW 242 (830)
T ss_pred chhhcceEEEEeccCCceEEEeccccc----CCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeec
Confidence 3567889998887654 7654322 111345666666655 358999984 4678999999999999
Q ss_pred Eeccc--CCCCCCCceeEEEECCEEEEEEeec-----C-------------CceEEEEeecCCCCCCeEEEEee--chhh
Q 046684 233 RELSA--PMADRLEFATLVSRNQKLTLIGGTC-----G-------------GDACVWELSEGGDDDIWCLIEKV--PIEM 290 (373)
Q Consensus 233 ~~~~~--~~p~~~~~~~~~~~~g~l~~~gg~~-----~-------------~~~~i~~~~~~~~~~~W~~v~~~--p~~~ 290 (373)
.+... ..|.+|.-+..+.+++++|++||.- + ..+.+|++++ +.|+.+..- ....
T Consensus 243 ~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt----~~W~tl~~d~~ed~t 318 (830)
T KOG4152|consen 243 NKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDT----MAWETLLMDTLEDNT 318 (830)
T ss_pred ccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecc----hheeeeeeccccccc
Confidence 87622 2366677788899999999999841 1 0177999977 999987531 1111
Q ss_pred hhhhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684 291 GMRLSGGKASWGGTRCAAGNGAICLYREVG 320 (373)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 320 (373)
.. +.+.++.++++|+++|+..|.+
T Consensus 319 iP------R~RAGHCAvAigtRlYiWSGRD 342 (830)
T KOG4152|consen 319 IP------RARAGHCAVAIGTRLYIWSGRD 342 (830)
T ss_pred cc------cccccceeEEeccEEEEEeccc
Confidence 11 2234688999999999998653
No 27
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.65 E-value=2.6e-15 Score=132.55 Aligned_cols=237 Identities=15% Similarity=0.159 Sum_probs=163.0
Q ss_pred CCccccC----CCCCCCCceeEEeeCcEEEEeeCCC--CceEEEEEcCcccceecc---CCCCCCCCCCeEEEEEcCCCC
Q 046684 73 DKWHVLS----LDFLPYPVRPVSSIGSFLLLRPINS--TILQLVLCNPFTRQFRYL---PLLNVSRTNPAVGIVMEGPAQ 143 (373)
Q Consensus 73 ~~w~~~~----~~~~~~~~~~~~~~~g~l~~~gg~~--~~~~~~v~np~t~~w~~l---p~~~~~~~~~~~~~~~~~~~~ 143 (373)
-+|+... +-+-+|+.|-+.....+|.++||.+ -.+++++||..|++|..- ...|.+-. +..++.++
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcA--A~GfvcdG--- 91 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCA--AFGFVCDG--- 91 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchh--hcceEecC---
Confidence 4677652 2345677777889999999988753 245799999999999752 22333322 33333333
Q ss_pred CCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC------
Q 046684 144 HGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA------ 217 (373)
Q Consensus 144 ~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~------ 217 (373)
.+|+++||.- +...+.++++-.-.....|+++.+-+..-..|+++|.+|+-..++++-|++||.
T Consensus 92 ------trilvFGGMv----EYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD 161 (830)
T KOG4152|consen 92 ------TRILVFGGMV----EYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED 161 (830)
T ss_pred ------ceEEEEccEe----eeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence 8999999975 244555555544444566787766443323447788899999999999999952
Q ss_pred -------CceEEEEEECCCC----cEEec--ccCCCCCCCceeEEEE------CCEEEEEEeecCCc-eEEEEeecCCCC
Q 046684 218 -------RAYSVIGFDIESN----TWREL--SAPMADRLEFATLVSR------NQKLTLIGGTCGGD-ACVWELSEGGDD 277 (373)
Q Consensus 218 -------~~~~i~~yd~~~~----~w~~~--~~~~p~~~~~~~~~~~------~g~l~~~gg~~~~~-~~i~~~~~~~~~ 277 (373)
+.++++..++.-+ .|... ..+.|.+|+.+..+.. ..++++.||..+.. -++|.++. ++
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl--~T 239 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDL--DT 239 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEec--ce
Confidence 3567777777644 36643 1345778888877765 34799999987655 47999998 88
Q ss_pred CCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC-------------------ccEEEEEccccCCcc
Q 046684 278 DIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG-------------------LGMIIWREDEDKRKW 335 (373)
Q Consensus 278 ~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~yd~~~~~~~~ 335 (373)
.+|.+..- .|.++. -+....+||++|++||.. ..+-+.|++ +.
T Consensus 240 l~W~kp~~~G~~PlPRS-----------LHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld--t~-- 304 (830)
T KOG4152|consen 240 LTWNKPSLSGVAPLPRS-----------LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD--TM-- 304 (830)
T ss_pred eecccccccCCCCCCcc-----------cccceeecceeEEecceeeeeccccccccccceeeeccceeeeeec--ch--
Confidence 99998643 333433 277888999999999642 456778888 88
Q ss_pred cEEEec
Q 046684 336 EWVWVG 341 (373)
Q Consensus 336 ~W~~~~ 341 (373)
+|+-+-
T Consensus 305 ~W~tl~ 310 (830)
T KOG4152|consen 305 AWETLL 310 (830)
T ss_pred heeeee
Confidence 887663
No 28
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.58 E-value=3.2e-13 Score=118.88 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=152.2
Q ss_pred CCcchHHHHHHHHhcCC-hhhHHHhhcccccchhccccccchhhccCCCCceEEEEEecCCCeeEEEEeCCCCCc-cccC
Q 046684 2 WSNLHLDVLANIFSFLS-PDSLARAKSVCSHWHTCAKLYHLHSVSQHRRPAWFLALPTRNRGLCCYVHNPVSDKW-HVLS 79 (373)
Q Consensus 2 ~~~Lp~dll~~Il~rLP-~~~l~r~r~Vck~W~~li~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~w-~~~~ 79 (373)
|++||+|||..|..||| ..|++|+|+|||+||+.+....- ....++.|+++.-..... ......|+...+- ..+.
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ls 80 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK--KNPFRTRPLILFNPINPS-ETLTDDRSYISRPGAFLS 80 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc--cCCcccccccccCcccCC-CCccccccccccccceee
Confidence 99999999999999997 55999999999999998864210 000123345443211000 0000011110000 0000
Q ss_pred CCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCC-------CCCeEEEEEcCCCCCCCCC----
Q 046684 80 LDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSR-------TNPAVGIVMEGPAQHGPFP---- 148 (373)
Q Consensus 80 ~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~-------~~~~~~~~~~~~~~~~~~~---- 148 (373)
...+-+.........|++...+.......+...||.++.-...++..... -..+..+....... -...
T Consensus 81 ~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~-~~~~~~~~ 159 (373)
T PLN03215 81 RAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRR-ETRPGYQR 159 (373)
T ss_pred eeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccccc-ccccceeE
Confidence 00000000111245677776655434567788888887744444311100 00011111100000 0000
Q ss_pred ------------ceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEc
Q 046684 149 ------------NFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS 216 (373)
Q Consensus 149 ------------~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg 216 (373)
++-+++++.. ..+..+. .+.|+.+.... .....+++++|++|++.
T Consensus 160 ~~~~~~~~~~~~~~~vl~i~~~-----------g~l~~w~--~~~Wt~l~~~~---------~~~~DIi~~kGkfYAvD- 216 (373)
T PLN03215 160 SALVKVKEGDNHRDGVLGIGRD-----------GKINYWD--GNVLKALKQMG---------YHFSDIIVHKGQTYALD- 216 (373)
T ss_pred EEEEEeecCCCcceEEEEEeec-----------CcEeeec--CCeeeEccCCC---------ceeeEEEEECCEEEEEc-
Confidence 0112222211 1122232 48899987542 12346799999999993
Q ss_pred CCceEEEEEECCCCcEEecccCC------CCCCCceeEEEECCEEEEEEeecC----------------CceEEEEeecC
Q 046684 217 ARAYSVIGFDIESNTWRELSAPM------ADRLEFATLVSRNQKLTLIGGTCG----------------GDACVWELSEG 274 (373)
Q Consensus 217 ~~~~~i~~yd~~~~~w~~~~~~~------p~~~~~~~~~~~~g~l~~~gg~~~----------------~~~~i~~~~~~ 274 (373)
....++++|.+-+ -.++.... ........+++..|+|+++..... ..++||+++.
T Consensus 217 -~~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~- 293 (373)
T PLN03215 217 -SIGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD- 293 (373)
T ss_pred -CCCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC-
Confidence 4567888875321 12221111 011123458889999999987421 1278999987
Q ss_pred CCCCCeEEEEeechhhhhhhcCCCCCCCceEEE------ecCCEEEEEEcCCccEEEEEccccCC
Q 046684 275 GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA------AGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 275 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
+..+|.++..+....+.-..+. ...+. ..+|.||+.+.. ...+||++ .+
T Consensus 294 -~~~~WveV~sLgd~aLFlG~~~-----s~sv~a~e~pG~k~NcIYFtdd~--~~~v~~~~--dg 348 (373)
T PLN03215 294 -ELAKWMEVKTLGDNAFVMATDT-----CFSVLAHEFYGCLPNSIYFTEDT--MPKVFKLD--NG 348 (373)
T ss_pred -CCCcEEEecccCCeEEEEECCc-----cEEEecCCCCCccCCEEEEECCC--cceEEECC--CC
Confidence 8899999999876543211111 12222 236999999766 47799999 87
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.45 E-value=1.1e-11 Score=105.72 Aligned_cols=226 Identities=17% Similarity=0.267 Sum_probs=151.8
Q ss_pred eEEeeCcEEEEeeCCCCceEEEEEcCcc--cceeccCCCC-CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC
Q 046684 89 PVSSIGSFLLLRPINSTILQLVLCNPFT--RQFRYLPLLN-VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG 165 (373)
Q Consensus 89 ~~~~~~g~l~~~gg~~~~~~~~v~np~t--~~w~~lp~~~-~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~ 165 (373)
.-+..+..+|+.-| +.....+..|... +.|+++...| .+|.....++++ ++||++||.....+..
T Consensus 41 ~Ga~ig~~~YVGLG-s~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~-----------~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 41 AGALIGDTVYVGLG-SAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIG-----------GKLYVFGGYGKSVSSS 108 (381)
T ss_pred ccceecceEEEEec-cCCccceehhhhcCCCCceEcccCCCcccccchheeeC-----------CeEEEeeccccCCCCC
Confidence 45566778999766 3345667776654 5799999888 456676777777 9999999986432223
Q ss_pred CcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-EEEEEEcC---------------------------
Q 046684 166 ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSA--------------------------- 217 (373)
Q Consensus 166 ~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~--------------------------- 217 (373)
.....+++.||+.+++|.++...- +.....+.++.+++ ++|++||.
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~s------P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~ 182 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTRS------PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA 182 (381)
T ss_pred ceEeeeeEEecCCCChhheecccc------ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH
Confidence 445678999999999999987652 23455666677777 99999842
Q ss_pred -----------CceEEEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCc-----eEEEEeecCCCCCCe
Q 046684 218 -----------RAYSVIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGD-----ACVWELSEGGDDDIW 280 (373)
Q Consensus 218 -----------~~~~i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~-----~~i~~~~~~~~~~~W 280 (373)
....++.|||++++|+.+ ...|. ...+..++.-+++|.++.|.-... ....++.. +..+|
T Consensus 183 ~yf~~~~~dy~~n~ev~sy~p~~n~W~~~-G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~--~~~~w 259 (381)
T COG3055 183 HYFDKKAEDYFFNKEVLSYDPSTNQWRNL-GENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG--DNLKW 259 (381)
T ss_pred HHhCCCHHHhcccccccccccccchhhhc-CcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEecc--Cceee
Confidence 146899999999999998 44443 333334444577799988764322 44555554 67899
Q ss_pred EEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC------------------------CccEEEEEccccCCccc
Q 046684 281 CLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV------------------------GLGMIIWREDEDKRKWE 336 (373)
Q Consensus 281 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------~~~~~~yd~~~~~~~~~ 336 (373)
.++..+|.+..... .+. .+...-..++.+.+.++. ..+|+++| .+ .
T Consensus 260 ~~l~~lp~~~~~~~-eGv---AGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d----~g--~ 329 (381)
T COG3055 260 LKLSDLPAPIGSNK-EGV---AGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD----NG--S 329 (381)
T ss_pred eeccCCCCCCCCCc-ccc---ceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc----CC--c
Confidence 99999887765432 221 111122235666666532 24566666 45 9
Q ss_pred EEEeccccc
Q 046684 337 WVWVGGCCL 345 (373)
Q Consensus 337 W~~~~~~~~ 345 (373)
|+.+..+|.
T Consensus 330 Wk~~GeLp~ 338 (381)
T COG3055 330 WKIVGELPQ 338 (381)
T ss_pred eeeecccCC
Confidence 999888775
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.40 E-value=2.9e-11 Score=103.14 Aligned_cols=226 Identities=16% Similarity=0.192 Sum_probs=148.5
Q ss_pred eeEEEEeCC--CCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCC--------CceEEEEEcCcccceeccCCC-CCCCC
Q 046684 63 LCCYVHNPV--SDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINS--------TILQLVLCNPFTRQFRYLPLL-NVSRT 130 (373)
Q Consensus 63 ~~~~~~d~~--~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~--------~~~~~~v~np~t~~w~~lp~~-~~~~~ 130 (373)
...+..|.. ...|.++ ..|..+|.....+.++|.||+++|.. ..++.++|||.+++|+++... |....
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~ 137 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLV 137 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccc
Confidence 444445544 4589998 46777888888999999999999851 135789999999999998643 33333
Q ss_pred CCeEEEEEcCCCCCCCCCceEEEEEeccCC--CC----------C-----------------CCCcccceEEEEECCCCc
Q 046684 131 NPAVGIVMEGPAQHGPFPNFRIYVAGGMSD--EP----------R-----------------GGATYESMVEMYDSRHDA 181 (373)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~--~~----------~-----------------~~~~~~~~~~~yd~~~~~ 181 (373)
.+..+.+.. .+|+++||.+. ++ . .+-.....+..|++.++.
T Consensus 138 G~~~~~~~~----------~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~ 207 (381)
T COG3055 138 GASTFSLNG----------TKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQ 207 (381)
T ss_pred cceeEecCC----------ceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccch
Confidence 334444431 58999998531 00 0 001124567889999999
Q ss_pred eeeecCCCccccccceeccCCceEEECCEEEEEEc-----CCceEEEEEECC--CCcEEecccCCCCCCCc-------ee
Q 046684 182 WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS-----ARAYSVIGFDIE--SNTWRELSAPMADRLEF-------AT 247 (373)
Q Consensus 182 W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg-----~~~~~i~~yd~~--~~~w~~~~~~~p~~~~~-------~~ 247 (373)
|+.+...| ...++.++++.-++++-++.| .+...+..++.. ..+|..+ .++|..... .-
T Consensus 208 W~~~G~~p------f~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l-~~lp~~~~~~~eGvAGaf 280 (381)
T COG3055 208 WRNLGENP------FYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKL-SDLPAPIGSNKEGVAGAF 280 (381)
T ss_pred hhhcCcCc------ccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeec-cCCCCCCCCCccccceec
Confidence 99998776 445555555555675666643 344555555554 6689998 555543321 11
Q ss_pred EEEECCEEEEEEeecCC---------------------ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684 248 LVSRNQKLTLIGGTCGG---------------------DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC 306 (373)
Q Consensus 248 ~~~~~g~l~~~gg~~~~---------------------~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~ 306 (373)
..-.++.+.+.||..-. +-+||.++. +.|+.+.++|..... -..
T Consensus 281 ~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l~Y-----------G~s 345 (381)
T COG3055 281 SGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGLAY-----------GVS 345 (381)
T ss_pred cceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCccc-----------eEE
Confidence 23346777777763210 057888876 999999999986632 444
Q ss_pred EecCCEEEEEEcCC
Q 046684 307 AAGNGAICLYREVG 320 (373)
Q Consensus 307 ~~~~~~i~~~~~~~ 320 (373)
+..++.||++||..
T Consensus 346 ~~~nn~vl~IGGE~ 359 (381)
T COG3055 346 LSYNNKVLLIGGET 359 (381)
T ss_pred EecCCcEEEEcccc
Confidence 55689999998764
No 31
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.06 E-value=9.4e-11 Score=72.30 Aligned_cols=43 Identities=35% Similarity=0.559 Sum_probs=37.5
Q ss_pred CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684 2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV 44 (373)
Q Consensus 2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~ 44 (373)
|..||+|++.+||+.||..|+.++..|||+|++++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 6899999999999999999999999999999999988866543
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.89 E-value=4.1e-09 Score=65.96 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=40.9
Q ss_pred CCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceeccCCCCCCC
Q 046684 84 PYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYLPLLNVSR 129 (373)
Q Consensus 84 ~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp~~~~~~ 129 (373)
||..+++++.++.||++||... .+++++|||.|++|+++|+||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5677889999999999999754 578999999999999999999875
No 33
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.84 E-value=7.8e-10 Score=68.69 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=36.0
Q ss_pred CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchh
Q 046684 2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS 43 (373)
Q Consensus 2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~ 43 (373)
|.+||+|++.+||.+|+++++++++.|||+|++++.++.+..
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 578999999999999999999999999999999999887654
No 34
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.75 E-value=4.6e-09 Score=62.80 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=36.5
Q ss_pred chHHHHHHHHhcCChhhHHHhhcccccchhccccccchh
Q 046684 5 LHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS 43 (373)
Q Consensus 5 Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~ 43 (373)
||+|++.+||++|+..++.+++.|||+|+.++.++.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887653
No 35
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.73 E-value=6e-07 Score=68.74 Aligned_cols=84 Identities=24% Similarity=0.509 Sum_probs=65.5
Q ss_pred EEECCEEEEEEc---CCceEEEEEECCCCcEEecccC--CCCCCCceeEEEECCEEEEEEeecCCc---eEEEEeecCCC
Q 046684 205 VCTRGMLYWITS---ARAYSVIGFDIESNTWRELSAP--MADRLEFATLVSRNQKLTLIGGTCGGD---ACVWELSEGGD 276 (373)
Q Consensus 205 ~~~~g~ly~~gg---~~~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~~~~~~g~l~~~gg~~~~~---~~i~~~~~~~~ 276 (373)
+++||.+|+++. .....|++||+++++|+.++.| .........++..+|+|.++....... +++|.++++ +
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~-~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY-E 80 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc-c
Confidence 679999999973 2468899999999999999554 223345667999999999998766543 999999985 5
Q ss_pred CCCeEEEEe-echh
Q 046684 277 DDIWCLIEK-VPIE 289 (373)
Q Consensus 277 ~~~W~~v~~-~p~~ 289 (373)
+++|++... +|..
T Consensus 81 k~~Wsk~~~~lp~~ 94 (129)
T PF08268_consen 81 KQEWSKKHIVLPPS 94 (129)
T ss_pred cceEEEEEEECChH
Confidence 689998865 5543
No 36
>PF13964 Kelch_6: Kelch motif
Probab=98.72 E-value=3.5e-08 Score=61.68 Aligned_cols=47 Identities=32% Similarity=0.588 Sum_probs=40.3
Q ss_pred CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC-CcccceEEEEECCCCceeeecCCCc
Q 046684 128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG-ATYESMVEMYDSRHDAWQIIGSMPV 190 (373)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~ 190 (373)
+|..+++++++ ++||++||.. . .....++++||+++++|+.+++||.
T Consensus 1 pR~~~s~v~~~-----------~~iyv~GG~~-----~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 1 PRYGHSAVVVG-----------GKIYVFGGYD-----NSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CCccCEEEEEC-----------CEEEEECCCC-----CCCCccccEEEEcCCCCcEEECCCCCC
Confidence 46677888887 9999999987 4 5677899999999999999999963
No 37
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.68 E-value=2.7e-06 Score=68.08 Aligned_cols=85 Identities=18% Similarity=0.362 Sum_probs=60.0
Q ss_pred EEECCEEEEEEcCCce----EEEEEECCCCcE-EecccCCCCCCC----ceeEEE-ECCEEEEEEeecCC-ceEEEEeec
Q 046684 205 VCTRGMLYWITSARAY----SVIGFDIESNTW-RELSAPMADRLE----FATLVS-RNQKLTLIGGTCGG-DACVWELSE 273 (373)
Q Consensus 205 ~~~~g~ly~~gg~~~~----~i~~yd~~~~~w-~~~~~~~p~~~~----~~~~~~-~~g~l~~~gg~~~~-~~~i~~~~~ 273 (373)
+++||.+||++..... .|++||+.++++ ..+ ++|.... ...+.+ .+++|.++...... .++||.+++
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~--~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSL--PLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEE--CCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEee
Confidence 7899999999843222 699999999999 666 4443322 334533 37899998643333 489999997
Q ss_pred CC-CCCCeEEEEeechhhh
Q 046684 274 GG-DDDIWCLIEKVPIEMG 291 (373)
Q Consensus 274 ~~-~~~~W~~v~~~p~~~~ 291 (373)
++ ...+|+++..++....
T Consensus 80 ~~~~~~SWtK~~~i~~~~~ 98 (164)
T PF07734_consen 80 YGYGKESWTKLFTIDLPPL 98 (164)
T ss_pred eccCcceEEEEEEEecCCC
Confidence 53 3789999988775544
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.58 E-value=5.8e-08 Score=59.88 Aligned_cols=46 Identities=35% Similarity=0.647 Sum_probs=38.7
Q ss_pred CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC-CcccceEEEEECCCCceeeecCCC
Q 046684 128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG-ATYESMVEMYDSRHDAWQIIGSMP 189 (373)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p 189 (373)
+|..+++++++ ++||++||.. . ......+++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~-----------~~iyv~GG~~-----~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVG-----------NKIYVIGGYD-----GNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEET-----------TEEEEEEEBE-----STSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEEC-----------CEEEEEeeec-----ccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 35667777777 9999999998 4 677889999999999999998874
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.48 E-value=3.6e-06 Score=71.91 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=39.3
Q ss_pred Ccch----HHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684 3 SNLH----LDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV 44 (373)
Q Consensus 3 ~~Lp----~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~ 44 (373)
+.|| +++.++||+.|...+|+.+..|||+|+++++++...+.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 4689 99999999999999999999999999999999988776
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.42 E-value=6.5e-07 Score=55.56 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=38.5
Q ss_pred CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCC
Q 046684 128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMP 189 (373)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 189 (373)
+|..+++++.+ +|||++||.. .........++++||+++++|+.++.+|
T Consensus 1 ~r~~hs~~~~~-----------~kiyv~GG~~--~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLD-----------GKIYVFGGYG--TDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEEC-----------CEEEEECCcc--cCCCCcccceeEEEECCCCEEeecCCCC
Confidence 35677777777 9999999991 0015566789999999999999998763
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.39 E-value=3.4e-07 Score=56.40 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCCceeEEeeCcEEEEeeCCCC----ceEEEEEcCcccceeccCCCC
Q 046684 84 PYPVRPVSSIGSFLLLRPINST----ILQLVLCNPFTRQFRYLPLLN 126 (373)
Q Consensus 84 ~~~~~~~~~~~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp~~~ 126 (373)
||..+++++.++.||++||... .+++++||+.+++|+++|+||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 4677889999999999999733 567999999999999999886
No 42
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.37 E-value=1.4e-05 Score=67.17 Aligned_cols=159 Identities=10% Similarity=0.085 Sum_probs=104.2
Q ss_pred cceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC--ceEEEEEECCC----CcEEecccCCCCC
Q 046684 169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR--AYSVIGFDIES----NTWRELSAPMADR 242 (373)
Q Consensus 169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--~~~i~~yd~~~----~~w~~~~~~~p~~ 242 (373)
...-.+||+.+++++.+... ....+...+..-||.+...||.. ...+..|++.+ ..|.+....|...
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~-------td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~ 117 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ-------TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG 117 (243)
T ss_pred eEEEEEEecCCCcEEeccCC-------CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC
Confidence 34467899999999987654 33445555566789999998653 46688899876 6798874557777
Q ss_pred CCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCc
Q 046684 243 LEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGL 321 (373)
Q Consensus 243 ~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 321 (373)
|-..+...+ +|+++++||......+.|.... .......+.-+........ ....++....-+|+||++...
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~--~~~~~~~~~~l~~~~~~~~----~nlYP~~~llPdG~lFi~an~-- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG--PGPGPVTLPFLSQTSDTLP----NNLYPFVHLLPDGNLFIFANR-- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcccccCCcc--CCCCceeeecchhhhccCc----cccCceEEEcCCCCEEEEEcC--
Confidence 876666655 8999999998855555554322 1111111111211100000 112368888889999999876
Q ss_pred cEEEEEccccCCcccE-EEecccccC
Q 046684 322 GMIIWREDEDKRKWEW-VWVGGCCLT 346 (373)
Q Consensus 322 ~~~~yd~~~~~~~~~W-~~~~~~~~~ 346 (373)
.-.+||.. ++ ++ +.+|..|-.
T Consensus 190 ~s~i~d~~--~n--~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 GSIIYDYK--TN--TVVRTLPDLPGG 211 (243)
T ss_pred CcEEEeCC--CC--eEEeeCCCCCCC
Confidence 58889999 99 76 667776643
No 43
>smart00612 Kelch Kelch domain.
Probab=98.31 E-value=1.3e-06 Score=53.72 Aligned_cols=47 Identities=34% Similarity=0.636 Sum_probs=37.1
Q ss_pred EEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECC
Q 046684 151 RIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG 209 (373)
Q Consensus 151 kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g 209 (373)
+||++||.. .......+++||+++++|+.++++| ..+..++++.++|
T Consensus 1 ~iyv~GG~~-----~~~~~~~v~~yd~~~~~W~~~~~~~-------~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFD-----GGQRLKSVEVYDPETNKWTPLPSMP-------TPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCC-----CCceeeeEEEECCCCCeEccCCCCC-------CccccceEEEeCC
Confidence 489999986 4456788999999999999999884 4566666666654
No 44
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.31 E-value=0.00036 Score=59.52 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=120.2
Q ss_pred eEEEEeCCCC--CccccCCCCCCCCcee--EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCCeEEEE
Q 046684 64 CCYVHNPVSD--KWHVLSLDFLPYPVRP--VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIV 137 (373)
Q Consensus 64 ~~~~~d~~~~--~w~~~~~~~~~~~~~~--~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~ 137 (373)
.+.++|+.+. .|..-... ...... ....++.+|+..+ ...++.+|+.|++ |+.-. +...... ....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~ 75 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGRVYVASG---DGNLYALDAKTGKVLWRFDL--PGPISGA-PVVD 75 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTEEEEEET---TSEEEEEETTTSEEEEEEEC--SSCGGSG-EEEE
T ss_pred EEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCEEEEEcC---CCEEEEEECCCCCEEEEeec--cccccce-eeec
Confidence 4556777554 35542111 122222 3448999999865 6899999999987 54322 2221111 2222
Q ss_pred EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--ee-eecCCCccccccceeccCCceEEECCEEEEE
Q 046684 138 MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQ-IIGSMPVEFAVRLTVWTPNESVCTRGMLYWI 214 (373)
Q Consensus 138 ~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~-~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~ 214 (373)
+ +++|+.... ..+..+|..+++ |+ .....|. .........++.++.+|+.
T Consensus 76 ~-----------~~v~v~~~~-----------~~l~~~d~~tG~~~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 128 (238)
T PF13360_consen 76 G-----------GRVYVGTSD-----------GSLYALDAKTGKVLWSIYLTSSPP-----AGVRSSSSPAVDGDRLYVG 128 (238)
T ss_dssp T-----------TEEEEEETT-----------SEEEEEETTTSCEEEEEEE-SSCT-----CSTB--SEEEEETTEEEEE
T ss_pred c-----------cccccccce-----------eeeEecccCCcceeeeeccccccc-----cccccccCceEecCEEEEE
Confidence 2 778876522 278999987776 98 4443221 1112233344556777776
Q ss_pred EcCCceEEEEEECCCCc--EEecccCCCCCCC--------ceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684 215 TSARAYSVIGFDIESNT--WRELSAPMADRLE--------FATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE 284 (373)
Q Consensus 215 gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~--------~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~ 284 (373)
. ....+.++|+++++ |..- ...+.... ....+..+|.+|+...... -+.+ +... ....|+..
T Consensus 129 ~--~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~-d~~t--g~~~w~~~- 200 (238)
T PF13360_consen 129 T--SSGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAV-DLAT--GEKLWSKP- 200 (238)
T ss_dssp E--TCSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEE-ETTT--TEEEEEEC-
T ss_pred e--ccCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEE-ECCC--CCEEEEec-
Confidence 3 36789999999774 6654 33322111 1233444677777654332 1233 5544 22236222
Q ss_pred eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEE
Q 046684 285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWV 338 (373)
Q Consensus 285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~ 338 (373)
+.. . .......++.||+.. ..+.+.++|++ +++..|+
T Consensus 201 -~~~-~------------~~~~~~~~~~l~~~~-~~~~l~~~d~~--tG~~~W~ 237 (238)
T PF13360_consen 201 -ISG-I------------YSLPSVDGGTLYVTS-SDGRLYALDLK--TGKVVWQ 237 (238)
T ss_dssp -SS--E------------CECEECCCTEEEEEE-TTTEEEEEETT--TTEEEEE
T ss_pred -CCC-c------------cCCceeeCCEEEEEe-CCCEEEEEECC--CCCEEeE
Confidence 221 1 133567788999887 56789999999 9977786
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.27 E-value=1.3e-06 Score=54.31 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC-cccceEEEEECCCCceeeecCCC
Q 046684 128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA-TYESMVEMYDSRHDAWQIIGSMP 189 (373)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p 189 (373)
+|..++++...+ ++||++||.. .. ....++++||.++++|++++++|
T Consensus 1 pR~~h~~~~~~~----------~~i~v~GG~~-----~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGD----------NSIYVFGGRD-----SSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-T----------TEEEEE--EE-----E-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeC----------CeEEEECCCC-----CCCcccCCEEEEECCCCEEEECCCCC
Confidence 366677776642 7899999987 43 57889999999999999998775
No 46
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.23 E-value=2.1e-06 Score=76.93 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=121.4
Q ss_pred cCcccceeccCCCC----------CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCce
Q 046684 113 NPFTRQFRYLPLLN----------VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW 182 (373)
Q Consensus 113 np~t~~w~~lp~~~----------~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W 182 (373)
-+.+-.|.++++.. ..|..+-++... .+ +.||+.||.+ +.....++|.|+-..+.|
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~----~~-----~CiYLYGGWd-----G~~~l~DFW~Y~v~e~~W 300 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDV----QT-----ECVYLYGGWD-----GTQDLADFWAYSVKENQW 300 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeC----CC-----cEEEEecCcc-----cchhHHHHHhhcCCccee
Confidence 45677788877543 346666655443 11 6899999998 888889999999999999
Q ss_pred eeecCCCccccccceeccCCceEEECC--EEEEEEc----------CCceEEEEEECCCCcEEecccCC-----CCCCCc
Q 046684 183 QIIGSMPVEFAVRLTVWTPNESVCTRG--MLYWITS----------ARAYSVIGFDIESNTWRELSAPM-----ADRLEF 245 (373)
Q Consensus 183 ~~~~~~p~~~~~~~~~~~~~~~~~~~g--~ly~~gg----------~~~~~i~~yd~~~~~w~~~~~~~-----p~~~~~ 245 (373)
..+..-... +..|..+.++.... ++|.+|. ....+++.||..++.|..+.... |.....
T Consensus 301 ~~iN~~t~~----PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD 376 (723)
T KOG2437|consen 301 TCINRDTEG----PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD 376 (723)
T ss_pred EEeecCCCC----CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeec
Confidence 988654311 33455566665554 8999972 12578999999999999883322 223345
Q ss_pred eeEEEECCE--EEEEEeecCCc-----eEEEEeecCCCCCCeEEEEeechhhhhhhcCCC--CCCCceEEEecCCEEEEE
Q 046684 246 ATLVSRNQK--LTLIGGTCGGD-----ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGK--ASWGGTRCAAGNGAICLY 316 (373)
Q Consensus 246 ~~~~~~~g~--l~~~gg~~~~~-----~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~ 316 (373)
+++++.+++ ||++||..-.. --.|.++. ....|....+-....-.. .... ..-.+......+..+|++
T Consensus 377 HqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~--~~~~w~~l~e~~~~~~~v-vE~~~sR~ghcmE~~~~n~~ly~f 453 (723)
T KOG2437|consen 377 HQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNC--QCQTWKLLREDSCNAGPV-VEDIQSRIGHCMEFHSKNRCLYVF 453 (723)
T ss_pred ceeeEecCcceEEEecCeeccCCCccccceEEEec--CCccHHHHHHHHhhcCcc-hhHHHHHHHHHHHhcCCCCeEEec
Confidence 678887777 99999863221 12444443 446776654311100000 0000 000134445567788888
Q ss_pred EcCCc-----cEEEEEccccCC
Q 046684 317 REVGL-----GMIIWREDEDKR 333 (373)
Q Consensus 317 ~~~~~-----~~~~yd~~~~~~ 333 (373)
||... -.+.||+..|+.
T Consensus 454 ggq~s~~El~L~f~y~I~~E~~ 475 (723)
T KOG2437|consen 454 GGQRSKTELNLFFSYDIDSEHV 475 (723)
T ss_pred cCcccceEEeehhcceeccccc
Confidence 76542 245576664443
No 47
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.16 E-value=2.3e-05 Score=65.94 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=97.2
Q ss_pred eEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCC-CCceEEEEEcCcc----cceeccC-CCCCCCCCCeEEEE
Q 046684 64 CCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPIN-STILQLVLCNPFT----RQFRYLP-LLNVSRTNPAVGIV 137 (373)
Q Consensus 64 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~-~~~~~~~v~np~t----~~w~~lp-~~~~~~~~~~~~~~ 137 (373)
....||+.+++++.+....-....-.....||.+...||. .+.+.+..|+|.+ ..|.+.+ .|..+|++++...+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 3445999999998875443333332344558888888886 4456788899886 6798876 58999999999888
Q ss_pred EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCC-----ceeeecCCCccccccceeccCCceEEECCEEE
Q 046684 138 MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHD-----AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLY 212 (373)
Q Consensus 138 ~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly 212 (373)
.+ ++++|+||.. ....|.+..... .|..+...... .....+...-+.-+|+|+
T Consensus 127 ~D----------G~vlIvGG~~---------~~t~E~~P~~~~~~~~~~~~~l~~~~~~---~~~nlYP~~~llPdG~lF 184 (243)
T PF07250_consen 127 PD----------GRVLIVGGSN---------NPTYEFWPPKGPGPGPVTLPFLSQTSDT---LPNNLYPFVHLLPDGNLF 184 (243)
T ss_pred CC----------CCEEEEeCcC---------CCcccccCCccCCCCceeeecchhhhcc---CccccCceEEEcCCCCEE
Confidence 75 8899999875 223455544221 12222211100 012233333455689999
Q ss_pred EEEcCCceEEEEEECCCCcE-EecccCCCC
Q 046684 213 WITSARAYSVIGFDIESNTW-RELSAPMAD 241 (373)
Q Consensus 213 ~~gg~~~~~i~~yd~~~~~w-~~~~~~~p~ 241 (373)
+++. ..-..||..++++ +.+ ..+|.
T Consensus 185 i~an---~~s~i~d~~~n~v~~~l-P~lPg 210 (243)
T PF07250_consen 185 IFAN---RGSIIYDYKTNTVVRTL-PDLPG 210 (243)
T ss_pred EEEc---CCcEEEeCCCCeEEeeC-CCCCC
Confidence 9963 3567789999987 666 45554
No 48
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.10 E-value=5.3e-06 Score=51.43 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=37.1
Q ss_pred CcEEEEeeCCC-----CceEEEEEcCcccceeccCCCCCCCCCCeEEE
Q 046684 94 GSFLLLRPINS-----TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGI 136 (373)
Q Consensus 94 ~g~l~~~gg~~-----~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~ 136 (373)
|+.+|++||.. ..+++++||+.+++|++++++|.+|..+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 57899999875 14579999999999999999999999988875
No 49
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.07 E-value=4e-06 Score=52.05 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=27.3
Q ss_pred CCCceeEEee-CcEEEEeeCCCC----ceEEEEEcCcccceeccCCCC
Q 046684 84 PYPVRPVSSI-GSFLLLRPINST----ILQLVLCNPFTRQFRYLPLLN 126 (373)
Q Consensus 84 ~~~~~~~~~~-~g~l~~~gg~~~----~~~~~v~np~t~~w~~lp~~~ 126 (373)
||..++++.. ++.||++||... .+++++||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4667777777 589999999733 457999999999999998876
No 50
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.04 E-value=1.2e-05 Score=49.74 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=36.6
Q ss_pred CCCceeEEeeCcEEEEeeCC---C---CceEEEEEcCcccceeccCCCC
Q 046684 84 PYPVRPVSSIGSFLLLRPIN---S---TILQLVLCNPFTRQFRYLPLLN 126 (373)
Q Consensus 84 ~~~~~~~~~~~g~l~~~gg~---~---~~~~~~v~np~t~~w~~lp~~~ 126 (373)
+|..++++..++.||++||. . ..+++++||+.|++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 46778899999999999997 1 2457999999999999998874
No 51
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.95 E-value=2e-05 Score=48.84 Aligned_cols=47 Identities=28% Similarity=0.534 Sum_probs=36.3
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC 206 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~ 206 (373)
+++|++||... ......+++++||+.+++|+++..+| .+|..+++++
T Consensus 2 ~~~~vfGG~~~---~~~~~~nd~~~~~~~~~~W~~~~~~P-------~~R~~h~~~~ 48 (49)
T PF13415_consen 2 NKLYVFGGYDD---DGGTRLNDVWVFDLDTNTWTRIGDLP-------PPRSGHTATV 48 (49)
T ss_pred CEEEEECCcCC---CCCCEecCEEEEECCCCEEEECCCCC-------CCccceEEEE
Confidence 78999999862 13556789999999999999997774 4566666554
No 52
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=97.94 E-value=8e-06 Score=73.31 Aligned_cols=151 Identities=14% Similarity=0.217 Sum_probs=99.4
Q ss_pred CCceeeecCCC---ccccccceeccCCceEEECC--EEEEEEcCC----ceEEEEEECCCCcEEecccC--CCCCCCcee
Q 046684 179 HDAWQIIGSMP---VEFAVRLTVWTPNESVCTRG--MLYWITSAR----AYSVIGFDIESNTWRELSAP--MADRLEFAT 247 (373)
Q Consensus 179 ~~~W~~~~~~p---~~~~~~~~~~~~~~~~~~~g--~ly~~gg~~----~~~i~~yd~~~~~w~~~~~~--~p~~~~~~~ 247 (373)
+-.|.++.... ..+..-+..|.++.++.-.+ ++|..||.. ..+.++|+...++|..+... .|..|..+.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 35688775532 01112245678888887765 999998643 56789999999999987332 366777777
Q ss_pred EEEE--CCEEEEEEeecCCc--------eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecC--CEEEE
Q 046684 248 LVSR--NQKLTLIGGTCGGD--------ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGN--GAICL 315 (373)
Q Consensus 248 ~~~~--~g~l~~~gg~~~~~--------~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~i~~ 315 (373)
++.. ..+||++|.+-+.. .++|.++- +++.|..+..-...- ++......+.+++++ +.||+
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi--~~~~W~~ls~dt~~d-----GGP~~vfDHqM~Vd~~k~~iyV 390 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDI--DTNTWMLLSEDTAAD-----GGPKLVFDHQMCVDSEKHMIYV 390 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEec--CCceeEEeccccccc-----CCcceeecceeeEecCcceEEE
Confidence 6654 45899998653321 67999987 889999875422110 011111124445554 45999
Q ss_pred EEcCC--------ccEEEEEccccCCcccEEEe
Q 046684 316 YREVG--------LGMIIWREDEDKRKWEWVWV 340 (373)
Q Consensus 316 ~~~~~--------~~~~~yd~~~~~~~~~W~~~ 340 (373)
+||.. ..++.||.. .. .|+.+
T Consensus 391 fGGr~~~~~e~~f~GLYaf~~~--~~--~w~~l 419 (723)
T KOG2437|consen 391 FGGRILTCNEPQFSGLYAFNCQ--CQ--TWKLL 419 (723)
T ss_pred ecCeeccCCCccccceEEEecC--Cc--cHHHH
Confidence 99753 569999999 88 88765
No 53
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.94 E-value=0.0016 Score=61.93 Aligned_cols=275 Identities=15% Similarity=0.107 Sum_probs=146.4
Q ss_pred CcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh-ccC---CC---CceEEEEEec---CCCeeEEE-EeCC
Q 046684 3 SNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV-SQH---RR---PAWFLALPTR---NRGLCCYV-HNPV 71 (373)
Q Consensus 3 ~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~-~~~---~~---~~~l~~~~~~---~~~~~~~~-~d~~ 71 (373)
+.||.|+...||..|+.++++.++.||+.|+.++.+...... .+. .. ..+-...... .....++. ..-.
T Consensus 109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~~ 188 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFRL 188 (537)
T ss_pred hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhhc
Confidence 568999999999999999999999999999999988766653 221 11 1111110000 00001100 1122
Q ss_pred CCCccccCCCC----CC---CCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCC
Q 046684 72 SDKWHVLSLDF----LP---YPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQH 144 (373)
Q Consensus 72 ~~~w~~~~~~~----~~---~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~ 144 (373)
.+.|....... .+ ....+....+|.+..... ...+.+||..++.-...+.....-.-.++.+.. +
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~---~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~---- 260 (537)
T KOG0274|consen 189 SKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSD---DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-G---- 260 (537)
T ss_pred cccccccccccceeecccCcchhhhheeecCeEEecCC---CceeEEeecccceEEEeeccCCCCCceeEEEec-C----
Confidence 23444332211 11 111122233444443333 456679999888765443222222222333331 0
Q ss_pred CCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEE
Q 046684 145 GPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIG 224 (373)
Q Consensus 145 ~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~ 224 (373)
..+++.|-.+ ..+.++|..++.=...-.. ......+......+..+|.....|.+
T Consensus 261 -----~~~lvsgS~D----------~t~rvWd~~sg~C~~~l~g----------h~stv~~~~~~~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 261 -----GDKLVSGSTD----------KTERVWDCSTGECTHSLQG----------HTSSVRCLTIDPFLLVSGSRDNTVKV 315 (537)
T ss_pred -----CCEEEEEecC----------CcEEeEecCCCcEEEEecC----------CCceEEEEEccCceEeeccCCceEEE
Confidence 2334444333 4566777666654433221 01111123345555565677889999
Q ss_pred EECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce
Q 046684 225 FDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT 304 (373)
Q Consensus 225 yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~ 304 (373)
+|..+++-..+ .-- +......+.+++.+.+.|..++ .+.+|+... -+.+..+..-.. ..
T Consensus 316 W~v~n~~~l~l-~~~--h~~~V~~v~~~~~~lvsgs~d~-~v~VW~~~~------~~cl~sl~gH~~-----------~V 374 (537)
T KOG0274|consen 316 WDVTNGACLNL-LRG--HTGPVNCVQLDEPLLVSGSYDG-TVKVWDPRT------GKCLKSLSGHTG-----------RV 374 (537)
T ss_pred EeccCcceEEE-ecc--ccccEEEEEecCCEEEEEecCc-eEEEEEhhh------ceeeeeecCCcc-----------eE
Confidence 99998776655 111 2233345666777777777666 689999853 344444443111 13
Q ss_pred EEEecCC-EEEEEEcCCccEEEEEccccCC
Q 046684 305 RCAAGNG-AICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 305 ~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.+...++ ..++-|..+..+.++|++ +.
T Consensus 375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~--~~ 402 (537)
T KOG0274|consen 375 YSLIVDSENRLLSGSLDTTIKVWDLR--TK 402 (537)
T ss_pred EEEEecCcceEEeeeeccceEeecCC--ch
Confidence 3334444 666666666679999998 66
No 54
>smart00612 Kelch Kelch domain.
Probab=97.84 E-value=4.1e-05 Score=46.83 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=34.9
Q ss_pred EEEeeCCC---CceEEEEEcCcccceeccCCCCCCCCCCeEEEEE
Q 046684 97 LLLRPINS---TILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVM 138 (373)
Q Consensus 97 l~~~gg~~---~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~ 138 (373)
||++||.. ...++++|||.+++|..+++|+.+|..+++++++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence 78888863 2467899999999999999999999888877653
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.81 E-value=0.014 Score=53.97 Aligned_cols=218 Identities=13% Similarity=0.065 Sum_probs=124.3
Q ss_pred eeEEEEeCCCC--Ccccc-CCC--CCC-----CCceeEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCC
Q 046684 63 LCCYVHNPVSD--KWHVL-SLD--FLP-----YPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRT 130 (373)
Q Consensus 63 ~~~~~~d~~~~--~w~~~-~~~--~~~-----~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~ 130 (373)
..+.++|..+. .|..- ... ... ......+..++.||+.+. ...++.+|+.|++ |+.- ++...
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~--~~~~~- 152 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQVYALNAEDGEVAWQTK--VAGEA- 152 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---CCEEEEEECCCCCCccccc--CCCce-
Confidence 46777888765 47643 210 001 112235667899998765 4679999999986 6542 11111
Q ss_pred CCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEEC
Q 046684 131 NPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTR 208 (373)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~ 208 (373)
..+..+.+ +++|+..+. ..++.+|.++++ |+.-...|. ...+...+.+..+
T Consensus 153 ~ssP~v~~-----------~~v~v~~~~-----------g~l~ald~~tG~~~W~~~~~~~~-----~~~~~~~sP~v~~ 205 (394)
T PRK11138 153 LSRPVVSD-----------GLVLVHTSN-----------GMLQALNESDGAVKWTVNLDVPS-----LTLRGESAPATAF 205 (394)
T ss_pred ecCCEEEC-----------CEEEEECCC-----------CEEEEEEccCCCEeeeecCCCCc-----ccccCCCCCEEEC
Confidence 11112222 677764322 368999998876 876544321 1112223446677
Q ss_pred CEEEEEEcCCceEEEEEECCCC--cEEecccCCCCC--------CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCC
Q 046684 209 GMLYWITSARAYSVIGFDIESN--TWRELSAPMADR--------LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDD 278 (373)
Q Consensus 209 g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~--------~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~ 278 (373)
|.+|+.. ....+.++|++++ .|+.- ...+.. .....-+..++.+|+.+.. ..+..+++.. .+.
T Consensus 206 ~~v~~~~--~~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~--g~l~ald~~t--G~~ 278 (394)
T PRK11138 206 GGAIVGG--DNGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN--GNLVALDLRS--GQI 278 (394)
T ss_pred CEEEEEc--CCCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEECCEEEEEEcC--CeEEEEECCC--CCE
Confidence 8887763 4567999999876 47642 111111 0112345568888886532 2345555554 345
Q ss_pred CeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEE
Q 046684 279 IWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVW 339 (373)
Q Consensus 279 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~ 339 (373)
.|+.- ... ....+..++.||+... .+.++++|.+ +++..|+.
T Consensus 279 ~W~~~--~~~--------------~~~~~~~~~~vy~~~~-~g~l~ald~~--tG~~~W~~ 320 (394)
T PRK11138 279 VWKRE--YGS--------------VNDFAVDGGRIYLVDQ-NDRVYALDTR--GGVELWSQ 320 (394)
T ss_pred EEeec--CCC--------------ccCcEEECCEEEEEcC-CCeEEEEECC--CCcEEEcc
Confidence 68752 111 1123456889998763 4589999999 88667864
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.2e-05 Score=68.15 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=40.4
Q ss_pred CCcchHHHHHHHHhcCChhhHHHhhcccccchhccccccchhh
Q 046684 2 WSNLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHSV 44 (373)
Q Consensus 2 ~~~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~~ 44 (373)
|..||||+++.||+.||.|+|.++..|||+|+++.++...+..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 7889999999999999999999999999999999998877765
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.74 E-value=0.0095 Score=55.08 Aligned_cols=200 Identities=11% Similarity=0.060 Sum_probs=111.7
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccc--eec-cCCCCC-------CCCCCeEEEEEcCCCCCCCCCceEEEEEeccC
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRY-LPLLNV-------SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMS 159 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~-lp~~~~-------~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~ 159 (373)
.+..+|.||+.+. ...++.+|..|++ |+. ++.... .......++.+ ++||+.+ .+
T Consensus 65 Pvv~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------~~v~v~~-~~ 129 (394)
T PRK11138 65 PAVAYNKVYAADR---AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG-----------GKVYIGS-EK 129 (394)
T ss_pred cEEECCEEEEECC---CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC-----------CEEEEEc-CC
Confidence 4567999999876 4678999999876 754 332100 01111122222 7788643 22
Q ss_pred CCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc--EEec
Q 046684 160 DEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT--WREL 235 (373)
Q Consensus 160 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~--w~~~ 235 (373)
..++.+|.++++ |+.-..-+ ...+.++.++.+|+.. ....++++|+++++ |+.-
T Consensus 130 ----------g~l~ald~~tG~~~W~~~~~~~----------~~ssP~v~~~~v~v~~--~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 130 ----------GQVYALNAEDGEVAWQTKVAGE----------ALSRPVVSDGLVLVHT--SNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred ----------CEEEEEECCCCCCcccccCCCc----------eecCCEEECCEEEEEC--CCCEEEEEEccCCCEeeeec
Confidence 368999988765 87543221 1123466789988863 35689999998775 7764
Q ss_pred ccCCCCC--CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh--hhhcCCCCCCCceEEEecCC
Q 046684 236 SAPMADR--LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG--MRLSGGKASWGGTRCAAGNG 311 (373)
Q Consensus 236 ~~~~p~~--~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (373)
...|.. +....-+..+|.+|+..+ ...+...+.++ ....|+.-...+.... ..+... ...-+..++
T Consensus 188 -~~~~~~~~~~~~sP~v~~~~v~~~~~--~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~-----~~sP~v~~~ 257 (394)
T PRK11138 188 -LDVPSLTLRGESAPATAFGGAIVGGD--NGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDV-----DTTPVVVGG 257 (394)
T ss_pred -CCCCcccccCCCCCEEECCEEEEEcC--CCEEEEEEccC--ChhhheeccccCCCccchhccccc-----CCCcEEECC
Confidence 222211 111233445677666443 22234445544 4456875322221110 000000 112234578
Q ss_pred EEEEEEcCCccEEEEEccccCCcccEEE
Q 046684 312 AICLYREVGLGMIIWREDEDKRKWEWVW 339 (373)
Q Consensus 312 ~i~~~~~~~~~~~~yd~~~~~~~~~W~~ 339 (373)
.+|+.+. .+.+.++|++ +++..|+.
T Consensus 258 ~vy~~~~-~g~l~ald~~--tG~~~W~~ 282 (394)
T PRK11138 258 VVYALAY-NGNLVALDLR--SGQIVWKR 282 (394)
T ss_pred EEEEEEc-CCeEEEEECC--CCCEEEee
Confidence 8888653 4589999999 88777875
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.72 E-value=0.029 Score=51.57 Aligned_cols=215 Identities=10% Similarity=0.085 Sum_probs=120.5
Q ss_pred eeEEEEeCCCC--CccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCCeEEEEE
Q 046684 63 LCCYVHNPVSD--KWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIVM 138 (373)
Q Consensus 63 ~~~~~~d~~~~--~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~ 138 (373)
..++++|..+. .|..-.... .....+..++.+|+... ...++.+|+.|++ |+.- ++... .....+.+
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~~---~~~~p~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~--~~~~~-~~~p~v~~ 145 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDER---LSGGVGADGGLVFVGTE---KGEVIALDAEDGKELWRAK--LSSEV-LSPPLVAN 145 (377)
T ss_pred CeEEEEEccCCcEeeeecCCCC---cccceEEcCCEEEEEcC---CCEEEEEECCCCcEeeeec--cCcee-ecCCEEEC
Confidence 46788998765 475431111 11234556888888665 4689999998886 6542 11111 01111222
Q ss_pred cCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEc
Q 046684 139 EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS 216 (373)
Q Consensus 139 ~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg 216 (373)
+++|+..+. ..++.+|.++++ |+.-...+. .........+..++.+|+.
T Consensus 146 -----------~~v~v~~~~-----------g~l~a~d~~tG~~~W~~~~~~~~-----~~~~~~~sp~~~~~~v~~~-- 196 (377)
T TIGR03300 146 -----------GLVVVRTND-----------GRLTALDAATGERLWTYSRVTPA-----LTLRGSASPVIADGGVLVG-- 196 (377)
T ss_pred -----------CEEEEECCC-----------CeEEEEEcCCCceeeEEccCCCc-----eeecCCCCCEEECCEEEEE--
Confidence 666664322 358899988765 775433221 1112223446677777654
Q ss_pred CCceEEEEEECCCC--cEEecccCCCCCC--------CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684 217 ARAYSVIGFDIESN--TWRELSAPMADRL--------EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV 286 (373)
Q Consensus 217 ~~~~~i~~yd~~~~--~w~~~~~~~p~~~--------~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~ 286 (373)
.....+.++|++++ .|+.- ...+... .....+..++.+|+... ...+..++.++ .+..|+.- .
T Consensus 197 ~~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~--~g~l~a~d~~t--G~~~W~~~--~ 269 (377)
T TIGR03300 197 FAGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVVDGGQVYAVSY--QGRVAALDLRS--GRVLWKRD--A 269 (377)
T ss_pred CCCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEEECCEEEEEEc--CCEEEEEECCC--CcEEEeec--c
Confidence 34568999999876 47543 1211110 11233445788888653 22356666655 44557653 1
Q ss_pred chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEE
Q 046684 287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVW 339 (373)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~ 339 (373)
+ . ....+..++.||+.. ..+.+.++|.+ +++..|+.
T Consensus 270 ~--~------------~~~p~~~~~~vyv~~-~~G~l~~~d~~--tG~~~W~~ 305 (377)
T TIGR03300 270 S--S------------YQGPAVDDNRLYVTD-ADGVVVALDRR--SGSELWKN 305 (377)
T ss_pred C--C------------ccCceEeCCEEEEEC-CCCeEEEEECC--CCcEEEcc
Confidence 1 0 122335688888865 44579999999 88667875
No 59
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.72 E-value=0.023 Score=48.24 Aligned_cols=190 Identities=9% Similarity=0.042 Sum_probs=103.0
Q ss_pred eeEEEEeCCCCCccccCCCCCCCC---c--eeEEe---eCcE-EEEeeCC---CCceEEEEEcCcccceeccCCCCCC-C
Q 046684 63 LCCYVHNPVSDKWHVLSLDFLPYP---V--RPVSS---IGSF-LLLRPIN---STILQLVLCNPFTRQFRYLPLLNVS-R 129 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~~~~~~~~~---~--~~~~~---~~g~-l~~~gg~---~~~~~~~v~np~t~~w~~lp~~~~~-~ 129 (373)
..+.++||.++.|..+|.+..+.. . .+++. .+.. |..+... .....+.+|+..|++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 467779999999999976543211 1 11111 1111 2222211 1234678999999999998643211 1
Q ss_pred CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceee-ecCCCccccccceeccCCceEEEC
Q 046684 130 TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI-IGSMPVEFAVRLTVWTPNESVCTR 208 (373)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~~~~~~ 208 (373)
.....+.++ +.+|-+.... .......+..||..+++|++ ++ +|... .........+.++
T Consensus 94 ~~~~~v~~~-----------G~lyw~~~~~-----~~~~~~~IvsFDl~~E~f~~~i~-~P~~~---~~~~~~~~L~~~~ 153 (230)
T TIGR01640 94 LKSRGVCIN-----------GVLYYLAYTL-----KTNPDYFIVSFDVSSERFKEFIP-LPCGN---SDSVDYLSLINYK 153 (230)
T ss_pred ccCCeEEEC-----------CEEEEEEEEC-----CCCCcEEEEEEEcccceEeeeee-cCccc---cccccceEEEEEC
Confidence 111133343 7777776432 11112368889999999996 43 34210 1111233457788
Q ss_pred CEEEEEEcC---CceEEEEEE-CCCCcEEecccCCC--C-C--CC--ceeEEEECCEEEEEEeecCCc-eEEEEeec
Q 046684 209 GMLYWITSA---RAYSVIGFD-IESNTWRELSAPMA--D-R--LE--FATLVSRNQKLTLIGGTCGGD-ACVWELSE 273 (373)
Q Consensus 209 g~ly~~gg~---~~~~i~~yd-~~~~~w~~~~~~~p--~-~--~~--~~~~~~~~g~l~~~gg~~~~~-~~i~~~~~ 273 (373)
|+|.++... ..-.|+..+ -..++|++. ...+ . . .. ....+..+|+|++........ +.+|++++
T Consensus 154 G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~-~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~ 229 (230)
T TIGR01640 154 GKLAVLKQKKDTNNFDLWVLNDAGKQEWSKL-FTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE 229 (230)
T ss_pred CEEEEEEecCCCCcEEEEEECCCCCCceeEE-EEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence 999988632 234677765 345679864 2222 1 1 11 123345578888876532122 66777653
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.54 E-value=0.015 Score=52.33 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=77.7
Q ss_pred EeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccc
Q 046684 91 SSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYES 170 (373)
Q Consensus 91 ~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~ 170 (373)
+..+..|+.++. .....+||+.|..-..+|.++.+.....+..++ ++||++...............
T Consensus 73 al~gskIv~~d~---~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG-----------~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 73 ALHGSKIVAVDQ---SGRTLVYDTDTRAVATGPRLHSPKRCPISVSVG-----------DKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred EecCCeEEEEcC---CCCeEEEECCCCeEeccCCCCCCCcceEEEEeC-----------CeEEEeeccCccccccCccce
Confidence 335888888876 366999999999999999988776666555555 779999765311000000001
Q ss_pred eEEEE--E--------CCCCceeeecCCCccccccceecc----CCceEEECC-EEEEEEcCCceEEEEEECCCCcEEec
Q 046684 171 MVEMY--D--------SRHDAWQIIGSMPVEFAVRLTVWT----PNESVCTRG-MLYWITSARAYSVIGFDIESNTWREL 235 (373)
Q Consensus 171 ~~~~y--d--------~~~~~W~~~~~~p~~~~~~~~~~~----~~~~~~~~g-~ly~~gg~~~~~i~~yd~~~~~w~~~ 235 (373)
.+|++ + ....+|+.+++.|-. ..... -.+-++++| .|++-........++||+++.+|+..
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~----~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPPPPFV----RDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCCCCcc----ccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 45554 3 223467887764421 11111 223345544 56553222124799999999999998
Q ss_pred ccC
Q 046684 236 SAP 238 (373)
Q Consensus 236 ~~~ 238 (373)
..
T Consensus 215 -Gd 216 (342)
T PF07893_consen 215 -GD 216 (342)
T ss_pred -cc
Confidence 44
No 61
>PLN02772 guanylate kinase
Probab=97.39 E-value=0.0014 Score=58.91 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=57.9
Q ss_pred eccCCceEEECCEEEEEEcCC-----ceEEEEEECCCCcEEecc--cCCCCCCCceeEEEE-CCEEEEEEeecCCceEEE
Q 046684 198 VWTPNESVCTRGMLYWITSAR-----AYSVIGFDIESNTWRELS--APMADRLEFATLVSR-NQKLTLIGGTCGGDACVW 269 (373)
Q Consensus 198 ~~~~~~~~~~~g~ly~~gg~~-----~~~i~~yd~~~~~w~~~~--~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~ 269 (373)
++..++++.+++++|++||.. .+.+++||..+.+|.... .+.|.++.+++.+++ +++|+++.+....+=.+|
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceE
Confidence 345577789999999998632 358999999999998652 456888888888888 689999985443333688
Q ss_pred Eeec
Q 046684 270 ELSE 273 (373)
Q Consensus 270 ~~~~ 273 (373)
-|+-
T Consensus 104 ~l~~ 107 (398)
T PLN02772 104 FLEV 107 (398)
T ss_pred EEEc
Confidence 7765
No 62
>PLN02772 guanylate kinase
Probab=97.32 E-value=0.0018 Score=58.33 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=59.0
Q ss_pred CCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc-ccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684 128 SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT-YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC 206 (373)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~ 206 (373)
++...++..++ .|+|++||.+ +.. ....+++||..+++|......- .++.++.++++++
T Consensus 24 ~~~~~tav~ig-----------dk~yv~GG~~-----d~~~~~~~v~i~D~~t~~W~~P~V~G----~~P~~r~GhSa~v 83 (398)
T PLN02772 24 PKNRETSVTIG-----------DKTYVIGGNH-----EGNTLSIGVQILDKITNNWVSPIVLG----TGPKPCKGYSAVV 83 (398)
T ss_pred CCCcceeEEEC-----------CEEEEEcccC-----CCccccceEEEEECCCCcEecccccC----CCCCCCCcceEEE
Confidence 55667777787 9999999987 433 5679999999999998765442 1155677777777
Q ss_pred E-CCEEEEEEcC--CceEEEEEECCC
Q 046684 207 T-RGMLYWITSA--RAYSVIGFDIES 229 (373)
Q Consensus 207 ~-~g~ly~~gg~--~~~~i~~yd~~~ 229 (373)
+ ++.|+++... ...+++-+.+.|
T Consensus 84 ~~~~rilv~~~~~~~~~~~w~l~~~t 109 (398)
T PLN02772 84 LNKDRILVIKKGSAPDDSIWFLEVDT 109 (398)
T ss_pred ECCceEEEEeCCCCCccceEEEEcCC
Confidence 7 5899999732 245566665554
No 63
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.29 E-value=0.11 Score=45.64 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=103.3
Q ss_pred eeEEEEeCCCCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCCCCCeEEEEEcC
Q 046684 63 LCCYVHNPVSDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSRTNPAVGIVMEG 140 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~ 140 (373)
..+..+|+.+++.... .....++ ......-+..+|+.++. ...+.+||..+++... ++.... ...++ . .+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~---~~~~~-~-~~ 82 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASD--SDTIQVIDLATGEVIGTLPSGPD---PELFA-L-HP 82 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECC--CCeEEEEECCCCcEEEeccCCCC---ccEEE-E-CC
Confidence 4666788876643222 2111122 12222224456666543 4678999999887644 332111 11222 1 11
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCc
Q 046684 141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARA 219 (373)
Q Consensus 141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~ 219 (373)
.+ .++|+.++.+ ..+.+||..+.+ .+..++.. .....+++ -+|.+++++....
T Consensus 83 ~g-------~~l~~~~~~~----------~~l~~~d~~~~~--~~~~~~~~-------~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 83 NG-------KILYIANEDD----------NLVTVIDIETRK--VLAEIPVG-------VEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred CC-------CEEEEEcCCC----------CeEEEEECCCCe--EEeEeeCC-------CCcceEEECCCCCEEEEEecCC
Confidence 10 4566654322 368889987753 22222100 00112222 3566666654433
Q ss_pred eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCC
Q 046684 220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKA 299 (373)
Q Consensus 220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~ 299 (373)
..+..||..+.+-... .+.. .........-+|+.+++++..+..+.+|+++. . +.+..+............
T Consensus 137 ~~~~~~d~~~~~~~~~-~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~----~--~~~~~~~~~~~~~~~~~~- 207 (300)
T TIGR03866 137 NMAHFIDTKTYEIVDN-VLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVAT----R--KVIKKITFEIPGVHPEAV- 207 (300)
T ss_pred CeEEEEeCCCCeEEEE-EEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCc----c--eeeeeeeecccccccccC-
Confidence 4566788876544322 1111 11111222335665555544444578888854 2 233332211000000000
Q ss_pred CCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 300 SWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
..........+..+|+..+..+.+.+||.+ +.
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~--~~ 239 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAK--TY 239 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECC--CC
Confidence 000122223355667765555679999998 55
No 64
>PF13854 Kelch_5: Kelch motif
Probab=97.19 E-value=0.00097 Score=39.55 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=32.0
Q ss_pred CCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCC
Q 046684 125 LNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRH 179 (373)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~ 179 (373)
+|.+|..+++++++ ++||++||... .......++++||..+
T Consensus 1 ~P~~R~~hs~~~~~-----------~~iyi~GG~~~---~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG-----------NNIYIFGGYSG---NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEEC-----------CEEEEEcCccC---CCCCEECcEEEEECCC
Confidence 36778888888887 99999999871 1355678899999865
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.17 E-value=0.17 Score=46.45 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=107.8
Q ss_pred eEEeeCcEEEEeeCCCCceEEEEEcCcccc--eec-cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCC
Q 046684 89 PVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRY-LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGG 165 (373)
Q Consensus 89 ~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~-lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~ 165 (373)
.....++.+|+.+. ...++.+|+.|++ |+. ++.. ...+.++.+ .++|+.. .+
T Consensus 60 ~p~v~~~~v~v~~~---~g~v~a~d~~tG~~~W~~~~~~~----~~~~p~v~~-----------~~v~v~~-~~------ 114 (377)
T TIGR03300 60 QPAVAGGKVYAADA---DGTVVALDAETGKRLWRVDLDER----LSGGVGADG-----------GLVFVGT-EK------ 114 (377)
T ss_pred ceEEECCEEEEECC---CCeEEEEEccCCcEeeeecCCCC----cccceEEcC-----------CEEEEEc-CC------
Confidence 34566899998776 4679999999886 643 3321 111222222 6777643 22
Q ss_pred CcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCC
Q 046684 166 ATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMAD 241 (373)
Q Consensus 166 ~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~ 241 (373)
..++.+|..+++ |+....-+ .....+..++.+|+.. ....+.++|++++ .|+.- ...+.
T Consensus 115 ----g~l~ald~~tG~~~W~~~~~~~----------~~~~p~v~~~~v~v~~--~~g~l~a~d~~tG~~~W~~~-~~~~~ 177 (377)
T TIGR03300 115 ----GEVIALDAEDGKELWRAKLSSE----------VLSPPLVANGLVVVRT--NDGRLTALDAATGERLWTYS-RVTPA 177 (377)
T ss_pred ----CEEEEEECCCCcEeeeeccCce----------eecCCEEECCEEEEEC--CCCeEEEEEcCCCceeeEEc-cCCCc
Confidence 368999987765 87543221 1123355678888763 3577999999876 47654 22221
Q ss_pred -C-CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh--hhhcCCCCCCCceEEEecCCEEEEEE
Q 046684 242 -R-LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG--MRLSGGKASWGGTRCAAGNGAICLYR 317 (373)
Q Consensus 242 -~-~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 317 (373)
. ......+..++.+|+ +. .+..+..+++.. .+..|+.-...+.... ..... .....+..++.+|+..
T Consensus 178 ~~~~~~~sp~~~~~~v~~-~~-~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~-----~~~~p~~~~~~vy~~~ 248 (377)
T TIGR03300 178 LTLRGSASPVIADGGVLV-GF-AGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVD-----VDGDPVVDGGQVYAVS 248 (377)
T ss_pred eeecCCCCCEEECCEEEE-EC-CCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhc-----cCCccEEECCEEEEEE
Confidence 1 112233455665543 32 223344555544 3456764322221100 00000 0112234578888865
Q ss_pred cCCccEEEEEccccCCcccEEEe
Q 046684 318 EVGLGMIIWREDEDKRKWEWVWV 340 (373)
Q Consensus 318 ~~~~~~~~yd~~~~~~~~~W~~~ 340 (373)
. .+.+.+||++ +++..|+.-
T Consensus 249 ~-~g~l~a~d~~--tG~~~W~~~ 268 (377)
T TIGR03300 249 Y-QGRVAALDLR--SGRVLWKRD 268 (377)
T ss_pred c-CCEEEEEECC--CCcEEEeec
Confidence 3 4579999999 887778753
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.16 E-value=0.13 Score=44.08 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=107.0
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
+|.+|+..-. ...++.+|+.+++-..+.... ..++++.... +++|+..... ..
T Consensus 11 ~g~l~~~D~~--~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~---------g~l~v~~~~~------------~~ 63 (246)
T PF08450_consen 11 DGRLYWVDIP--GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD---------GRLYVADSGG------------IA 63 (246)
T ss_dssp TTEEEEEETT--TTEEEEEETTTTEEEEEESSS----EEEEEEECTT---------SEEEEEETTC------------EE
T ss_pred CCEEEEEEcC--CCEEEEEECCCCeEEEEecCC----CceEEEEccC---------CEEEEEEcCc------------eE
Confidence 6777877643 568999999998765432222 1223222111 7788876432 46
Q ss_pred EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcC-----Cc--eEEEEEECCCCcEEecccCCCCCCCce
Q 046684 174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA-----RA--YSVIGFDIESNTWRELSAPMADRLEFA 246 (373)
Q Consensus 174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~-----~~--~~i~~yd~~~~~w~~~~~~~p~~~~~~ 246 (373)
++|+.+++++.+...+.. .....+.+..++--+|.+|+-... .. ..++.+++. ++...+...+. ...
T Consensus 64 ~~d~~~g~~~~~~~~~~~--~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pN 137 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDG--GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPN 137 (246)
T ss_dssp EEETTTTEEEEEEEEETT--CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEE
T ss_pred EEecCCCcEEEEeeccCC--CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---ccc
Confidence 669999999877665311 000111111223336888887521 11 679999999 66655522211 122
Q ss_pred eEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEe---echhh-hhhhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684 247 TLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEK---VPIEM-GMRLSGGKASWGGTRCAAGNGAICLYREVG 320 (373)
Q Consensus 247 ~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~---~p~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 320 (373)
+++.. ++ .||+... ....+..++++. .+..+..... ++... .. .-.++..++.||+.....
T Consensus 138 Gi~~s~dg~~lyv~ds-~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~g~p----------DG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADS-FNGRIWRFDLDA--DGGELSNRRVFIDFPGGPGYP----------DGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEEETTSSEEEEEET-TTTEEEEEEEET--TTCCEEEEEEEEE-SSSSCEE----------EEEEEBTTS-EEEEEETT
T ss_pred ceEECCcchheeeccc-ccceeEEEeccc--cccceeeeeeEEEcCCCCcCC----------CcceEcCCCCEEEEEcCC
Confidence 44443 45 4666543 333355566654 3444554333 22221 00 133444578999987777
Q ss_pred ccEEEEEccccCCcccEEEec
Q 046684 321 LGMIIWREDEDKRKWEWVWVG 341 (373)
Q Consensus 321 ~~~~~yd~~~~~~~~~W~~~~ 341 (373)
+.|++||++ .+ .-..++
T Consensus 205 ~~I~~~~p~--G~--~~~~i~ 221 (246)
T PF08450_consen 205 GRIVVFDPD--GK--LLREIE 221 (246)
T ss_dssp TEEEEEETT--SC--EEEEEE
T ss_pred CEEEEECCC--cc--EEEEEc
Confidence 799999998 55 444443
No 67
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.12 E-value=0.16 Score=44.47 Aligned_cols=221 Identities=10% Similarity=0.038 Sum_probs=100.5
Q ss_pred eeEEEEeCCCCCccc-cCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684 63 LCCYVHNPVSDKWHV-LSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP 141 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~ 141 (373)
..+..||..+.+... ++....+ ........++.+|+.++. ...+.+||..+++-.. ..+.......+++..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~--~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~~~--- 124 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPDP-ELFALHPNGKILYIANED--DNLVTVIDIETRKVLA--EIPVGVEPEGMAVSP--- 124 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCCc-cEEEECCCCCEEEEEcCC--CCeEEEEECCCCeEEe--EeeCCCCcceEEECC---
Confidence 456678887765432 2221111 112122234556665542 3579999998865322 111111111222211
Q ss_pred CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceE
Q 046684 142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYS 221 (373)
Q Consensus 142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~ 221 (373)
++++++++... ...+..||..+++-....... . ........-+|...++++.....
T Consensus 125 -------dg~~l~~~~~~---------~~~~~~~d~~~~~~~~~~~~~------~--~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 125 -------DGKIVVNTSET---------TNMAHFIDTKTYEIVDNVLVD------Q--RPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred -------CCCEEEEEecC---------CCeEEEEeCCCCeEEEEEEcC------C--CccEEEECCCCCEEEEEcCCCCE
Confidence 15555555332 123556777654321111110 0 00111122355544444445678
Q ss_pred EEEEECCCCcEE-ecccCCC----CCCCceeEE-EECCEE-EEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhh
Q 046684 222 VIGFDIESNTWR-ELSAPMA----DRLEFATLV-SRNQKL-TLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRL 294 (373)
Q Consensus 222 i~~yd~~~~~w~-~~~~~~p----~~~~~~~~~-~~~g~l-~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~ 294 (373)
+..||+++.+.. .+....+ .......+. .-+|+. |+..+ ....+.+|+++ .++.+..+......
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~------~~~~~~~~~~~~~~-- 251 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAK------TYEVLDYLLVGQRV-- 251 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECC------CCcEEEEEEeCCCc--
Confidence 999999876542 2211111 111111222 234544 44333 33347788764 35554443221110
Q ss_pred cCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 295 SGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
........+..||+..+..+.+.+||.+ +.
T Consensus 252 -------~~~~~~~~g~~l~~~~~~~~~i~v~d~~--~~ 281 (300)
T TIGR03866 252 -------WQLAFTPDEKYLLTTNGVSNDVSVIDVA--AL 281 (300)
T ss_pred -------ceEEECCCCCEEEEEcCCCCeEEEEECC--CC
Confidence 0233333455666655667789999999 66
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.98 E-value=0.042 Score=46.74 Aligned_cols=184 Identities=14% Similarity=0.138 Sum_probs=104.6
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES 229 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~ 229 (373)
+.+|.--|.. + .+.+..||+.+++=.....+|.. ..+-..+.+++++|.+. ...+....||.++
T Consensus 56 g~LyESTG~y-----G---~S~l~~~d~~tg~~~~~~~l~~~-------~FgEGit~~~d~l~qLT-Wk~~~~f~yd~~t 119 (264)
T PF05096_consen 56 GTLYESTGLY-----G---QSSLRKVDLETGKVLQSVPLPPR-------YFGEGITILGDKLYQLT-WKEGTGFVYDPNT 119 (264)
T ss_dssp TEEEEEECST-----T---EEEEEEEETTTSSEEEEEE-TTT---------EEEEEEETTEEEEEE-SSSSEEEEEETTT
T ss_pred CEEEEeCCCC-----C---cEEEEEEECCCCcEEEEEECCcc-------ccceeEEEECCEEEEEE-ecCCeEEEEcccc
Confidence 6777765554 2 46789999999987666666532 23345678899999994 6678899999975
Q ss_pred CcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec
Q 046684 230 NTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG 309 (373)
Q Consensus 230 ~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 309 (373)
++.+ ...+....+-+++.-+..|++..|.. .++.++. ...+.+..+....-...... --..-..
T Consensus 120 --l~~~-~~~~y~~EGWGLt~dg~~Li~SDGS~----~L~~~dP----~~f~~~~~i~V~~~g~pv~~-----LNELE~i 183 (264)
T PF05096_consen 120 --LKKI-GTFPYPGEGWGLTSDGKRLIMSDGSS----RLYFLDP----ETFKEVRTIQVTDNGRPVSN-----LNELEYI 183 (264)
T ss_dssp --TEEE-EEEE-SSS--EEEECSSCEEEE-SSS----EEEEE-T----TT-SEEEEEE-EETTEE--------EEEEEEE
T ss_pred --ceEE-EEEecCCcceEEEcCCCEEEEECCcc----ceEEECC----cccceEEEEEEEECCEECCC-----cEeEEEE
Confidence 4444 33444457778887777888877644 4555554 45555555433211000000 0112234
Q ss_pred CCEEEEEEcCCccEEEEEccccCCccc-EEEeccc----ccCCCCcccccceeEEEecccccc
Q 046684 310 NGAICLYREVGLGMIIWREDEDKRKWE-WVWVGGC----CLTGGKQVQNVPMRGVLLHPSLAC 367 (373)
Q Consensus 310 ~~~i~~~~~~~~~~~~yd~~~~~~~~~-W~~~~~~----~~~~~~~~~~~~~~~~~~~p~l~~ 367 (373)
+|.||.---.++.|+.-||+ +++++ |..+..+ .....+......+.|+.|.|.-..
T Consensus 184 ~G~IyANVW~td~I~~Idp~--tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPE--TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp TTEEEEEETTSSEEEEEETT--T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred cCEEEEEeCCCCeEEEEeCC--CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 88898877777889999999 98433 3333222 111111112346889999876443
No 69
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.88 E-value=0.058 Score=48.65 Aligned_cols=130 Identities=11% Similarity=0.025 Sum_probs=75.5
Q ss_pred ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC---------ceEEEEee-----
Q 046684 207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG---------DACVWELS----- 272 (373)
Q Consensus 207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~---------~~~i~~~~----- 272 (373)
.+.+|..+.. ...+..||+++..-... ..+.........+.++|+||++...... .+++....
T Consensus 75 ~gskIv~~d~--~~~t~vyDt~t~av~~~-P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~ 151 (342)
T PF07893_consen 75 HGSKIVAVDQ--SGRTLVYDTDTRAVATG-PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD 151 (342)
T ss_pred cCCeEEEEcC--CCCeEEEECCCCeEecc-CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence 4778888842 36699999999988866 3444444445566779999999865322 23333222
Q ss_pred -cCCCCCCeEEEEeechhhhhhhcCCCCC-CCceEEEecCCEEEEE-EcCCccEEEEEccccCCcccEEEecccccCC
Q 046684 273 -EGGDDDIWCLIEKVPIEMGMRLSGGKAS-WGGTRCAAGNGAICLY-REVGLGMIIWREDEDKRKWEWVWVGGCCLTG 347 (373)
Q Consensus 273 -~~~~~~~W~~v~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~-~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~ 347 (373)
.....-.|..+...| +......... ...++++ .|..||+- .+.....+.||.+ +. +|+++....++-
T Consensus 152 ~~~~~~w~W~~LP~PP---f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~--~~--~W~~~GdW~LPF 221 (342)
T PF07893_consen 152 PSPEESWSWRSLPPPP---FVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTE--SH--EWRKHGDWMLPF 221 (342)
T ss_pred ccCCCcceEEcCCCCC---ccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcC--Cc--ceeeccceecCc
Confidence 101223455543333 3321111000 1123333 57889884 3332358999999 99 999997765553
No 70
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.84 E-value=0.43 Score=44.79 Aligned_cols=233 Identities=10% Similarity=-0.005 Sum_probs=109.6
Q ss_pred CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684 62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP 141 (373)
Q Consensus 62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~ 141 (373)
...++..|.....-..++....+-.....+.-+..|...........++++|+.+++.+.+...+..... ...-.++
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~--~~~SPDG- 257 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFA--PRFSPDG- 257 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccC--cEECCCC-
Confidence 3577777765443333322211111111222233344433223357899999999988777654432211 1111111
Q ss_pred CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE-EEEEEc-CCc
Q 046684 142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITS-ARA 219 (373)
Q Consensus 142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg-~~~ 219 (373)
.+|++....+ ...+++++|..++.-+.+...+. ........-+|+ +++... ...
T Consensus 258 --------~~la~~~~~~--------g~~~Iy~~d~~~~~~~~Lt~~~~--------~~~~~~~spDG~~i~f~s~~~g~ 313 (435)
T PRK05137 258 --------RKVVMSLSQG--------GNTDIYTMDLRSGTTTRLTDSPA--------IDTSPSYSPDGSQIVFESDRSGS 313 (435)
T ss_pred --------CEEEEEEecC--------CCceEEEEECCCCceEEccCCCC--------ccCceeEcCCCCEEEEEECCCCC
Confidence 4454443221 13578899998887766654321 011111223444 444421 123
Q ss_pred eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCC
Q 046684 220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKA 299 (373)
Q Consensus 220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~ 299 (373)
..|+.+|..+++.+.+ .......... ...-+|+..++.........+|.++. ++.....+..-. .
T Consensus 314 ~~Iy~~d~~g~~~~~l-t~~~~~~~~~-~~SpdG~~ia~~~~~~~~~~i~~~d~--~~~~~~~lt~~~--~--------- 378 (435)
T PRK05137 314 PQLYVMNADGSNPRRI-SFGGGRYSTP-VWSPRGDLIAFTKQGGGQFSIGVMKP--DGSGERILTSGF--L--------- 378 (435)
T ss_pred CeEEEEECCCCCeEEe-ecCCCcccCe-EECCCCCEEEEEEcCCCceEEEEEEC--CCCceEeccCCC--C---------
Confidence 5788999988877776 2221111111 12234544333333222234444443 224333332111 0
Q ss_pred CCCceEEEecCCEEEEEEcCC-----ccEEEEEccccCCcccEEEec
Q 046684 300 SWGGTRCAAGNGAICLYREVG-----LGMIIWREDEDKRKWEWVWVG 341 (373)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~~-----~~~~~yd~~~~~~~~~W~~~~ 341 (373)
.........|..|++..... ..++.+|++ .+ .-+.++
T Consensus 379 -~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~--g~--~~~~l~ 420 (435)
T PRK05137 379 -VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT--GR--NEREVP 420 (435)
T ss_pred -CCCCeECCCCCEEEEEEccCCCCCcceEEEEECC--CC--ceEEcc
Confidence 01244455566776654321 368999998 76 545443
No 71
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.77 E-value=0.23 Score=42.16 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=126.4
Q ss_pred EEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCC-CCCCCCeEEEEEcCCCC
Q 046684 65 CYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN-VSRTNPAVGIVMEGPAQ 143 (373)
Q Consensus 65 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~-~~~~~~~~~~~~~~~~~ 143 (373)
+-..||.+.+-.+.++..-.+....+.--+|-..+..+ ..-+..+||.|.+.++.|-.. ....+....+.+..
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~---~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~--- 158 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT---GLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPW--- 158 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC---cceeEEecCcccceEEeecccccCCCcccceeeCCC---
Confidence 33357777777666665544444444444555666554 247889999998887765332 22223333333321
Q ss_pred CCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEE
Q 046684 144 HGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVI 223 (373)
Q Consensus 144 ~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~ 223 (373)
+.++..|... .. -..|+.++.-+..+ .|++ ..-+ --++.-+|.+|+. ....+.|.
T Consensus 159 ------G~lWFt~q~G-----~y------GrLdPa~~~i~vfp-aPqG-----~gpy-Gi~atpdGsvwya-slagnaia 213 (353)
T COG4257 159 ------GNLWFTGQIG-----AY------GRLDPARNVISVFP-APQG-----GGPY-GICATPDGSVWYA-SLAGNAIA 213 (353)
T ss_pred ------ccEEEeeccc-----cc------eecCcccCceeeec-cCCC-----CCCc-ceEECCCCcEEEE-eccccceE
Confidence 7788776432 10 13334333322211 1211 0011 1234568999988 45567888
Q ss_pred EEECCCCcEEecccCCCCCCCcee-EEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCC
Q 046684 224 GFDIESNTWRELSAPMADRLEFAT-LVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWG 302 (373)
Q Consensus 224 ~yd~~~~~w~~~~~~~p~~~~~~~-~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~ 302 (373)
..|+.+..=++++.|-+....... .+.-.|++.+..- ....+..+++.. ..|.. ..+|...-+
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~----~sW~e-ypLPgs~ar---------- 277 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSV----TSWIE-YPLPGSKAR---------- 277 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEecc-CCceeeEeCccc----cccee-eeCCCCCCC----------
Confidence 999988866666333332222222 2334577776632 222245555544 77876 345543221
Q ss_pred ceE-EEecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684 303 GTR-CAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 303 ~~~-~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
+.. .+...|.+++-.-..+.+..||++ +. +.++++.
T Consensus 278 pys~rVD~~grVW~sea~agai~rfdpe--ta--~ftv~p~ 314 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFDPE--TA--RFTVLPI 314 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecCcc--cc--eEEEecC
Confidence 233 344578999988777889999999 88 8887764
No 72
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.66 E-value=0.6 Score=44.01 Aligned_cols=223 Identities=8% Similarity=0.016 Sum_probs=108.3
Q ss_pred eeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCC
Q 046684 63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPA 142 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~ 142 (373)
..++..|.....-..+.....+......+.-+..|+..........++++|..+++-+.+...+.... .... .+.+
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~--~~~w--SPDG 273 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING--APRF--SPDG 273 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC--CeeE--CCCC
Confidence 56666676554433332211111111222223344443322335689999999988766654432211 1111 1111
Q ss_pred CCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCE-EEEEEc-CCc
Q 046684 143 QHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGM-LYWITS-ARA 219 (373)
Q Consensus 143 ~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~-ly~~gg-~~~ 219 (373)
.+|++....+ ....++++|..+++.+.+..... .....+ .-+|+ +++... ...
T Consensus 274 -------~~La~~~~~~--------g~~~Iy~~dl~tg~~~~lt~~~~---------~~~~p~wSpDG~~I~f~s~~~g~ 329 (448)
T PRK04792 274 -------KKLALVLSKD--------GQPEIYVVDIATKALTRITRHRA---------IDTEPSWHPDGKSLIFTSERGGK 329 (448)
T ss_pred -------CEEEEEEeCC--------CCeEEEEEECCCCCeEECccCCC---------CccceEECCCCCEEEEEECCCCC
Confidence 4565544222 13578999999988877654310 011112 22443 544432 124
Q ss_pred eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCC
Q 046684 220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKA 299 (373)
Q Consensus 220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~ 299 (373)
..++.+|+++++++.+ .. ...........-+|+.+++.........+|.++. ++...+.+..-....
T Consensus 330 ~~Iy~~dl~~g~~~~L-t~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl--~~g~~~~lt~~~~d~--------- 396 (448)
T PRK04792 330 PQIYRVNLASGKVSRL-TF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDL--ETGAMQVLTSTRLDE--------- 396 (448)
T ss_pred ceEEEEECCCCCEEEE-ec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEEC--CCCCeEEccCCCCCC---------
Confidence 5799999999988877 21 1111111122335544444434333356777765 456555543221110
Q ss_pred CCCceEEEecCCEEEEEEcCC--ccEEEEEcc
Q 046684 300 SWGGTRCAAGNGAICLYREVG--LGMIIWRED 329 (373)
Q Consensus 300 ~~~~~~~~~~~~~i~~~~~~~--~~~~~yd~~ 329 (373)
.......|..|++..... ..++++|.+
T Consensus 397 ---~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 397 ---SPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred ---CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 234445566666654332 347777775
No 73
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.58 E-value=0.4 Score=41.00 Aligned_cols=174 Identities=14% Similarity=0.136 Sum_probs=102.5
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECC-----CCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEE
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSR-----HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIG 224 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~-----~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~ 224 (373)
.++|++.+.. +. .+..|... .+.....-.+| ....+...++.||.+|.-. .....|..
T Consensus 31 ~~iy~~~~~~-----~~----~v~ey~~~~~f~~~~~~~~~~~Lp-------~~~~GtG~vVYngslYY~~-~~s~~Ivk 93 (250)
T PF02191_consen 31 EKIYVTSGFS-----GN----TVYEYRNYEDFLRNGRSSRTYKLP-------YPWQGTGHVVYNGSLYYNK-YNSRNIVK 93 (250)
T ss_pred CCEEEECccC-----CC----EEEEEcCHhHHhhcCCCceEEEEe-------ceeccCCeEEECCcEEEEe-cCCceEEE
Confidence 8899998765 22 55555432 23333333332 2344556688999999984 45789999
Q ss_pred EECCCCcEEecccCCCCCC------------CceeEEEECCEEEEEEeecCCc--eEEEEeec--CCCCCCeEEEEeech
Q 046684 225 FDIESNTWRELSAPMADRL------------EFATLVSRNQKLTLIGGTCGGD--ACVWELSE--GGDDDIWCLIEKVPI 288 (373)
Q Consensus 225 yd~~~~~w~~~~~~~p~~~------------~~~~~~~~~g~l~~~gg~~~~~--~~i~~~~~--~~~~~~W~~v~~~p~ 288 (373)
||+.++.-... ..+|.+. ....+++-...|.++-...+.. +.+=+++. .....+|.. ..+.
T Consensus 94 ydL~t~~v~~~-~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k 170 (250)
T PF02191_consen 94 YDLTTRSVVAR-RELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPK 170 (250)
T ss_pred EECcCCcEEEE-EECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCc
Confidence 99999876622 2333322 1234566567788887655432 66666665 112233442 2333
Q ss_pred hhhhhhcCCCCCCCceEEEecCCEEEEEEcCC----ccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684 289 EMGMRLSGGKASWGGTRCAAGNGAICLYREVG----LGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS 364 (373)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~ 364 (373)
.. ...+++.=|.||++.... .-..+||+. ++ +=. ...+++...-. ....+.|.|+
T Consensus 171 ~~------------~~naFmvCGvLY~~~s~~~~~~~I~yafDt~--t~--~~~-~~~i~f~~~~~----~~~~l~YNP~ 229 (250)
T PF02191_consen 171 RS------------AGNAFMVCGVLYATDSYDTRDTEIFYAFDTY--TG--KEE-DVSIPFPNPYG----NISMLSYNPR 229 (250)
T ss_pred hh------------hcceeeEeeEEEEEEECCCCCcEEEEEEECC--CC--cee-ceeeeeccccC----ceEeeeECCC
Confidence 22 245666678899987543 346789999 87 533 34455555433 4556788886
No 74
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.57 E-value=0.23 Score=42.13 Aligned_cols=139 Identities=12% Similarity=0.161 Sum_probs=81.2
Q ss_pred eEEEEECCCCc--eeeecCCCccccccceeccCCc--eEEECCEEEEEEcCCceEEEEEECCCCc--EEecccCCCCCCC
Q 046684 171 MVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNE--SVCTRGMLYWITSARAYSVIGFDIESNT--WRELSAPMADRLE 244 (373)
Q Consensus 171 ~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~--~~~~~g~ly~~gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~ 244 (373)
.+..+|..+++ |+.-..-+ ..... .+..++.+|+.. ....+.++|..+++ |+.- . +....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~---------~~~~~~~~~~~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~-~--~~~~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPG---------IGGPVATAVPDGGRVYVAS--GDGNLYALDAKTGKVLWRFD-L--PGPIS 69 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSS---------CSSEEETEEEETTEEEEEE--TTSEEEEEETTTSEEEEEEE-C--SSCGG
T ss_pred EEEEEECCCCCEEEEEECCCC---------CCCccceEEEeCCEEEEEc--CCCEEEEEECCCCCEEEEee-c--ccccc
Confidence 56778887765 87633110 11111 244788899883 56889999998774 6654 2 22222
Q ss_pred ceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEE-EEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccE
Q 046684 245 FATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCL-IEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGM 323 (373)
Q Consensus 245 ~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~-v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 323 (373)
. .....++.+|+.... ..+..++..+ .+..|+. ....+..... ........++.+++... .+.+
T Consensus 70 ~-~~~~~~~~v~v~~~~--~~l~~~d~~t--G~~~W~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~g~l 134 (238)
T PF13360_consen 70 G-APVVDGGRVYVGTSD--GSLYALDAKT--GKVLWSIYLTSSPPAGVR---------SSSSPAVDGDRLYVGTS-SGKL 134 (238)
T ss_dssp S-GEEEETTEEEEEETT--SEEEEEETTT--SCEEEEEEE-SSCTCSTB-----------SEEEEETTEEEEEET-CSEE
T ss_pred c-eeeecccccccccce--eeeEecccCC--cceeeeeccccccccccc---------cccCceEecCEEEEEec-cCcE
Confidence 2 247778898887622 2344555444 5556884 4332222111 12444445777777553 5589
Q ss_pred EEEEccccCCcccEEEe
Q 046684 324 IIWREDEDKRKWEWVWV 340 (373)
Q Consensus 324 ~~yd~~~~~~~~~W~~~ 340 (373)
+++|++ +++..|+.-
T Consensus 135 ~~~d~~--tG~~~w~~~ 149 (238)
T PF13360_consen 135 VALDPK--TGKLLWKYP 149 (238)
T ss_dssp EEEETT--TTEEEEEEE
T ss_pred EEEecC--CCcEEEEee
Confidence 999999 997788864
No 75
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.53 E-value=0.6 Score=42.33 Aligned_cols=266 Identities=14% Similarity=0.110 Sum_probs=132.3
Q ss_pred eeEEEEeCCCCCccccCC-CCCCCCc-eeEEeeCcEEEEeeCCC-CceEE--EEEcCcccceeccCCCCCCCCCCeEEEE
Q 046684 63 LCCYVHNPVSDKWHVLSL-DFLPYPV-RPVSSIGSFLLLRPINS-TILQL--VLCNPFTRQFRYLPLLNVSRTNPAVGIV 137 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~~~-~~~~~~~-~~~~~~~g~l~~~gg~~-~~~~~--~v~np~t~~w~~lp~~~~~~~~~~~~~~ 137 (373)
-..+.||..+.++..+.. ....... ..+...+..||+..... ....+ +..++.+++.+.+...+.....++...+
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~ 94 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV 94 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE
T ss_pred EEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE
Confidence 455557778888876632 1222222 23445788899987642 33444 4455555677776655432222232223
Q ss_pred EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCC-ceeeecCC-------CccccccceeccCCceEEE-C
Q 046684 138 MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHD-AWQIIGSM-------PVEFAVRLTVWTPNESVCT-R 208 (373)
Q Consensus 138 ~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~-------p~~~~~~~~~~~~~~~~~~-~ 208 (373)
. +.+ ..+|+.. +. ...+.+|+...+ +=...... |.. ........|.+.+- +
T Consensus 95 ~-~~g-------~~l~van-y~---------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~--~rq~~~h~H~v~~~pd 154 (345)
T PF10282_consen 95 D-PDG-------RFLYVAN-YG---------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP--DRQEGPHPHQVVFSPD 154 (345)
T ss_dssp C-TTS-------SEEEEEE-TT---------TTEEEEEEECTTSEEEEEEEEEESEEEESST--TTTSSTCEEEEEE-TT
T ss_pred e-cCC-------CEEEEEE-cc---------CCeEEEEEccCCcccceeeeecccCCCCCcc--cccccccceeEEECCC
Confidence 2 111 4566653 22 235677776653 22111100 100 00111122333333 3
Q ss_pred C-EEEEEEcCCceEEEEEECCCCc--EEecc-cCCCCCCCceeEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEE
Q 046684 209 G-MLYWITSARAYSVIGFDIESNT--WRELS-APMADRLEFATLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCL 282 (373)
Q Consensus 209 g-~ly~~gg~~~~~i~~yd~~~~~--w~~~~-~~~p~~~~~~~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~ 282 (373)
| .+|+. ......|..|+...+. ..... ...|....-.+++.. +| .+|++. .....+.+++++. .+..++.
T Consensus 155 g~~v~v~-dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~s~~v~v~~~~~--~~g~~~~ 230 (345)
T PF10282_consen 155 GRFVYVP-DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-ELSNTVSVFDYDP--SDGSLTE 230 (345)
T ss_dssp SSEEEEE-ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEET--TTTEEEE
T ss_pred CCEEEEE-ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-CCCCcEEEEeecc--cCCceeE
Confidence 4 46655 3446778888887665 54421 122332222234433 44 566665 3445588999884 4567777
Q ss_pred EEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEE
Q 046684 283 IEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVL 360 (373)
Q Consensus 283 v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 360 (373)
+..++..... ..+. ..+..+.. .+..||+.+...+.|.+|+++.+++ +-+.+...+..+.. ...|.
T Consensus 231 ~~~~~~~~~~-~~~~---~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g--~l~~~~~~~~~G~~------Pr~~~ 298 (345)
T PF10282_consen 231 IQTISTLPEG-FTGE---NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG--TLTLVQTVPTGGKF------PRHFA 298 (345)
T ss_dssp EEEEESCETT-SCSS---SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT--TEEEEEEEEESSSS------EEEEE
T ss_pred EEEeeecccc-cccc---CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC--ceEEEEEEeCCCCC------ccEEE
Confidence 7664422110 0000 01333333 3678999888888899999853367 66666665543332 34566
Q ss_pred eccc
Q 046684 361 LHPS 364 (373)
Q Consensus 361 ~~p~ 364 (373)
+.|.
T Consensus 299 ~s~~ 302 (345)
T PF10282_consen 299 FSPD 302 (345)
T ss_dssp E-TT
T ss_pred EeCC
Confidence 6554
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.33 Score=44.24 Aligned_cols=243 Identities=12% Similarity=0.042 Sum_probs=115.5
Q ss_pred CCCceEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEE-eeCcEEEEeeCCCCceEEEEEcCcccce-eccCCC
Q 046684 48 RRPAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVS-SIGSFLLLRPINSTILQLVLCNPFTRQF-RYLPLL 125 (373)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~g~l~~~gg~~~~~~~~v~np~t~~w-~~lp~~ 125 (373)
+.+|.=+.+..+ ..+..|+..+..-.+. .....+...++. -.+|.++..|+. ...+-+||..++.- +.+-..
T Consensus 36 p~~P~d~aVt~S---~rvqly~~~~~~~~k~-~srFk~~v~s~~fR~DG~LlaaGD~--sG~V~vfD~k~r~iLR~~~ah 109 (487)
T KOG0310|consen 36 PKHPYDFAVTSS---VRVQLYSSVTRSVRKT-FSRFKDVVYSVDFRSDGRLLAAGDE--SGHVKVFDMKSRVILRQLYAH 109 (487)
T ss_pred CCCCCceEEecc---cEEEEEecchhhhhhh-HHhhccceeEEEeecCCeEEEccCC--cCcEEEeccccHHHHHHHhhc
Confidence 445544443332 4556687766543321 111122222333 336777777764 56788999555432 222222
Q ss_pred CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE
Q 046684 126 NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV 205 (373)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~ 205 (373)
..+.....+...+ +++++.|+.+ ..+..+|..+.. . ...+.. ...........
T Consensus 110 ~apv~~~~f~~~d-----------~t~l~s~sDd----------~v~k~~d~s~a~-v-~~~l~~----htDYVR~g~~~ 162 (487)
T KOG0310|consen 110 QAPVHVTKFSPQD-----------NTMLVSGSDD----------KVVKYWDLSTAY-V-QAELSG----HTDYVRCGDIS 162 (487)
T ss_pred cCceeEEEecccC-----------CeEEEecCCC----------ceEEEEEcCCcE-E-EEEecC----CcceeEeeccc
Confidence 2221111111122 7788777544 344555555544 1 111100 01111111223
Q ss_pred EECCEEEEEEcCCceEEEEEECCCC-cEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684 206 CTRGMLYWITSARAYSVIGFDIESN-TWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE 284 (373)
Q Consensus 206 ~~~g~ly~~gg~~~~~i~~yd~~~~-~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~ 284 (373)
-.++++.+-| .+.+.|--||..+. .|..- .....+.. .-+..-.|.+++..| ++.+.||++-. . .
T Consensus 163 ~~~~hivvtG-sYDg~vrl~DtR~~~~~v~e-lnhg~pVe-~vl~lpsgs~iasAg--Gn~vkVWDl~~----G-----~ 228 (487)
T KOG0310|consen 163 PANDHIVVTG-SYDGKVRLWDTRSLTSRVVE-LNHGCPVE-SVLALPSGSLIASAG--GNSVKVWDLTT----G-----G 228 (487)
T ss_pred cCCCeEEEec-CCCceEEEEEeccCCceeEE-ecCCCcee-eEEEcCCCCEEEEcC--CCeEEEEEecC----C-----c
Confidence 3567788774 56788999999887 44322 22222222 122233445555433 23489999964 1 1
Q ss_pred eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCC
Q 046684 285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGG 348 (373)
Q Consensus 285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~ 348 (373)
.+......+ . +.. ..-+...++.=++.++-++.+-+||.. .|+.+.+.-++++
T Consensus 229 qll~~~~~H-~---KtV-TcL~l~s~~~rLlS~sLD~~VKVfd~t------~~Kvv~s~~~~~p 281 (487)
T KOG0310|consen 229 QLLTSMFNH-N---KTV-TCLRLASDSTRLLSGSLDRHVKVFDTT------NYKVVHSWKYPGP 281 (487)
T ss_pred eehhhhhcc-c---ceE-EEEEeecCCceEeecccccceEEEEcc------ceEEEEeeecccc
Confidence 111111100 0 000 122222344555667777889999977 6777766655554
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.48 E-value=0.13 Score=43.91 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=71.9
Q ss_pred ECCEEEEEEcCC-ceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684 207 TRGMLYWITSAR-AYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK 285 (373)
Q Consensus 207 ~~g~ly~~gg~~-~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~ 285 (373)
.+|.+|--.|.. ...+..+|+++++-... .++|....+-+++.++++||.+.-..+ ..-+|+. +..+++.+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~~~FgEGit~~~d~l~qLTWk~~-~~f~yd~------~tl~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPPRYFGEGITILGDKLYQLTWKEG-TGFVYDP------NTLKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TTT--EEEEEEETTEEEEEESSSS-EEEEEET------TTTEEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCccccceeEEEECCEEEEEEecCC-eEEEEcc------ccceEEEE
Confidence 568888877644 57899999999988766 678887788899999999999975443 2345544 56788887
Q ss_pred echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
.+.+. + +.+.+..++.+++.+| +..+...||+
T Consensus 126 ~~y~~--E---------GWGLt~dg~~Li~SDG-S~~L~~~dP~ 157 (264)
T PF05096_consen 126 FPYPG--E---------GWGLTSDGKRLIMSDG-SSRLYFLDPE 157 (264)
T ss_dssp EE-SS--S-----------EEEECSSCEEEE-S-SSEEEEE-TT
T ss_pred EecCC--c---------ceEEEcCCCEEEEECC-ccceEEECCc
Confidence 76642 1 5788877888777665 5589999998
No 78
>PTZ00421 coronin; Provisional
Probab=96.47 E-value=0.84 Score=43.45 Aligned_cols=138 Identities=9% Similarity=0.069 Sum_probs=65.2
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeec---CCceEEEEeecCCCCCCeEEE
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTC---GGDACVWELSEGGDDDIWCLI 283 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~---~~~~~i~~~~~~~~~~~W~~v 283 (373)
+|.+.+.+ ...+.|..||+.+++-... ..... ......+...++..++..|.. +..+.+|++.. ........
T Consensus 179 dG~lLatg-s~Dg~IrIwD~rsg~~v~t-l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~--~~~p~~~~ 254 (493)
T PTZ00421 179 DGSLLCTT-SKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK--MASPYSTV 254 (493)
T ss_pred CCCEEEEe-cCCCEEEEEECCCCcEEEE-EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC--CCCceeEe
Confidence 56665553 4567899999987653221 11111 111111112233334433322 23489999865 11111111
Q ss_pred EeechhhhhhhcCCCCCCCceEEEecC-CEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEec
Q 046684 284 EKVPIEMGMRLSGGKASWGGTRCAAGN-GAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLH 362 (373)
Q Consensus 284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (373)
.+..... ........+ +.+++.+...+.|.+||+. ++ +....- .... .....|++|.
T Consensus 255 -~~d~~~~----------~~~~~~d~d~~~L~lggkgDg~Iriwdl~--~~--~~~~~~--~~~s-----~~~~~g~~~~ 312 (493)
T PTZ00421 255 -DLDQSSA----------LFIPFFDEDTNLLYIGSKGEGNIRCFELM--NE--RLTFCS--SYSS-----VEPHKGLCMM 312 (493)
T ss_pred -ccCCCCc----------eEEEEEcCCCCEEEEEEeCCCeEEEEEee--CC--ceEEEe--eccC-----CCCCcceEec
Confidence 1111000 011222233 4455544346789999999 87 543321 1111 2234578888
Q ss_pred ccccceeee
Q 046684 363 PSLACACIL 371 (373)
Q Consensus 363 p~l~~~~~~ 371 (373)
|...+.|.-
T Consensus 313 pk~~~dv~~ 321 (493)
T PTZ00421 313 PKWSLDTRK 321 (493)
T ss_pred ccccccccc
Confidence 887776643
No 79
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.45 E-value=0.63 Score=41.79 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=68.4
Q ss_pred EEEEEEcCCceEEEEEECC--CCcEEecc--cCCCC----CCCceeEEE-ECCE-EEEEEeecCCceEEEEeecCCCCCC
Q 046684 210 MLYWITSARAYSVIGFDIE--SNTWRELS--APMAD----RLEFATLVS-RNQK-LTLIGGTCGGDACVWELSEGGDDDI 279 (373)
Q Consensus 210 ~ly~~gg~~~~~i~~yd~~--~~~w~~~~--~~~p~----~~~~~~~~~-~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~ 279 (373)
.+|+. ....+.+..||.. +++.+.+. ...|. .+....+.. -+|+ ||+. ......+.+|+++. ++..
T Consensus 188 ~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-~~~~~~I~v~~i~~--~~~~ 263 (330)
T PRK11028 188 YAYCV-NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-DRTASLISVFSVSE--DGSV 263 (330)
T ss_pred EEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-cCCCCeEEEEEEeC--CCCe
Confidence 56666 3446788888876 34543321 11222 121112222 2454 5554 33344588999976 5567
Q ss_pred eEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccc
Q 046684 280 WCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCC 344 (373)
Q Consensus 280 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~ 344 (373)
++.+...+..... +.+.+...|..||+.+...+.+.+|+.+.+++ .++.+...+
T Consensus 264 ~~~~~~~~~~~~p---------~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g--~l~~~~~~~ 317 (330)
T PRK11028 264 LSFEGHQPTETQP---------RGFNIDHSGKYLIAAGQKSHHISVYEIDGETG--LLTELGRYA 317 (330)
T ss_pred EEEeEEEeccccC---------CceEECCCCCEEEEEEccCCcEEEEEEcCCCC--cEEEccccc
Confidence 7777776644211 13444455778888887677899997753377 677665544
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.43 E-value=0.069 Score=48.43 Aligned_cols=176 Identities=13% Similarity=0.124 Sum_probs=97.3
Q ss_pred cCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceee-ecCCCcc
Q 046684 113 NPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI-IGSMPVE 191 (373)
Q Consensus 113 np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~ 191 (373)
+|.+.-|++....+......++..+.....+- +.+.+.++ ..+.+|++.+..=++ +..+
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P-----~d~aVt~S------------~rvqly~~~~~~~~k~~srF--- 67 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKHP-----YDFAVTSS------------VRVQLYSSVTRSVRKTFSRF--- 67 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCCC-----CceEEecc------------cEEEEEecchhhhhhhHHhh---
Confidence 46666787765444443333444444322222 44555442 458999988755332 2222
Q ss_pred ccccceeccCCc-eEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc-eeEEEECCEEEEEEeecCCceEEE
Q 046684 192 FAVRLTVWTPNE-SVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF-ATLVSRNQKLTLIGGTCGGDACVW 269 (373)
Q Consensus 192 ~~~~~~~~~~~~-~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~~~g~l~~~gg~~~~~~~i~ 269 (373)
.....+ ..-.+|+|...| ...+.+-.||..+..--.. ..-..+... ......++.+++.++ ++.-..+|
T Consensus 68 ------k~~v~s~~fR~DG~LlaaG-D~sG~V~vfD~k~r~iLR~-~~ah~apv~~~~f~~~d~t~l~s~s-Dd~v~k~~ 138 (487)
T KOG0310|consen 68 ------KDVVYSVDFRSDGRLLAAG-DESGHVKVFDMKSRVILRQ-LYAHQAPVHVTKFSPQDNTMLVSGS-DDKVVKYW 138 (487)
T ss_pred ------ccceeEEEeecCCeEEEcc-CCcCcEEEeccccHHHHHH-HhhccCceeEEEecccCCeEEEecC-CCceEEEE
Confidence 111112 233479999994 5678899999655221111 011111111 122234566666654 44446899
Q ss_pred EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 270 ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 270 ~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
++++ .. . ...+..-. .+.++..+...++.|++.|++++.|-.||.+ +.
T Consensus 139 d~s~----a~-v-~~~l~~ht--------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR--~~ 186 (487)
T KOG0310|consen 139 DLST----AY-V-QAELSGHT--------DYVRCGDISPANDHIVVTGSYDGKVRLWDTR--SL 186 (487)
T ss_pred EcCC----cE-E-EEEecCCc--------ceeEeeccccCCCeEEEecCCCceEEEEEec--cC
Confidence 9976 22 2 22333211 2234566677789999999999999999999 55
No 81
>smart00284 OLF Olfactomedin-like domains.
Probab=96.42 E-value=0.5 Score=40.26 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=98.8
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEEC----CCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEE
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDS----RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGF 225 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~----~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~y 225 (373)
.++|++.+.. .....+..|.. ..+.+...-.+| ....+...++.||.+|.-. .....|..|
T Consensus 35 ~~~wv~~~~~-------~~~~~v~ey~~~~~f~~~~~~~~~~Lp-------~~~~GtG~VVYngslYY~~-~~s~~iiKy 99 (255)
T smart00284 35 SLYWYMPLNT-------RVLRSVREYSSMSDFQMGKNPTDHPLP-------HAGQGTGVVVYNGSLYFNK-FNSHDICRF 99 (255)
T ss_pred ceEEEEcccc-------CCCcEEEEecCHHHHhccCCceEEECC-------CccccccEEEECceEEEEe-cCCccEEEE
Confidence 6788775431 11234555543 234444333443 2345566799999999974 446789999
Q ss_pred ECCCCcEEecccCCCCC------------CCceeEEEECCEEEEEEeecCC--ceEEEEeecC--CCCCCeEEEEeechh
Q 046684 226 DIESNTWRELSAPMADR------------LEFATLVSRNQKLTLIGGTCGG--DACVWELSEG--GDDDIWCLIEKVPIE 289 (373)
Q Consensus 226 d~~~~~w~~~~~~~p~~------------~~~~~~~~~~g~l~~~gg~~~~--~~~i~~~~~~--~~~~~W~~v~~~p~~ 289 (373)
|+.+++-... ..+|.+ .....+++-...|.++-...+. .+.+=+++.. .....|.. ..+..
T Consensus 100 dL~t~~v~~~-~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~ 176 (255)
T smart00284 100 DLTTETYQKE-PLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKR 176 (255)
T ss_pred ECCCCcEEEE-EecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcc
Confidence 9999987543 233321 1223466666778888655433 3666677650 11122333 12222
Q ss_pred hhhhhcCCCCCCCceEEEecCCEEEEEEc----CCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684 290 MGMRLSGGKASWGGTRCAAGNGAICLYRE----VGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS 364 (373)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~ 364 (373)
. ...+++.=|.||++.. .+.-..+||.. ++ + ..-+.+|+..+-. ....+.|.|+
T Consensus 177 s------------a~naFmvCGvLY~~~s~~~~~~~I~yayDt~--t~--~-~~~~~i~f~n~y~----~~s~l~YNP~ 234 (255)
T smart00284 177 S------------ASNAFMICGILYVTRSLGSKGEKVFYAYDTN--TG--K-EGHLDIPFENMYE----YISMLDYNPN 234 (255)
T ss_pred c------------ccccEEEeeEEEEEccCCCCCcEEEEEEECC--CC--c-cceeeeeeccccc----cceeceeCCC
Confidence 1 2445555678999863 22347789999 77 4 2233455555433 4556777776
No 82
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.41 E-value=0.72 Score=41.94 Aligned_cols=261 Identities=9% Similarity=0.004 Sum_probs=128.8
Q ss_pred eEEEEEecCCCeeEEEEeCCCCCccccCCCC---CCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCC
Q 046684 52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDF---LPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVS 128 (373)
Q Consensus 52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~---~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~ 128 (373)
-++++.+.+....++..|-..+. .+.... .|-....++..|.-..+.+|. ..-+++||..|.+..++.++-..
T Consensus 226 plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--rky~ysyDle~ak~~k~~~~~g~ 301 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--RKYLYSYDLETAKVTKLKPPYGV 301 (514)
T ss_pred ceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--ceEEEEeeccccccccccCCCCc
Confidence 34444444444666556655553 333332 233333344445425555553 56789999999999888665422
Q ss_pred C--CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE
Q 046684 129 R--TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC 206 (373)
Q Consensus 129 ~--~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~ 206 (373)
. ....+.+-.+ .+.+++-|.. ..+.+....|+.|-..-.++. ........
T Consensus 302 e~~~~e~FeVShd----------~~fia~~G~~----------G~I~lLhakT~eli~s~KieG--------~v~~~~fs 353 (514)
T KOG2055|consen 302 EEKSMERFEVSHD----------SNFIAIAGNN----------GHIHLLHAKTKELITSFKIEG--------VVSDFTFS 353 (514)
T ss_pred ccchhheeEecCC----------CCeEEEcccC----------ceEEeehhhhhhhhheeeecc--------EEeeEEEe
Confidence 1 2122222111 4455555543 346777777777743333321 11111112
Q ss_pred ECCE-EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE-EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684 207 TRGM-LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV-SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE 284 (373)
Q Consensus 207 ~~g~-ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~-~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~ 284 (373)
-+|+ |++.++ .+.|+.+|+..+.-... ........+.+++ ..+|. |++.|.+..-+.||+.+. ....-.
T Consensus 354 Sdsk~l~~~~~--~GeV~v~nl~~~~~~~r-f~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s-----~~~s~~ 424 (514)
T KOG2055|consen 354 SDSKELLASGG--TGEVYVWNLRQNSCLHR-FVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNS-----CFASTN 424 (514)
T ss_pred cCCcEEEEEcC--CceEEEEecCCcceEEE-EeecCccceeeeeecCCCc-eEEeccCcceEEEeccch-----hhccCC
Confidence 3444 555532 45899999998844333 1222223333343 34667 555555655578998764 222222
Q ss_pred eechhhhhhhcCCCCCCCceEEEecCCEEEEEEc--CCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEec
Q 046684 285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE--VGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLH 362 (373)
Q Consensus 285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (373)
+-|......+.-.. ....+.++..|+.+.. ..+.+-.-+.- +. +.....|..... ........|.
T Consensus 425 PkPik~~dNLtt~I----tsl~Fn~d~qiLAiaS~~~knalrLVHvP--S~----TVFsNfP~~n~~---vg~vtc~aFS 491 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAI----TSLQFNHDAQILAIASRVKKNALRLVHVP--SC----TVFSNFPTSNTK---VGHVTCMAFS 491 (514)
T ss_pred CCchhhhhhhheee----eeeeeCcchhhhhhhhhccccceEEEecc--ce----eeeccCCCCCCc---ccceEEEEec
Confidence 23333333222111 2233334555555542 22334445555 33 445555555333 2345567888
Q ss_pred cccc
Q 046684 363 PSLA 366 (373)
Q Consensus 363 p~l~ 366 (373)
|+--
T Consensus 492 P~sG 495 (514)
T KOG2055|consen 492 PNSG 495 (514)
T ss_pred CCCc
Confidence 8643
No 83
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.36 E-value=0.0012 Score=56.36 Aligned_cols=42 Identities=31% Similarity=0.439 Sum_probs=38.2
Q ss_pred CcchHHHHHHHHhcCC-----hhhHHHhhcccccchhccccccchhh
Q 046684 3 SNLHLDVLANIFSFLS-----PDSLARAKSVCSHWHTCAKLYHLHSV 44 (373)
Q Consensus 3 ~~Lp~dll~~Il~rLP-----~~~l~r~r~Vck~W~~li~~~~f~~~ 44 (373)
+.||+|+|.+||.++= ..+|.++.+|||.|+....+|.+.+.
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 5799999999998764 47999999999999999999999887
No 84
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.35 E-value=0.19 Score=45.21 Aligned_cols=138 Identities=11% Similarity=0.049 Sum_probs=72.4
Q ss_pred ceEEEEECCC-CceeeecCCCccccccceeccCCceEE-ECC-EEEEEEcCCceEEEEEECC-CCcEEecccCCCCCCCc
Q 046684 170 SMVEMYDSRH-DAWQIIGSMPVEFAVRLTVWTPNESVC-TRG-MLYWITSARAYSVIGFDIE-SNTWRELSAPMADRLEF 245 (373)
Q Consensus 170 ~~~~~yd~~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g-~ly~~gg~~~~~i~~yd~~-~~~w~~~~~~~p~~~~~ 245 (373)
..+.+||..+ ++++.+...+. .......+. -++ .+|+. ......|..|++. +++++.+ ...+....-
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~-------~~~~~~l~~spd~~~lyv~-~~~~~~i~~~~~~~~g~l~~~-~~~~~~~~p 82 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDV-------PGQVQPMVISPDKRHLYVG-VRPEFRVLSYRIADDGALTFA-AESPLPGSP 82 (330)
T ss_pred CCEEEEEECCCCceeeeeEEec-------CCCCccEEECCCCCEEEEE-ECCCCcEEEEEECCCCceEEe-eeecCCCCc
Confidence 4678888754 56776655431 111112222 244 46665 3456778888886 4566554 222221122
Q ss_pred eeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCcc
Q 046684 246 ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLG 322 (373)
Q Consensus 246 ~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~ 322 (373)
..++. -+|+.+++.......+.+|++++ +....+.+..++... .++.+.. .+..+|+.+...+.
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~~~~~-----------~~~~~~~~p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDK--DGIPVAPIQIIEGLE-----------GCHSANIDPDNRTLWVPCLKEDR 149 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECC--CCCCCCceeeccCCC-----------cccEeEeCCCCCEEEEeeCCCCE
Confidence 23333 25654444444455688999975 222223333322111 0233322 35678888877788
Q ss_pred EEEEEcc
Q 046684 323 MIIWRED 329 (373)
Q Consensus 323 ~~~yd~~ 329 (373)
+.+||++
T Consensus 150 v~v~d~~ 156 (330)
T PRK11028 150 IRLFTLS 156 (330)
T ss_pred EEEEEEC
Confidence 9999998
No 85
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=0.24 Score=44.81 Aligned_cols=192 Identities=14% Similarity=0.077 Sum_probs=100.0
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceE-EEEEeccCCCCCCCCcccceE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFR-IYVAGGMSDEPRGGATYESMV 172 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~k-l~~~gg~~~~~~~~~~~~~~~ 172 (373)
.--+.+.+|.+..-+++..|-.+|. .+..+.........+... +. ++ .++.+|+. .-+
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~-p~--------G~~~i~~s~rr----------ky~ 282 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFA-PN--------GHSVIFTSGRR----------KYL 282 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeec-CC--------CceEEEecccc----------eEE
Confidence 3446667776666677887887776 333333222211112221 11 33 55555553 568
Q ss_pred EEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEEC
Q 046684 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRN 252 (373)
Q Consensus 173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~ 252 (373)
+.||.++.+-.++.++-. .......... +..++.+..+.| ..+.|......+++|-.- ..++..........-+
T Consensus 283 ysyDle~ak~~k~~~~~g---~e~~~~e~Fe-VShd~~fia~~G-~~G~I~lLhakT~eli~s-~KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYG---VEEKSMERFE-VSHDSNFIAIAG-NNGHIHLLHAKTKELITS-FKIEGVVSDFTFSSDS 356 (514)
T ss_pred EEeeccccccccccCCCC---cccchhheeE-ecCCCCeEEEcc-cCceEEeehhhhhhhhhe-eeeccEEeeEEEecCC
Confidence 999999988887766421 0011111112 334444444433 356677777778877543 2333333333333223
Q ss_pred CEEEEEEeecCCceEEEEeecCCCCCCeEEEEee-chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 253 QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV-PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 253 g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
.+|++++++. .+.+|++.. + ..+... ..+.. .....|...++..+..|...+-|-+||-+
T Consensus 357 k~l~~~~~~G--eV~v~nl~~----~--~~~~rf~D~G~v---------~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 357 KELLASGGTG--EVYVWNLRQ----N--SCLHRFVDDGSV---------HGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred cEEEEEcCCc--eEEEEecCC----c--ceEEEEeecCcc---------ceeeeeecCCCceEEeccCcceEEEeccc
Confidence 4455555544 355666654 3 333331 11111 11355556677777778777888899976
No 86
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.26 E-value=1.1 Score=42.36 Aligned_cols=157 Identities=10% Similarity=0.010 Sum_probs=82.1
Q ss_pred eEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCC
Q 046684 52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTN 131 (373)
Q Consensus 52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~ 131 (373)
.++.....+....++.+|..+.+-..+..............-+..|++........+++++|..+++.+++........
T Consensus 231 ~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~- 309 (448)
T PRK04792 231 KLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT- 309 (448)
T ss_pred EEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc-
Confidence 4444433333467888888776654443221111122222334445554433445689999999998887754321111
Q ss_pred CeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-E
Q 046684 132 PAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-M 210 (373)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ 210 (373)
......++ .+|+...... ....++++|..+++++.+.... .. .......-+| .
T Consensus 310 -~p~wSpDG---------~~I~f~s~~~--------g~~~Iy~~dl~~g~~~~Lt~~g-------~~-~~~~~~SpDG~~ 363 (448)
T PRK04792 310 -EPSWHPDG---------KSLIFTSERG--------GKPQIYRVNLASGKVSRLTFEG-------EQ-NLGGSITPDGRS 363 (448)
T ss_pred -ceEECCCC---------CEEEEEECCC--------CCceEEEEECCCCCEEEEecCC-------CC-CcCeeECCCCCE
Confidence 11111111 4455544222 1357899999999888774211 00 0111122344 4
Q ss_pred EEEEEc-CCceEEEEEECCCCcEEec
Q 046684 211 LYWITS-ARAYSVIGFDIESNTWREL 235 (373)
Q Consensus 211 ly~~gg-~~~~~i~~yd~~~~~w~~~ 235 (373)
+++... .....|+.+|+.+++.+.+
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAMQVL 389 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCeEEc
Confidence 555432 1234788999999888776
No 87
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.21 E-value=1.1 Score=42.00 Aligned_cols=191 Identities=11% Similarity=-0.002 Sum_probs=95.1
Q ss_pred eEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCC
Q 046684 52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTN 131 (373)
Q Consensus 52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~ 131 (373)
.++.....+....++.+|..++.-..+..............-+..|++.....+..+++++|..+++.+++........
T Consensus 212 ~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~- 290 (430)
T PRK00178 212 RIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT- 290 (430)
T ss_pred EEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC-
Confidence 3433333333356777888776655553221111112222233445544333335689999999998877654322111
Q ss_pred CeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EEC-C
Q 046684 132 PAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTR-G 209 (373)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~-g 209 (373)
......++ .+|+...... ....++++|..+++++.+.... ....... .-+ .
T Consensus 291 -~~~~spDg---------~~i~f~s~~~--------g~~~iy~~d~~~g~~~~lt~~~---------~~~~~~~~Spdg~ 343 (430)
T PRK00178 291 -EPFWGKDG---------RTLYFTSDRG--------GKPQIYKVNVNGGRAERVTFVG---------NYNARPRLSADGK 343 (430)
T ss_pred -CeEECCCC---------CEEEEEECCC--------CCceEEEEECCCCCEEEeecCC---------CCccceEECCCCC
Confidence 11111111 4565554221 1347888999888887664321 0111111 223 3
Q ss_pred EEEEEEc-CCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684 210 MLYWITS-ARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 210 ~ly~~gg-~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
.+++... .....+..+|+.+++.+.+ ..... .... ...-+|+.+++....+....+|..+.
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~~l-t~~~~-~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVRIL-TDTSL-DESP-SVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEEEc-cCCCC-CCCc-eECCCCCEEEEEEecCCceEEEEEEC
Confidence 4555432 1234689999999888877 33221 1122 23346666655544433334555543
No 88
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.05 E-value=1.3 Score=41.48 Aligned_cols=192 Identities=8% Similarity=0.051 Sum_probs=94.4
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
+..|...........++++|..+++-+.+...+.... .... .+.+ .+|++..... + ...++
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~--~~~~--SpDG-------~~la~~~~~~-----g---~~~Iy 270 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG--APAW--SPDG-------SKLAFVLSKD-----G---NPEIY 270 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC--CeEE--CCCC-------CEEEEEEccC-----C---CceEE
Confidence 3445444332334689999999998777754432111 1111 1111 4555443221 1 25789
Q ss_pred EEECCCCceeeecCCCccccccceeccCCceEEECC-EEEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684 174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSR 251 (373)
Q Consensus 174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~ 251 (373)
++|..++..+.+...+. ........-+| .+++.... ....|+.+|+.+++.+.+ ... ..........-
T Consensus 271 ~~d~~~~~~~~lt~~~~--------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~-~~~~~~~~~Sp 340 (430)
T PRK00178 271 VMDLASRQLSRVTNHPA--------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFV-GNYNARPRLSA 340 (430)
T ss_pred EEECCCCCeEEcccCCC--------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecC-CCCccceEECC
Confidence 99999988877654321 01111112244 46555321 235788999998888777 221 11111111222
Q ss_pred CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC--CccEEEEEc
Q 046684 252 NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV--GLGMIIWRE 328 (373)
Q Consensus 252 ~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~yd~ 328 (373)
+| .|++... ......+|.++. ++...+.+..-.... .......|..|++.... ...++..+.
T Consensus 341 dg~~i~~~~~-~~~~~~l~~~dl--~tg~~~~lt~~~~~~------------~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 341 DGKTLVMVHR-QDGNFHVAAQDL--QRGSVRILTDTSLDE------------SPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCCEEEEEEc-cCCceEEEEEEC--CCCCEEEccCCCCCC------------CceECCCCCEEEEEEecCCceEEEEEEC
Confidence 44 4444433 222334555544 345665554321110 23344455666665432 235777777
Q ss_pred c
Q 046684 329 D 329 (373)
Q Consensus 329 ~ 329 (373)
.
T Consensus 406 ~ 406 (430)
T PRK00178 406 N 406 (430)
T ss_pred C
Confidence 6
No 89
>PF13854 Kelch_5: Kelch motif
Probab=95.86 E-value=0.024 Score=33.48 Aligned_cols=35 Identities=11% Similarity=-0.064 Sum_probs=28.4
Q ss_pred CCCCCceeEEeeCcEEEEeeCCCC-----ceEEEEEcCcc
Q 046684 82 FLPYPVRPVSSIGSFLLLRPINST-----ILQLVLCNPFT 116 (373)
Q Consensus 82 ~~~~~~~~~~~~~g~l~~~gg~~~-----~~~~~v~np~t 116 (373)
|.+|..++++..++.||++||... .++++++|..+
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 567889999999999999999752 34688888765
No 90
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.72 E-value=0.89 Score=38.87 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=82.4
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEEC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDI 227 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~ 227 (373)
+.+|...-. ...++.+++.+++-+..... . ...++.. +|.+|+.. ...+..+|+
T Consensus 12 g~l~~~D~~----------~~~i~~~~~~~~~~~~~~~~-------~----~~G~~~~~~~g~l~v~~---~~~~~~~d~ 67 (246)
T PF08450_consen 12 GRLYWVDIP----------GGRIYRVDPDTGEVEVIDLP-------G----PNGMAFDRPDGRLYVAD---SGGIAVVDP 67 (246)
T ss_dssp TEEEEEETT----------TTEEEEEETTTTEEEEEESS-------S----EEEEEEECTTSEEEEEE---TTCEEEEET
T ss_pred CEEEEEEcC----------CCEEEEEECCCCeEEEEecC-------C----CceEEEEccCCEEEEEE---cCceEEEec
Confidence 677776533 25789999988775543322 1 1222333 68888884 345566699
Q ss_pred CCCcEEecccCCC-----CCCCceeEEEECCEEEEEEeecCC---c--eEEEEeecCCCCCCeEEEEe-echhhhhhhcC
Q 046684 228 ESNTWRELSAPMA-----DRLEFATLVSRNQKLTLIGGTCGG---D--ACVWELSEGGDDDIWCLIEK-VPIEMGMRLSG 296 (373)
Q Consensus 228 ~~~~w~~~~~~~p-----~~~~~~~~~~~~g~l~~~gg~~~~---~--~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~ 296 (373)
.+++++.+ ...+ ..+.....+.-+|.||+....... . -.+|.++. + .+.+.+.. +..+.
T Consensus 68 ~~g~~~~~-~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~--~-~~~~~~~~~~~~pN------ 137 (246)
T PF08450_consen 68 DTGKVTVL-ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP--D-GKVTVVADGLGFPN------ 137 (246)
T ss_dssp TTTEEEEE-EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET--T-SEEEEEEEEESSEE------
T ss_pred CCCcEEEE-eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC--C-CeEEEEecCccccc------
Confidence 99999887 4432 122222344458888887543221 1 36888886 3 34443332 32221
Q ss_pred CCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 297 GKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 297 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
+..+...++.+|+.......++.||++
T Consensus 138 ------Gi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 138 ------GIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp ------EEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred ------ceEECCcchheeecccccceeEEEecc
Confidence 233344466789988888889999997
No 91
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.70 E-value=1.5 Score=39.31 Aligned_cols=165 Identities=10% Similarity=0.024 Sum_probs=84.6
Q ss_pred eEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc-ceEEEEECCCC-----
Q 046684 107 LQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE-SMVEMYDSRHD----- 180 (373)
Q Consensus 107 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~-~~~~~yd~~~~----- 180 (373)
..+.++||.+.+-..-=.++......++..+.-..+.+ .....+++|.....+ ...... ..+.+|+....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~---~~~~~ivVGT~~~~~-~~~~~~~Gri~v~~i~~~~~~~~ 77 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDST---GKKEYIVVGTAFNYG-EDPEPSSGRILVFEISESPENNF 77 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS------SSEEEEEEEEE--T-TSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccc---cccCEEEEEeccccc-ccccccCcEEEEEEEEcccccce
Confidence 35677888775532211222222223344444222110 015666666432110 011122 66888988774
Q ss_pred ceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc-EEecccCCCCCCCceeEEEECCEEEEEE
Q 046684 181 AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT-WRELSAPMADRLEFATLVSRNQKLTLIG 259 (373)
Q Consensus 181 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~-w~~~~~~~p~~~~~~~~~~~~g~l~~~g 259 (373)
+.+.+...+ ..-.-.+.+.++|.+.+..| +.+..|++..++ +... ...........+.+.++.|++..
T Consensus 78 ~l~~i~~~~-------~~g~V~ai~~~~~~lv~~~g---~~l~v~~l~~~~~l~~~-~~~~~~~~i~sl~~~~~~I~vgD 146 (321)
T PF03178_consen 78 KLKLIHSTE-------VKGPVTAICSFNGRLVVAVG---NKLYVYDLDNSKTLLKK-AFYDSPFYITSLSVFKNYILVGD 146 (321)
T ss_dssp EEEEEEEEE-------ESS-EEEEEEETTEEEEEET---TEEEEEEEETTSSEEEE-EEE-BSSSEEEEEEETTEEEEEE
T ss_pred EEEEEEEEe-------ecCcceEhhhhCCEEEEeec---CEEEEEEccCcccchhh-heecceEEEEEEeccccEEEEEE
Confidence 455554432 11112344567888555533 678888888887 7776 44444445556777788665543
Q ss_pred eecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684 260 GTCGGDACVWELSEGGDDDIWCLIEKVPIEM 290 (373)
Q Consensus 260 g~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~ 290 (373)
....+.++.+++ +..+-..+..-..++
T Consensus 147 --~~~sv~~~~~~~--~~~~l~~va~d~~~~ 173 (321)
T PF03178_consen 147 --AMKSVSLLRYDE--ENNKLILVARDYQPR 173 (321)
T ss_dssp --SSSSEEEEEEET--TTE-EEEEEEESS-B
T ss_pred --cccCEEEEEEEc--cCCEEEEEEecCCCc
Confidence 333467777776 456677777655443
No 92
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.70 E-value=1.8 Score=40.27 Aligned_cols=181 Identities=11% Similarity=0.008 Sum_probs=88.4
Q ss_pred ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684 106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII 185 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~ 185 (373)
...++++|..+++.+.+........ +... .+.+ .++++..... ....++++|..++..+.+
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~~~--~~~~--spDg-------~~l~~~~~~~--------~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGMNG--APAF--SPDG-------SKLAVSLSKD--------GNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCCcc--ceEE--CCCC-------CEEEEEECCC--------CCccEEEEECCCCCEEEC
Confidence 4679999999987666554332221 1222 1111 4465543221 135789999988877666
Q ss_pred cCCCccccccceeccCCceEEECC-EEEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecC
Q 046684 186 GSMPVEFAVRLTVWTPNESVCTRG-MLYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG 263 (373)
Q Consensus 186 ~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~ 263 (373)
...+.. ........+| .|++.... ....|+.+|..++++..+ ........ .....-+|+.+++.....
T Consensus 274 ~~~~~~--------~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~~~~~~-~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 274 TNGPGI--------DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFRGGYNA-SPSWSPDGDLIAFVHREG 343 (417)
T ss_pred CCCCCC--------CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCcc-CeEECCCCCEEEEEEccC
Confidence 543210 0001111245 45544321 234788999988888766 22211111 112233566555554443
Q ss_pred CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--ccEEEEEcc
Q 046684 264 GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--LGMIIWRED 329 (373)
Q Consensus 264 ~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~yd~~ 329 (373)
....+|.++. ++..++.+..-.... .......++.|++..... ..+.+++.+
T Consensus 344 ~~~~i~~~d~--~~~~~~~l~~~~~~~------------~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 344 GGFNIAVMDL--DGGGERVLTDTGLDE------------SPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CceEEEEEeC--CCCCeEEccCCCCCC------------CceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 3345666554 345454443211100 133444556666654322 346666655
No 93
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.65 E-value=1.2 Score=38.21 Aligned_cols=152 Identities=10% Similarity=-0.007 Sum_probs=79.1
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES 229 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~ 229 (373)
++.+..||.+ +.+-+|+..+..=+....+..+ ++...-+-..+-+++ --+++.+.......-+|+++
T Consensus 109 g~~VAcGGLd----------N~Csiy~ls~~d~~g~~~v~r~--l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 109 GNFVACGGLD----------NKCSIYPLSTRDAEGNVRVSRE--LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET 175 (343)
T ss_pred CCeEEecCcC----------ceeEEEecccccccccceeeee--ecCccceeEEEEEcC-CCceEecCCCceEEEEEccc
Confidence 6788889887 5788898875421111111100 001111222223344 33334344456677789988
Q ss_pred CcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe
Q 046684 230 NTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA 308 (373)
Q Consensus 230 ~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 308 (373)
.+-... ..-.. ......+.-.++..|+.|+.+.. ..+|++.+ . ..+...+.-. .......+.
T Consensus 176 g~~~~~-f~GH~gDV~slsl~p~~~ntFvSg~cD~~-aklWD~R~----~--~c~qtF~ghe---------sDINsv~ff 238 (343)
T KOG0286|consen 176 GQQTQV-FHGHTGDVMSLSLSPSDGNTFVSGGCDKS-AKLWDVRS----G--QCVQTFEGHE---------SDINSVRFF 238 (343)
T ss_pred ceEEEE-ecCCcccEEEEecCCCCCCeEEecccccc-eeeeeccC----c--ceeEeecccc---------cccceEEEc
Confidence 765543 11100 00111122226788888876654 48999976 3 2222222111 111344555
Q ss_pred cCCEEEEEEcCCccEEEEEccccCC
Q 046684 309 GNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 309 ~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.+|.-|..|......-.||++ .+
T Consensus 239 P~G~afatGSDD~tcRlyDlR--aD 261 (343)
T KOG0286|consen 239 PSGDAFATGSDDATCRLYDLR--AD 261 (343)
T ss_pred cCCCeeeecCCCceeEEEeec--CC
Confidence 567777777777778888888 65
No 94
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.61 E-value=1.7 Score=39.30 Aligned_cols=115 Identities=9% Similarity=0.125 Sum_probs=67.2
Q ss_pred CCEEEEEEcCCceEEEEEECCCC------cEEecccCCC-CC-C-Ccee-EEEE--CCEEEEEE-eec-----CCceEEE
Q 046684 208 RGMLYWITSARAYSVIGFDIESN------TWRELSAPMA-DR-L-EFAT-LVSR--NQKLTLIG-GTC-----GGDACVW 269 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~------~w~~~~~~~p-~~-~-~~~~-~~~~--~g~l~~~g-g~~-----~~~~~i~ 269 (373)
+|+.+|+. ..+.+...|+... .|..+....+ .. + .+.. ++.. ++++|+.. +.. ...-++|
T Consensus 205 dg~~~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 205 SGRLVWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCcEEEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 56666663 3378888885433 3554411111 01 1 1111 2322 57888843 211 1114788
Q ss_pred EeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcCCccEEEEEccccCCcccEEEeccc
Q 046684 270 ELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREVGLGMIIWREDEDKRKWEWVWVGGC 343 (373)
Q Consensus 270 ~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~ 343 (373)
.++. .+++.+..++.+.... ...+...+. .+|+..+.++.+.++|.+ +. +.+...
T Consensus 283 ViD~----~t~kvi~~i~vG~~~~---------~iavS~Dgkp~lyvtn~~s~~VsViD~~--t~----k~i~~i 338 (352)
T TIGR02658 283 VVDA----KTGKRLRKIELGHEID---------SINVSQDAKPLLYALSTGDKTLYIFDAE--TG----KELSSV 338 (352)
T ss_pred EEEC----CCCeEEEEEeCCCcee---------eEEECCCCCeEEEEeCCCCCcEEEEECc--CC----eEEeee
Confidence 8876 8899999988665321 233344456 778888778889999999 77 555554
No 95
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.38 E-value=1.3 Score=36.77 Aligned_cols=112 Identities=14% Similarity=0.020 Sum_probs=71.4
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE 169 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~ 169 (373)
..+-|..++-.|| .+.+.+||..|++-.+ ..............+.. ..|++-|+.+
T Consensus 67 ~s~Dnskf~s~Gg---Dk~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNee---------sSVv~SgsfD---------- 122 (307)
T KOG0316|consen 67 LSSDNSKFASCGG---DKAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEE---------SSVVASGSFD---------- 122 (307)
T ss_pred ccccccccccCCC---CceEEEEEcccCeeee--ecccccceeeEEEecCc---------ceEEEecccc----------
Confidence 4455666777777 6889999999987532 01111111112222211 4466666554
Q ss_pred ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEE
Q 046684 170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWR 233 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~ 233 (373)
..+.++|.++++-+.++.+ .........+.+.++..+. |.....+-.||+..++-.
T Consensus 123 ~s~r~wDCRS~s~ePiQil-------dea~D~V~Si~v~~heIva-GS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQIL-------DEAKDGVSSIDVAEHEIVA-GSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred ceeEEEEcccCCCCccchh-------hhhcCceeEEEecccEEEe-eccCCcEEEEEeecceee
Confidence 6789999999988877776 3445555667778887777 456778999999876544
No 96
>PTZ00420 coronin; Provisional
Probab=95.28 E-value=3.1 Score=40.32 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=70.7
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-----ECCEEEEEEeecCC---ceEEEEeecCCCCCC
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-----RNQKLTLIGGTCGG---DACVWELSEGGDDDI 279 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-----~~g~l~~~gg~~~~---~~~i~~~~~~~~~~~ 279 (373)
+|.+.+.+ .....+..||+.+++-... ............+. .++..++.+|.++. .+.+|++.. ...
T Consensus 178 dG~lLat~-s~D~~IrIwD~Rsg~~i~t-l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~---~~~ 252 (568)
T PTZ00420 178 KGNLLSGT-CVGKHMHIIDPRKQEIASS-FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN---TTS 252 (568)
T ss_pred CCCEEEEE-ecCCEEEEEECCCCcEEEE-EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC---CCC
Confidence 57766654 3456799999987653221 11111111111111 24455555554432 489999874 121
Q ss_pred eEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEE
Q 046684 280 WCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGV 359 (373)
Q Consensus 280 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 359 (373)
-.....+...... .........+.+|+.|..+..+.+|+.. .+ .-..+.... . .....|+
T Consensus 253 pl~~~~ld~~~~~---------L~p~~D~~tg~l~lsGkGD~tIr~~e~~--~~--~~~~l~~~~-----s--~~p~~g~ 312 (568)
T PTZ00420 253 ALVTMSIDNASAP---------LIPHYDESTGLIYLIGKGDGNCRYYQHS--LG--SIRKVNEYK-----S--CSPFRSF 312 (568)
T ss_pred ceEEEEecCCccc---------eEEeeeCCCCCEEEEEECCCeEEEEEcc--CC--cEEeecccc-----c--CCCccce
Confidence 1111122111100 0011223357888888788889999998 77 433332211 1 3345678
Q ss_pred Eecccccceee
Q 046684 360 LLHPSLACACI 370 (373)
Q Consensus 360 ~~~p~l~~~~~ 370 (373)
.|-|.-.+.|.
T Consensus 313 ~f~Pkr~~dv~ 323 (568)
T PTZ00420 313 GFLPKQICDVY 323 (568)
T ss_pred EEccccccCch
Confidence 89998766543
No 97
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.24 E-value=0.47 Score=41.30 Aligned_cols=106 Identities=14% Similarity=0.275 Sum_probs=63.7
Q ss_pred ccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEE-----cCCceEEEEEECCCCcEEecccCC--
Q 046684 168 YESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWIT-----SARAYSVIGFDIESNTWRELSAPM-- 239 (373)
Q Consensus 168 ~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~g-----g~~~~~i~~yd~~~~~w~~~~~~~-- 239 (373)
....+..||..+.+|.....- .... -...... ++++|+.| +.....+..||.++++|..+....
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~-------i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~ 85 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG-------ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSN 85 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC-------ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccc
Confidence 367899999999999987653 1111 1223334 67788887 225678999999999998884312
Q ss_pred --CCCCCceeEEEEC-CEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684 240 --ADRLEFATLVSRN-QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK 285 (373)
Q Consensus 240 --p~~~~~~~~~~~~-g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~ 285 (373)
|.+.........+ ..+++.|........+...+. .+|..+..
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG----s~W~~i~~ 130 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG----SSWSSIGS 130 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC----CceEeccc
Confidence 2222212222223 356666654333333444444 88988866
No 98
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.13 E-value=2.9 Score=39.23 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=93.3
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
+..|+..........++++|..+++-+.+...+.... ...+-.++ .+|++....+ + ...++
T Consensus 215 g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~--~~~~SpDG---------~~l~~~~s~~-----g---~~~Iy 275 (433)
T PRK04922 215 GKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING--APSFSPDG---------RRLALTLSRD-----G---NPEIY 275 (433)
T ss_pred CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc--CceECCCC---------CEEEEEEeCC-----C---CceEE
Confidence 3344444332335679999999988776654432211 11111111 4565543222 1 25789
Q ss_pred EEECCCCceeeecCCCccccccceeccCCceEE-ECCE-EEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEE
Q 046684 174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGM-LYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVS 250 (373)
Q Consensus 174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~ 250 (373)
++|..++.-+.+...+. ......+ -+|+ +++.... ....++.+|..+++.+.+ .. ...........
T Consensus 276 ~~d~~~g~~~~lt~~~~---------~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~-~g~~~~~~~~S 344 (433)
T PRK04922 276 VMDLGSRQLTRLTNHFG---------IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TF-QGNYNARASVS 344 (433)
T ss_pred EEECCCCCeEECccCCC---------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ec-CCCCccCEEEC
Confidence 99998887665543210 0111122 3454 4444321 134688899988888776 22 11111111122
Q ss_pred ECC-EEEEEEeecCC-ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcC--CccEEEE
Q 046684 251 RNQ-KLTLIGGTCGG-DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV--GLGMIIW 326 (373)
Q Consensus 251 ~~g-~l~~~gg~~~~-~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~y 326 (373)
-+| .|++.....+. .+.+|+++. +..+.+..-.. . ........|..|++.... ...++.+
T Consensus 345 pDG~~Ia~~~~~~~~~~I~v~d~~~----g~~~~Lt~~~~---~---------~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 345 PDGKKIAMVHGSGGQYRIAVMDLST----GSVRTLTPGSL---D---------ESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCCCEEEEEECCCCceeEEEEECCC----CCeEECCCCCC---C---------CCceECCCCCEEEEEEecCCceEEEEE
Confidence 244 45554432222 255555543 55544432111 0 023444456666665432 3468888
Q ss_pred EccccCC
Q 046684 327 REDEDKR 333 (373)
Q Consensus 327 d~~~~~~ 333 (373)
|.+ .+
T Consensus 409 ~~~--g~ 413 (433)
T PRK04922 409 STD--GR 413 (433)
T ss_pred ECC--CC
Confidence 887 55
No 99
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.08 E-value=1.7 Score=36.21 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=85.0
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
+|.-++..|. .+.+..|||..+...+. ...+.--+++...+.+ +.-++.+|-+ ..++
T Consensus 28 dGnY~ltcGs--drtvrLWNp~rg~likt------YsghG~EVlD~~~s~D-----nskf~s~GgD----------k~v~ 84 (307)
T KOG0316|consen 28 DGNYCLTCGS--DRTVRLWNPLRGALIKT------YSGHGHEVLDAALSSD-----NSKFASCGGD----------KAVQ 84 (307)
T ss_pred CCCEEEEcCC--CceEEeecccccceeee------ecCCCceeeecccccc-----ccccccCCCC----------ceEE
Confidence 3444444442 57789999998775432 1122222333222221 3334444332 4789
Q ss_pred EEECCCCce-eeecCCCccccccceeccCCceEEECC-EEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684 174 MYDSRHDAW-QIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR 251 (373)
Q Consensus 174 ~yd~~~~~W-~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~ 251 (373)
++|-.|++= |+...- . .....+.+|. .-.++.|....++..+|..++..+.+ ..+.....+...+.+
T Consensus 85 vwDV~TGkv~Rr~rgH--------~--aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi-Qildea~D~V~Si~v 153 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGH--------L--AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI-QILDEAKDGVSSIDV 153 (307)
T ss_pred EEEcccCeeeeecccc--------c--ceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc-chhhhhcCceeEEEe
Confidence 999998762 222111 0 1112233443 33333356678899999999999888 566777777777888
Q ss_pred CCEEEEEEeecCCceEEEEeec
Q 046684 252 NQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 252 ~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
.+...+.|..++. +..|++..
T Consensus 154 ~~heIvaGS~DGt-vRtydiR~ 174 (307)
T KOG0316|consen 154 AEHEIVAGSVDGT-VRTYDIRK 174 (307)
T ss_pred cccEEEeeccCCc-EEEEEeec
Confidence 8888887765554 58888865
No 100
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.00 E-value=3.2 Score=38.96 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=93.2
Q ss_pred EEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCC
Q 046684 53 FLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNP 132 (373)
Q Consensus 53 l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~ 132 (373)
++..........++.+|..++.-..+..............-+..|++.....+..+++++|+.+++.+++....... .
T Consensus 218 la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~--~ 295 (433)
T PRK04922 218 LAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID--T 295 (433)
T ss_pred EEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc--c
Confidence 44333333335677888877665555322111111122223445655443334568999999999877664332111 1
Q ss_pred eEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECC-E
Q 046684 133 AVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRG-M 210 (373)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g-~ 210 (373)
......++ .+++...... + ...++++|..+++.+.+.... ......++ -+| .
T Consensus 296 ~~~~spDG---------~~l~f~sd~~-----g---~~~iy~~dl~~g~~~~lt~~g---------~~~~~~~~SpDG~~ 349 (433)
T PRK04922 296 EPTWAPDG---------KSIYFTSDRG-----G---RPQIYRVAASGGSAERLTFQG---------NYNARASVSPDGKK 349 (433)
T ss_pred ceEECCCC---------CEEEEEECCC-----C---CceEEEEECCCCCeEEeecCC---------CCccCEEECCCCCE
Confidence 11221111 3455443222 1 246888898888877664221 11111122 244 4
Q ss_pred EEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684 211 LYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 211 ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
+++.... ....|..+|+.+++.+.+ ...+ ..... ...-+|+.+++.........+|.++.
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~~L-t~~~-~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVRTL-TPGS-LDESP-SFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeEEC-CCCC-CCCCc-eECCCCCEEEEEEecCCceEEEEEEC
Confidence 5554322 234799999998888776 3322 11111 23346665444443333335665554
No 101
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.66 E-value=0.87 Score=38.85 Aligned_cols=121 Identities=16% Similarity=0.223 Sum_probs=67.8
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE 169 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~ 169 (373)
++.-+|-++...-. .+.+...||.+..=..+|....... -+-.+..++. +++.+-- ...
T Consensus 195 ~atpdGsvwyasla--gnaiaridp~~~~aev~p~P~~~~~-gsRriwsdpi--------g~~witt----------wg~ 253 (353)
T COG4257 195 CATPDGSVWYASLA--GNAIARIDPFAGHAEVVPQPNALKA-GSRRIWSDPI--------GRAWITT----------WGT 253 (353)
T ss_pred EECCCCcEEEEecc--ccceEEcccccCCcceecCCCcccc-cccccccCcc--------CcEEEec----------cCC
Confidence 45557777775321 3567888999986666654322111 1111111111 4455431 123
Q ss_pred ceEEEEECCCCceeeecCCCccccccceeccCCceEEEC--CEEEEEEcCCceEEEEEECCCCcEEecccCCC
Q 046684 170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTR--GMLYWITSARAYSVIGFDIESNTWRELSAPMA 240 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p 240 (373)
..+..||+.+.+|.+-+- |. ..-...+ ..++ |.+ |+.....+.|..||+++.+++.++.+.|
T Consensus 254 g~l~rfdPs~~sW~eypL-Pg------s~arpys-~rVD~~grV-W~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPL-PG------SKARPYS-MRVDRHGRV-WLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred ceeeEeCcccccceeeeC-CC------CCCCcce-eeeccCCcE-EeeccccCceeecCcccceEEEecCCCC
Confidence 568999999999987642 21 1111112 3343 344 4423456889999999999999944433
No 102
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.65 E-value=3.3 Score=37.50 Aligned_cols=203 Identities=13% Similarity=0.138 Sum_probs=103.0
Q ss_pred EEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECC--CCceeee
Q 046684 108 QLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR--HDAWQII 185 (373)
Q Consensus 108 ~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~--~~~W~~~ 185 (373)
..+.+|..++++..+...... ..++..... + .. ..||+..... .....+..|+.. +++.+.+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~-~~Ps~l~~~-~--~~-----~~LY~~~e~~-------~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEG-ENPSWLAVS-P--DG-----RRLYVVNEGS-------GDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEES-SSECCEEE--T--TS-----SEEEEEETTS-------STTTEEEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCCCceEeeeecCC-CCCceEEEE-e--CC-----CEEEEEEccc-------cCCCCEEEEEECCCcceeEEe
Confidence 456668899998876543222 222222232 1 11 7788886431 123455555544 4677777
Q ss_pred cCCCccccccceeccCCceEEE--CC-EEEEEEcCCceEEEEEECCCC-cEEecc--------cCCC--CCCCceeEEEE
Q 046684 186 GSMPVEFAVRLTVWTPNESVCT--RG-MLYWITSARAYSVIGFDIESN-TWRELS--------APMA--DRLEFATLVSR 251 (373)
Q Consensus 186 ~~~p~~~~~~~~~~~~~~~~~~--~g-~ly~~gg~~~~~i~~yd~~~~-~w~~~~--------~~~p--~~~~~~~~~~~ 251 (373)
...+. .......+.+ ++ .+|+. ......+..|++..+ .-.... .|-+ +.....+.+..
T Consensus 80 ~~~~~-------~g~~p~~i~~~~~g~~l~va-ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 80 NSVPS-------GGSSPCHIAVDPDGRFLYVA-NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEEEE-------SSSCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred eeecc-------CCCCcEEEEEecCCCEEEEE-EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence 65531 1111122333 34 45554 455778888988764 322220 0111 11222333332
Q ss_pred --CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 252 --NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 252 --~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
+|+..++.......+.+|+++. .+.+.+....+..+... +.+...+...+..+|+++...+.+.+|+..
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~--~~~~l~~~~~~~~~~G~-------GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDD--DTGKLTPVDSIKVPPGS-------GPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-T--TS-TEEEEEEEECSTTS-------SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeC--CCceEEEeeccccccCC-------CCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 4554444334444588888876 44457665544222211 111233333467899999888888888887
Q ss_pred ccCCcccEEEeccccc
Q 046684 330 EDKRKWEWVWVGGCCL 345 (373)
Q Consensus 330 ~~~~~~~W~~~~~~~~ 345 (373)
.++. +++.+...+.
T Consensus 223 ~~~g--~~~~~~~~~~ 236 (345)
T PF10282_consen 223 PSDG--SLTEIQTIST 236 (345)
T ss_dssp TTTT--EEEEEEEEES
T ss_pred ccCC--ceeEEEEeee
Confidence 3355 6776655543
No 103
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.60 E-value=4.9 Score=39.26 Aligned_cols=217 Identities=12% Similarity=0.136 Sum_probs=113.0
Q ss_pred CCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCC
Q 046684 84 PYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPR 163 (373)
Q Consensus 84 ~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~ 163 (373)
+-...++.+.|++|-+.++. ..++.||+=.+.++.- ...-+...+..+. +++|+.+.+.|+.+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k--lgQLlVweWqsEsYVl----KQQgH~~~i~~l~-------YSpDgq~iaTG~eD---- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK--LGQLLVWEWQSESYVL----KQQGHSDRITSLA-------YSPDGQLIATGAED---- 371 (893)
T ss_pred eeeEEEecccCCEEEEcCCc--cceEEEEEeeccceee----eccccccceeeEE-------ECCCCcEEEeccCC----
Confidence 33344455667777765543 5689999888777642 2222222333333 12337888888765
Q ss_pred CCCcccceEEEEECCCCcee-eecCCCccccccceeccCCceE--EECCEEEEEEcCCceEEEEEECCCC-cEEecccCC
Q 046684 164 GGATYESMVEMYDSRHDAWQ-IIGSMPVEFAVRLTVWTPNESV--CTRGMLYWITSARAYSVIGFDIESN-TWRELSAPM 239 (373)
Q Consensus 164 ~~~~~~~~~~~yd~~~~~W~-~~~~~p~~~~~~~~~~~~~~~~--~~~g~ly~~gg~~~~~i~~yd~~~~-~w~~~~~~~ 239 (373)
..|.+||...+--- ..... ....+++ ...|...+- ..-.+.+-++|+.+- .++....|-
T Consensus 372 ------gKVKvWn~~SgfC~vTFteH----------ts~Vt~v~f~~~g~~lls-sSLDGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 372 ------GKVKVWNTQSGFCFVTFTEH----------TSGVTAVQFTARGNVLLS-SSLDGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred ------CcEEEEeccCceEEEEeccC----------CCceEEEEEEecCCEEEE-eecCCeEEeeeecccceeeeecCCC
Confidence 46888887664321 11111 0111111 123433333 234567889998764 455552332
Q ss_pred CCCCCceeEEEEC--CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEE
Q 046684 240 ADRLEFATLVSRN--QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYR 317 (373)
Q Consensus 240 p~~~~~~~~~~~~--g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 317 (373)
| ..+..++.+ |.|.++|+.+...+.+|.+++ ++ .+..+.. + ++.....++...+.+++.+
T Consensus 435 p---~QfscvavD~sGelV~AG~~d~F~IfvWS~qT----Gq--llDiLsG----H-----EgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 435 P---IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT----GQ--LLDILSG----H-----EGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred c---eeeeEEEEcCCCCEEEeeccceEEEEEEEeec----Ce--eeehhcC----C-----CCcceeeEEccccCeEEec
Confidence 2 233445555 899999887776688888866 32 2222221 1 1100111233344466666
Q ss_pred cCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684 318 EVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS 364 (373)
Q Consensus 318 ~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~ 364 (373)
..+..|-++|.- . .|..++.++.... ..++.|.|.
T Consensus 497 SWDkTVRiW~if--~---s~~~vEtl~i~sd-------vl~vsfrPd 531 (893)
T KOG0291|consen 497 SWDKTVRIWDIF--S---SSGTVETLEIRSD-------VLAVSFRPD 531 (893)
T ss_pred cccceEEEEEee--c---cCceeeeEeeccc-------eeEEEEcCC
Confidence 666667777775 2 2344444444433 235667765
No 104
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.59 E-value=4 Score=38.22 Aligned_cols=223 Identities=11% Similarity=0.022 Sum_probs=102.2
Q ss_pred CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684 62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP 141 (373)
Q Consensus 62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~ 141 (373)
...++..|........+.....+......+.-+..|++.........++++|..+++-+.+...+... .+... .+.
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~--~~~~~--SPD 250 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN--SAPAW--SPD 250 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc--cceEE--CCC
Confidence 35677777654443433221111112222222334444433233467999999998766665443211 11111 111
Q ss_pred CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE-EEEEEcC-Cc
Q 046684 142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITSA-RA 219 (373)
Q Consensus 142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg~-~~ 219 (373)
+ .+|++....+ ....++.+|..++..+.+.... .........-+|+ +++.... ..
T Consensus 251 G-------~~la~~~~~~--------g~~~Iy~~d~~~~~~~~lt~~~--------~~~~~~~wSpDG~~l~f~s~~~g~ 307 (427)
T PRK02889 251 G-------RTLAVALSRD--------GNSQIYTVNADGSGLRRLTQSS--------GIDTEPFFSPDGRSIYFTSDRGGA 307 (427)
T ss_pred C-------CEEEEEEccC--------CCceEEEEECCCCCcEECCCCC--------CCCcCeEEcCCCCEEEEEecCCCC
Confidence 1 4555543222 1357888888777666554321 0011111223454 5544321 23
Q ss_pred eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC--ceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684 220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG--DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG 297 (373)
Q Consensus 220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~--~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~ 297 (373)
..++.+|..+++.+.+ .. ...........-+|+..++....+. .+.+|+++. .....+..-...
T Consensus 308 ~~Iy~~~~~~g~~~~l-t~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~----g~~~~lt~~~~~-------- 373 (427)
T PRK02889 308 PQIYRMPASGGAAQRV-TF-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT----GQVTALTDTTRD-------- 373 (427)
T ss_pred cEEEEEECCCCceEEE-ec-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC----CCeEEccCCCCc--------
Confidence 5688888887777666 21 1111111112235544333332222 255555543 544444321100
Q ss_pred CCCCCceEEEecCCEEEEEEcC--CccEEEEEcc
Q 046684 298 KASWGGTRCAAGNGAICLYREV--GLGMIIWRED 329 (373)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~~~~--~~~~~~yd~~ 329 (373)
........+..|++.... ...+...+..
T Consensus 374 ----~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 374 ----ESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred ----cCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 124444556666665532 2347777776
No 105
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.53 E-value=3.1 Score=36.70 Aligned_cols=153 Identities=8% Similarity=0.086 Sum_probs=67.3
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEEC--CCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEEC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDS--RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDI 227 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~ 227 (373)
.+-|++|... .+|-. ...+|+....-... ........+.+.++..|++| . ...++.-.=
T Consensus 28 ~~G~~VG~~g-------------~il~T~DGG~tW~~~~~~~~~----~~~~~l~~I~f~~~~g~ivG-~-~g~ll~T~D 88 (302)
T PF14870_consen 28 NHGWAVGAYG-------------TILKTTDGGKTWQPVSLDLDN----PFDYHLNSISFDGNEGWIVG-E-PGLLLHTTD 88 (302)
T ss_dssp S-EEEEETTT-------------EEEEESSTTSS-EE-----S---------EEEEEEEETTEEEEEE-E-TTEEEEESS
T ss_pred CEEEEEecCC-------------EEEEECCCCccccccccCCCc----cceeeEEEEEecCCceEEEc-C-CceEEEecC
Confidence 6778887543 23322 24569887532110 10111223445677888875 2 233444333
Q ss_pred CCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684 228 ESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC 306 (373)
Q Consensus 228 ~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~ 306 (373)
.-++|+.++.+.+.+.....+..+ ++.+.+++.. -.||.-.+ ...+|+.+..-...... -..
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~----G~iy~T~D--gG~tW~~~~~~~~gs~~-----------~~~ 151 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR----GAIYRTTD--GGKTWQAVVSETSGSIN-----------DIT 151 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT------EEEESS--TTSSEEEEE-S----EE-----------EEE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC----CcEEEeCC--CCCCeeEcccCCcceeE-----------eEE
Confidence 567999984333333333444444 4556665432 26999888 78899987653332221 222
Q ss_pred EecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684 307 AAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 307 ~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
...++.+++++..-.-....|+- .. .|.....
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G--~~--~w~~~~r 183 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPG--QT--TWQPHNR 183 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT---S--S-EEEE-
T ss_pred ECCCCcEEEEECcccEEEEecCC--Cc--cceEEcc
Confidence 33455655555443334566777 66 7875543
No 106
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.53 E-value=2.6 Score=35.78 Aligned_cols=104 Identities=11% Similarity=0.145 Sum_probs=49.2
Q ss_pred CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEEC-CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684 209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRN-QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP 287 (373)
Q Consensus 209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~-g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p 287 (373)
+.+.+.+ .....+..||+.+.+-... .. .....-..+.... +.+++ ++..+..+.+|++.. . +.+..+.
T Consensus 105 ~~~~~~~-~~~~~i~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~-~~~~~~~i~i~d~~~----~--~~~~~~~ 174 (289)
T cd00200 105 GRILSSS-SRDKTIKVWDVETGKCLTT-LR-GHTDWVNSVAFSPDGTFVA-SSSQDGTIKLWDLRT----G--KCVATLT 174 (289)
T ss_pred CCEEEEe-cCCCeEEEEECCCcEEEEE-ec-cCCCcEEEEEEcCcCCEEE-EEcCCCcEEEEEccc----c--ccceeEe
Confidence 3555553 3467899999985543332 12 1111112233333 44444 444344578998854 1 2222222
Q ss_pred hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
..... . .......++..+++++..+.+.+||.. +.
T Consensus 175 ~~~~~--------i-~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~ 209 (289)
T cd00200 175 GHTGE--------V-NSVAFSPDGEKLLSSSSDGTIKLWDLS--TG 209 (289)
T ss_pred cCccc--------c-ceEEECCCcCEEEEecCCCcEEEEECC--CC
Confidence 11000 0 122222344344445556789999998 65
No 107
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.46 E-value=1.9 Score=40.56 Aligned_cols=113 Identities=15% Similarity=0.047 Sum_probs=65.5
Q ss_pred cEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEE
Q 046684 95 SFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEM 174 (373)
Q Consensus 95 g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~ 174 (373)
--||+.|. ..+++.+|...++|.. |+........++-++.. +.++++|+.. ..|+.
T Consensus 146 cDly~~gs---g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~---------hgLla~Gt~~----------g~VEf 201 (703)
T KOG2321|consen 146 CDLYLVGS---GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEE---------HGLLACGTED----------GVVEF 201 (703)
T ss_pred ccEEEeec---CcceEEEEcccccccc--ccccccccceeeeecCc---------cceEEecccC----------ceEEE
Confidence 33666665 5789999999998853 33222222222222211 6688888754 46899
Q ss_pred EECCCCceee-------ecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEec
Q 046684 175 YDSRHDAWQI-------IGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWREL 235 (373)
Q Consensus 175 yd~~~~~W~~-------~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~ 235 (373)
+|+++.+=-. +...|.. .......+..+-|+-|.+..|...+.++.||+.+.+=..+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~----~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGG----DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred ecchhhhhheeeecccccCCCccc----cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 9998765321 1112211 1111122333445477777788899999999987654433
No 108
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=94.14 E-value=0.84 Score=39.00 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=51.3
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC---------cccceEEEEECCCCceeeecCCCccc
Q 046684 122 LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA---------TYESMVEMYDSRHDAWQIIGSMPVEF 192 (373)
Q Consensus 122 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~---------~~~~~~~~yd~~~~~W~~~~~~p~~~ 192 (373)
+...|.+|+.+++.++.... . .-++++||+.-.+.+.. +-...|+..|.+-+..+.-. +|.-
T Consensus 81 vGdvP~aRYGHt~~vV~SrG-K------ta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~-lpEl- 151 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRG-K------TACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHT-LPEL- 151 (337)
T ss_pred cCCCCcccccceEEEEEECC-c------EEEEEECCcccCCccccchhhcceeccCCCeEEEEecccccccccc-chhh-
Confidence 46788999999998887331 1 44788888652221111 12346777888887765432 2210
Q ss_pred cccceeccCCceEEECCEEEEEEcC
Q 046684 193 AVRLTVWTPNESVCTRGMLYWITSA 217 (373)
Q Consensus 193 ~~~~~~~~~~~~~~~~g~ly~~gg~ 217 (373)
......+.+..-++.+|++||.
T Consensus 152 ---~dG~SFHvslar~D~VYilGGH 173 (337)
T PF03089_consen 152 ---QDGQSFHVSLARNDCVYILGGH 173 (337)
T ss_pred ---cCCeEEEEEEecCceEEEEccE
Confidence 2333445556678999999864
No 109
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.98 E-value=5.2 Score=37.15 Aligned_cols=144 Identities=13% Similarity=0.017 Sum_probs=75.7
Q ss_pred eeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684 63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP 141 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~ 141 (373)
..++.+|..+++...+.......... .-+.+| .+++........+++++|..+++.+.+.........+ ....++
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~--~~s~dg- 289 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP--SWSPDG- 289 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE--EECCCC-
Confidence 56777888776554443221111122 223344 4555444334567999999998877765432211111 111110
Q ss_pred CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCEEEEEEcC--C
Q 046684 142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGMLYWITSA--R 218 (373)
Q Consensus 142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~ly~~gg~--~ 218 (373)
.+|+...... + ...++++|..+++++.+.... ......+ .-+|+.+++... .
T Consensus 290 --------~~l~~~s~~~-----g---~~~iy~~d~~~~~~~~l~~~~---------~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 290 --------KSIAFTSDRG-----G---SPQIYMMDADGGEVRRLTFRG---------GYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred --------CEEEEEECCC-----C---CceEEEEECCCCCEEEeecCC---------CCccCeEECCCCCEEEEEEccCC
Confidence 4555544322 1 247889998888877664321 1111112 235655544322 2
Q ss_pred ceEEEEEECCCCcEEec
Q 046684 219 AYSVIGFDIESNTWREL 235 (373)
Q Consensus 219 ~~~i~~yd~~~~~w~~~ 235 (373)
...|..+|+.++.++.+
T Consensus 345 ~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVL 361 (417)
T ss_pred ceEEEEEeCCCCCeEEc
Confidence 34799999998877766
No 110
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.97 E-value=6 Score=37.80 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=65.1
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCC-----eEEEEEcCCCCCCCCCceEEEEEeccCCCC
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNP-----AVGIVMEGPAQHGPFPNFRIYVAGGMSDEP 162 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~-----~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~ 162 (373)
-...+|.+|+... ...++.+|+.|++ |+.-...+...... ..++.+ . .+||+.. .+
T Consensus 57 Pvv~~g~vy~~~~---~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~-----~-----~~V~v~~-~~--- 119 (488)
T cd00216 57 PLVVDGDMYFTTS---HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWD-----P-----RKVFFGT-FD--- 119 (488)
T ss_pred CEEECCEEEEeCC---CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEcc-----C-----CeEEEec-CC---
Confidence 4566999999776 4678999999876 76422111001000 111111 0 5666532 22
Q ss_pred CCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEc-------CCceEEEEEECCCC--c
Q 046684 163 RGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS-------ARAYSVIGFDIESN--T 231 (373)
Q Consensus 163 ~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg-------~~~~~i~~yd~~~~--~ 231 (373)
..+..+|.++++ |+.-...+.. .......+.++.++.+|+-.. .....++++|.+++ .
T Consensus 120 -------g~v~AlD~~TG~~~W~~~~~~~~~----~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 120 -------GRLVALDAETGKQVWKFGNNDQVP----PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred -------CeEEEEECCCCCEeeeecCCCCcC----cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 368888988766 8765432100 001122344667777776421 12467999999876 4
Q ss_pred EEec
Q 046684 232 WREL 235 (373)
Q Consensus 232 w~~~ 235 (373)
|+.-
T Consensus 189 W~~~ 192 (488)
T cd00216 189 WRFY 192 (488)
T ss_pred eEee
Confidence 7653
No 111
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.54 E-value=4.1 Score=34.51 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=49.7
Q ss_pred CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684 209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP 287 (373)
Q Consensus 209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p 287 (373)
+.+.+. +...+.+..||+.+.+-... ...... .-..+... +++.+++++. +..+.+|++.. ...+..+.
T Consensus 147 ~~~l~~-~~~~~~i~i~d~~~~~~~~~-~~~~~~-~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~------~~~~~~~~ 216 (289)
T cd00200 147 GTFVAS-SSQDGTIKLWDLRTGKCVAT-LTGHTG-EVNSVAFSPDGEKLLSSSS-DGTIKLWDLST------GKCLGTLR 216 (289)
T ss_pred CCEEEE-EcCCCcEEEEEcccccccee-EecCcc-ccceEEECCCcCEEEEecC-CCcEEEEECCC------Cceecchh
Confidence 344444 34467788999875432222 111111 11122222 4434444443 44578998853 22232221
Q ss_pred hhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCCccEEEEEccccCC
Q 046684 288 IEMGMRLSGGKASWGGTRCAAG-NGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
..... ...+... ++.+++.++..+.+.+||.. +.
T Consensus 217 ~~~~~----------i~~~~~~~~~~~~~~~~~~~~i~i~~~~--~~ 251 (289)
T cd00200 217 GHENG----------VNSVAFSPDGYLLASGSEDGTIRVWDLR--TG 251 (289)
T ss_pred hcCCc----------eEEEEEcCCCcEEEEEcCCCcEEEEEcC--Cc
Confidence 10000 1222233 45666666657789999998 65
No 112
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.49 E-value=6.7 Score=36.78 Aligned_cols=223 Identities=11% Similarity=0.014 Sum_probs=102.9
Q ss_pred CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684 62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG 140 (373)
Q Consensus 62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~ 140 (373)
...++..|.....-..+.....+.... .-+.+| .|...........++++|..+++-+.+...+.... .... .+
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p-~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~--~~~~--SP 252 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSP-AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG--APAF--SP 252 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeee-EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC--CeEE--CC
Confidence 357777776544333332211111111 223344 33333222234679999999887776655443221 1111 11
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECCE-EEEEEcC-
Q 046684 141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGM-LYWITSA- 217 (373)
Q Consensus 141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~-ly~~gg~- 217 (373)
.+ .+|+...... + ...++++|..++..+.+...+. ......+ -+|+ |++....
T Consensus 253 DG-------~~La~~~~~~-----g---~~~I~~~d~~tg~~~~lt~~~~---------~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 253 DG-------SKLAFALSKT-----G---SLNLYVMDLASGQIRQVTDGRS---------NNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred CC-------CEEEEEEcCC-----C---CcEEEEEECCCCCEEEccCCCC---------CcCceEECCCCCEEEEEeCCC
Confidence 11 4565543221 1 2468999998887776654321 0111122 2454 4444221
Q ss_pred CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCC
Q 046684 218 RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGG 297 (373)
Q Consensus 218 ~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~ 297 (373)
....++.+|+.+++-..+ ... ..........-+|+.+++.........+|.++. ++..++.+......
T Consensus 309 g~~~Iy~~d~~~g~~~~l-t~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl--~~g~~~~Lt~~~~~-------- 376 (429)
T PRK03629 309 GRPQVYKVNINGGAPQRI-TWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL--ATGGVQVLTDTFLD-------- 376 (429)
T ss_pred CCceEEEEECCCCCeEEe-ecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEEC--CCCCeEEeCCCCCC--------
Confidence 134788889988776666 221 111111122335554444333322224444443 34666655431100
Q ss_pred CCCCCceEEEecCCEEEEEEcCC--ccEEEEEcc
Q 046684 298 KASWGGTRCAAGNGAICLYREVG--LGMIIWRED 329 (373)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~~yd~~ 329 (373)
....+...|..|++..... ..+.+.+.+
T Consensus 377 ----~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 377 ----ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred ----CCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 0244444555566554322 246666776
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=93.32 E-value=4.1 Score=37.07 Aligned_cols=104 Identities=16% Similarity=0.268 Sum_probs=58.0
Q ss_pred ceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCc-EEecccCCCCCCCcee
Q 046684 170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNT-WRELSAPMADRLEFAT 247 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~-w~~~~~~~p~~~~~~~ 247 (373)
..+.+||...+. .+..+|.. ......+.+ +|-.|.........|..+|+...+ +..+ +.+.... ..
T Consensus 369 ~~vkiwdlks~~--~~a~Fpgh-------t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--~l~~~~~-v~ 436 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKFPGH-------TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--QLDEKKE-VN 436 (506)
T ss_pred ceEEEEEcCCcc--ccccCCCC-------CCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee--ecccccc-ce
Confidence 568889987776 55555421 111122233 333333334445569999997644 3333 3333221 11
Q ss_pred EEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684 248 LVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEM 290 (373)
Q Consensus 248 ~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~ 290 (373)
...+ -|....++| ..+.||..+. .++.|+++...+.-.
T Consensus 437 s~~fD~SGt~L~~~g---~~l~Vy~~~k--~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAG---SDLQVYICKK--KTKSWTEIKELADHS 476 (506)
T ss_pred eEEEcCCCCeEEeec---ceeEEEEEec--ccccceeeehhhhcc
Confidence 2222 355555553 3478999887 789999998877543
No 114
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.14 E-value=2.5 Score=40.75 Aligned_cols=116 Identities=12% Similarity=0.182 Sum_probs=68.0
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCC--------CCCeEEEEEcCCCCCCCCCceEEEEEeccC
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSR--------TNPAVGIVMEGPAQHGPFPNFRIYVAGGMS 159 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~--------~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~ 159 (373)
-...+|.||+... ...++.+|..|++ |+.-+..+... .....++.+ ++||+.. .+
T Consensus 65 Pvv~~g~vyv~s~---~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-----------~~v~v~t-~d 129 (527)
T TIGR03075 65 PLVVDGVMYVTTS---YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-----------GKVFFGT-LD 129 (527)
T ss_pred CEEECCEEEEECC---CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-----------CEEEEEc-CC
Confidence 4456999999766 4578899999876 76433222111 111223332 6777643 22
Q ss_pred CCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcC----CceEEEEEECCCCc--
Q 046684 160 DEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSA----RAYSVIGFDIESNT-- 231 (373)
Q Consensus 160 ~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~----~~~~i~~yd~~~~~-- 231 (373)
..+..+|.++++ |+.-..-+. .......+.++.+|.+|+-... ....+.+||.++++
T Consensus 130 ----------g~l~ALDa~TGk~~W~~~~~~~~-----~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 130 ----------ARLVALDAKTGKVVWSKKNGDYK-----AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred ----------CEEEEEECCCCCEEeeccccccc-----ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 368999998876 865432110 0111223456788988875321 24689999999874
Q ss_pred EEec
Q 046684 232 WREL 235 (373)
Q Consensus 232 w~~~ 235 (373)
|+.-
T Consensus 195 W~~~ 198 (527)
T TIGR03075 195 WRRY 198 (527)
T ss_pred Eecc
Confidence 7643
No 115
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.82 E-value=6 Score=34.35 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=57.9
Q ss_pred eEEEEEECCCCcEEecccCCCCCCCceeEE--------EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh
Q 046684 220 YSVIGFDIESNTWRELSAPMADRLEFATLV--------SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG 291 (373)
Q Consensus 220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~--------~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~ 291 (373)
.-|..||.++++-+.+ .....+....... -.+++|++.-.....++-+|.++. .+..=+++..-|...-
T Consensus 78 SHVH~yd~e~~~VrLL-Wkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr--~~g~~~~L~~~ps~KG 154 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLL-WKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDR--RTGKAEKLSSNPSLKG 154 (339)
T ss_pred ceEEEEEcCCCeEEEE-EecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcc--cCCceeeccCCCCcCc
Confidence 4588999999876655 3322211111111 237899998776666688999986 5555555554443321
Q ss_pred hhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccE
Q 046684 292 MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEW 337 (373)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W 337 (373)
... ...+|+..++ +......+.+||+. ++ +|
T Consensus 155 ~~~-------~D~a~F~i~~----~~~g~~~i~~~Dli--~~--~~ 185 (339)
T PF09910_consen 155 TLV-------HDYACFGINN----FHKGVSGIHCLDLI--SG--KW 185 (339)
T ss_pred eEe-------eeeEEEeccc----cccCCceEEEEEcc--CC--eE
Confidence 110 0234444321 11234589999999 99 88
No 116
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.72 E-value=11 Score=38.61 Aligned_cols=107 Identities=7% Similarity=-0.030 Sum_probs=55.6
Q ss_pred CCEEEEEEcCCceEEEEEECCCCc--EEecccCCCCCCCc-eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684 208 RGMLYWITSARAYSVIGFDIESNT--WRELSAPMADRLEF-ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE 284 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~--w~~~~~~~p~~~~~-~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~ 284 (373)
+|...+.| ...+.|..||+.+.. ...+ ..+... ..+...++..++.++. +..+.+|++........|..+.
T Consensus 629 ~g~~latg-s~dg~I~iwD~~~~~~~~~~~----~~h~~~V~~v~f~~~~~lvs~s~-D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 629 SGRSLAFG-SADHKVYYYDLRNPKLPLCTM----IGHSKTVSYVRFVDSSTLVSSST-DNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred CCCEEEEE-eCCCeEEEEECCCCCccceEe----cCCCCCEEEEEEeCCCEEEEEEC-CCEEEEEeCCCCccccCCcceE
Confidence 35666654 456789999987643 2222 111111 1233345665555543 4458999986411112354444
Q ss_pred eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
.+..-. ..........++.+++.++.++.+.+|+..
T Consensus 703 ~~~gh~---------~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 703 SFMGHT---------NVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEcCCC---------CCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 433210 000122333355667777777789999987
No 117
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.67 E-value=8.9 Score=35.96 Aligned_cols=170 Identities=11% Similarity=-0.023 Sum_probs=81.8
Q ss_pred eeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCC
Q 046684 63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGP 141 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~ 141 (373)
..++.+|..+.+-..+.......... .-+.+| .|++........+++++|..+++.+++....... .... . .+.
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~-~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~--~~~~-w-SPD 297 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAP-AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNN--TEPT-W-FPD 297 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCe-EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCc--CceE-E-CCC
Confidence 56667777665544442211111112 234444 4555433333567999999998887765432211 1111 1 111
Q ss_pred CCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE-EEEEEc-CCc
Q 046684 142 AQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITS-ARA 219 (373)
Q Consensus 142 ~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg-~~~ 219 (373)
+ .+|+...... ....++.+|..++.-+.+.... . ........-+|+ +++... ...
T Consensus 298 G-------~~I~f~s~~~--------g~~~Iy~~d~~~g~~~~lt~~~-------~-~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 298 S-------QNLAYTSDQA--------GRPQVYKVNINGGAPQRITWEG-------S-QNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred C-------CEEEEEeCCC--------CCceEEEEECCCCCeEEeecCC-------C-CccCEEECCCCCEEEEEEccCCC
Confidence 1 3454443221 1347888888877665553221 0 011111223454 444332 123
Q ss_pred eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecC
Q 046684 220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG 263 (373)
Q Consensus 220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~ 263 (373)
..+..+|+++++.+.+ ... ...... ...-+|+..++....+
T Consensus 355 ~~I~~~dl~~g~~~~L-t~~-~~~~~p-~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 355 QHIAKQDLATGGVQVL-TDT-FLDETP-SIAPNGTMVIYSSSQG 395 (429)
T ss_pred ceEEEEECCCCCeEEe-CCC-CCCCCc-eECCCCCEEEEEEcCC
Confidence 5688899999998877 322 111122 2334666555554443
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.43 E-value=7.1 Score=35.61 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=89.2
Q ss_pred ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECC-----CC
Q 046684 106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR-----HD 180 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~-----~~ 180 (373)
.+.+.+||..+++-...-.... ..-.++...... ..+.+.|+++ ..+-++|.+ ..
T Consensus 265 D~TV~lWD~~~g~p~~s~~~~~-k~Vq~l~wh~~~---------p~~LLsGs~D----------~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 265 DKTVKLWDVDTGKPKSSITHHG-KKVQTLEWHPYE---------PSVLLSGSYD----------GTVALKDCRDPSNSGK 324 (463)
T ss_pred CceEEEEEcCCCCcceehhhcC-CceeEEEecCCC---------ceEEEecccc----------ceEEeeeccCccccCc
Confidence 5678999999987544222111 111122222211 3455555554 456666665 34
Q ss_pred ceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC---cEEecccCCCCCCCceeEEEECCE-EE
Q 046684 181 AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN---TWRELSAPMADRLEFATLVSRNQK-LT 256 (373)
Q Consensus 181 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~---~w~~~~~~~p~~~~~~~~~~~~g~-l~ 256 (373)
.|+.-..... .... .....+++.+...+.+.-||..+. .|+.. + ..... .++..-... =+
T Consensus 325 ~wk~~g~VEk------v~w~------~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-A-Hd~~I--Sgl~~n~~~p~~ 388 (463)
T KOG0270|consen 325 EWKFDGEVEK------VAWD------PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-A-HDDEI--SGLSVNIQTPGL 388 (463)
T ss_pred eEEeccceEE------EEec------CCCceeEEEecCCceEEeeecCCCCCceeEEE-e-ccCCc--ceEEecCCCCcc
Confidence 5776555421 1111 112223333444556666676654 35443 1 11111 122221111 12
Q ss_pred EEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 257 LIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 257 ~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
+..+.....+.+|++.. +..+=.....+...+.. ++.+......+|.+||....+.++|.. ++
T Consensus 389 l~t~s~d~~Vklw~~~~--~~~~~v~~~~~~~~rl~----------c~~~~~~~a~~la~GG~k~~~~vwd~~--~~ 451 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDV--DSPKSVKEHSFKLGRLH----------CFALDPDVAFTLAFGGEKAVLRVWDIF--TN 451 (463)
T ss_pred eeeccccceEEEEeecC--CCCccccccccccccee----------ecccCCCcceEEEecCccceEEEeecc--cC
Confidence 22233334489999987 55555555555555532 344444566788999988788899988 66
No 119
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.21 E-value=7.6 Score=34.14 Aligned_cols=246 Identities=16% Similarity=0.131 Sum_probs=123.1
Q ss_pred CceEEEEEecCCCeeEEEEeCCCCCcccc-CCC-CCCCCceeEEeeCcEEEEeeCC---CCceEEEEEcCcccceeccCC
Q 046684 50 PAWFLALPTRNRGLCCYVHNPVSDKWHVL-SLD-FLPYPVRPVSSIGSFLLLRPIN---STILQLVLCNPFTRQFRYLPL 124 (373)
Q Consensus 50 ~~~l~~~~~~~~~~~~~~~d~~~~~w~~~-~~~-~~~~~~~~~~~~~g~l~~~gg~---~~~~~~~v~np~t~~w~~lp~ 124 (373)
.+..++|..+.. ....+||+.+..-... ..+ .-..+.|.+.+.+|..+..... .....+-|||.. +.++++..
T Consensus 16 ~~~avafaRRPG-~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E 93 (305)
T PF07433_consen 16 RPEAVAFARRPG-TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGE 93 (305)
T ss_pred CCeEEEEEeCCC-cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeE
Confidence 445555544433 6777799988765433 222 2223556677776554444332 235578999999 67777776
Q ss_pred CCCCCCCCe-EEEEEcCCCCCCCCCceEEEE-EeccCCCCCCCC------cccceEEEEECCCCceeeecCCCccccccc
Q 046684 125 LNVSRTNPA-VGIVMEGPAQHGPFPNFRIYV-AGGMSDEPRGGA------TYESMVEMYDSRHDAWQIIGSMPVEFAVRL 196 (373)
Q Consensus 125 ~~~~~~~~~-~~~~~~~~~~~~~~~~~kl~~-~gg~~~~~~~~~------~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~ 196 (373)
.+..--.+. +.+..++ ..++| -||..+.+..+. .....+-..|..+++=.....+|.+. .
T Consensus 94 ~~s~GIGPHel~l~pDG---------~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~---~ 161 (305)
T PF07433_consen 94 FPSHGIGPHELLLMPDG---------ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL---H 161 (305)
T ss_pred ecCCCcChhhEEEcCCC---------CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc---c
Confidence 664333333 3333221 23444 467664432221 22334555678887643333333210 1
Q ss_pred eeccCCceEEECCEEEEEE---cC---CceEEEEEECCCCcEEecccCCCC---CCCceeEEEE--CCEEEEEEeecCCc
Q 046684 197 TVWTPNESVCTRGMLYWIT---SA---RAYSVIGFDIESNTWRELSAPMAD---RLEFATLVSR--NQKLTLIGGTCGGD 265 (373)
Q Consensus 197 ~~~~~~~~~~~~g~ly~~g---g~---~~~~i~~yd~~~~~w~~~~~~~p~---~~~~~~~~~~--~g~l~~~gg~~~~~ 265 (373)
.-...+-.+--+|.+.+-. |. ...-+..++.. +..+.++.+... -..+.+.+.. +|.+..+..-.+..
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 1111222223345554443 11 11222222222 223333122111 1122333333 45567676666666
Q ss_pred eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 266 ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 266 ~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
+.+|+..+ .+|.....++.. +.++..++. |++....+.++..+..
T Consensus 241 ~~~~d~~t----g~~~~~~~l~D~--------------cGva~~~~~-f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 241 VAVWDAAT----GRLLGSVPLPDA--------------CGVAPTDDG-FLVSSGQGQLIRLSPD 285 (305)
T ss_pred EEEEECCC----CCEeeccccCce--------------eeeeecCCc-eEEeCCCccEEEccCc
Confidence 88998755 999888888763 444555444 6665555566666665
No 120
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.21 E-value=10 Score=35.60 Aligned_cols=156 Identities=9% Similarity=-0.059 Sum_probs=78.3
Q ss_pred eEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCC
Q 046684 52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT 130 (373)
Q Consensus 52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~ 130 (373)
.++.....+....++.+|..+.....+.......... .-+-+| .|++........+++++|..+++.+++...+....
T Consensus 215 ~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~ 293 (435)
T PRK05137 215 EITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT 293 (435)
T ss_pred EEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC
Confidence 3433333333367888888777665553222111122 223344 45444433445689999999988777654332111
Q ss_pred CCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-
Q 046684 131 NPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG- 209 (373)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g- 209 (373)
. .... +.+ .+|+...... + ...++++|..++..+.+...+. ........-+|
T Consensus 294 ~--~~~s--pDG-------~~i~f~s~~~-----g---~~~Iy~~d~~g~~~~~lt~~~~--------~~~~~~~SpdG~ 346 (435)
T PRK05137 294 S--PSYS--PDG-------SQIVFESDRS-----G---SPQLYVMNADGSNPRRISFGGG--------RYSTPVWSPRGD 346 (435)
T ss_pred c--eeEc--CCC-------CEEEEEECCC-----C---CCeEEEEECCCCCeEEeecCCC--------cccCeEECCCCC
Confidence 1 1111 110 4455443221 1 3478899988777666543211 01111122344
Q ss_pred EEEEEEc-CCceEEEEEECCCCcEEec
Q 046684 210 MLYWITS-ARAYSVIGFDIESNTWREL 235 (373)
Q Consensus 210 ~ly~~gg-~~~~~i~~yd~~~~~w~~~ 235 (373)
.+++... .....+..+|+.++..+.+
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEec
Confidence 4444431 2235788999887766655
No 121
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.20 E-value=15 Score=37.56 Aligned_cols=198 Identities=10% Similarity=-0.033 Sum_probs=84.9
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
++.+++.++. ...+.+||..+++-.. .+... ......... . .+ ++.++.|+.+ ..+.
T Consensus 587 ~~~~L~Sgs~--Dg~v~iWd~~~~~~~~--~~~~~-~~v~~v~~~-~--~~-----g~~latgs~d----------g~I~ 643 (793)
T PLN00181 587 DPTLLASGSD--DGSVKLWSINQGVSIG--TIKTK-ANICCVQFP-S--ES-----GRSLAFGSAD----------HKVY 643 (793)
T ss_pred CCCEEEEEcC--CCEEEEEECCCCcEEE--EEecC-CCeEEEEEe-C--CC-----CCEEEEEeCC----------CeEE
Confidence 5555555553 4678999987754321 11111 111111111 1 11 5566666554 4688
Q ss_pred EEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC----cEEecccCCCCCCCc--
Q 046684 174 MYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN----TWRELSAPMADRLEF-- 245 (373)
Q Consensus 174 ~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~----~w~~~~~~~p~~~~~-- 245 (373)
+||.++.. ...+... . ..-..+.+.++...+.+ .....|..+|+... .+..+ ..+..+...
T Consensus 644 iwD~~~~~~~~~~~~~h--------~-~~V~~v~f~~~~~lvs~-s~D~~ikiWd~~~~~~~~~~~~l-~~~~gh~~~i~ 712 (793)
T PLN00181 644 YYDLRNPKLPLCTMIGH--------S-KTVSYVRFVDSSTLVSS-STDNTLKLWDLSMSISGINETPL-HSFMGHTNVKN 712 (793)
T ss_pred EEECCCCCccceEecCC--------C-CCEEEEEEeCCCEEEEE-ECCCEEEEEeCCCCccccCCcce-EEEcCCCCCee
Confidence 99987543 1111110 0 00112233455554443 34566888888643 23222 111111111
Q ss_pred eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEE
Q 046684 246 ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMII 325 (373)
Q Consensus 246 ~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 325 (373)
......++.+++.|+ .+..+.+|+... ....|+........................+...++..++.++..+.|.+
T Consensus 713 ~v~~s~~~~~lasgs-~D~~v~iw~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 713 FVGLSVSDGYIATGS-ETNEVFVYHKAF--PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred EEEEcCCCCEEEEEe-CCCEEEEEECCC--CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 111223455444444 445578998754 22233322111100000000000000012222235566677777778888
Q ss_pred EEc
Q 046684 326 WRE 328 (373)
Q Consensus 326 yd~ 328 (373)
+|+
T Consensus 790 ~~~ 792 (793)
T PLN00181 790 LEM 792 (793)
T ss_pred Eec
Confidence 875
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=91.90 E-value=13 Score=35.97 Aligned_cols=240 Identities=12% Similarity=0.034 Sum_probs=121.6
Q ss_pred eEEEEeCCCCCccccCCCCCC--CCceeEEee-CcEEEEeeCCCCceEEEEEcCccccee-ccCCCCCCCCCCeEEEEEc
Q 046684 64 CCYVHNPVSDKWHVLSLDFLP--YPVRPVSSI-GSFLLLRPINSTILQLVLCNPFTRQFR-YLPLLNVSRTNPAVGIVME 139 (373)
Q Consensus 64 ~~~~~d~~~~~w~~~~~~~~~--~~~~~~~~~-~g~l~~~gg~~~~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~~~ 139 (373)
.+..||+.. .|...+....+ +.--+++-+ +|.++-.|. ...+.-||+.+.+-+ .+.+....-+ +++...
T Consensus 48 ~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~---sg~i~EwDl~~lk~~~~~d~~gg~IW--siai~p- 120 (691)
T KOG2048|consen 48 NIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL---SGSITEWDLHTLKQKYNIDSNGGAIW--SIAINP- 120 (691)
T ss_pred cEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecC---CceEEEEecccCceeEEecCCCccee--EEEeCC-
Confidence 455588765 68765433323 333346655 788888877 578888999886532 2222222211 222211
Q ss_pred CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEE-EEEcCC
Q 046684 140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLY-WITSAR 218 (373)
Q Consensus 140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly-~~gg~~ 218 (373)
. +.+..+|..+ + .+..++...+.=+--..++.+ -...-.+..++... +++|..
T Consensus 121 ~---------~~~l~Igcdd-----G-----vl~~~s~~p~~I~~~r~l~rq-------~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 121 E---------NTILAIGCDD-----G-----VLYDFSIGPDKITYKRSLMRQ-------KSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred c---------cceEEeecCC-----c-----eEEEEecCCceEEEEeecccc-------cceEEEEEecCCccEEEeccc
Confidence 1 4566666443 1 445555555554433333211 01111233454444 666666
Q ss_pred ceEEEEEECCCCcEEecccCCCCCCC---c----eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh
Q 046684 219 AYSVIGFDIESNTWRELSAPMADRLE---F----ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG 291 (373)
Q Consensus 219 ~~~i~~yd~~~~~w~~~~~~~p~~~~---~----~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~ 291 (373)
...|.++|..+++=-.+ ..+...+. . -++..+.+...+.| .....+.+|+.+. . +.+.....-
T Consensus 175 Dg~Iriwd~~~~~t~~~-~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg-DS~G~V~FWd~~~----g--TLiqS~~~h-- 244 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHI-ITMQLDRLSKREPTIVWSVLFLRDSTIASG-DSAGTVTFWDSIF----G--TLIQSHSCH-- 244 (691)
T ss_pred CceEEEEEcCCCceEEE-eeecccccccCCceEEEEEEEeecCcEEEe-cCCceEEEEcccC----c--chhhhhhhh--
Confidence 67799999987754443 33332221 1 12333444444444 3344489999876 2 222211110
Q ss_pred hhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccc
Q 046684 292 MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVP 355 (373)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 355 (373)
..+ ..+.++...+|.++. .|..+.+.-|... +++-+|.....-....++.+..+.
T Consensus 245 ---~ad---Vl~Lav~~~~d~vfs-aGvd~~ii~~~~~--~~~~~wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 245 ---DAD---VLALAVADNEDRVFS-AGVDPKIIQYSLT--TNKSEWVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred ---hcc---eeEEEEcCCCCeEEE-ccCCCceEEEEec--CCccceeeeccccCCcccceeeee
Confidence 011 112333333455554 5677789999888 654478776555555555433333
No 123
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.88 E-value=11 Score=35.22 Aligned_cols=179 Identities=13% Similarity=0.010 Sum_probs=93.2
Q ss_pred CeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcC
Q 046684 62 GLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEG 140 (373)
Q Consensus 62 ~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~ 140 (373)
...++.+|..+++-..+...... .....-+.+| .+.+........+++++|..+++++++...+.....+ ...-++
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p--~~SPDG 288 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNG--NFVEDD 288 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCcc--EECCCC
Confidence 46788888877665555332111 1111224444 4555444344678999999999988875544311111 111111
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE-EEEEEcC--
Q 046684 141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITSA-- 217 (373)
Q Consensus 141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg~-- 217 (373)
.+|+...... ...+++++|..+++.+.+.... ... ....-+|+ +.+....
T Consensus 289 ---------~~I~F~Sdr~--------g~~~Iy~~dl~~g~~~rlt~~g---------~~~-~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 289 ---------KRIVFVSDRL--------GYPNIFMKKLNSGSVEQVVFHG---------KNN-SSVSTYKNYIVYSSRETN 341 (419)
T ss_pred ---------CEEEEEECCC--------CCceEEEEECCCCCeEeCccCC---------CcC-ceECCCCCEEEEEEcCCC
Confidence 5677665332 2357999999988876654321 011 12233444 3333211
Q ss_pred -----CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684 218 -----RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 218 -----~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
....|..+|+++++++.+ .... ..... ...-+|+..++....+....++.++.
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~~L-T~~~-~~~~p-~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIRRL-TANG-VNQFP-RFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred cccCCCCcEEEEEECCCCCeEEC-CCCC-CcCCe-EECCCCCEEEEEEccCCcEEEEEEec
Confidence 125799999999999888 3322 11122 23345654333333333334555544
No 124
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.49 E-value=13 Score=35.23 Aligned_cols=192 Identities=11% Similarity=0.074 Sum_probs=99.1
Q ss_pred eeCcEEEEeeCCCCceEEEEEcCccc-c-eeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684 92 SIGSFLLLRPINSTILQLVLCNPFTR-Q-FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE 169 (373)
Q Consensus 92 ~~~g~l~~~gg~~~~~~~~v~np~t~-~-w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~ 169 (373)
+.+|...+.+.. ...+.+||...+ . -+.+..+.... .++++.. ++++++.|+.+
T Consensus 212 s~d~~~l~s~s~--D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p----------~g~~i~Sgs~D---------- 267 (456)
T KOG0266|consen 212 SPDGSYLLSGSD--DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSP----------DGNLLVSGSDD---------- 267 (456)
T ss_pred CCCCcEEEEecC--CceEEEeeccCCCeEEEEecCCCCce--EEEEecC----------CCCEEEEecCC----------
Confidence 445654444432 567888888333 2 23333333322 2222221 15677777665
Q ss_pred ceEEEEECCCCceeeecCCCccccccceeccCCceEE--ECCEEEEEEcCCceEEEEEECCCCcEE---ecccCCCCCCC
Q 046684 170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC--TRGMLYWITSARAYSVIGFDIESNTWR---ELSAPMADRLE 244 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~g~ly~~gg~~~~~i~~yd~~~~~w~---~~~~~~p~~~~ 244 (373)
..+.++|.++++=...-.. +. ....++. -+|.+.+.+ .....+..||+.+++.. .+ ........
T Consensus 268 ~tvriWd~~~~~~~~~l~~-------hs--~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~ 336 (456)
T KOG0266|consen 268 GTVRIWDVRTGECVRKLKG-------HS--DGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLL-SGAENSAP 336 (456)
T ss_pred CcEEEEeccCCeEEEeeec-------cC--CceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecc-cCCCCCCc
Confidence 5689999988543222111 11 1112222 346666664 55888999999999854 22 11111111
Q ss_pred ceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE-ecCCEEEEEEcCCccE
Q 046684 245 FATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-AGNGAICLYREVGLGM 323 (373)
Q Consensus 245 ~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 323 (373)
...+....+..|++.+..+..+.+|++........|.. ..... . + .+..+ ..++...+.|.....+
T Consensus 337 ~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~---~~~~~-~---~------~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 337 VTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG---HSNLV-R---C------IFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred eeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc---cCCcc-e---e------EecccccCCCCeEEEEeCCceE
Confidence 12222234555666666666689999975111112222 11111 0 0 11222 3467777777777889
Q ss_pred EEEEccccCC
Q 046684 324 IIWREDEDKR 333 (373)
Q Consensus 324 ~~yd~~~~~~ 333 (373)
.++|+. +.
T Consensus 404 ~~~~~~--s~ 411 (456)
T KOG0266|consen 404 YVWDSS--SG 411 (456)
T ss_pred EEEeCC--cc
Confidence 999999 65
No 125
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=91.48 E-value=3.3 Score=37.00 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=76.9
Q ss_pred eEEEEEcCccc-----ceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc
Q 046684 107 LQLVLCNPFTR-----QFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA 181 (373)
Q Consensus 107 ~~~~v~np~t~-----~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~ 181 (373)
..+.+|+.... +.+.+......-.-.+++.+. +++++..|. .+.+|+...++
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~-----------~~lv~~~g~------------~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN-----------GRLVVAVGN------------KLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET-----------TEEEEEETT------------EEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC-----------CEEEEeecC------------EEEEEEccCcc
Confidence 67888888774 444444333332223334343 665555443 57888888887
Q ss_pred -eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEE
Q 046684 182 -WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIG 259 (373)
Q Consensus 182 -W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~g 259 (373)
+....... ...........++.+++-.....-.++.|+.+..+...+ ......+....+..+ ++. .+++
T Consensus 119 ~l~~~~~~~-------~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v-a~d~~~~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 119 TLLKKAFYD-------SPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV-ARDYQPRWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp SEEEEEEE--------BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE-EEESS-BEEEEEEEE-SSS-EEEE
T ss_pred cchhhheec-------ceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEE-EecCCCccEEEEEEecCCc-EEEE
Confidence 77776652 222344556677866655334455677888877778777 333334433444555 666 5666
Q ss_pred eecCCceEEEEeec
Q 046684 260 GTCGGDACVWELSE 273 (373)
Q Consensus 260 g~~~~~~~i~~~~~ 273 (373)
+.....+.++..+.
T Consensus 190 ~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 190 GDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTSEEEEEEE-S
T ss_pred EcCCCeEEEEEECC
Confidence 66666667777663
No 126
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.34 E-value=10 Score=34.52 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=73.0
Q ss_pred CCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCC-----CC--CCCeEEEEEcCCCCC
Q 046684 72 SDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNV-----SR--TNPAVGIVMEGPAQH 144 (373)
Q Consensus 72 ~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~-----~~--~~~~~~~~~~~~~~~ 144 (373)
.+.|..+... .....-++..+|.+|.++. ...+++++...+ -.++.+... .. .....+...
T Consensus 189 ~~~Wt~l~~~--~~~~~DIi~~kGkfYAvD~---~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~------ 256 (373)
T PLN03215 189 GNVLKALKQM--GYHFSDIIVHKGQTYALDS---IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECC------ 256 (373)
T ss_pred CCeeeEccCC--CceeeEEEEECCEEEEEcC---CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEEC------
Confidence 3678877532 2223458899999999865 466777774321 122221110 11 111122222
Q ss_pred CCCCceEEEEEeccCCCC-C-----C-CCcccceEEEE--ECCCCceeeecCCCccccccceeccCCce--------EEE
Q 046684 145 GPFPNFRIYVAGGMSDEP-R-----G-GATYESMVEMY--DSRHDAWQIIGSMPVEFAVRLTVWTPNES--------VCT 207 (373)
Q Consensus 145 ~~~~~~kl~~~gg~~~~~-~-----~-~~~~~~~~~~y--d~~~~~W~~~~~~p~~~~~~~~~~~~~~~--------~~~ 207 (373)
++++++....... . . .......+++| |.+.++|.++..+.... ..-....+. ...
T Consensus 257 -----GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~a---LFlG~~~s~sv~a~e~pG~k 328 (373)
T PLN03215 257 -----GELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNA---FVMATDTCFSVLAHEFYGCL 328 (373)
T ss_pred -----CEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeE---EEEECCccEEEecCCCCCcc
Confidence 6788876532100 0 0 00112345555 77788999999886421 000001110 123
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEec
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWREL 235 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~ 235 (373)
++++|+.. .....+||++.++-+.+
T Consensus 329 ~NcIYFtd---d~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 329 PNSIYFTE---DTMPKVFKLDNGNGSSI 353 (373)
T ss_pred CCEEEEEC---CCcceEEECCCCCccce
Confidence 58899883 44556899988875444
No 127
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=91.24 E-value=8.8 Score=32.92 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=58.2
Q ss_pred EEEEEEcCCceEEEEEECCCCcEEecccCCCCCC--CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684 210 MLYWITSARAYSVIGFDIESNTWRELSAPMADRL--EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP 287 (373)
Q Consensus 210 ~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~--~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p 287 (373)
..+++.....+.+-..|+.+-+-... .+.+. .....+..+|.|+..||.++. +..|++++ .+. +..+.
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~---~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~--~k~----lysl~ 231 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTT---FIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNE--GKN----LYSLE 231 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhc---cccccccEEEEEECCCCCEEecCCCCce-EEEEEccC--Cce----eEecc
Confidence 45555445566777888877655433 22222 222334459999999876544 68999987 222 33333
Q ss_pred hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
...- -..++..-+...+.-.....|-++|.+ ++
T Consensus 232 a~~~-----------v~sl~fspnrywL~~at~~sIkIwdl~--~~ 264 (315)
T KOG0279|consen 232 AFDI-----------VNSLCFSPNRYWLCAATATSIKIWDLE--SK 264 (315)
T ss_pred CCCe-----------EeeEEecCCceeEeeccCCceEEEecc--ch
Confidence 2211 244445555555555555568888888 76
No 128
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.11 E-value=13 Score=34.75 Aligned_cols=144 Identities=8% Similarity=0.071 Sum_probs=72.6
Q ss_pred ceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-EEEEEE-cCCceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684 170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWIT-SARAYSVIGFDIESNTWRELSAPMADRLEFAT 247 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~g-g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~ 247 (373)
..++++|..+++=+.+...+. ........-+| ++++.. ......|+.+|..++..+.+ ..........
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g--------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l-t~~~~~~~~~- 289 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG--------SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL-TQSSGIDTEP- 289 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC--------CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC-CCCCCCCcCe-
Confidence 568999998776444443321 01111122244 454432 22346788899887776666 2221111111
Q ss_pred EEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC--ccEEE
Q 046684 248 LVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--LGMII 325 (373)
Q Consensus 248 ~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~ 325 (373)
...-+|+..++.........+|.++. ++...+.+..-. .. .....+...|..|++..... ..+.+
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~--~~g~~~~lt~~g-~~----------~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPA--SGGAAQRVTFTG-SY----------NTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEEC--CCCceEEEecCC-CC----------cCceEECCCCCEEEEEEccCCcEEEEE
Confidence 22335553333333333357888875 445555543111 00 00234444566776655332 36899
Q ss_pred EEccccCCcccEEEe
Q 046684 326 WREDEDKRKWEWVWV 340 (373)
Q Consensus 326 yd~~~~~~~~~W~~~ 340 (373)
+|++ ++ +.+.+
T Consensus 357 ~d~~--~g--~~~~l 367 (427)
T PRK02889 357 QDLA--TG--QVTAL 367 (427)
T ss_pred EECC--CC--CeEEc
Confidence 9998 77 65544
No 129
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=91.06 E-value=13 Score=34.50 Aligned_cols=155 Identities=8% Similarity=0.030 Sum_probs=76.6
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE 169 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~ 169 (373)
-..+++.||++...++...++.-|..-+..++-.....-... ..++. +|-.++..-
T Consensus 231 PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R-------~~nsD------GkrIvFq~~----------- 286 (668)
T COG4946 231 PMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPR-------NANSD------GKRIVFQNA----------- 286 (668)
T ss_pred ceEEcceEEEEecccCccceEEeccCCchhhhcCCchhcccc-------ccCCC------CcEEEEecC-----------
Confidence 445677788877666667777777776655443322211110 11111 443333211
Q ss_pred ceEEEEECCCCceeeecCC-Cccccccceec-----cCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCC
Q 046684 170 SMVEMYDSRHDAWQIIGSM-PVEFAVRLTVW-----TPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL 243 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~-p~~~~~~~~~~-----~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~ 243 (373)
.+++.||+++++-+++.-- |.....-.... +-.--+..+|.++.+. .......+++-.+---++ +-+...
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V--SRGkaFi~~~~~~~~iqv--~~~~~V 362 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV--SRGKAFIMRPWDGYSIQV--GKKGGV 362 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE--ecCcEEEECCCCCeeEEc--CCCCce
Confidence 2589999999887766432 32100000000 0011245677777664 234455555443322222 222221
Q ss_pred CceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684 244 EFATLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 244 ~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
. ..-...+++-.++|..++..+.||+.+.
T Consensus 363 r-Y~r~~~~~e~~vigt~dgD~l~iyd~~~ 391 (668)
T COG4946 363 R-YRRIQVDPEGDVIGTNDGDKLGIYDKDG 391 (668)
T ss_pred E-EEEEccCCcceEEeccCCceEEEEecCC
Confidence 2 2223334556677777777789999865
No 130
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.90 E-value=14 Score=34.44 Aligned_cols=144 Identities=14% Similarity=0.108 Sum_probs=78.4
Q ss_pred cceEEEEECCCC-----ceeeecCCCccccccceeccCCceEEECCEEEEEEc--CCceEEEEEECCCCc---EEecccC
Q 046684 169 ESMVEMYDSRHD-----AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS--ARAYSVIGFDIESNT---WRELSAP 238 (373)
Q Consensus 169 ~~~~~~yd~~~~-----~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg--~~~~~i~~yd~~~~~---w~~~~~~ 238 (373)
...+++.+...+ .|+.+..-- .. ....+...++.+|+... .....|+++++.+.. |..+-.+
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~-------~~-~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPRE-------DG-VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESS-------SS--EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCC-------Cc-eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence 478899999875 688775421 00 11123345889999873 335789999998765 6643033
Q ss_pred CCCCCCceeEEEECCEEEEEEeecCCc-eEEEEeecCCCCCCeEEEEe-echhhhhhhcCCCCCCCceEEE--ecCCEEE
Q 046684 239 MADRLEFATLVSRNQKLTLIGGTCGGD-ACVWELSEGGDDDIWCLIEK-VPIEMGMRLSGGKASWGGTRCA--AGNGAIC 314 (373)
Q Consensus 239 ~p~~~~~~~~~~~~g~l~~~gg~~~~~-~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~~~~~~~~~~~~--~~~~~i~ 314 (373)
......-..+...++.|++..-.+... +.++++. ..|..... +|.... ..... ..++.++
T Consensus 323 ~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-----~~~~~~~~~~p~~g~-----------v~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 323 EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-----DGKESREIPLPEAGS-----------VSGVSGDFDSDELR 386 (414)
T ss_dssp -SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT------TEEEEEEESSSSSE-----------EEEEES-TT-SEEE
T ss_pred CCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-----CCcEEeeecCCcceE-----------EeccCCCCCCCEEE
Confidence 323223345566788888876554443 5555553 14554433 332210 01111 1245666
Q ss_pred EEE-cC--CccEEEEEccccCCcccEEEe
Q 046684 315 LYR-EV--GLGMIIWREDEDKRKWEWVWV 340 (373)
Q Consensus 315 ~~~-~~--~~~~~~yd~~~~~~~~~W~~~ 340 (373)
+.- +. ...++.||++ ++ +.+.+
T Consensus 387 ~~~ss~~~P~~~y~~d~~--t~--~~~~~ 411 (414)
T PF02897_consen 387 FSYSSFTTPPTVYRYDLA--TG--ELTLL 411 (414)
T ss_dssp EEEEETTEEEEEEEEETT--TT--CEEEE
T ss_pred EEEeCCCCCCEEEEEECC--CC--CEEEE
Confidence 543 22 2469999999 98 66544
No 131
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.68 E-value=4.4 Score=39.08 Aligned_cols=119 Identities=12% Similarity=0.124 Sum_probs=65.4
Q ss_pred ceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCCCC--------CCceeEEEECCEEEEEEeecCCceEEEEee
Q 046684 203 ESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMADR--------LEFATLVSRNQKLTLIGGTCGGDACVWELS 272 (373)
Q Consensus 203 ~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~--------~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~ 272 (373)
+.++.+|.+|+.. ....+.++|.+++ .|+.- ...+.. ....+++..++++|+.... . .++-++
T Consensus 64 tPvv~~g~vyv~s--~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--g--~l~ALD 136 (527)
T TIGR03075 64 QPLVVDGVMYVTT--SYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--A--RLVALD 136 (527)
T ss_pred CCEEECCEEEEEC--CCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEECCEEEEEcCC--C--EEEEEE
Confidence 3477899999974 3457999999875 58754 222111 1122345667888775422 2 344444
Q ss_pred cCCCCCCeEEEEe-echhhhhhhcCCCCCCCceEEEecCCEEEEEEc-----CCccEEEEEccccCCcccEEEe
Q 046684 273 EGGDDDIWCLIEK-VPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE-----VGLGMIIWREDEDKRKWEWVWV 340 (373)
Q Consensus 273 ~~~~~~~W~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~yd~~~~~~~~~W~~~ 340 (373)
....+..|+.-.. ....... ...-+..++.||+-.. ..+.+..||.+ +++..|+.-
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~----------tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~--TG~~lW~~~ 198 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTI----------TAAPLVVKGKVITGISGGEFGVRGYVTAYDAK--TGKLVWRRY 198 (527)
T ss_pred CCCCCEEeecccccccccccc----------cCCcEEECCEEEEeecccccCCCcEEEEEECC--CCceeEecc
Confidence 3113445764321 1100000 1222334777777532 23579999999 998788854
No 132
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.63 E-value=0.14 Score=46.24 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=36.0
Q ss_pred cchHHHHHHHHhcCChhhHHHhhcccccchhccccccchh
Q 046684 4 NLHLDVLANIFSFLSPDSLARAKSVCSHWHTCAKLYHLHS 43 (373)
Q Consensus 4 ~Lp~dll~~Il~rLP~~~l~r~r~Vck~W~~li~~~~f~~ 43 (373)
.||.||+.+||+.|..++++|++.+|+.|+.+..|-.-++
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q 113 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQ 113 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccce
Confidence 5899999999999999999999999999999997765443
No 133
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.52 E-value=19 Score=35.48 Aligned_cols=159 Identities=10% Similarity=0.106 Sum_probs=86.1
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEE-EEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVG-IVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY 168 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~ 168 (373)
.-+.+|.+.+.|+. ..++.+||...+-.... ........+.. +... +++++....+
T Consensus 357 ~YSpDgq~iaTG~e--DgKVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~----------g~~llssSLD--------- 413 (893)
T KOG0291|consen 357 AYSPDGQLIATGAE--DGKVKVWNTQSGFCFVT--FTEHTSGVTAVQFTAR----------GNVLLSSSLD--------- 413 (893)
T ss_pred EECCCCcEEEeccC--CCcEEEEeccCceEEEE--eccCCCceEEEEEEec----------CCEEEEeecC---------
Confidence 44668888887775 56789999887654321 11111111111 1111 3444433333
Q ss_pred cceEEEEECCCC-ceeeecCCCccccccceeccCCceEEEC--CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc
Q 046684 169 ESMVEMYDSRHD-AWQIIGSMPVEFAVRLTVWTPNESVCTR--GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF 245 (373)
Q Consensus 169 ~~~~~~yd~~~~-~W~~~~~~p~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~ 245 (373)
..|-.+|.... ..|.... | .+...+.+.++ |.+.+.|....-.|...+.++++--.+ ..-...-..
T Consensus 414 -GtVRAwDlkRYrNfRTft~-P--------~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi-LsGHEgPVs 482 (893)
T KOG0291|consen 414 -GTVRAWDLKRYRNFRTFTS-P--------EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI-LSGHEGPVS 482 (893)
T ss_pred -CeEEeeeecccceeeeecC-C--------CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh-hcCCCCcce
Confidence 24566666432 2343322 1 11233445566 999999888888999999999987665 222111111
Q ss_pred eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684 246 ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI 288 (373)
Q Consensus 246 ~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~ 288 (373)
.-.....|.+.+.+. -+..+.+|+.- .+|.++.+++.
T Consensus 483 ~l~f~~~~~~LaS~S-WDkTVRiW~if-----~s~~~vEtl~i 519 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGS-WDKTVRIWDIF-----SSSGTVETLEI 519 (893)
T ss_pred eeEEccccCeEEecc-ccceEEEEEee-----ccCceeeeEee
Confidence 112333455444443 34447999986 56777766553
No 134
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=90.48 E-value=7.9 Score=35.30 Aligned_cols=122 Identities=12% Similarity=0.170 Sum_probs=70.8
Q ss_pred ceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCe
Q 046684 203 ESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIW 280 (373)
Q Consensus 203 ~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W 280 (373)
+++++ +|.|+.. |.....+-.||+.+.. .+ ..+|.+..-..... .++.-|++.+.++..+.+|++.. .+
T Consensus 352 s~~fHpDgLifgt-gt~d~~vkiwdlks~~--~~-a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK----l~- 422 (506)
T KOG0289|consen 352 SAAFHPDGLIFGT-GTPDGVVKIWDLKSQT--NV-AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK----LK- 422 (506)
T ss_pred EeeEcCCceEEec-cCCCceEEEEEcCCcc--cc-ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh----hc-
Confidence 33444 5677666 5667788899999877 34 45555433333232 34444666556666689999964 22
Q ss_pred EEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccC
Q 046684 281 CLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLT 346 (373)
Q Consensus 281 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~ 346 (373)
.+..++.+.... .....+..-|..+.++|.+-.|+.|+.. ++ .|+.+...+.-
T Consensus 423 -n~kt~~l~~~~~--------v~s~~fD~SGt~L~~~g~~l~Vy~~~k~--~k--~W~~~~~~~~~ 475 (506)
T KOG0289|consen 423 -NFKTIQLDEKKE--------VNSLSFDQSGTYLGIAGSDLQVYICKKK--TK--SWTEIKELADH 475 (506)
T ss_pred -ccceeecccccc--------ceeEEEcCCCCeEEeecceeEEEEEecc--cc--cceeeehhhhc
Confidence 333333322110 0133334445566666666667788888 89 99998765533
No 135
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.35 E-value=17 Score=34.73 Aligned_cols=172 Identities=10% Similarity=0.139 Sum_probs=83.6
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEEC-CEEEEEEcCCceEEEEEE
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTR-GMLYWITSARAYSVIGFD 226 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~-g~ly~~gg~~~~~i~~yd 226 (373)
++||+.... ..++.+|.++++ |+.-...+.... .........++.+ +++|+. .....+.++|
T Consensus 62 g~vy~~~~~-----------g~l~AlD~~tG~~~W~~~~~~~~~~~--~~~~~~~g~~~~~~~~V~v~--~~~g~v~AlD 126 (488)
T cd00216 62 GDMYFTTSH-----------SALFALDAATGKVLWRYDPKLPADRG--CCDVVNRGVAYWDPRKVFFG--TFDGRLVALD 126 (488)
T ss_pred CEEEEeCCC-----------CcEEEEECCCChhhceeCCCCCcccc--ccccccCCcEEccCCeEEEe--cCCCeEEEEE
Confidence 788875422 357888988765 876433210000 0111122335556 888876 3467899999
Q ss_pred CCCC--cEEecccCCCC---CCCceeEEEECCEEEEEEeecC-----CceEEEEeecCCCCCCeEEEEeechhhhh-hhc
Q 046684 227 IESN--TWRELSAPMAD---RLEFATLVSRNQKLTLIGGTCG-----GDACVWELSEGGDDDIWCLIEKVPIEMGM-RLS 295 (373)
Q Consensus 227 ~~~~--~w~~~~~~~p~---~~~~~~~~~~~g~l~~~gg~~~-----~~~~i~~~~~~~~~~~W~~v~~~p~~~~~-~~~ 295 (373)
.+++ .|+.- ...+. .......+..++.+|+...... ..-.++.++....+..|+.-...+..... ...
T Consensus 127 ~~TG~~~W~~~-~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 127 AETGKQVWKFG-NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred CCCCCEeeeec-CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCC
Confidence 9876 47754 22211 0112233445666665322111 11234444441144568654322211100 000
Q ss_pred --------CCCCCCCceEEEecCCEEEEEEcC-----------------CccEEEEEccccCCcccEEE
Q 046684 296 --------GGKASWGGTRCAAGNGAICLYREV-----------------GLGMIIWREDEDKRKWEWVW 339 (373)
Q Consensus 296 --------~~~~~~~~~~~~~~~~~i~~~~~~-----------------~~~~~~yd~~~~~~~~~W~~ 339 (373)
.+-.......+...++.||+-.+. .+.++.+|.+ +++..|+.
T Consensus 206 ~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~--tG~~~W~~ 272 (488)
T cd00216 206 PDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD--TGKVKWFY 272 (488)
T ss_pred CCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC--CCCEEEEe
Confidence 000001112222246777775422 1369999999 99878885
No 136
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.34 E-value=13 Score=33.27 Aligned_cols=66 Identities=9% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCEEEEEEeecCC--c----eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC--EEEEEEcCCccE
Q 046684 252 NQKLTLIGGTCGG--D----ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG--AICLYREVGLGM 323 (373)
Q Consensus 252 ~g~l~~~gg~~~~--~----~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~ 323 (373)
.++||++...... + -+||.++. .+=+.+.+++.+.-. ....+..++ .||.....+..+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~----~t~krv~Ri~l~~~~----------~Si~Vsqd~~P~L~~~~~~~~~l 314 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDL----KTHKRVARIPLEHPI----------DSIAVSQDDKPLLYALSAGDGTL 314 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEET----TTTEEEEEEEEEEEE----------SEEEEESSSS-EEEEEETTTTEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEEC----CCCeEEEEEeCCCcc----------ceEEEccCCCcEEEEEcCCCCeE
Confidence 6799988643221 1 78999987 544677776654211 123333343 566566666789
Q ss_pred EEEEccccCC
Q 046684 324 IIWREDEDKR 333 (373)
Q Consensus 324 ~~yd~~~~~~ 333 (373)
.+||.. ++
T Consensus 315 ~v~D~~--tG 322 (342)
T PF06433_consen 315 DVYDAA--TG 322 (342)
T ss_dssp EEEETT--T-
T ss_pred EEEeCc--CC
Confidence 999999 88
No 137
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.28 E-value=13 Score=33.88 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=91.5
Q ss_pred ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCC---Cce
Q 046684 106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRH---DAW 182 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~---~~W 182 (373)
...+..||..|+.-+.+-+....-...+++-+-+ +.=++.|+.+ ..+..+|... +.|
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD----------g~~~V~Gs~d----------r~i~~wdlDgn~~~~W 349 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD----------GFRFVTGSPD----------RTIIMWDLDGNILGNW 349 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccC----------CceeEecCCC----------CcEEEecCCcchhhcc
Confidence 3457888999888766433222222222222222 4446666543 4566777655 468
Q ss_pred eeecCCCccccccceeccCCceEEECCE-EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEee
Q 046684 183 QIIGSMPVEFAVRLTVWTPNESVCTRGM-LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGT 261 (373)
Q Consensus 183 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~ 261 (373)
+-+... ....-++..+|+ ++.++ ....+..|+.++..=+.+ .....+... ....-+|++.++.-.
T Consensus 350 ~gvr~~----------~v~dlait~Dgk~vl~v~--~d~~i~l~~~e~~~dr~l-ise~~~its-~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 350 EGVRDP----------KVHDLAITYDGKYVLLVT--VDKKIRLYNREARVDRGL-ISEEQPITS-FSISKDGKLALVNLQ 415 (519)
T ss_pred cccccc----------eeEEEEEcCCCcEEEEEe--cccceeeechhhhhhhcc-ccccCceeE-EEEcCCCcEEEEEcc
Confidence 766542 011111334554 55553 456677888776544422 122222211 123347888887754
Q ss_pred cCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCC-EEEEEEcCCccEEEEEccccCC
Q 046684 262 CGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNG-AICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 262 ~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
+ ..+..|++++ |..+..--.-.-.. +-.-.|++.++ ...+.|..+.++++++.. ++
T Consensus 416 ~-qei~LWDl~e------~~lv~kY~Ghkq~~-------fiIrSCFgg~~~~fiaSGSED~kvyIWhr~--sg 472 (519)
T KOG0293|consen 416 D-QEIHLWDLEE------NKLVRKYFGHKQGH-------FIIRSCFGGGNDKFIASGSEDSKVYIWHRI--SG 472 (519)
T ss_pred c-CeeEEeecch------hhHHHHhhcccccc-------eEEEeccCCCCcceEEecCCCceEEEEEcc--CC
Confidence 4 3478999965 44443211100000 11234555544 555555666789999988 77
No 138
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=90.15 E-value=8.5 Score=32.38 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=56.3
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEE-EEee
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCL-IEKV 286 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~-v~~~ 286 (373)
.|.+.+.|| ...++..|+++++.+.. .. ....+-+.++.-+..=-++.|.++..+.+|+.++ .+=.+ +..-
T Consensus 126 enSi~~AgG--D~~~y~~dlE~G~i~r~-~r-GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt----~k~v~~ie~y 197 (325)
T KOG0649|consen 126 ENSILFAGG--DGVIYQVDLEDGRIQRE-YR-GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT----QKHVSMIEPY 197 (325)
T ss_pred CCcEEEecC--CeEEEEEEecCCEEEEE-Ec-CCcceeeeeeecccCcceeecCCCccEEEEeccc----cceeEEeccc
Confidence 478888864 47899999999998876 21 1222223333212222233344444579999976 43332 2222
Q ss_pred chhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 287 PIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
..+... .++. .....+...+.=+++.|...++-.+++. +.
T Consensus 198 k~~~~l--Rp~~---g~wigala~~edWlvCGgGp~lslwhLr--ss 237 (325)
T KOG0649|consen 198 KNPNLL--RPDW---GKWIGALAVNEDWLVCGGGPKLSLWHLR--SS 237 (325)
T ss_pred cChhhc--Cccc---CceeEEEeccCceEEecCCCceeEEecc--CC
Confidence 222211 1111 1222233333333333444578889998 66
No 139
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.15 E-value=6.5 Score=39.64 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=24.2
Q ss_pred CceEEECCEEEEEEcCCceEEEEEECCCC--cEEec
Q 046684 202 NESVCTRGMLYWITSARAYSVIGFDIESN--TWREL 235 (373)
Q Consensus 202 ~~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~ 235 (373)
.+.++++|.+|+.. ..+.++++|.+++ .|+.-
T Consensus 188 ~TPlvvgg~lYv~t--~~~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCT--PHNKVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEEC--CCCeEEEEECCCCcEEEEEc
Confidence 34578899999984 3468999999865 58754
No 140
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.04 E-value=16 Score=33.92 Aligned_cols=70 Identities=14% Similarity=0.039 Sum_probs=39.9
Q ss_pred ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684 207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI 283 (373)
Q Consensus 207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v 283 (373)
.++.-.++|......+.+||..+.+-..+.. +.......-+.-+|+-.+++... .++|..+- +++.=+.+
T Consensus 369 ~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr---~el~vidi--dngnv~~i 438 (668)
T COG4946 369 VDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDR---FELWVIDI--DNGNVRLI 438 (668)
T ss_pred cCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCc---eEEEEEEe--cCCCeeEe
Confidence 4455666765666789999999998887732 33333333333456655544222 45666655 44443333
No 141
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.01 E-value=3.1 Score=36.26 Aligned_cols=101 Identities=10% Similarity=0.217 Sum_probs=59.8
Q ss_pred ceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeec-----CCceEEEEeecCCCCCCeEEEEe-----ec
Q 046684 219 AYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTC-----GGDACVWELSEGGDDDIWCLIEK-----VP 287 (373)
Q Consensus 219 ~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~-----~~~~~i~~~~~~~~~~~W~~v~~-----~p 287 (373)
-..+-.||+++.+|..+... ....-..+.-. +++|++.|... ...+..|+++. .+|+.+.. +|
T Consensus 15 C~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~----~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN----QTWSSLGGGSSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC----CeeeecCCcccccCC
Confidence 45788999999999988322 11112233333 67788777532 12277888866 89988766 23
Q ss_pred hhhhhhhcCCCCCCCceEEE-ecCCEEEEEEc---CCccEEEEEccccCCcccEEEecc
Q 046684 288 IEMGMRLSGGKASWGGTRCA-AGNGAICLYRE---VGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~---~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
.+.. ..... ..++.+++.|. ...-+..||=. +|+.+..
T Consensus 89 gpv~-----------a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs------~W~~i~~ 130 (281)
T PF12768_consen 89 GPVT-----------ALTFISNDGSNFWVAGRSANGSTFLMKYDGS------SWSSIGS 130 (281)
T ss_pred CcEE-----------EEEeeccCCceEEEeceecCCCceEEEEcCC------ceEeccc
Confidence 3221 11111 23557777664 22346666544 9998876
No 142
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.79 E-value=12 Score=32.10 Aligned_cols=158 Identities=14% Similarity=0.155 Sum_probs=87.1
Q ss_pred CceeEEeeCcEEEEeeCCCCceEEEEEcCccccee---ccCCCCCC-------CCCCeEEEEEcCCCCCCCCCceEEEEE
Q 046684 86 PVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFR---YLPLLNVS-------RTNPAVGIVMEGPAQHGPFPNFRIYVA 155 (373)
Q Consensus 86 ~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~---~lp~~~~~-------~~~~~~~~~~~~~~~~~~~~~~kl~~~ 155 (373)
.+.+.++.||-+|..-. ....+..||..+++-. .||..... .....+-+..|. .-|++|
T Consensus 70 ~GtG~vVYngslYY~~~--~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE---------~GLWvI 138 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKY--NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE---------NGLWVI 138 (250)
T ss_pred ccCCeEEECCcEEEEec--CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC---------CCEEEE
Confidence 34445667887777544 2688999999998765 35433211 000111111111 457777
Q ss_pred eccCCCCCCCCcccceEEEEECCC----CceeeecCCCccccccceeccCCceEEECCEEEEEEcCC---ceEEEEEECC
Q 046684 156 GGMSDEPRGGATYESMVEMYDSRH----DAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR---AYSVIGFDIE 228 (373)
Q Consensus 156 gg~~~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~---~~~i~~yd~~ 228 (373)
-... +......+-..|+.+ .+|..--. .+....+.++-|.||++.... ..-..+||+.
T Consensus 139 Yat~-----~~~g~ivvskld~~tL~v~~tw~T~~~----------k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~ 203 (250)
T PF02191_consen 139 YATE-----DNNGNIVVSKLDPETLSVEQTWNTSYP----------KRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTY 203 (250)
T ss_pred EecC-----CCCCcEEEEeeCcccCceEEEEEeccC----------chhhcceeeEeeEEEEEEECCCCCcEEEEEEECC
Confidence 5443 222223344445443 45764221 122233466789999997432 4567899999
Q ss_pred CCcEEecccCCCCCCCceeEEEE---CCEEEEEEeecCCceEEEEee
Q 046684 229 SNTWRELSAPMADRLEFATLVSR---NQKLTLIGGTCGGDACVWELS 272 (373)
Q Consensus 229 ~~~w~~~~~~~p~~~~~~~~~~~---~g~l~~~gg~~~~~~~i~~~~ 272 (373)
+++=..+..+++........+.. +.+||+.. +..+..|++.
T Consensus 204 t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd---~G~~v~Y~v~ 247 (250)
T PF02191_consen 204 TGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD---NGYQVTYDVR 247 (250)
T ss_pred CCceeceeeeeccccCceEeeeECCCCCeEEEEE---CCeEEEEEEE
Confidence 98877665555555444444443 56788764 2234566554
No 143
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=14 Score=34.90 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=80.1
Q ss_pred eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684 92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM 171 (373)
Q Consensus 92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~ 171 (373)
+..+.+-+..| ..+++||-.+++-..+-... ....+...... ++..+++|-.+ ..
T Consensus 186 ss~n~laValg----~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~---------~G~~LavG~~~----------g~ 240 (484)
T KOG0305|consen 186 SSANVLAVALG----QSVYLWSASSGSVTELCSFG--EELVTSVKWSP---------DGSHLAVGTSD----------GT 240 (484)
T ss_pred ccCCeEEEEec----ceEEEEecCCCceEEeEecC--CCceEEEEECC---------CCCEEEEeecC----------Ce
Confidence 34555555554 67999999999876665554 33333333321 16778887554 46
Q ss_pred EEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684 172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR 251 (373)
Q Consensus 172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~ 251 (373)
+++||.++.+ .+..+. ........+...++.+... |.....|..+|....+=..- .-......-+++.-.
T Consensus 241 v~iwD~~~~k--~~~~~~------~~h~~rvg~laW~~~~lss-Gsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 241 VQIWDVKEQK--KTRTLR------GSHASRVGSLAWNSSVLSS-GSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWS 310 (484)
T ss_pred EEEEehhhcc--cccccc------CCcCceeEEEeccCceEEE-ecCCCcEEEEEEecchhhhh-hhhcccceeeeeEEC
Confidence 8999986644 122221 0011112233455666666 45567788888765432111 111122334455555
Q ss_pred CCEEEEEEeecCCceEEEEeec
Q 046684 252 NQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 252 ~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
.+.-+++.|..++.+.||+...
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLS 332 (484)
T ss_pred CCCCeeccCCCccceEeccCCC
Confidence 5555666665556678998743
No 144
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=89.42 E-value=20 Score=34.14 Aligned_cols=100 Identities=14% Similarity=0.016 Sum_probs=61.0
Q ss_pred CeeEEEEeCCCCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceec-------cCCCCCCCCCCe
Q 046684 62 GLCCYVHNPVSDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRY-------LPLLNVSRTNPA 133 (373)
Q Consensus 62 ~~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~-------lp~~~~~~~~~~ 133 (373)
+.+++.+|...++|... ......-....+..++|+|.+++. ...+..|||.+++-.. ++..|..-..++
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~---~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~s 230 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE---DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPS 230 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEeccc---CceEEEecchhhhhheeeecccccCCCccccccCc
Confidence 36888999999988654 233234455668888999988775 5789999999987432 223333333333
Q ss_pred EEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc
Q 046684 134 VGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA 181 (373)
Q Consensus 134 ~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~ 181 (373)
+..+.... ++-=+.+|-. ...+++||.++.+
T Consensus 231 vTal~F~d-------~gL~~aVGts----------~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 231 VTALKFRD-------DGLHVAVGTS----------TGSVLIYDLRASK 261 (703)
T ss_pred ceEEEecC-------CceeEEeecc----------CCcEEEEEcccCC
Confidence 44433211 0222333422 3468999998765
No 145
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=89.11 E-value=14 Score=31.93 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=29.3
Q ss_pred eEEEEEECCCCcEEecccC-CCCCCCceeEEEECCEEEEEEeecCCc----eEEEEee
Q 046684 220 YSVIGFDIESNTWRELSAP-MADRLEFATLVSRNQKLTLIGGTCGGD----ACVWELS 272 (373)
Q Consensus 220 ~~i~~yd~~~~~w~~~~~~-~p~~~~~~~~~~~~g~l~~~gg~~~~~----~~i~~~~ 272 (373)
..|+-+|++-+..+....| +......+...+-++.+|++||..-.. -.+|.++
T Consensus 131 P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlk 188 (337)
T PF03089_consen 131 PQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLK 188 (337)
T ss_pred CeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEE
Confidence 4555666666555443111 122334445566689999999964322 3455554
No 146
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.06 E-value=20 Score=33.56 Aligned_cols=188 Identities=10% Similarity=0.074 Sum_probs=100.4
Q ss_pred EEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEE
Q 046684 97 LLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176 (373)
Q Consensus 97 l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd 176 (373)
+++..-.....+++++|..|++-+.+...+.... ... . .+.+ .++++..... ...+++++|
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~--~~~-~-SPDG-------~~la~~~~~~--------g~~~Iy~~d 263 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV--VSD-V-SKDG-------SKLLLTMAPK--------GQPDIYLYD 263 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE--eeE-E-CCCC-------CEEEEEEccC--------CCcEEEEEE
Confidence 5543332235689999999998777754322111 111 1 1111 4555543222 146899999
Q ss_pred CCCCceeeecCCCccccccceeccCCceEEECC-EEEEEEcC-CceEEEEEECCCCcEEecccCCCCCCCceeEEEECCE
Q 046684 177 SRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSA-RAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQK 254 (373)
Q Consensus 177 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~-~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~ 254 (373)
..++.++.+...+. ........-+| .||+.... ....|+.+|+.+++.+.+ ..... ... ...-+|+
T Consensus 264 l~~g~~~~LT~~~~--------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-t~~g~--~~~-~~SPDG~ 331 (419)
T PRK04043 264 TNTKTLTQITNYPG--------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-VFHGK--NNS-SVSTYKN 331 (419)
T ss_pred CCCCcEEEcccCCC--------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC-ccCCC--cCc-eECCCCC
Confidence 99999988865531 01111122344 57776422 235799999999988776 22211 112 2333555
Q ss_pred -EEEEEeecC-----CceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc--CCccEEEE
Q 046684 255 -LTLIGGTCG-----GDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE--VGLGMIIW 326 (373)
Q Consensus 255 -l~~~gg~~~-----~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~y 326 (373)
|.++..... ...++|.++. ++..++.+..-.. . ........|..|++... ....+..+
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~--~~g~~~~LT~~~~---~---------~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLIST--NSDYIRRLTANGV---N---------QFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEEC--CCCCeEECCCCCC---c---------CCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 444432221 1146776665 5566666654211 1 02445555666766653 33458888
Q ss_pred Ecc
Q 046684 327 RED 329 (373)
Q Consensus 327 d~~ 329 (373)
+++
T Consensus 398 ~l~ 400 (419)
T PRK04043 398 RLN 400 (419)
T ss_pred ecC
Confidence 888
No 147
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.02 E-value=34 Score=36.28 Aligned_cols=212 Identities=11% Similarity=0.009 Sum_probs=105.1
Q ss_pred eCcEEEEeeCCCCceEEEEEcCcccceeccCCCC-------C-------CCCCCeEEEEEcCCCCCCCCCceEEEEEecc
Q 046684 93 IGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLN-------V-------SRTNPAVGIVMEGPAQHGPFPNFRIYVAGGM 158 (373)
Q Consensus 93 ~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~ 158 (373)
-++.||+.... .+.+.++|+.++.-+.+..-. . ....+.-..+. + . ++.+|+....
T Consensus 634 ~gn~LYVaDt~--n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p--~-----~g~LyVad~~ 703 (1057)
T PLN02919 634 KKNLLYVADTE--NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-P--V-----NEKVYIAMAG 703 (1057)
T ss_pred CCCEEEEEeCC--CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-c--C-----CCeEEEEECC
Confidence 46788987753 467888999887765543210 0 00111112222 1 0 1678876432
Q ss_pred CCCCCCCCcccceEEEEECCCCceeeecCCCcc------ccccceeccCCceEEE-CC-EEEEEEcCCceEEEEEECCCC
Q 046684 159 SDEPRGGATYESMVEMYDSRHDAWQIIGSMPVE------FAVRLTVWTPNESVCT-RG-MLYWITSARAYSVIGFDIESN 230 (373)
Q Consensus 159 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~------~~~~~~~~~~~~~~~~-~g-~ly~~gg~~~~~i~~yd~~~~ 230 (373)
+ ..+++||..++..+....-... ............+++. +| .||+.. ...+.|.+||++++
T Consensus 704 ~----------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD-s~n~~Irv~D~~tg 772 (1057)
T PLN02919 704 Q----------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD-SESSSIRALDLKTG 772 (1057)
T ss_pred C----------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE-CCCCeEEEEECCCC
Confidence 2 4578888876655433211000 0000001111223332 34 588884 45678999999876
Q ss_pred cEEecccCC---CCC---------------CCc-eeEE-EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684 231 TWRELSAPM---ADR---------------LEF-ATLV-SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEM 290 (373)
Q Consensus 231 ~w~~~~~~~---p~~---------------~~~-~~~~-~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~ 290 (373)
....+..-. +.. ... .+++ .-+|.||+.... +..+.+|+++. .....+.......
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-N~rIrviD~~t----g~v~tiaG~G~~G 847 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-NHKIKKLDPAT----KRVTTLAGTGKAG 847 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-CCEEEEEECCC----CeEEEEeccCCcC
Confidence 543221000 000 001 1222 346788888643 33477887754 5444443221110
Q ss_pred hhh--hcCCCCCCCceEEEe-cCCEEEEEEcCCccEEEEEccccCC
Q 046684 291 GMR--LSGGKASWGGTRCAA-GNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 291 ~~~--~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
+.. .... ....+..++. .++.||+.+...+.|.++|++ ++
T Consensus 848 ~~dG~~~~a-~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~--~~ 890 (1057)
T PLN02919 848 FKDGKALKA-QLSEPAGLALGENGRLFVADTNNSLIRYLDLN--KG 890 (1057)
T ss_pred CCCCccccc-ccCCceEEEEeCCCCEEEEECCCCEEEEEECC--CC
Confidence 000 0000 0112344333 467899999888899999999 77
No 148
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=88.58 E-value=8.8 Score=28.96 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=52.3
Q ss_pred eeCcEEEEeeCC--CCceEEEEEcCcccceeccCCC---CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684 92 SIGSFLLLRPIN--STILQLVLCNPFTRQFRYLPLL---NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA 166 (373)
Q Consensus 92 ~~~g~l~~~gg~--~~~~~~~v~np~t~~w~~lp~~---~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~ 166 (373)
..||.+|-+... .....+..||..+.+|+.++.+ ........+.-+. ++|-++..... ..
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~-----------G~L~~v~~~~~----~~ 67 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYK-----------GKLALVSYNDQ----GE 67 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeC-----------CeEEEEEecCC----CC
Confidence 468888887664 3456789999999999887543 2333444555555 88888764430 11
Q ss_pred cccceEEEE-ECCCCceeeecC
Q 046684 167 TYESMVEMY-DSRHDAWQIIGS 187 (373)
Q Consensus 167 ~~~~~~~~y-d~~~~~W~~~~~ 187 (373)
....++++. |..+++|.+...
T Consensus 68 ~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 68 PDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred cceEEEEEeeccccceEEEEEE
Confidence 234577776 456778986643
No 149
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.30 E-value=18 Score=32.19 Aligned_cols=157 Identities=12% Similarity=0.170 Sum_probs=87.9
Q ss_pred cceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EEEEEEc-CCceEEEEEECCCCcEEecccC--CCCCC
Q 046684 169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITS-ARAYSVIGFDIESNTWRELSAP--MADRL 243 (373)
Q Consensus 169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg-~~~~~i~~yd~~~~~w~~~~~~--~p~~~ 243 (373)
...+.+|+...+.=+....... ....+...+++. |+ ..|++.- ...-.++.||...++.+.++.. +|...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v-----~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEV-----KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred CceEEEEEcccCcccccccccc-----CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 3478889888766554433211 122223334554 34 4777741 2234566777777888776322 23322
Q ss_pred ----CceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc
Q 046684 244 ----EFATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE 318 (373)
Q Consensus 244 ----~~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 318 (373)
....+ ...+|+...+.-+....+.+|..++ .+.+-+.+...+...- ..+.+.+.-.++.|++.+.
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~--~~g~L~~~~~~~teg~--------~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP--DGGKLELVGITPTEGQ--------FPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC--CCCEEEEEEEeccCCc--------CCccceeCCCCCEEEEEcc
Confidence 11111 2235654444434444578888887 6666666655443321 1125777777888999888
Q ss_pred CCccEEEEEccccCCcccEEEecc
Q 046684 319 VGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 319 ~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
.++.+.+|..+-+++ +-+.+..
T Consensus 311 ~sd~i~vf~~d~~TG--~L~~~~~ 332 (346)
T COG2706 311 KSDNITVFERDKETG--RLTLLGR 332 (346)
T ss_pred CCCcEEEEEEcCCCc--eEEeccc
Confidence 888888886664477 5555443
No 150
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=88.19 E-value=15 Score=32.70 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=65.0
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEEC--CCCceeeecCCCccccc---cceeccCCceEEECCEEEEEE-----cCC-
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDS--RHDAWQIIGSMPVEFAV---RLTVWTPNESVCTRGMLYWIT-----SAR- 218 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~~~~---~~~~~~~~~~~~~~g~ly~~g-----g~~- 218 (373)
++||++-|..... .......+..+-. ...+|.....++..... ....-.+..++.-||.|.+-- ...
T Consensus 70 n~IymLvG~y~~~--~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~ 147 (310)
T PF13859_consen 70 NKIYMLVGSYSRS--AGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDG 147 (310)
T ss_dssp TEEEEEEEEESS----SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---
T ss_pred eeEEEEEEEEecc--ccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccc
Confidence 8899986544110 1112333444433 23369888777643210 011122223333466655543 122
Q ss_pred ceEEEEEECC-CCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEE-Eeec
Q 046684 219 AYSVIGFDIE-SNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLI-EKVP 287 (373)
Q Consensus 219 ~~~i~~yd~~-~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v-~~~p 287 (373)
.-.++.|... ...|..-....+.......++.- +|+|.|+...++....+|+-.+ -..+|++. ..++
T Consensus 148 ~~SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~D--mG~tWtea~gtls 217 (310)
T PF13859_consen 148 TVSLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGD--MGTTWTEALGTLS 217 (310)
T ss_dssp EEEEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESS--TTSS-EE-TTTTT
T ss_pred eEEEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcc--cceehhhccCccc
Confidence 2578888887 67898763333455566788888 8999999876665458999887 67889973 4454
No 151
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=87.82 E-value=16 Score=30.90 Aligned_cols=167 Identities=13% Similarity=0.107 Sum_probs=86.5
Q ss_pred cceeccCCCCC-CCCCCeE-EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccc
Q 046684 117 RQFRYLPLLNV-SRTNPAV-GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAV 194 (373)
Q Consensus 117 ~~w~~lp~~~~-~~~~~~~-~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~ 194 (373)
+-|+..+|+.. ....+-+ ++.-++.. +.|+..||.. .++..|.++++-+..-.-
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~e-------nSi~~AgGD~-----------~~y~~dlE~G~i~r~~rG------ 154 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSE-------NSILFAGGDG-----------VIYQVDLEDGRIQREYRG------ 154 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCC-------CcEEEecCCe-----------EEEEEEecCCEEEEEEcC------
Confidence 34877777764 2212212 22223332 6688888654 678899999987654322
Q ss_pred cceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCC---CC--Cce--eEEEECCEEEEEEeecCCceE
Q 046684 195 RLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMAD---RL--EFA--TLVSRNQKLTLIGGTCGGDAC 267 (373)
Q Consensus 195 ~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~---~~--~~~--~~~~~~g~l~~~gg~~~~~~~ 267 (373)
...+-++++.-+..==++.|.....+-.+|.++.+-..+-.+... -| .+. +....+..-.+.|| +..+.
T Consensus 155 --HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg--Gp~ls 230 (325)
T KOG0649|consen 155 --HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG--GPKLS 230 (325)
T ss_pred --CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC--CCcee
Confidence 122333433323222233355677888999998876544122211 11 222 23333344344443 23368
Q ss_pred EEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 268 VWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 268 i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
+|.+.. .+=+.+..+|... ..+...++.+++.| ..+.+..|-..
T Consensus 231 lwhLrs----se~t~vfpipa~v-------------~~v~F~~d~vl~~G-~g~~v~~~~l~ 274 (325)
T KOG0649|consen 231 LWHLRS----SESTCVFPIPARV-------------HLVDFVDDCVLIGG-EGNHVQSYTLN 274 (325)
T ss_pred EEeccC----CCceEEEecccce-------------eEeeeecceEEEec-cccceeeeeec
Confidence 999966 5556666666533 44445566666554 22245555543
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=87.72 E-value=16 Score=35.28 Aligned_cols=131 Identities=8% Similarity=0.005 Sum_probs=76.4
Q ss_pred ceEEEEEECCCCcEEecccCCCCC-CCceeEEEECCEEEEEEeecCCc---eEEEEeecCCCCCCeEEEEe-echhhhhh
Q 046684 219 AYSVIGFDIESNTWRELSAPMADR-LEFATLVSRNQKLTLIGGTCGGD---ACVWELSEGGDDDIWCLIEK-VPIEMGMR 293 (373)
Q Consensus 219 ~~~i~~yd~~~~~w~~~~~~~p~~-~~~~~~~~~~g~l~~~gg~~~~~---~~i~~~~~~~~~~~W~~v~~-~p~~~~~~ 293 (373)
...+.+|++.+.+=.....+-|.. |...-+-+++|++.++.|.+... +.+|+-+...-..--+.+-. -|.....
T Consensus 741 Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP- 819 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP- 819 (1012)
T ss_pred CceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccc-
Confidence 456778888776544333344443 33344567899999988876543 66776543100011122111 1222111
Q ss_pred hcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEecccccceee
Q 046684 294 LSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACI 370 (373)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~ 370 (373)
..--..+.+|+.|.++..+.+|..-.|+. . .||+...++ ....+|++|.+.+.|.|-
T Consensus 820 -----------~YD~Ds~~lfltGKGD~~v~~yEv~~esP----y---~lpl~~f~s--p~~hqGl~fl~K~~CdV~ 876 (1012)
T KOG1445|consen 820 -----------HYDYDSNVLFLTGKGDRFVNMYEVIYESP----Y---LLPLAPFMS--PVGHQGLAFLQKLKCDVM 876 (1012)
T ss_pred -----------cccCCCceEEEecCCCceEEEEEecCCCc----e---eeecccccC--CCcccceeeeccccccee
Confidence 11123467888887777899999983333 2 356666655 667889999999998763
No 153
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=87.22 E-value=21 Score=31.86 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=78.2
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
+..+++.||. ...-++|+..++.|-- .++........+... ++ +.+++-|+.+ ..+.
T Consensus 75 ~~~l~aTGGg--DD~AflW~~~~ge~~~--eltgHKDSVt~~~Fs----hd-----gtlLATGdms----------G~v~ 131 (399)
T KOG0296|consen 75 NNNLVATGGG--DDLAFLWDISTGEFAG--ELTGHKDSVTCCSFS----HD-----GTLLATGDMS----------GKVL 131 (399)
T ss_pred CCceEEecCC--CceEEEEEccCCccee--EecCCCCceEEEEEc----cC-----ceEEEecCCC----------ccEE
Confidence 4445555553 4566899999988532 222222222222222 22 6677777665 3566
Q ss_pred EEECCCC--ceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE
Q 046684 174 MYDSRHD--AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR 251 (373)
Q Consensus 174 ~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~ 251 (373)
++...++ .|.....+.. ......|. .+.+... |.....++.|.+.++.-.++ .+-+......+-..-
T Consensus 132 v~~~stg~~~~~~~~e~~d-----ieWl~WHp----~a~illA-G~~DGsvWmw~ip~~~~~kv-~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVED-----IEWLKWHP----RAHILLA-GSTDGSVWMWQIPSQALCKV-MSGHNSPCTCGEFIP 200 (399)
T ss_pred EEEcccCceEEEeecccCc-----eEEEEecc----cccEEEe-ecCCCcEEEEECCCcceeeE-ecCCCCCcccccccC
Confidence 7666554 4766533311 12222222 3455555 56678899999888644443 232333333333444
Q ss_pred CCEEEEEEeecCCceEEEEeec
Q 046684 252 NQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 252 ~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
+|+..+.+ +.+..+.+|+++.
T Consensus 201 dGKr~~tg-y~dgti~~Wn~kt 221 (399)
T KOG0296|consen 201 DGKRILTG-YDDGTIIVWNPKT 221 (399)
T ss_pred CCceEEEE-ecCceEEEEecCC
Confidence 67776665 4455589999976
No 154
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.85 E-value=25 Score=32.18 Aligned_cols=206 Identities=13% Similarity=0.140 Sum_probs=107.7
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCC-CCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCC
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLL-NVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGA 166 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~-~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~ 166 (373)
.+..+|.+|+... ...++.+|+.+++ |..-..- ........ +.. + ++||+ |..+ +
T Consensus 64 ~~~~dg~v~~~~~---~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~--~~~-----~-----G~i~~-g~~~-----g- 121 (370)
T COG1520 64 PADGDGTVYVGTR---DGNIFALNPDTGLVKWSYPLLGAVAQLSGPI--LGS-----D-----GKIYV-GSWD-----G- 121 (370)
T ss_pred cEeeCCeEEEecC---CCcEEEEeCCCCcEEecccCcCcceeccCce--EEe-----C-----CeEEE-eccc-----c-
Confidence 3677999999744 3489999999987 7553221 00111111 111 1 77766 3332 1
Q ss_pred cccceEEEEECCCC--ceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC--cEEecccCCC-C
Q 046684 167 TYESMVEMYDSRHD--AWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN--TWRELSAPMA-D 241 (373)
Q Consensus 167 ~~~~~~~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p-~ 241 (373)
.+++||..++ .|+.-... . .......+..++.+|+.. ....+.++|.++. .|..- .+.+ .
T Consensus 122 ----~~y~ld~~~G~~~W~~~~~~-------~-~~~~~~~v~~~~~v~~~s--~~g~~~al~~~tG~~~W~~~-~~~~~~ 186 (370)
T COG1520 122 ----KLYALDASTGTLVWSRNVGG-------S-PYYASPPVVGDGTVYVGT--DDGHLYALNADTGTLKWTYE-TPAPLS 186 (370)
T ss_pred ----eEEEEECCCCcEEEEEecCC-------C-eEEecCcEEcCcEEEEec--CCCeEEEEEccCCcEEEEEe-cCCccc
Confidence 7888998654 48765543 0 122334566778888762 4578999998865 57643 2221 1
Q ss_pred CCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhh-cCCCCCCCceEEEecCCEEEEEEcCC
Q 046684 242 RLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRL-SGGKASWGGTRCAAGNGAICLYREVG 320 (373)
Q Consensus 242 ~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~ 320 (373)
.+.....+..++.+|+.... . .-.+|.++....+..|+.-...+....... .+.. ....+..++.+|. +...
T Consensus 187 ~~~~~~~~~~~~~vy~~~~~-~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~~~-~~~~ 259 (370)
T COG1520 187 LSIYGSPAIASGTVYVGSDG-Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAV----DGGPVYVDGGVYA-GSYG 259 (370)
T ss_pred cccccCceeecceEEEecCC-C-cceEEEEEccCCcEeeeeeeecccCcccccccccc----cCceEEECCcEEE-EecC
Confidence 12222222556666665432 1 114666654224556876444333321110 0000 1222333444433 3333
Q ss_pred ccEEEEEccccCCcccEEEec
Q 046684 321 LGMIIWREDEDKRKWEWVWVG 341 (373)
Q Consensus 321 ~~~~~yd~~~~~~~~~W~~~~ 341 (373)
.++.++|.. +.+..|+.-.
T Consensus 260 g~~~~l~~~--~G~~~W~~~~ 278 (370)
T COG1520 260 GKLLCLDAD--TGELIWSFPA 278 (370)
T ss_pred CeEEEEEcC--CCceEEEEec
Confidence 458888888 7766777543
No 155
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=86.84 E-value=23 Score=32.42 Aligned_cols=180 Identities=10% Similarity=0.020 Sum_probs=83.4
Q ss_pred eeEEEEeCCCCCc-cccCCCCCCCCceeE-Eee-CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEc
Q 046684 63 LCCYVHNPVSDKW-HVLSLDFLPYPVRPV-SSI-GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVME 139 (373)
Q Consensus 63 ~~~~~~d~~~~~w-~~~~~~~~~~~~~~~-~~~-~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~ 139 (373)
..+...|..+++- .+++....+ ...+ .+. +..+|+.+. ...+.++|+.+++-. ...+.......+++-.+
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~--h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v--~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAP--HAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVV--ATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTE--EEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEE--EEEE-SSEEEEEEE--T
T ss_pred CEEEEEECCCCeEEEEEcCCCCc--eeEEEecCCCCEEEEEcC---CCeEEEEECCcccEE--EEEecCCCcceEEEcCC
Confidence 4666788877653 333332222 2222 233 456888765 468999999998842 22333333233333332
Q ss_pred CCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCce-eeecC--CCccccccceeccCCceE-EECCEEEEEE
Q 046684 140 GPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW-QIIGS--MPVEFAVRLTVWTPNESV-CTRGMLYWIT 215 (373)
Q Consensus 140 ~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~--~p~~~~~~~~~~~~~~~~-~~~g~ly~~g 215 (373)
++.++++.+. ...+.++|.++.+= +.++. ++.. . ...|. .+.+ ...+..|++.
T Consensus 89 ----------G~~~~v~n~~---------~~~v~v~D~~tle~v~~I~~~~~~~~--~-~~~Rv-~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 89 ----------GKYVYVANYE---------PGTVSVIDAETLEPVKTIPTGGMPVD--G-PESRV-AAIVASPGRPEFVVN 145 (369)
T ss_dssp ----------TTEEEEEEEE---------TTEEEEEETTT--EEEEEE--EE-TT--T-S---E-EEEEE-SSSSEEEEE
T ss_pred ----------CCEEEEEecC---------CCceeEeccccccceeeccccccccc--c-cCCCc-eeEEecCCCCEEEEE
Confidence 4444444443 35788899877542 22211 1100 0 00111 1111 1234456654
Q ss_pred cCCceEEEEEECCCCcEEecccCCCCCCCce-eEEEECCEEEEEEeecCCceEEEEeec
Q 046684 216 SARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 216 g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
-.....++..|....+-..+ ......+.-+ ....-+++.++++......+.+++.++
T Consensus 146 lkd~~~I~vVdy~d~~~~~~-~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKNLKV-TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp ETTTTEEEEEETTTSSCEEE-EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred EccCCeEEEEEeccccccce-eeecccccccccccCcccceeeecccccceeEEEeecc
Confidence 45567888888765422211 1111222212 233345676666655555577777654
No 156
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=86.58 E-value=26 Score=32.13 Aligned_cols=189 Identities=12% Similarity=0.124 Sum_probs=89.3
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccce-eccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQF-RYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~ 172 (373)
++++|+.... .+.+.+.|..|++- .+++... ..+.. ....+.+ ..+|+.+ .+ ..+
T Consensus 5 ~~l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~---~~h~~-~~~s~Dg-------r~~yv~~-rd----------g~v 60 (369)
T PF02239_consen 5 GNLFYVVERG--SGSVAVIDGATNKVVARIPTGG---APHAG-LKFSPDG-------RYLYVAN-RD----------GTV 60 (369)
T ss_dssp GGEEEEEEGG--GTEEEEEETTT-SEEEEEE-ST---TEEEE-EE-TT-S-------SEEEEEE-TT----------SEE
T ss_pred ccEEEEEecC--CCEEEEEECCCCeEEEEEcCCC---CceeE-EEecCCC-------CEEEEEc-CC----------CeE
Confidence 4566665532 57899999999764 3344321 11222 2221111 5688875 22 368
Q ss_pred EEEECCCCceeeecCCCccccccceeccCCce-EEECCEEEEEEcCCceEEEEEECCCCcEE-ecccC-CC----CCCCc
Q 046684 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNES-VCTRGMLYWITSARAYSVIGFDIESNTWR-ELSAP-MA----DRLEF 245 (373)
Q Consensus 173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~-~~~~g~ly~~gg~~~~~i~~yd~~~~~w~-~~~~~-~p----~~~~~ 245 (373)
.++|..+++ .+...+.. .....+ +.-+|+..+.+....+.+..+|.++.+-. .++.. ++ ..|.
T Consensus 61 sviD~~~~~--~v~~i~~G-------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv- 130 (369)
T PF02239_consen 61 SVIDLATGK--VVATIKVG-------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV- 130 (369)
T ss_dssp EEEETTSSS--EEEEEE-S-------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E-
T ss_pred EEEECCccc--EEEEEecC-------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc-
Confidence 899998877 33333211 111122 23467755555566788999998876543 33111 11 1122
Q ss_pred eeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec-CCE-EEEEEcCCcc
Q 046684 246 ATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG-NGA-ICLYREVGLG 322 (373)
Q Consensus 246 ~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~-i~~~~~~~~~ 322 (373)
.+++. ..+..|++.-.+.. +||.++- ....=..+..+....+. +..... +++ +++.....+.
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~--~I~vVdy--~d~~~~~~~~i~~g~~~-----------~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTG--EIWVVDY--SDPKNLKVTTIKVGRFP-----------HDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTT--EEEEEET--TTSSCEEEEEEE--TTE-----------EEEEE-TTSSEEEEEEGGGTE
T ss_pred eeEEecCCCCEEEEEEccCC--eEEEEEe--ccccccceeeecccccc-----------cccccCcccceeeecccccce
Confidence 23333 34555666544332 6787764 22221233344444332 223333 333 3343345567
Q ss_pred EEEEEccccCC
Q 046684 323 MIIWREDEDKR 333 (373)
Q Consensus 323 ~~~yd~~~~~~ 333 (373)
+.+.|.+ ++
T Consensus 196 i~viD~~--~~ 204 (369)
T PF02239_consen 196 IAVIDTK--TG 204 (369)
T ss_dssp EEEEETT--TT
T ss_pred eEEEeec--cc
Confidence 8888888 77
No 157
>PRK13684 Ycf48-like protein; Provisional
Probab=86.56 E-value=24 Score=31.79 Aligned_cols=124 Identities=12% Similarity=0.141 Sum_probs=63.0
Q ss_pred ECCCCceeeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEE-C-CCCcEEecccCCCCC-CCceeEEEE
Q 046684 176 DSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFD-I-ESNTWRELSAPMADR-LEFATLVSR 251 (373)
Q Consensus 176 d~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd-~-~~~~w~~~~~~~p~~-~~~~~~~~~ 251 (373)
|....+|+.+.... ...-..++. -+|.++++|.. ....+. . .-.+|+.+..|.... .....++..
T Consensus 200 ~~gg~tW~~~~~~~--------~~~l~~i~~~~~g~~~~vg~~---G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 200 EPGQTAWTPHQRNS--------SRRLQSMGFQPDGNLWMLARG---GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR 268 (334)
T ss_pred CCCCCeEEEeeCCC--------cccceeeeEcCCCCEEEEecC---CEEEEccCCCCCccccccCCccccccceeeEEEc
Confidence 34446798875431 111222233 36788888521 233342 2 335899762222211 111223322
Q ss_pred -CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684 252 -NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR 327 (373)
Q Consensus 252 -~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd 327 (373)
++.+++++... .++.-.+ ...+|+.+.. ++... ...+...++.+|+.| ..+.|+.|+
T Consensus 269 ~~~~~~~~G~~G----~v~~S~d--~G~tW~~~~~~~~~~~~~------------~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 269 TPGEIWAGGGNG----TLLVSKD--GGKTWEKDPVGEEVPSNF------------YKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred CCCCEEEEcCCC----eEEEeCC--CCCCCeECCcCCCCCcce------------EEEEEeCCCceEEEC-CCceEEEec
Confidence 66788776432 3444433 5679998743 32111 134444577777755 445788887
Q ss_pred cc
Q 046684 328 ED 329 (373)
Q Consensus 328 ~~ 329 (373)
..
T Consensus 330 ~~ 331 (334)
T PRK13684 330 GS 331 (334)
T ss_pred CC
Confidence 65
No 158
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=86.28 E-value=9.2 Score=33.85 Aligned_cols=106 Identities=8% Similarity=0.148 Sum_probs=66.1
Q ss_pred eEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684 204 SVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI 283 (373)
Q Consensus 204 ~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v 283 (373)
++-++.+ |++.......|-.++..+.++-.. +..++.+......+|++.+.|.. +..+.+|+..- +.--.+
T Consensus 325 vVdfd~k-yIVsASgDRTikvW~~st~efvRt---l~gHkRGIAClQYr~rlvVSGSS-DntIRlwdi~~----G~cLRv 395 (499)
T KOG0281|consen 325 VVDFDDK-YIVSASGDRTIKVWSTSTCEFVRT---LNGHKRGIACLQYRDRLVVSGSS-DNTIRLWDIEC----GACLRV 395 (499)
T ss_pred eeccccc-eEEEecCCceEEEEeccceeeehh---hhcccccceehhccCeEEEecCC-CceEEEEeccc----cHHHHH
Confidence 3445677 666544556788888888877544 34455666778889998887754 44578998864 221111
Q ss_pred EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 284 EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
-+--.+. ..|+-.+++=.+.|++++++-++|+. +.
T Consensus 396 LeGHEeL-------------vRciRFd~krIVSGaYDGkikvWdl~--aa 430 (499)
T KOG0281|consen 396 LEGHEEL-------------VRCIRFDNKRIVSGAYDGKIKVWDLQ--AA 430 (499)
T ss_pred HhchHHh-------------hhheeecCceeeeccccceEEEEecc--cc
Confidence 1111111 33445567777778888888888887 54
No 159
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.04 E-value=24 Score=31.25 Aligned_cols=218 Identities=17% Similarity=0.162 Sum_probs=90.5
Q ss_pred CCccccCCCCC-C-CCc-eeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCC-CCCCCCCeEEEEEcCCCCCCCCC
Q 046684 73 DKWHVLSLDFL-P-YPV-RPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLL-NVSRTNPAVGIVMEGPAQHGPFP 148 (373)
Q Consensus 73 ~~w~~~~~~~~-~-~~~-~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~-~~~~~~~~~~~~~~~~~~~~~~~ 148 (373)
..|........ + ... ..+...++..++.|. ...++.-.=.=.+|.+++.. +.+.....+.....
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~---~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~--------- 114 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE---PGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGD--------- 114 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEE---TTEEEEESSTTSS-EE----TT-SS-EEEEEEEET---------
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcC---CceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCC---------
Confidence 57887743322 2 122 234445667777765 23444444455679998632 22333334444442
Q ss_pred ceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceE-EECCEEEEEEcCCceEEEEEEC
Q 046684 149 NFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESV-CTRGMLYWITSARAYSVIGFDI 227 (373)
Q Consensus 149 ~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~g~ly~~gg~~~~~i~~yd~ 227 (373)
..+++++... .++.=.-...+|+.+..-.. ... ..+. .-+|.+..+ +..-.-....|+
T Consensus 115 -~~~~l~~~~G-----------~iy~T~DgG~tW~~~~~~~~-------gs~-~~~~r~~dG~~vav-s~~G~~~~s~~~ 173 (302)
T PF14870_consen 115 -GSAELAGDRG-----------AIYRTTDGGKTWQAVVSETS-------GSI-NDITRSSDGRYVAV-SSRGNFYSSWDP 173 (302)
T ss_dssp -TEEEEEETT-------------EEEESSTTSSEEEEE-S-----------E-EEEEE-TTS-EEEE-ETTSSEEEEE-T
T ss_pred -CcEEEEcCCC-----------cEEEeCCCCCCeeEcccCCc-------cee-EeEEECCCCcEEEE-ECcccEEEEecC
Confidence 5666666432 23332334467998765321 111 1112 235665545 455566778899
Q ss_pred CCCcEEecccCCCCCC-CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684 228 ESNTWRELSAPMADRL-EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC 306 (373)
Q Consensus 228 ~~~~w~~~~~~~p~~~-~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~ 306 (373)
-...|... ..+..+ ...-...-++.|+++. .+..+..=+... +.+.|.+- ..|..... ..-..+
T Consensus 174 G~~~w~~~--~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~--~~~~w~~~-~~~~~~~~--------~~~ld~ 238 (302)
T PF14870_consen 174 GQTTWQPH--NRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPD--DGETWSEP-IIPIKTNG--------YGILDL 238 (302)
T ss_dssp T-SS-EEE--E--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TT--EEEEE----B-TTSS----------S-EEEE
T ss_pred CCccceEE--ccCccceehhceecCCCCEEEEe--CCcEEEEccCCC--Cccccccc-cCCcccCc--------eeeEEE
Confidence 99999988 333223 2222233477888875 333233333112 45678772 23321110 001333
Q ss_pred Eec-CCEEEEEEcCCccEEEEEccccCCcccEEEeccc
Q 046684 307 AAG-NGAICLYREVGLGMIIWREDEDKRKWEWVWVGGC 343 (373)
Q Consensus 307 ~~~-~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~ 343 (373)
+.. ++.+++.++.. .+.+..+. -+ +|++.+..
T Consensus 239 a~~~~~~~wa~gg~G--~l~~S~Dg-Gk--tW~~~~~~ 271 (302)
T PF14870_consen 239 AYRPPNEIWAVGGSG--TLLVSTDG-GK--TWQKDRVG 271 (302)
T ss_dssp EESSSS-EEEEESTT---EEEESST-TS--S-EE-GGG
T ss_pred EecCCCCEEEEeCCc--cEEEeCCC-Cc--cceECccc
Confidence 333 68888877663 45555441 56 89988654
No 160
>PRK01742 tolB translocation protein TolB; Provisional
Probab=85.57 E-value=32 Score=32.25 Aligned_cols=182 Identities=16% Similarity=0.062 Sum_probs=83.4
Q ss_pred eEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCC
Q 046684 52 WFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT 130 (373)
Q Consensus 52 ~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~ 130 (373)
.++.....+....++.+|..+..-..+......... ..-+.+| .|.+.....+..+++++|..+++.+++......
T Consensus 217 ~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~-~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~-- 293 (429)
T PRK01742 217 KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGA-PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGN-- 293 (429)
T ss_pred EEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCc-eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCC--
Confidence 343333333335677788766544333221111111 2233454 444443333345789999988887766432211
Q ss_pred CCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCE
Q 046684 131 NPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGM 210 (373)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ 210 (373)
........++ .+|+...... ....++.++..++.=+.+... . .. ....-+|+
T Consensus 294 ~~~~~wSpDG---------~~i~f~s~~~--------g~~~I~~~~~~~~~~~~l~~~---------~-~~-~~~SpDG~ 345 (429)
T PRK01742 294 NTEPSWSPDG---------QSILFTSDRS--------GSPQVYRMSASGGGASLVGGR---------G-YS-AQISADGK 345 (429)
T ss_pred cCCEEECCCC---------CEEEEEECCC--------CCceEEEEECCCCCeEEecCC---------C-CC-ccCCCCCC
Confidence 1111111111 3455544222 124566666655432322110 0 11 11222444
Q ss_pred -EEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEe
Q 046684 211 -LYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWEL 271 (373)
Q Consensus 211 -ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~ 271 (373)
+++.+ . ..+..+|+.++++..+ ... ..... ....-+|+..+.+...+. ..+|.+
T Consensus 346 ~ia~~~-~--~~i~~~Dl~~g~~~~l-t~~-~~~~~-~~~sPdG~~i~~~s~~g~-~~~l~~ 400 (429)
T PRK01742 346 TLVMIN-G--DNVVKQDLTSGSTEVL-SST-FLDES-PSISPNGIMIIYSSTQGL-GKVLQL 400 (429)
T ss_pred EEEEEc-C--CCEEEEECCCCCeEEe-cCC-CCCCC-ceECCCCCEEEEEEcCCC-ceEEEE
Confidence 44442 2 4577799999988766 221 11111 123446766666554333 345554
No 161
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=85.42 E-value=24 Score=32.21 Aligned_cols=198 Identities=11% Similarity=0.001 Sum_probs=83.2
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
+..+++.+..++...++..|..|++-++|-.-+..... ... +... + ..+|.+... ..+.
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~-~s~~---~-----~~~~Yv~~~-----------~~l~ 105 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGF-LSPD---D-----RALYYVKNG-----------RSLR 105 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-E-E-TT---S-----SEEEEEETT-----------TEEE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceE-EecC---C-----CeEEEEECC-----------CeEE
Confidence 44566655556788999999999999998776532221 222 2111 1 455434211 2467
Q ss_pred EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEE---c------------------CCceEEEEEECCCCcE
Q 046684 174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWIT---S------------------ARAYSVIGFDIESNTW 232 (373)
Q Consensus 174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~g---g------------------~~~~~i~~yd~~~~~w 232 (373)
..|.+|.+=+.+-..|..+. -+...++.-++..++-. . .-...|...|+.+++.
T Consensus 106 ~vdL~T~e~~~vy~~p~~~~-----g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 106 RVDLDTLEERVVYEVPDDWK-----GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp EEETTT--EEEEEE--TTEE-----EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred EEECCcCcEEEEEECCcccc-----cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 77777766555555543211 01111111233333221 0 1246788899999888
Q ss_pred EecccCCCCCCCceeEEE-ECCEEEEEEeecCC---ceEEEEeecCCCCCCeEEEE-eechhhhhhhcCCCCCCCceEEE
Q 046684 233 RELSAPMADRLEFATLVS-RNQKLTLIGGTCGG---DACVWELSEGGDDDIWCLIE-KVPIEMGMRLSGGKASWGGTRCA 307 (373)
Q Consensus 233 ~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~---~~~i~~~~~~~~~~~W~~v~-~~p~~~~~~~~~~~~~~~~~~~~ 307 (373)
+.+ ..-.. -.++-... .+..+.+++....- .-.||.+++ +.....++. .++.+.. ++...
T Consensus 181 ~~v-~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--dg~~~~~v~~~~~~e~~-----------gHEfw 245 (386)
T PF14583_consen 181 KVV-FEDTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--DGSNVKKVHRRMEGESV-----------GHEFW 245 (386)
T ss_dssp EEE-EEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--TS---EESS---TTEEE-----------EEEEE
T ss_pred eEE-EecCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--CCCcceeeecCCCCccc-----------ccccc
Confidence 877 32211 11222222 25566666432211 136899988 444444443 3333222 24444
Q ss_pred ec-CCEEEEEE----cCCccEEEEEccccCCc
Q 046684 308 AG-NGAICLYR----EVGLGMIIWREDEDKRK 334 (373)
Q Consensus 308 ~~-~~~i~~~~----~~~~~~~~yd~~~~~~~ 334 (373)
.. |..|+... +...-+..||++ +.+
T Consensus 246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~--t~~ 275 (386)
T PF14583_consen 246 VPDGSTIWYDSYTPGGQDFWIAGYDPD--TGE 275 (386)
T ss_dssp -TTSS-EEEEEEETTT--EEEEEE-TT--T--
T ss_pred cCCCCEEEEEeecCCCCceEEEeeCCC--CCC
Confidence 44 44555443 223357788998 773
No 162
>smart00284 OLF Olfactomedin-like domains.
Probab=85.19 E-value=23 Score=30.36 Aligned_cols=159 Identities=13% Similarity=0.219 Sum_probs=85.5
Q ss_pred CCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCC---------C-CeEEEEEcCCCCCCCCCceEEEE
Q 046684 85 YPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT---------N-PAVGIVMEGPAQHGPFPNFRIYV 154 (373)
Q Consensus 85 ~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~kl~~ 154 (373)
-.+.+.++.||-+|..-.. ...+..||..+++-.....+|.... . ..+-+..|. .-|.+
T Consensus 74 ~~GtG~VVYngslYY~~~~--s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE---------~GLWv 142 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKFN--SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDE---------NGLWV 142 (255)
T ss_pred cccccEEEECceEEEEecC--CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcC---------CceEE
Confidence 3444567788888885443 5789999999998754333332110 0 011111111 45666
Q ss_pred EeccCCCCCCCCcccceEEEEECCC----CceeeecCCCccccccceeccCCceEEECCEEEEEEc---CCceEEEEEEC
Q 046684 155 AGGMSDEPRGGATYESMVEMYDSRH----DAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITS---ARAYSVIGFDI 227 (373)
Q Consensus 155 ~gg~~~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg---~~~~~i~~yd~ 227 (373)
|-... .......+-..|+.+ ++|..-..- +....+.++-|.||++.. ....-..+||+
T Consensus 143 IYat~-----~~~g~ivvSkLnp~tL~ve~tW~T~~~k----------~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt 207 (255)
T smart00284 143 IYATE-----QNAGKIVISKLNPATLTIENTWITTYNK----------RSASNAFMICGILYVTRSLGSKGEKVFYAYDT 207 (255)
T ss_pred EEecc-----CCCCCEEEEeeCcccceEEEEEEcCCCc----------ccccccEEEeeEEEEEccCCCCCcEEEEEEEC
Confidence 64332 222222333344433 467653222 223345677899999952 22455789999
Q ss_pred CCCcEEecccCCCCCCCceeEEEE---CCEEEEEEeecCCceEEEEee
Q 046684 228 ESNTWRELSAPMADRLEFATLVSR---NQKLTLIGGTCGGDACVWELS 272 (373)
Q Consensus 228 ~~~~w~~~~~~~p~~~~~~~~~~~---~g~l~~~gg~~~~~~~i~~~~ 272 (373)
.+++=..+..+++........... +.+||+-. +..+..|++.
T Consensus 208 ~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd---ng~~l~Y~v~ 252 (255)
T smart00284 208 NTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN---NGHLVHYDIA 252 (255)
T ss_pred CCCccceeeeeeccccccceeceeCCCCCeEEEEe---CCeEEEEEEE
Confidence 987755554455554444444443 56777753 3334555553
No 163
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.17 E-value=56 Score=34.74 Aligned_cols=221 Identities=10% Similarity=0.065 Sum_probs=108.1
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCC----------CC--CCCeEEEEEcCCCCCCCCCceEEEEEec
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNV----------SR--TNPAVGIVMEGPAQHGPFPNFRIYVAGG 157 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~kl~~~gg 157 (373)
+...+|.+|+.... .+.+.++|+..+.-..+..... .. .-..+++-.++ +.||+...
T Consensus 575 vd~~~g~lyVaDs~--n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g---------n~LYVaDt 643 (1057)
T PLN02919 575 IDLLNNRLFISDSN--HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK---------NLLYVADT 643 (1057)
T ss_pred EECCCCeEEEEECC--CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC---------CEEEEEeC
Confidence 33457889997653 5789999987654433332110 00 11222222111 56787643
Q ss_pred cCCCCCCCCcccceEEEEECCCCceeeecCCCc-c--cc---cc-ce-eccCCceEEE--CCEEEEEEcCCceEEEEEEC
Q 046684 158 MSDEPRGGATYESMVEMYDSRHDAWQIIGSMPV-E--FA---VR-LT-VWTPNESVCT--RGMLYWITSARAYSVIGFDI 227 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~--~~---~~-~~-~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~ 227 (373)
.+ ..+.++|..++.=+.+..... . +. .. .. ......+++- +|.+|+. ....+.|..||+
T Consensus 644 ~n----------~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa-d~~~~~I~v~d~ 712 (1057)
T PLN02919 644 EN----------HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA-MAGQHQIWEYNI 712 (1057)
T ss_pred CC----------ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE-ECCCCeEEEEEC
Confidence 22 357777776665443322100 0 00 00 00 0111223333 5789987 345678999999
Q ss_pred CCCcEEecccCC---------CC--C-CCceeEEEE-CC-EEEEEEeecCCceEEEEeecCCCCCCeEEEEe-e---chh
Q 046684 228 ESNTWRELSAPM---------AD--R-LEFATLVSR-NQ-KLTLIGGTCGGDACVWELSEGGDDDIWCLIEK-V---PIE 289 (373)
Q Consensus 228 ~~~~w~~~~~~~---------p~--~-~~~~~~~~~-~g-~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~-~---p~~ 289 (373)
.++....+...- +. . ..-.+++.. +| .||+.... ...+.+|+++. ..-+.+.. - +..
T Consensus 713 ~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-n~~Irv~D~~t----g~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 713 SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-SSSIRALDLKT----GGSRLLAGGDPTFSDN 787 (1057)
T ss_pred CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-CCeEEEEECCC----CcEEEEEecccccCcc
Confidence 887665441110 00 0 011123333 33 58887643 33477787764 33222211 0 000
Q ss_pred hhhhhcC--C----CCCCCceEEE-ecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684 290 MGMRLSG--G----KASWGGTRCA-AGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 290 ~~~~~~~--~----~~~~~~~~~~-~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
. ..+.. + .....+..++ ..++.||+.+...+.|.+||++ ++ ....+.+
T Consensus 788 l-~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~--tg--~v~tiaG 842 (1057)
T PLN02919 788 L-FKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA--TK--RVTTLAG 842 (1057)
T ss_pred c-ccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC--CC--eEEEEec
Confidence 0 00000 0 0011133333 3467899999888899999999 88 6555543
No 164
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=85.09 E-value=22 Score=30.10 Aligned_cols=184 Identities=16% Similarity=0.150 Sum_probs=89.8
Q ss_pred EEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEE
Q 046684 97 LLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYD 176 (373)
Q Consensus 97 l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd 176 (373)
|++..|+ ...+..|...|+...+.-+.+...-+ .+.+- ++.+..+.+|. ..+-+||
T Consensus 12 iLvsA~Y--DhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiT----------pdk~~LAaa~~-----------qhvRlyD 67 (311)
T KOG0315|consen 12 ILVSAGY--DHTIRFWQALTGICSRTIQHPDSQVN-RLEIT----------PDKKDLAAAGN-----------QHVRLYD 67 (311)
T ss_pred EEEeccC--cceeeeeehhcCeEEEEEecCcccee-eEEEc----------CCcchhhhccC-----------CeeEEEE
Confidence 4444444 45677778888776553222222211 11111 11555555554 3688999
Q ss_pred CCCCceeeecCCCccccccceeccCCce--EEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCE
Q 046684 177 SRHDAWQIIGSMPVEFAVRLTVWTPNES--VCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQK 254 (373)
Q Consensus 177 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~--~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~ 254 (373)
..+++=..+..+ .....+..+ ...+|+--.- |.....+-+.|+.+-+-.+. ...+.+. -.++..-+.
T Consensus 68 ~~S~np~Pv~t~-------e~h~kNVtaVgF~~dgrWMyT-gseDgt~kIWdlR~~~~qR~-~~~~spV--n~vvlhpnQ 136 (311)
T KOG0315|consen 68 LNSNNPNPVATF-------EGHTKNVTAVGFQCDGRWMYT-GSEDGTVKIWDLRSLSCQRN-YQHNSPV--NTVVLHPNQ 136 (311)
T ss_pred ccCCCCCceeEE-------eccCCceEEEEEeecCeEEEe-cCCCceEEEEeccCcccchh-ccCCCCc--ceEEecCCc
Confidence 988762222111 011112111 2346665555 34566777888876433333 2222111 123333233
Q ss_pred EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 255 LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 255 l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
--++.|.....+.||++.+ +.-+.. -+|..... .....+.-++...+.....+..+++++-
T Consensus 137 teLis~dqsg~irvWDl~~----~~c~~~-liPe~~~~---------i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGE----NSCTHE-LIPEDDTS---------IQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred ceEEeecCCCcEEEEEccC----Cccccc-cCCCCCcc---------eeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 3333345555689999976 433321 23332211 0233344466666666666788888887
No 165
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=84.78 E-value=11 Score=36.78 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=69.1
Q ss_pred eEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684 204 SVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI 283 (373)
Q Consensus 204 ~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v 283 (373)
+.++-+.-|+.+|.....+...|..++.-.++ ..- ....-..++..-...|++.|.....+.+|++.. .+ .+
T Consensus 541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi-F~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~----~~--~v 612 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI-FTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN----GS--LV 612 (707)
T ss_pred EEECCcccccccCCCCceEEEEEcCCCcEEEE-ecC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCC----Cc--ch
Confidence 45667889999888888899999988876555 211 111222333444555777776767789999965 21 11
Q ss_pred EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 284 EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
..+- .+ .+. ....-+..+|.+++.+|..+.+.+||..
T Consensus 613 ~~l~----~H-t~t----i~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 613 KQLK----GH-TGT----IYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred hhhh----cc-cCc----eeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 1111 11 111 0234445688999999998899999997
No 166
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.05 E-value=26 Score=29.99 Aligned_cols=111 Identities=12% Similarity=0.162 Sum_probs=61.7
Q ss_pred EEEC-CEEEEEEcCCceEEEEEECCCC--cEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeE
Q 046684 205 VCTR-GMLYWITSARAYSVIGFDIESN--TWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWC 281 (373)
Q Consensus 205 ~~~~-g~ly~~gg~~~~~i~~yd~~~~--~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~ 281 (373)
++++ .+-|++-|.....+.+-|+.++ .|+.+ . ..|......++++. .++|.+.+ .+.+...++ .+.-|.
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-l---g~RiE~sa~vvgdf-VV~GCy~g-~lYfl~~~t--Gs~~w~ 88 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-L---GVRIECSAIVVGDF-VVLGCYSG-GLYFLCVKT--GSQIWN 88 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh-h---CceeeeeeEEECCE-EEEEEccC-cEEEEEecc--hhheee
Confidence 4454 3444444667788999999987 48766 1 22333344445655 44454433 223333333 234455
Q ss_pred EEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEE
Q 046684 282 LIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWV 338 (373)
Q Consensus 282 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~ 338 (373)
-+..-..+. ...+...++.||.- ..+...++.|++ +..+.|+
T Consensus 89 f~~~~~vk~------------~a~~d~~~glIycg-shd~~~yalD~~--~~~cVyk 130 (354)
T KOG4649|consen 89 FVILETVKV------------RAQCDFDGGLIYCG-SHDGNFYALDPK--TYGCVYK 130 (354)
T ss_pred eeehhhhcc------------ceEEcCCCceEEEe-cCCCcEEEeccc--ccceEEe
Confidence 443222111 25555667777774 344578888999 8766777
No 167
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.81 E-value=27 Score=32.48 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=81.9
Q ss_pred CCceEEEEEecCCC-eeEEEEeCCCC-----CccccCCCCCCCCceeEEeeCcEEEEeeCC-CCceEEEEEcCcccc---
Q 046684 49 RPAWFLALPTRNRG-LCCYVHNPVSD-----KWHVLSLDFLPYPVRPVSSIGSFLLLRPIN-STILQLVLCNPFTRQ--- 118 (373)
Q Consensus 49 ~~~~l~~~~~~~~~-~~~~~~d~~~~-----~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~-~~~~~~~v~np~t~~--- 118 (373)
...++++....+.. +.++..|.... .|..+.... ......+...++.+|+.... .....+...+..+..
T Consensus 237 d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~ 315 (414)
T PF02897_consen 237 DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAE 315 (414)
T ss_dssp TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGG
T ss_pred cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccccc
Confidence 34455555555555 78888888764 566553322 22233466668888886654 335678888777654
Q ss_pred ee-ccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECC-CCceeeecCCCccccccc
Q 046684 119 FR-YLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSR-HDAWQIIGSMPVEFAVRL 196 (373)
Q Consensus 119 w~-~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~~~~~~ 196 (373)
|. .+.+......-..+.+.. +++++..-. .....+.+|+.. +..-..++..+.
T Consensus 316 ~~~~l~~~~~~~~l~~~~~~~-----------~~Lvl~~~~--------~~~~~l~v~~~~~~~~~~~~~~p~~------ 370 (414)
T PF02897_consen 316 WWTVLIPEDEDVSLEDVSLFK-----------DYLVLSYRE--------NGSSRLRVYDLDDGKESREIPLPEA------ 370 (414)
T ss_dssp EEEEEE--SSSEEEEEEEEET-----------TEEEEEEEE--------TTEEEEEEEETT-TEEEEEEESSSS------
T ss_pred ceeEEcCCCCceeEEEEEEEC-----------CEEEEEEEE--------CCccEEEEEECCCCcEEeeecCCcc------
Confidence 55 444332222222222222 566665422 235688999998 333333332211
Q ss_pred eeccCCceEE---ECCEEEEEE--cCCceEEEEEECCCCcEEec
Q 046684 197 TVWTPNESVC---TRGMLYWIT--SARAYSVIGFDIESNTWREL 235 (373)
Q Consensus 197 ~~~~~~~~~~---~~g~ly~~g--g~~~~~i~~yd~~~~~w~~~ 235 (373)
....... -.+.+++.- -.....++.||+++++.+.+
T Consensus 371 ---g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 371 ---GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp ---SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred ---eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 1001111 123444442 23467899999999988765
No 168
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=83.65 E-value=24 Score=32.03 Aligned_cols=112 Identities=12% Similarity=0.021 Sum_probs=62.0
Q ss_pred eEEEEEECCCCcEEecccCCCCCCCceeEEEEC-CEEEEEEee--------cCCceEEEEeecCCCCCCeEEEEeechhh
Q 046684 220 YSVIGFDIESNTWRELSAPMADRLEFATLVSRN-QKLTLIGGT--------CGGDACVWELSEGGDDDIWCLIEKVPIEM 290 (373)
Q Consensus 220 ~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~-g~l~~~gg~--------~~~~~~i~~~~~~~~~~~W~~v~~~p~~~ 290 (373)
+.+..+|.++.+-... .+ ......++..-+ ..||+...+ +...+.+|+.. +.+.+.+++.+.
T Consensus 27 ~~v~ViD~~~~~v~g~-i~--~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~------t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM-TD--GGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ------THLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEE-EE--ccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECc------cCcEEeEEccCC
Confidence 6788899888665432 22 222222333334 467777652 22338888874 456666666533
Q ss_pred hhhhcCCCCCCCceEEEecCCEEEEEEcC-CccEEEEEccccCCcccEEEecccccCC
Q 046684 291 GMRLSGGKASWGGTRCAAGNGAICLYREV-GLGMIIWREDEDKRKWEWVWVGGCCLTG 347 (373)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~yd~~~~~~~~~W~~~~~~~~~~ 347 (373)
-.++..+ .....+.+...|..+|+.+.. ...+-+.|.+ ++ +.+...+.+.
T Consensus 98 ~p~~~~~-~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~--~~----kvv~ei~vp~ 148 (352)
T TIGR02658 98 GPRFLVG-TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE--GK----AFVRMMDVPD 148 (352)
T ss_pred Cchhhcc-CccceEEECCCCCEEEEecCCCCCEEEEEECC--CC----cEEEEEeCCC
Confidence 2221111 011134444556678888755 6789999999 77 4444444433
No 169
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=83.60 E-value=39 Score=31.72 Aligned_cols=183 Identities=10% Similarity=0.076 Sum_probs=92.0
Q ss_pred eeEEEEeCCCCCccccCCCCCC-CCceeEE---eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEE
Q 046684 63 LCCYVHNPVSDKWHVLSLDFLP-YPVRPVS---SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVM 138 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~~~~~~~-~~~~~~~---~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~ 138 (373)
..++++++..+...+-.-.+.. ...+..+ .-||.+..... ...+.+|++-+++..+-.. ..+-.-++++++.
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS---~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDS---GGNILIWSKGTNRISKQVH-AHDGGVFSLCMLR 297 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecC---CceEEEEeCCCceEEeEee-ecCCceEEEEEec
Confidence 5666678877766554322221 1133222 22565555443 5679999998887755333 3334445666665
Q ss_pred cCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcC
Q 046684 139 EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSA 217 (373)
Q Consensus 139 ~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~ 217 (373)
+ ++|+- ||.+ ..+..+|..-++=+++ .+|.+ ......+.- .+-+|+ |.
T Consensus 298 ~----------GtllS-GgKD----------Rki~~Wd~~y~k~r~~-elPe~-------~G~iRtv~e~~~di~v--GT 346 (626)
T KOG2106|consen 298 D----------GTLLS-GGKD----------RKIILWDDNYRKLRET-ELPEQ-------FGPIRTVAEGKGDILV--GT 346 (626)
T ss_pred C----------ccEee-cCcc----------ceEEeccccccccccc-cCchh-------cCCeeEEecCCCcEEE--ee
Confidence 3 67776 7765 3455666322222222 23332 122222222 234554 34
Q ss_pred CceEEEEEECCCCcEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684 218 RAYSVIGFDIESNTWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI 288 (373)
Q Consensus 218 ~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~ 288 (373)
..+.|+.=.++++ ++.+ .. .....--+++.. ...+++..|.+. .+.+|+ + ..-.|+++..-|.
T Consensus 347 trN~iL~Gt~~~~-f~~~-v~-gh~delwgla~hps~~q~~T~gqdk-~v~lW~--~--~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 347 TRNFILQGTLENG-FTLT-VQ-GHGDELWGLATHPSKNQLLTCGQDK-HVRLWN--D--HKLEWTKIIEDPA 410 (626)
T ss_pred ccceEEEeeecCC-ceEE-EE-ecccceeeEEcCCChhheeeccCcc-eEEEcc--C--CceeEEEEecCce
Confidence 5566666555543 2222 11 111122233332 344555555443 368999 3 4578999876654
No 170
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.16 E-value=37 Score=31.04 Aligned_cols=139 Identities=12% Similarity=0.154 Sum_probs=74.8
Q ss_pred eeEEEEeCCCCC--ccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccc--eec-cCCCCCCCCCCeEEEE
Q 046684 63 LCCYVHNPVSDK--WHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRY-LPLLNVSRTNPAVGIV 137 (373)
Q Consensus 63 ~~~~~~d~~~~~--w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~-lp~~~~~~~~~~~~~~ 137 (373)
..+.++|+.+.+ |............-.+...+|.||+... ...++++|+.+++ |.. ++. . .+.. ...+.
T Consensus 78 G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~---~g~~y~ld~~~G~~~W~~~~~~-~-~~~~-~~~v~ 151 (370)
T COG1520 78 GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW---DGKLYALDASTGTLVWSRNVGG-S-PYYA-SPPVV 151 (370)
T ss_pred CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc---cceEEEEECCCCcEEEEEecCC-C-eEEe-cCcEE
Confidence 378889998875 8655332001111123334888888776 3489999997765 644 222 1 1111 11111
Q ss_pred EcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECCEEEEEE
Q 046684 138 MEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWIT 215 (373)
Q Consensus 138 ~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~g 215 (373)
. + +.+|+... ...++..|..+++ |+.-...+. ........+..++.+|+..
T Consensus 152 ~-----~-----~~v~~~s~-----------~g~~~al~~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~~vy~~~ 204 (370)
T COG1520 152 G-----D-----GTVYVGTD-----------DGHLYALNADTGTLKWTYETPAPL------SLSIYGSPAIASGTVYVGS 204 (370)
T ss_pred c-----C-----cEEEEecC-----------CCeEEEEEccCCcEEEEEecCCcc------ccccccCceeecceEEEec
Confidence 1 1 66666431 2457777777654 874433210 0112222236778888873
Q ss_pred cCCceEEEEEECCCC--cEEe
Q 046684 216 SARAYSVIGFDIESN--TWRE 234 (373)
Q Consensus 216 g~~~~~i~~yd~~~~--~w~~ 234 (373)
......+.++|++++ .|+.
T Consensus 205 ~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 205 DGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CCCcceEEEEEccCCcEeeee
Confidence 211347999999866 4763
No 171
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=82.73 E-value=32 Score=29.96 Aligned_cols=144 Identities=12% Similarity=0.076 Sum_probs=78.4
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeE--EEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAV--GIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM 171 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~--~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~ 171 (373)
++.|....| ......||..+++-... .. .|+. ..+.-..+ + .+.|+-|+.+ ..
T Consensus 156 D~~ilT~SG---D~TCalWDie~g~~~~~--f~----GH~gDV~slsl~p~-~-----~ntFvSg~cD----------~~ 210 (343)
T KOG0286|consen 156 DNHILTGSG---DMTCALWDIETGQQTQV--FH----GHTGDVMSLSLSPS-D-----GNTFVSGGCD----------KS 210 (343)
T ss_pred CCceEecCC---CceEEEEEcccceEEEE--ec----CCcccEEEEecCCC-C-----CCeEEecccc----------cc
Confidence 666666666 57788999999875431 11 1221 12221111 2 7889998876 45
Q ss_pred EEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCC-CceeEEE
Q 046684 172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL-EFATLVS 250 (373)
Q Consensus 172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~-~~~~~~~ 250 (373)
..++|.+.+.=. +.++. +....+.-..+-+|.-+.. |......-.||+..++=-.+-...+... .......
T Consensus 211 aklWD~R~~~c~--qtF~g-----hesDINsv~ffP~G~afat-GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 211 AKLWDVRSGQCV--QTFEG-----HESDINSVRFFPSGDAFAT-GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred eeeeeccCccee--Eeecc-----cccccceEEEccCCCeeee-cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 677887766422 22211 1112222222335666666 5667778889998875433312221111 1122344
Q ss_pred ECCEEEEEEeecCCceEEEEe
Q 046684 251 RNQKLTLIGGTCGGDACVWEL 271 (373)
Q Consensus 251 ~~g~l~~~gg~~~~~~~i~~~ 271 (373)
.-|+|.+.|. .+....+|+.
T Consensus 283 ~SGRlLfagy-~d~~c~vWDt 302 (343)
T KOG0286|consen 283 KSGRLLFAGY-DDFTCNVWDT 302 (343)
T ss_pred ccccEEEeee-cCCceeEeec
Confidence 5799888874 4445688875
No 172
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=82.35 E-value=36 Score=30.37 Aligned_cols=243 Identities=11% Similarity=0.063 Sum_probs=116.4
Q ss_pred CcEEEEeeCCCC--ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684 94 GSFLLLRPINST--ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM 171 (373)
Q Consensus 94 ~g~l~~~gg~~~--~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~ 171 (373)
+..+|.+..... .-.-+.+|+..++.+.+......-..++-..++.. ++.+....+. ...
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~---------g~~vf~AnY~---------~g~ 112 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED---------GRFVFVANYH---------SGS 112 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC---------CCEEEEEEcc---------Cce
Confidence 346888766522 23456678887887776544433333332223211 3333333332 245
Q ss_pred EEEEECCCC-c-eeeecCCCccccccc----eeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccC-CCCCCC
Q 046684 172 VEMYDSRHD-A-WQIIGSMPVEFAVRL----TVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAP-MADRLE 244 (373)
Q Consensus 172 ~~~yd~~~~-~-W~~~~~~p~~~~~~~----~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~-~p~~~~ 244 (373)
+-+|-..++ . |..+...-.....|+ .+..+.....-+|++.+.......+|..|+.+.+..+..... .+..-.
T Consensus 113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G 192 (346)
T COG2706 113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG 192 (346)
T ss_pred EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence 566655442 2 322211100000001 011222222335655544444567899999987666544111 111111
Q ss_pred ceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC
Q 046684 245 FATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG 320 (373)
Q Consensus 245 ~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 320 (373)
-.++ .--++++..+-..-...+.+|+++. ...+.+.+.. ||.. +. +.. ......+...|..||+.+...
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~--~~g~~~~lQ~i~tlP~d-F~---g~~-~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNP--AVGKFEELQTIDTLPED-FT---GTN-WAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcC--CCceEEEeeeeccCccc-cC---CCC-ceeEEEECCCCCEEEEecCCC
Confidence 1233 3346665443334444589999987 5677777766 4433 11 110 011222223466888888777
Q ss_pred ccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccccccee
Q 046684 321 LGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACAC 369 (373)
Q Consensus 321 ~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~ 369 (373)
+.|.+|.....++ +-..+...+..+.. .+.|.|.|+=+=++
T Consensus 266 dsI~~f~V~~~~g--~L~~~~~~~teg~~------PR~F~i~~~g~~Li 306 (346)
T COG2706 266 DSIAVFSVDPDGG--KLELVGITPTEGQF------PRDFNINPSGRFLI 306 (346)
T ss_pred CeEEEEEEcCCCC--EEEEEEEeccCCcC------CccceeCCCCCEEE
Confidence 7888886663256 44444444443332 23466666543333
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=82.32 E-value=39 Score=30.71 Aligned_cols=140 Identities=10% Similarity=0.022 Sum_probs=74.7
Q ss_pred ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684 170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV 249 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~ 249 (373)
..+.++|..|+.=-.--..|. .........||.+.+.+ ....+|-++|+.+++-..........+....+.
T Consensus 154 n~v~iWnv~tgeali~l~hpd--------~i~S~sfn~dGs~l~Tt-ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPD--------MVYSMSFNRDGSLLCTT-CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred ceEEEEeccCCceeeecCCCC--------eEEEEEeccCCceeeee-cccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 467778887776211111221 11112234567777663 456789999999988665521222233333444
Q ss_pred EECCEEEEEEeecCC--ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE-ecCCEEEEEEcCCccEEEE
Q 046684 250 SRNQKLTLIGGTCGG--DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA-AGNGAICLYREVGLGMIIW 326 (373)
Q Consensus 250 ~~~g~l~~~gg~~~~--~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~y 326 (373)
.-+|.|+..|...-. .+.+|+++...+...-..+..-..-. +.+. ...+.||+.|-+++.|-.|
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-------------~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-------------LPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeEEeccCCceE-------------EeeecCCCCEEEEEecCCcceEEE
Confidence 556665554433222 27789887632222222222211111 1122 2346899999888889999
Q ss_pred EccccCC
Q 046684 327 REDEDKR 333 (373)
Q Consensus 327 d~~~~~~ 333 (373)
... ..
T Consensus 292 Eit--~d 296 (472)
T KOG0303|consen 292 EIT--NE 296 (472)
T ss_pred Eec--CC
Confidence 998 55
No 174
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.81 E-value=43 Score=30.93 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=49.5
Q ss_pred ceEEECCEEEEEEcCCceEEEEEECCCCcEEecc-c-----CC--CCC--CCceeEEEECCEEEEEEeecCCceEEEEee
Q 046684 203 ESVCTRGMLYWITSARAYSVIGFDIESNTWRELS-A-----PM--ADR--LEFATLVSRNQKLTLIGGTCGGDACVWELS 272 (373)
Q Consensus 203 ~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~-~-----~~--p~~--~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~ 272 (373)
+++++|..=|+. |.....|.-.++.+.+---+. . +. |.. .--.+++++.+.=.++.|.....+.+|...
T Consensus 332 cv~~In~~Hfvs-GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 332 CVAFINDEHFVS-GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred eEEEecccceee-ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 456677666666 455666666666554321110 0 11 111 122356666676666666666778999998
Q ss_pred cCCCCCCeEEEEeechhhh
Q 046684 273 EGGDDDIWCLIEKVPIEMG 291 (373)
Q Consensus 273 ~~~~~~~W~~v~~~p~~~~ 291 (373)
+ .-..-..+..+|...+
T Consensus 411 ~--g~r~i~~l~~ls~~Gf 427 (479)
T KOG0299|consen 411 D--GLRAINLLYSLSLVGF 427 (479)
T ss_pred C--CccccceeeecccccE
Confidence 7 3346777777775544
No 175
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.77 E-value=59 Score=33.07 Aligned_cols=131 Identities=12% Similarity=0.075 Sum_probs=68.1
Q ss_pred eEEeeCcEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCC-----CCCeEEEEEcCCCC-------CCCCCceEEEE
Q 046684 89 PVSSIGSFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSR-----TNPAVGIVMEGPAQ-------HGPFPNFRIYV 154 (373)
Q Consensus 89 ~~~~~~g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~-----~~~~~~~~~~~~~~-------~~~~~~~kl~~ 154 (373)
.-...+|.||+... ...++.+|+.|++ |+.-+..+... .+..++....+... ....++.+||+
T Consensus 189 TPlvvgg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 189 TPLKVGDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL 265 (764)
T ss_pred CCEEECCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence 34567999999876 5688999999876 76654433211 11122222211100 00012256665
Q ss_pred EeccCCCCCCCCcccceEEEEECCCCc--eeeec--------CCCccccccceeccCCceEEECCEEEEEEc--------
Q 046684 155 AGGMSDEPRGGATYESMVEMYDSRHDA--WQIIG--------SMPVEFAVRLTVWTPNESVCTRGMLYWITS-------- 216 (373)
Q Consensus 155 ~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~--------~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg-------- 216 (373)
-. .+ ..+...|.+|++ |+--. .++.. .+.......+.++.+|.+++-+.
T Consensus 266 ~T-~D----------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~--~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~ 332 (764)
T TIGR03074 266 PT-SD----------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTT--PPGYYYPTSPPLVAGTTVVIGGRVADNYSTD 332 (764)
T ss_pred ec-CC----------CeEEEEECCCCCEEEEecCCCceeeecccCcC--CCcccccccCCEEECCEEEEEeccccccccc
Confidence 32 22 246667776655 54211 11110 00111233455778888887531
Q ss_pred CCceEEEEEECCCCc--EEec
Q 046684 217 ARAYSVIGFDIESNT--WREL 235 (373)
Q Consensus 217 ~~~~~i~~yd~~~~~--w~~~ 235 (373)
.....|.+||.++++ |+.-
T Consensus 333 ~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 333 EPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred CCCcEEEEEECCCCcEeeEEe
Confidence 114679999999874 6643
No 176
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.32 E-value=36 Score=29.92 Aligned_cols=75 Identities=8% Similarity=0.129 Sum_probs=45.1
Q ss_pred EEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCccc
Q 046684 257 LIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWE 336 (373)
Q Consensus 257 ~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~ 336 (373)
++.|.++..+.||++.. ++ +.+..+...... .-..+..|+.|..+-..+..+-.||+. .+ .
T Consensus 371 vVSgSDDrTvKvWdLrN----MR-splATIRtdS~~----------NRvavs~g~~iIAiPhDNRqvRlfDln--G~--R 431 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRN----MR-SPLATIRTDSPA----------NRVAVSKGHPIIAIPHDNRQVRLFDLN--GN--R 431 (481)
T ss_pred eeecCCCceEEEeeecc----cc-CcceeeecCCcc----------ceeEeecCCceEEeccCCceEEEEecC--CC--c
Confidence 44556666689999975 22 333333221110 234455677888888888899999998 66 5
Q ss_pred EEEecccccCCCCc
Q 046684 337 WVWVGGCCLTGGKQ 350 (373)
Q Consensus 337 W~~~~~~~~~~~~~ 350 (373)
--++|.....+++.
T Consensus 432 laRlPrtsRqgHrR 445 (481)
T KOG0300|consen 432 LARLPRTSRQGHRR 445 (481)
T ss_pred cccCCcccccccce
Confidence 44444444444443
No 177
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=81.10 E-value=19 Score=31.42 Aligned_cols=100 Identities=10% Similarity=0.117 Sum_probs=57.4
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe--
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK-- 285 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~-- 285 (373)
+|...+. |...+.+-.+|+++++-..+ .....+......+.....-+++.|.-+..+..|++.. . ..+..
T Consensus 83 dgskVf~-g~~Dk~~k~wDL~S~Q~~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~----~--~pv~t~~ 154 (347)
T KOG0647|consen 83 DGSKVFS-GGCDKQAKLWDLASGQVSQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS----S--NPVATLQ 154 (347)
T ss_pred CCceEEe-eccCCceEEEEccCCCeeee-eecccceeEEEEecCCCcceeEecccccceeecccCC----C--Ceeeeee
Confidence 3544444 35677888999999988888 3332332223333333333777776666689999864 2 23333
Q ss_pred echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
||.. ..+.....-+.+++-....|.+|+++
T Consensus 155 LPeR--------------vYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 155 LPER--------------VYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred ccce--------------eeehhccCceeEEEecCCcEEEEEcC
Confidence 4432 22333334455555555567778776
No 178
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=80.85 E-value=17 Score=30.96 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=33.7
Q ss_pred eEEECCEEEEEE-cC---Cc-eEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEee
Q 046684 204 SVCTRGMLYWIT-SA---RA-YSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGT 261 (373)
Q Consensus 204 ~~~~~g~ly~~g-g~---~~-~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~ 261 (373)
+-+.+|+||+.. |. .. ..+..=+...+.|+.+..|-..+....-.+..++.||++|..
T Consensus 196 vkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 196 VKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred hhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence 346899999997 21 22 345555666778998844433444444567789999999864
No 179
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=80.83 E-value=34 Score=29.05 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=82.4
Q ss_pred CCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCc---EEecccCC-----CCC---CCcee
Q 046684 179 HDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNT---WRELSAPM-----ADR---LEFAT 247 (373)
Q Consensus 179 ~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~---w~~~~~~~-----p~~---~~~~~ 247 (373)
.+.|...-.+| ....+..-++.+|.+|.-. .....|..||++++. +..++... |-. .....
T Consensus 55 ~~~~~~~~~lp-------~~~~gTg~VVynGs~yynk-~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD 126 (249)
T KOG3545|consen 55 RGRKAEKYRLP-------YSWDGTGHVVYNGSLYYNK-AGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDID 126 (249)
T ss_pred ccCcceEEeCC-------CCccccceEEEcceEEeec-cCCcceEEEEeecceeeeeeeccccccCCCcccccCCCcccc
Confidence 45566666664 2334555689999999984 456779999999853 34441111 000 11234
Q ss_pred EEEECCEEEEEEeecCCc--eEEEEeecC--CCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCC---
Q 046684 248 LVSRNQKLTLIGGTCGGD--ACVWELSEG--GDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVG--- 320 (373)
Q Consensus 248 ~~~~~g~l~~~gg~~~~~--~~i~~~~~~--~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 320 (373)
+++-..-|+++-...+.. +.+=+++.. .....|..- ++... ...++..=|.+|++....
T Consensus 127 ~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~k~~------------~~~aF~iCGvLY~v~S~~~~~ 192 (249)
T KOG3545|consen 127 LAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LPKRS------------AGNAFMICGVLYVVHSYNCTH 192 (249)
T ss_pred ceecccceeEEecccccCCcEEeeccCHHHhheeeeeccc--cCCCC------------cCceEEEeeeeEEEeccccCC
Confidence 555566677775544333 333444431 122344321 22211 244455556788886432
Q ss_pred ccE-EEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684 321 LGM-IIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS 364 (373)
Q Consensus 321 ~~~-~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~ 364 (373)
..| ..||.. ++ +=+ -..+|.+..-. ....+.|.|+
T Consensus 193 ~~i~yaydt~--~~--~~~-~~~ipf~N~y~----~~~~idYNP~ 228 (249)
T KOG3545|consen 193 TQISYAYDTT--TG--TQE-RIDLPFPNPYS----YATMIDYNPR 228 (249)
T ss_pred ceEEEEEEcC--CC--cee-cccccccchhh----hhhccCCCcc
Confidence 223 689999 88 543 23344444432 3445666664
No 180
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=80.34 E-value=38 Score=29.28 Aligned_cols=130 Identities=10% Similarity=0.086 Sum_probs=73.6
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEE--C-CEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSR--N-QKLTLIGGTCGGDACVWELSEGGDDDIWCLIE 284 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~--~-g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~ 284 (373)
++.-.+- |.+.+.|.-+|...+.=-.+..... +.-...+.. + ...+++.+..+..+.+|+++. -+...
T Consensus 116 dn~qivS-GSrDkTiklwnt~g~ck~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~ 186 (315)
T KOG0279|consen 116 DNRQIVS-GSRDKTIKLWNTLGVCKYTIHEDSH--REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRT 186 (315)
T ss_pred CCceeec-CCCcceeeeeeecccEEEEEecCCC--cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhh
Confidence 3444444 5667788888887776555522211 322222222 2 255666555555589999975 12222
Q ss_pred eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEeccc
Q 046684 285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPS 364 (373)
Q Consensus 285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~ 364 (373)
..+.. ........+..+|.++..||..+++..+|+. .+ +.+. ..... .....++|.|+
T Consensus 187 ~~~gh---------~~~v~t~~vSpDGslcasGgkdg~~~LwdL~--~~----k~ly---sl~a~----~~v~sl~fspn 244 (315)
T KOG0279|consen 187 TFIGH---------SGYVNTVTVSPDGSLCASGGKDGEAMLWDLN--EG----KNLY---SLEAF----DIVNSLCFSPN 244 (315)
T ss_pred ccccc---------cccEEEEEECCCCCEEecCCCCceEEEEEcc--CC----ceeE---eccCC----CeEeeEEecCC
Confidence 22221 1122455566699999999999999999999 66 2222 22222 13456778887
Q ss_pred ccce
Q 046684 365 LACA 368 (373)
Q Consensus 365 l~~~ 368 (373)
=..+
T Consensus 245 rywL 248 (315)
T KOG0279|consen 245 RYWL 248 (315)
T ss_pred ceeE
Confidence 4433
No 181
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=79.27 E-value=43 Score=29.31 Aligned_cols=131 Identities=8% Similarity=0.013 Sum_probs=64.9
Q ss_pred ceEEEEECCCCceeeecCCCccccccceeccCCce-EE--ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce
Q 046684 170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNES-VC--TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA 246 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~-~~--~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~ 246 (373)
..+.+||...++-...-..+ -++... .+ ..+.+..-.......|...++.+|+.-+. -+-...+..
T Consensus 36 Dsl~LYd~~~g~~~~ti~sk---------kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY-F~GH~~~V~- 104 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSK---------KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY-FPGHKKRVN- 104 (311)
T ss_pred CeEEEEEcCCCceeeEeecc---------cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE-cCCCCceEE-
Confidence 46899999888754443321 111111 11 12222211112245677778888877655 332222221
Q ss_pred eEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEE
Q 046684 247 TLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMII 325 (373)
Q Consensus 247 ~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 325 (373)
.+.+ -.+..++-+..+ ..+..|++.. .+=. .-|.... .+.++....|.|+.++.....|-.
T Consensus 105 sL~~sP~~d~FlS~S~D-~tvrLWDlR~----~~cq--g~l~~~~-----------~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 105 SLSVSPKDDTFLSSSLD-KTVRLWDLRV----KKCQ--GLLNLSG-----------RPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred EEEecCCCCeEEecccC-CeEEeeEecC----CCCc--eEEecCC-----------CcceeECCCCcEEEEecCCCeEEE
Confidence 2222 245666666544 3478999974 2111 1222211 024444456667776655556777
Q ss_pred EEcc
Q 046684 326 WRED 329 (373)
Q Consensus 326 yd~~ 329 (373)
||.+
T Consensus 167 yD~R 170 (311)
T KOG1446|consen 167 YDLR 170 (311)
T ss_pred EEec
Confidence 7766
No 182
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=79.20 E-value=48 Score=29.78 Aligned_cols=144 Identities=13% Similarity=0.165 Sum_probs=76.2
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCc-eEEECCEEEEEEcCCceEEEEEECC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNE-SVCTRGMLYWITSARAYSVIGFDIE 228 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~-~~~~~g~ly~~gg~~~~~i~~yd~~ 228 (373)
+.+.+-||-+ ...++++..++.|--. ++ .....-.. ...++|.+... |.-...+.+|...
T Consensus 76 ~~l~aTGGgD----------D~AflW~~~~ge~~~e--lt------gHKDSVt~~~FshdgtlLAT-GdmsG~v~v~~~s 136 (399)
T KOG0296|consen 76 NNLVATGGGD----------DLAFLWDISTGEFAGE--LT------GHKDSVTCCSFSHDGTLLAT-GDMSGKVLVFKVS 136 (399)
T ss_pred CceEEecCCC----------ceEEEEEccCCcceeE--ec------CCCCceEEEEEccCceEEEe-cCCCccEEEEEcc
Confidence 7788887655 3568888888885321 11 11111111 12345555555 5556778888877
Q ss_pred CC--cEEecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceE
Q 046684 229 SN--TWRELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTR 305 (373)
Q Consensus 229 ~~--~w~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~ 305 (373)
++ +|... .+. .. -..+.-. .+.++++|. .+..+-.|.... + .....|+...... ...
T Consensus 137 tg~~~~~~~-~e~--~d-ieWl~WHp~a~illAG~-~DGsvWmw~ip~----~--~~~kv~~Gh~~~c---------t~G 196 (399)
T KOG0296|consen 137 TGGEQWKLD-QEV--ED-IEWLKWHPRAHILLAGS-TDGSVWMWQIPS----Q--ALCKVMSGHNSPC---------TCG 196 (399)
T ss_pred cCceEEEee-ccc--Cc-eEEEEecccccEEEeec-CCCcEEEEECCC----c--ceeeEecCCCCCc---------ccc
Confidence 65 45433 111 10 0112222 345555554 444445666543 3 3333344322111 344
Q ss_pred EEecCCEEEEEEcCCccEEEEEccccCCc
Q 046684 306 CAAGNGAICLYREVGLGMIIWREDEDKRK 334 (373)
Q Consensus 306 ~~~~~~~i~~~~~~~~~~~~yd~~~~~~~ 334 (373)
.+..+|+-.+.+..++.+.++|++ +++
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~k--tg~ 223 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPK--TGQ 223 (399)
T ss_pred cccCCCceEEEEecCceEEEEecC--CCc
Confidence 555567777777777789999999 874
No 183
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=78.37 E-value=41 Score=28.60 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=37.0
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE--EEECCEEEEEEeecCCceEEEEeec
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL--VSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~--~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
+..+|+.| .....++.||..++.=... .. .....-... ..-+|.+|..|..++ .+.+|....
T Consensus 235 ~k~~fVaG-ged~~~~kfDy~TgeEi~~-~n-kgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt~~ 298 (334)
T KOG0278|consen 235 KKEFFVAG-GEDFKVYKFDYNTGEEIGS-YN-KGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQTTP 298 (334)
T ss_pred CCceEEec-CcceEEEEEeccCCceeee-cc-cCCCCceEEEEECCCCceeeccCCCc-eEEEEEecC
Confidence 44677775 4567789999887643322 00 111111122 233899999986554 479999875
No 184
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=77.64 E-value=37 Score=27.72 Aligned_cols=109 Identities=10% Similarity=0.001 Sum_probs=55.5
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccce---eccCCCCCCC--CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQF---RYLPLLNVSR--TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY 168 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w---~~lp~~~~~~--~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~ 168 (373)
+|.+|++-| +.++.||..+... +.+.....+. ....+++.... + +++|.+.|..
T Consensus 62 ~~~~yfFkg----~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~---~-----~~~yfFkg~~--------- 120 (194)
T cd00094 62 TGKIYFFKG----DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPD---N-----GKTYFFKGDK--------- 120 (194)
T ss_pred CCEEEEECC----CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcC---C-----CEEEEEeCCE---------
Confidence 388999987 6788998765222 1111111111 22223333210 1 7899997643
Q ss_pred cceEEEEECCCCceeeecCCCcccc--ccceeccCCceEEEC-CEEEEEEcCCceEEEEEECCCCc
Q 046684 169 ESMVEMYDSRHDAWQIIGSMPVEFA--VRLTVWTPNESVCTR-GMLYWITSARAYSVIGFDIESNT 231 (373)
Q Consensus 169 ~~~~~~yd~~~~~W~~~~~~p~~~~--~~~~~~~~~~~~~~~-g~ly~~gg~~~~~i~~yd~~~~~ 231 (373)
.+.||..+++-... .|.... -+..+..-.++...+ |++|++- ....+.||..+++
T Consensus 121 ---y~ry~~~~~~v~~~--yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~---g~~y~~~d~~~~~ 178 (194)
T cd00094 121 ---YWRYDEKTQKMDPG--YPKLIETDFPGVPDKVDAAFRWLDGYYYFFK---GDQYWRFDPRSKE 178 (194)
T ss_pred ---EEEEeCCCccccCC--CCcchhhcCCCcCCCcceeEEeCCCcEEEEE---CCEEEEEeCccce
Confidence 67887655443211 111000 001111112223344 8999994 3589999988776
No 185
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=77.52 E-value=74 Score=31.06 Aligned_cols=186 Identities=14% Similarity=0.096 Sum_probs=92.3
Q ss_pred ceEEEEEcCcccceeccCCCC--CCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc-e
Q 046684 106 ILQLVLCNPFTRQFRYLPLLN--VSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA-W 182 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~lp~~~--~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~-W 182 (373)
...+.+|||.. .|...+-++ ..+..-+++... + +++|-+|.....-.-+-......+.+|+..+. |
T Consensus 46 ~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e-~---------~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW 114 (691)
T KOG2048|consen 46 DGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAE-G---------GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW 114 (691)
T ss_pred CCcEEEEccCC-CceeeEEEecCCCCceeeEEEcc-C---------CeEEeecCCceEEEEecccCceeEEecCCCccee
Confidence 45789999998 565555443 444444555441 1 88999886431100011223445556665555 7
Q ss_pred eeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEE-EEEee
Q 046684 183 QIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLT-LIGGT 261 (373)
Q Consensus 183 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~-~~gg~ 261 (373)
........ .-.++-+.+|.+|.+-+ ..+...|+. .++......-.+..+.... +++|.
T Consensus 115 siai~p~~---------~~l~IgcddGvl~~~s~--~p~~I~~~r----------~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 115 SIAINPEN---------TILAIGCDDGVLYDFSI--GPDKITYKR----------SLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred EEEeCCcc---------ceEEeecCCceEEEEec--CCceEEEEe----------ecccccceEEEEEecCCccEEEecc
Confidence 65543210 11112234577776632 233444432 1111111112233445444 67776
Q ss_pred cCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 262 CGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 262 ~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.+.-+.+|+... ..=-.+..|...+..+..+.. .+.+....+...+.|...+.+..+|.+ ..
T Consensus 174 ~Dg~Iriwd~~~----~~t~~~~~~~~d~l~k~~~~i----VWSv~~Lrd~tI~sgDS~G~V~FWd~~--~g 235 (691)
T KOG2048|consen 174 IDGVIRIWDVKS----GQTLHIITMQLDRLSKREPTI----VWSVLFLRDSTIASGDSAGTVTFWDSI--FG 235 (691)
T ss_pred cCceEEEEEcCC----CceEEEeeecccccccCCceE----EEEEEEeecCcEEEecCCceEEEEccc--Cc
Confidence 666688999865 322224444444333211111 234444455556666666778888887 66
No 186
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=76.76 E-value=51 Score=28.84 Aligned_cols=99 Identities=9% Similarity=0.144 Sum_probs=53.7
Q ss_pred EEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh
Q 046684 212 YWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG 291 (373)
Q Consensus 212 y~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~ 291 (373)
.++.|...+.|..||+.+.+=..+ .....+. ..+.-.-+.=.++.|.-+..+.+|++.. . ..+.....+.
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~~~~i-gth~~~i--~ci~~~~~~~~vIsgsWD~~ik~wD~R~----~--~~~~~~d~~k- 136 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGNEDQI-GTHDEGI--RCIEYSYEVGCVISGSWDKTIKFWDPRN----K--VVVGTFDQGK- 136 (323)
T ss_pred eEEEeccCceEEEEEecCCcceee-ccCCCce--EEEEeeccCCeEEEcccCccEEEEeccc----c--ccccccccCc-
Confidence 333355678899999998876666 2221111 1122222222333344444579999863 1 1111111111
Q ss_pred hhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 292 MRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
...+....+.++++|.....+++||++ ..
T Consensus 137 -----------kVy~~~v~g~~LvVg~~~r~v~iyDLR--n~ 165 (323)
T KOG1036|consen 137 -----------KVYCMDVSGNRLVVGTSDRKVLIYDLR--NL 165 (323)
T ss_pred -----------eEEEEeccCCEEEEeecCceEEEEEcc--cc
Confidence 144555556666667777789999998 65
No 187
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=76.59 E-value=66 Score=30.02 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=17.9
Q ss_pred cCCEEEEEEcCCccEEEEEccccCC
Q 046684 309 GNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 309 ~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.++..++.|...+.+..||-+ +-
T Consensus 442 pDG~~l~SGdsdG~v~~wdwk--t~ 464 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWK--TT 464 (503)
T ss_pred CCCCeEEeecCCccEEEeech--hh
Confidence 466667777778899999998 65
No 188
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.46 E-value=94 Score=31.73 Aligned_cols=149 Identities=11% Similarity=0.086 Sum_probs=76.1
Q ss_pred cceEEEEECCCCceeeecCCCccccccceeccCCceEEECC-EEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684 169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRG-MLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT 247 (373)
Q Consensus 169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g-~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~ 247 (373)
...+|.++ +|+.|..=..-. ...+.+++.+.+ .=.++.......|-++|....+=-.. ..... ..+.
T Consensus 229 qVKlWrmn-etKaWEvDtcrg--------H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t-frren--dRFW 296 (1202)
T KOG0292|consen 229 QVKLWRMN-ETKAWEVDTCRG--------HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT-FRREN--DRFW 296 (1202)
T ss_pred eeeEEEec-cccceeehhhhc--------ccCCcceEEecCccceeEecCCCccEEEEecccccceee-eeccC--CeEE
Confidence 45566664 477887433221 112233344443 22233234467788899876643322 11112 2233
Q ss_pred EEEEC--CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEE
Q 046684 248 LVSRN--QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMII 325 (373)
Q Consensus 248 ~~~~~--g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 325 (373)
+.+.. ..||..|. +..+.+|.++. + ..+.+.++|.+|.+.+ ..+..
T Consensus 297 ~laahP~lNLfAAgH--DsGm~VFkleR---------------E-------------rpa~~v~~n~LfYvkd--~~i~~ 344 (1202)
T KOG0292|consen 297 ILAAHPELNLFAAGH--DSGMIVFKLER---------------E-------------RPAYAVNGNGLFYVKD--RFIRS 344 (1202)
T ss_pred EEEecCCcceeeeec--CCceEEEEEcc---------------c-------------CceEEEcCCEEEEEcc--ceEEe
Confidence 44443 45555553 33477888753 1 2555677777777763 46999
Q ss_pred EEccccCCcccEEEecccccCCCCcccccceeEEEecccccce
Q 046684 326 WREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACA 368 (373)
Q Consensus 326 yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~ 368 (373)
||+. +. +.++.+++...-. -.......+|.|.-.+.
T Consensus 345 ~d~~--t~----~d~~v~~lr~~g~-~~~~~~smsYNpae~~v 380 (1202)
T KOG0292|consen 345 YDLR--TQ----KDTAVASLRRPGT-LWQPPRSLSYNPAENAV 380 (1202)
T ss_pred eecc--cc----ccceeEeccCCCc-ccCCcceeeeccccCeE
Confidence 9999 65 2233333222210 01234457888875543
No 189
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.09 E-value=81 Score=30.77 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=32.1
Q ss_pred CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee-EEEE-CCEEEEEEeecCCceEEEEeec
Q 046684 209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT-LVSR-NQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~-~~~~-~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
|.+.+- |...+.+..||+.+.+=.. .+-.+..... +.+. +|.-.+.++ .+..+.+|++..
T Consensus 183 ~t~ivs-Ggtek~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgq 244 (735)
T KOG0308|consen 183 GTIIVS-GGTEKDLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQ 244 (735)
T ss_pred ceEEEe-cCcccceEEecccccccee---eeeccccceEEEEEcCCCCeEeecC-CCceEEeeeccc
Confidence 445554 5678899999998764321 1223333332 2222 444444443 333478888754
No 190
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=75.28 E-value=49 Score=31.11 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=59.2
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES 229 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~ 229 (373)
++-.++||.- ..+-++|..+-+=+....++. ....+..-.+..+.++.+.. -....|.++|+.+
T Consensus 477 grtLivGGea----------stlsiWDLAapTprikaelts-----sapaCyALa~spDakvcFsc-csdGnI~vwDLhn 540 (705)
T KOG0639|consen 477 GRTLIVGGEA----------STLSIWDLAAPTPRIKAELTS-----SAPACYALAISPDAKVCFSC-CSDGNIAVWDLHN 540 (705)
T ss_pred CceEEecccc----------ceeeeeeccCCCcchhhhcCC-----cchhhhhhhcCCccceeeee-ccCCcEEEEEccc
Confidence 6667778753 567888887766554444432 11122222344566666653 3456799999998
Q ss_pred CcEEecccCCCCCCCceeEEEE--CCEEEEEEeecCCceEEEEeec
Q 046684 230 NTWRELSAPMADRLEFATLVSR--NQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 230 ~~w~~~~~~~p~~~~~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
++-. ..++....+.....+ +|.-...||-+. .+..|++.+
T Consensus 541 q~~V---rqfqGhtDGascIdis~dGtklWTGGlDn-tvRcWDlre 582 (705)
T KOG0639|consen 541 QTLV---RQFQGHTDGASCIDISKDGTKLWTGGLDN-TVRCWDLRE 582 (705)
T ss_pred ceee---ecccCCCCCceeEEecCCCceeecCCCcc-ceeehhhhh
Confidence 7543 234444444443333 355555555443 368898866
No 191
>PRK13684 Ycf48-like protein; Provisional
Probab=74.68 E-value=65 Score=29.03 Aligned_cols=134 Identities=10% Similarity=0.106 Sum_probs=61.9
Q ss_pred CCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEE-EECCCCcEEecccCCCCCCCceeEEE-ECCEE
Q 046684 178 RHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIG-FDIESNTWRELSAPMADRLEFATLVS-RNQKL 255 (373)
Q Consensus 178 ~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~-yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l 255 (373)
..++|+.+..... . ....+....+..+++.+. ...++. .|-..++|+.+. .+....-..++. -++++
T Consensus 160 gG~tW~~~~~~~~-------g-~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~--~~~~~~l~~i~~~~~g~~ 228 (334)
T PRK13684 160 GGKNWEALVEDAA-------G-VVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ--RNSSRRLQSMGFQPDGNL 228 (334)
T ss_pred CCCCceeCcCCCc-------c-eEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee--CCCcccceeeeEcCCCCE
Confidence 3568998765321 0 111222233333444333 233333 345556899883 232222233333 36788
Q ss_pred EEEEeecCCceEEEEeecCCCCCCeEEEEeechh-hhhhhcCCCCCCCceEEE-ecCCEEEEEEcCCccEEEEEccccCC
Q 046684 256 TLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIE-MGMRLSGGKASWGGTRCA-AGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 256 ~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~-~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
++++.. + ..+..-.+ ...+|+.+. .|.. .... ...+. ..++.+++.+.. +.++.-.-. -.
T Consensus 229 ~~vg~~-G--~~~~~s~d--~G~sW~~~~-~~~~~~~~~---------l~~v~~~~~~~~~~~G~~-G~v~~S~d~--G~ 290 (334)
T PRK13684 229 WMLARG-G--QIRFNDPD--DLESWSKPI-IPEITNGYG---------YLDLAYRTPGEIWAGGGN-GTLLVSKDG--GK 290 (334)
T ss_pred EEEecC-C--EEEEccCC--CCCcccccc-CCccccccc---------eeeEEEcCCCCEEEEcCC-CeEEEeCCC--CC
Confidence 887643 2 12222233 557899753 2311 1100 12222 335678877654 234333333 46
Q ss_pred cccEEEecc
Q 046684 334 KWEWVWVGG 342 (373)
Q Consensus 334 ~~~W~~~~~ 342 (373)
+|+.++.
T Consensus 291 --tW~~~~~ 297 (334)
T PRK13684 291 --TWEKDPV 297 (334)
T ss_pred --CCeECCc
Confidence 8987753
No 192
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=74.54 E-value=79 Score=29.94 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=67.3
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCC-------CCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCe
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPM-------ADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIW 280 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~-------p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W 280 (373)
+|++ +.+|-..++|..+|. ..|..- ..+ +......-....+|...+.-|.++ .+.+|++... .+.-
T Consensus 328 dg~~-iAagc~DGSIQ~W~~--~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-tLKvWDLrq~--kkpL 400 (641)
T KOG0772|consen 328 DGKL-IAAGCLDGSIQIWDK--GSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-TLKVWDLRQF--KKPL 400 (641)
T ss_pred Ccch-hhhcccCCceeeeec--CCcccc-cceEeeeccCCCCceeEEEeccccchhhhccCCC-ceeeeecccc--ccch
Confidence 4666 333555677888876 333322 111 111122223344777666655443 3799999761 1111
Q ss_pred EEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc------CCccEEEEEccccCCcccEEEecccccCCCCccccc
Q 046684 281 CLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE------VGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNV 354 (373)
Q Consensus 281 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~ 354 (373)
.....++... . ..-+|+.-+++|.+.|. ..+.++.||.. +...+..++.+..
T Consensus 401 ~~~tgL~t~~-~---------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~------t~d~v~ki~i~~a------ 458 (641)
T KOG0772|consen 401 NVRTGLPTPF-P---------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM------TLDTVYKIDISTA------ 458 (641)
T ss_pred hhhcCCCccC-C---------CCccccCCCceEEEecccccCCCCCceEEEEecc------ceeeEEEecCCCc------
Confidence 1111222211 1 13456667899999873 23568999988 4466666655533
Q ss_pred ceeEEEecccc
Q 046684 355 PMRGVLLHPSL 365 (373)
Q Consensus 355 ~~~~~~~~p~l 365 (373)
....+...|+|
T Consensus 459 Svv~~~WhpkL 469 (641)
T KOG0772|consen 459 SVVRCLWHPKL 469 (641)
T ss_pred eEEEEeecchh
Confidence 23445566654
No 193
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=74.07 E-value=47 Score=29.33 Aligned_cols=100 Identities=11% Similarity=0.180 Sum_probs=63.5
Q ss_pred eEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEE
Q 046684 247 TLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIW 326 (373)
Q Consensus 247 ~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~y 326 (373)
.+...++..|++....++.+.+|.++- ..+..+....... ..+.+..+|+.....+.+.++.++
T Consensus 192 ~iGiA~~~k~imsas~dt~i~lw~lkG-------q~L~~idtnq~~n---------~~aavSP~GRFia~~gFTpDVkVw 255 (420)
T KOG2096|consen 192 NIGIAGNAKYIMSASLDTKICLWDLKG-------QLLQSIDTNQSSN---------YDAAVSPDGRFIAVSGFTPDVKVW 255 (420)
T ss_pred EEeecCCceEEEEecCCCcEEEEecCC-------ceeeeeccccccc---------cceeeCCCCcEEEEecCCCCceEE
Confidence 456668888999888888899999974 3344444332221 355566678888878887777776
Q ss_pred Ecccc-CCcccEEEe-cccccCCCCcccccceeEEEecccccce
Q 046684 327 REDED-KRKWEWVWV-GGCCLTGGKQVQNVPMRGVLLHPSLACA 368 (373)
Q Consensus 327 d~~~~-~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~p~l~~~ 368 (373)
.+--+ .+ +..++ ....+.++.. ...+++|.|+-.-.
T Consensus 256 E~~f~kdG--~fqev~rvf~LkGH~s----aV~~~aFsn~S~r~ 293 (420)
T KOG2096|consen 256 EPIFTKDG--TFQEVKRVFSLKGHQS----AVLAAAFSNSSTRA 293 (420)
T ss_pred EEEeccCc--chhhhhhhheeccchh----heeeeeeCCCccee
Confidence 65311 23 34433 3345667654 67788888875443
No 194
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.85 E-value=13 Score=30.58 Aligned_cols=84 Identities=13% Similarity=0.006 Sum_probs=56.2
Q ss_pred ceeEEEECCEEEEEEeecCC-ceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccE
Q 046684 245 FATLVSRNQKLTLIGGTCGG-DACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGM 323 (373)
Q Consensus 245 ~~~~~~~~g~l~~~gg~~~~-~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 323 (373)
..++...+|+|+...|.-+. .+.+|++.. ....|+.--. |...+ +-.+...+|.+|..--..+..
T Consensus 48 TQGL~~~~g~i~esTG~yg~S~ir~~~L~~--gq~~~s~~l~-~~~~F-----------gEGit~~gd~~y~LTw~egva 113 (262)
T COG3823 48 TQGLEYLDGHILESTGLYGFSKIRVSDLTT--GQEIFSEKLA-PDTVF-----------GEGITKLGDYFYQLTWKEGVA 113 (262)
T ss_pred hcceeeeCCEEEEeccccccceeEEEeccC--ceEEEEeecC-Ccccc-----------ccceeeccceEEEEEecccee
Confidence 34677889999888775444 488888875 3344554322 23333 356677899999998888889
Q ss_pred EEEEccccCCcccEEEecccccCCC
Q 046684 324 IIWREDEDKRKWEWVWVGGCCLTGG 348 (373)
Q Consensus 324 ~~yd~~~~~~~~~W~~~~~~~~~~~ 348 (373)
+.||++ +- +.+...+..+.
T Consensus 114 f~~d~~--t~----~~lg~~~y~Ge 132 (262)
T COG3823 114 FKYDAD--TL----EELGRFSYEGE 132 (262)
T ss_pred EEEChH--Hh----hhhcccccCCc
Confidence 999998 44 55555555443
No 195
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=73.64 E-value=92 Score=30.26 Aligned_cols=182 Identities=11% Similarity=0.012 Sum_probs=93.2
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
+++++.... ...+.+||..+++....=.- ..-++..+.. ...+..+|.. ...+.
T Consensus 261 ~~~lvsgS~---D~t~rvWd~~sg~C~~~l~g----h~stv~~~~~----------~~~~~~sgs~---------D~tVk 314 (537)
T KOG0274|consen 261 GDKLVSGST---DKTERVWDCSTGECTHSLQG----HTSSVRCLTI----------DPFLLVSGSR---------DNTVK 314 (537)
T ss_pred CCEEEEEec---CCcEEeEecCCCcEEEEecC----CCceEEEEEc----------cCceEeeccC---------CceEE
Confidence 554444333 57789999988887653221 1111222221 3334444332 35788
Q ss_pred EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECC
Q 046684 174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQ 253 (373)
Q Consensus 174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g 253 (373)
+++..+++--.+-.- .......+.+++.+.+.| .....|-++|+.+.+.-.. +..+........+++
T Consensus 315 VW~v~n~~~l~l~~~---------h~~~V~~v~~~~~~lvsg-s~d~~v~VW~~~~~~cl~s---l~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRG---------HTGPVNCVQLDEPLLVSG-SYDGTVKVWDPRTGKCLKS---LSGHTGRVYSLIVDS 381 (537)
T ss_pred EEeccCcceEEEecc---------ccccEEEEEecCCEEEEE-ecCceEEEEEhhhceeeee---ecCCcceEEEEEecC
Confidence 888876553322210 011122355666666664 4455899999996655433 222222222335566
Q ss_pred -EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccC
Q 046684 254 -KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDK 332 (373)
Q Consensus 254 -~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~ 332 (373)
..++-|..+ ..+++|++.. .. ..+..+..... -.......+.+++-+...+.|-++|.+ +
T Consensus 382 ~~~~~Sgs~D-~~IkvWdl~~----~~-~c~~tl~~h~~-----------~v~~l~~~~~~Lvs~~aD~~Ik~WD~~--~ 442 (537)
T KOG0274|consen 382 ENRLLSGSLD-TTIKVWDLRT----KR-KCIHTLQGHTS-----------LVSSLLLRDNFLVSSSADGTIKLWDAE--E 442 (537)
T ss_pred cceEEeeeec-cceEeecCCc----hh-hhhhhhcCCcc-----------cccccccccceeEeccccccEEEeecc--c
Confidence 444444444 5689999975 32 12222111110 011122345666666666778888888 7
Q ss_pred C
Q 046684 333 R 333 (373)
Q Consensus 333 ~ 333 (373)
+
T Consensus 443 ~ 443 (537)
T KOG0274|consen 443 G 443 (537)
T ss_pred C
Confidence 6
No 196
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=72.46 E-value=86 Score=29.41 Aligned_cols=120 Identities=17% Similarity=0.067 Sum_probs=71.2
Q ss_pred CceEEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCC
Q 046684 50 PAWFLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSR 129 (373)
Q Consensus 50 ~~~l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~ 129 (373)
...+++...++....++++|...+.-.++.........-+.+.-|..|++.....+..+++++|+..++-+++-.-....
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~ 328 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN 328 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC
Confidence 34566666666668899999888775555443333333345555666776665555679999999998876654322222
Q ss_pred CCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc-eeeecCC
Q 046684 130 TNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA-WQIIGSM 188 (373)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~ 188 (373)
..+. .+++++.+++-+.. ... ..+..+|..++. |+.+..-
T Consensus 329 ~~p~------------~SpdG~~i~~~~~~-----~g~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 329 SNPV------------WSPDGDKIVFESSS-----GGQ--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred cCcc------------CCCCCCEEEEEecc-----CCc--eeeEEeccCCCCcEEEcccc
Confidence 2111 11224444443322 111 678999998877 9887654
No 197
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=72.43 E-value=89 Score=29.59 Aligned_cols=148 Identities=12% Similarity=0.096 Sum_probs=71.7
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceec-cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRY-LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~ 172 (373)
.|.+++.|+. ...+.+||..+++-.+ ++.... .+..+... .++.+++.+..+ ..+
T Consensus 257 ~g~~i~Sgs~--D~tvriWd~~~~~~~~~l~~hs~-----~is~~~f~-------~d~~~l~s~s~d----------~~i 312 (456)
T KOG0266|consen 257 DGNLLVSGSD--DGTVRIWDVRTGECVRKLKGHSD-----GISGLAFS-------PDGNLLVSASYD----------GTI 312 (456)
T ss_pred CCCEEEEecC--CCcEEEEeccCCeEEEeeeccCC-----ceEEEEEC-------CCCCEEEEcCCC----------ccE
Confidence 4444444433 5789999999965433 232222 11111111 115566666443 578
Q ss_pred EEEECCCCcee---eecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCC-CCceeE
Q 046684 173 EMYDSRHDAWQ---IIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADR-LEFATL 248 (373)
Q Consensus 173 ~~yd~~~~~W~---~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~-~~~~~~ 248 (373)
.+||..++.-+ .+.... .......+.+..+-.|++.+.....+..+|+.+..-...-...... +.....
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAE-------NSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred EEEECCCCceeeeecccCCC-------CCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 99999887743 222221 1101122233344455554555557777787765433221122221 111122
Q ss_pred E-EECCEEEEEEeecCCceEEEEeec
Q 046684 249 V-SRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 249 ~-~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
+ ..+++..+. |..+..+.+|++..
T Consensus 386 ~~~~~~~~i~s-g~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 386 TLSTGGKLIYS-GSEDGSVYVWDSSS 410 (456)
T ss_pred cccCCCCeEEE-EeCCceEEEEeCCc
Confidence 2 224554444 45555688998864
No 198
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.28 E-value=60 Score=27.58 Aligned_cols=73 Identities=19% Similarity=0.337 Sum_probs=42.3
Q ss_pred CEEEEEEeecCCceEEEEeecCCCCCCeEEE--EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccc
Q 046684 253 QKLTLIGGTCGGDACVWELSEGGDDDIWCLI--EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDE 330 (373)
Q Consensus 253 g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~ 330 (373)
.+-+++.+..+..+-||.-+. +.+.|+.. .+.|....+ ......|+ ++.+++.++++.++-...
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~--e~e~wk~tll~~f~~~~w~-----------vSWS~sGn-~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDE--EYEPWKKTLLEEFPDVVWR-----------VSWSLSGN-ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CceeeEEecCCCcEEEEEecC--ccCcccccccccCCcceEE-----------EEEecccc-EEEEecCCcEEEEEEeCC
Confidence 344566555555577888876 77889753 334443322 33333444 444455556777776553
Q ss_pred cCCcccEEEecc
Q 046684 331 DKRKWEWVWVGG 342 (373)
Q Consensus 331 ~~~~~~W~~~~~ 342 (373)
.+ +|..+..
T Consensus 288 -~G--kw~~v~~ 296 (299)
T KOG1332|consen 288 -DG--KWEEVGE 296 (299)
T ss_pred -CC--cEEEccc
Confidence 57 7887653
No 199
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=71.56 E-value=1.3e+02 Score=31.12 Aligned_cols=151 Identities=9% Similarity=-0.019 Sum_probs=71.5
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCC-CceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRH-DAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIE 228 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~ 228 (373)
++.|++|-....+.........+.+|.... ++=+.++.+- ..-...+.+.+||++..- -...+..|+..
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-------v~Gav~aL~~fngkllA~---In~~vrLye~t 856 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-------VKGAVYALVEFNGKLLAG---INQSVRLYEWT 856 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-------eccceeehhhhCCeEEEe---cCcEEEEEEcc
Confidence 667777743222221222223445554433 5656655541 111122334567776654 23567778776
Q ss_pred CCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe
Q 046684 229 SNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA 308 (373)
Q Consensus 229 ~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 308 (373)
+++=-.+......+.....+-+.+++|++..-...-.+..|+.++ +....++.--.+.. ..++..
T Consensus 857 ~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e----g~f~evArD~~p~W-----------mtavei 921 (1096)
T KOG1897|consen 857 TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE----GNFEEVARDYNPNW-----------MTAVEI 921 (1096)
T ss_pred ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC----CceEEeehhhCccc-----------eeeEEE
Confidence 662211111111222233455567888776554433344454433 55777665333332 244444
Q ss_pred cCCEEEEEEcCCccEEE
Q 046684 309 GNGAICLYREVGLGMII 325 (373)
Q Consensus 309 ~~~~i~~~~~~~~~~~~ 325 (373)
.++..|+.....++++.
T Consensus 922 l~~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 922 LDDDTYLGAENSGNLFT 938 (1096)
T ss_pred ecCceEEeecccccEEE
Confidence 56666665555444333
No 200
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.87 E-value=8.3 Score=20.70 Aligned_cols=27 Identities=7% Similarity=0.233 Sum_probs=19.7
Q ss_pred cCCEEEEEEcCCccEEEEEccccCCcccEE
Q 046684 309 GNGAICLYREVGLGMIIWREDEDKRKWEWV 338 (373)
Q Consensus 309 ~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~ 338 (373)
.++.+|+ +...+.++.+|.+ +++..|+
T Consensus 5 ~~~~v~~-~~~~g~l~a~d~~--~G~~~W~ 31 (33)
T smart00564 5 SDGTVYV-GSTDGTLYALDAK--TGEILWT 31 (33)
T ss_pred ECCEEEE-EcCCCEEEEEEcc--cCcEEEE
Confidence 3456665 4556789999999 8877776
No 201
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.60 E-value=91 Score=28.94 Aligned_cols=96 Identities=8% Similarity=0.049 Sum_probs=49.8
Q ss_pred ECCEEEEEEcCCceEEEEEECCCC-----cEEecccCCCCCCC-ceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCC
Q 046684 207 TRGMLYWITSARAYSVIGFDIESN-----TWRELSAPMADRLE-FATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDI 279 (373)
Q Consensus 207 ~~g~ly~~gg~~~~~i~~yd~~~~-----~w~~~~~~~p~~~~-~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~ 279 (373)
.+|.+++++ . ...+..-+-... +|..+ +.+.... -..+.. -++.++++|... .++...+ ..++
T Consensus 290 ~dg~l~l~g-~-~G~l~~S~d~G~~~~~~~f~~~--~~~~~~~~l~~v~~~~d~~~~a~G~~G----~v~~s~D--~G~t 359 (398)
T PLN00033 290 ADGGLWLLT-R-GGGLYVSKGTGLTEEDFDFEEA--DIKSRGFGILDVGYRSKKEAWAAGGSG----ILLRSTD--GGKS 359 (398)
T ss_pred CCCCEEEEe-C-CceEEEecCCCCcccccceeec--ccCCCCcceEEEEEcCCCcEEEEECCC----cEEEeCC--CCcc
Confidence 468888875 2 234444343444 44544 2221111 122222 366787777543 4666665 6789
Q ss_pred eEEEEe---echhhhhhhcCCCCCCCceEEE-ecCCEEEEEEcCCccEEEE
Q 046684 280 WCLIEK---VPIEMGMRLSGGKASWGGTRCA-AGNGAICLYREVGLGMIIW 326 (373)
Q Consensus 280 W~~v~~---~p~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~y 326 (373)
|+++.. ++... +.+. ..+++.|+.|.. +.++.|
T Consensus 360 W~~~~~~~~~~~~l-------------y~v~f~~~~~g~~~G~~-G~il~~ 396 (398)
T PLN00033 360 WKRDKGADNIAANL-------------YSVKFFDDKKGFVLGND-GVLLRY 396 (398)
T ss_pred eeEccccCCCCcce-------------eEEEEcCCCceEEEeCC-cEEEEe
Confidence 999753 22222 2333 445788887643 345555
No 202
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=69.86 E-value=1.2e+02 Score=30.19 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=50.5
Q ss_pred eEEEEECCCCc-eeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684 171 MVEMYDSRHDA-WQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV 249 (373)
Q Consensus 171 ~~~~yd~~~~~-W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~ 249 (373)
.+.+++..+.+ =+.+... +..+..++.|-.|++-|...+.+..||..+..--.. .+-...-...-..
T Consensus 395 SikiWn~~t~kciRTi~~~-----------y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et-i~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITCG-----------YILASKFVPGDRYIVLGTKNGELQVFDLASASLVET-IRAHDGAIWSISL 462 (888)
T ss_pred cEEEEEccCcceeEEeccc-----------cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh-hhccccceeeeee
Confidence 46677665433 3333321 445557788888888888889999999987544332 1211111111112
Q ss_pred EECCEEEEEEeecCCceEEEEeec
Q 046684 250 SRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 250 ~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
..+++=++.++ .+..+.+|++..
T Consensus 463 ~pD~~g~vT~s-aDktVkfWdf~l 485 (888)
T KOG0306|consen 463 SPDNKGFVTGS-ADKTVKFWDFKL 485 (888)
T ss_pred cCCCCceEEec-CCcEEEEEeEEE
Confidence 23555555554 334478888765
No 203
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.75 E-value=72 Score=27.45 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=52.6
Q ss_pred cEEEEeeCCCCceEEEEEcCcccc--eeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684 95 SFLLLRPINSTILQLVLCNPFTRQ--FRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172 (373)
Q Consensus 95 g~l~~~gg~~~~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~ 172 (373)
-++++... ...+...||.++. |+.+ +.. |......+++ ..+++|.++ ..+
T Consensus 24 T~v~igSH---s~~~~avd~~sG~~~We~i--lg~-RiE~sa~vvg------------dfVV~GCy~----------g~l 75 (354)
T KOG4649|consen 24 TLVVIGSH---SGIVIAVDPQSGNLIWEAI--LGV-RIECSAIVVG------------DFVVLGCYS----------GGL 75 (354)
T ss_pred eEEEEecC---CceEEEecCCCCcEEeehh--hCc-eeeeeeEEEC------------CEEEEEEcc----------CcE
Confidence 44555443 5678888999987 6543 322 3323333343 347778765 356
Q ss_pred EEEECCCC--ceeeecCCCccccccceeccCCceEEEC-CEEEEEEcCCceEEEEEECCCCc
Q 046684 173 EMYDSRHD--AWQIIGSMPVEFAVRLTVWTPNESVCTR-GMLYWITSARAYSVIGFDIESNT 231 (373)
Q Consensus 173 ~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~-g~ly~~gg~~~~~i~~yd~~~~~ 231 (373)
+..+..|+ -|.-...-. ....+.+-.+ |.+|+- ......++.|+.+..
T Consensus 76 Yfl~~~tGs~~w~f~~~~~---------vk~~a~~d~~~glIycg--shd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILET---------VKVRAQCDFDGGLIYCG--SHDGNFYALDPKTYG 126 (354)
T ss_pred EEEEecchhheeeeeehhh---------hccceEEcCCCceEEEe--cCCCcEEEecccccc
Confidence 77777776 376443211 1111222233 445443 445667888887653
No 204
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=69.75 E-value=17 Score=20.54 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=21.0
Q ss_pred CEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684 311 GAICLYREVGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 311 ~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
|.||+- ...+.++.+|.+ +++..|+.-..
T Consensus 1 ~~v~~~-~~~g~l~AlD~~--TG~~~W~~~~~ 29 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAK--TGKVLWKFQTG 29 (38)
T ss_dssp TEEEEE-TTTSEEEEEETT--TTSEEEEEESS
T ss_pred CEEEEe-CCCCEEEEEECC--CCCEEEeeeCC
Confidence 345654 666789999999 88888886544
No 205
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=69.33 E-value=2.2 Score=37.68 Aligned_cols=38 Identities=18% Similarity=0.539 Sum_probs=32.3
Q ss_pred CCCcchHHHHHHHHhcCC--------hhhHHHhhcccccchhcccc
Q 046684 1 MWSNLHLDVLANIFSFLS--------PDSLARAKSVCSHWHTCAKL 38 (373)
Q Consensus 1 ~~~~Lp~dll~~Il~rLP--------~~~l~r~r~Vck~W~~li~~ 38 (373)
+|++||.++|.+|+.|.- -++++.+..||+.|+.+..+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 589999999999999985 23688999999999997753
No 206
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=68.40 E-value=1e+02 Score=28.63 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=53.9
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeE--EEEe
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWC--LIEK 285 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~--~v~~ 285 (373)
+|.+++++ ..-.-+...|.-...|+.+..+.+.... ......+|.+++++... .++.-++ ....|+ ....
T Consensus 249 dG~~~~vg-~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l~l~g~~G----~l~~S~d--~G~~~~~~~f~~ 320 (398)
T PLN00033 249 DGDYVAVS-SRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGLWLLTRGG----GLYVSKG--TGLTEEDFDFEE 320 (398)
T ss_pred CCCEEEEE-CCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCEEEEeCCc----eEEEecC--CCCcccccceee
Confidence 34555553 2222233344444458988433333221 12233578888877432 3444443 445554 2333
Q ss_pred echhhhhhhcCCCCCCCceEE-EecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684 286 VPIEMGMRLSGGKASWGGTRC-AAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 286 ~p~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
++...... ....+ ...++.+++.|.. +.++.=.-. -+ +|+.++.
T Consensus 321 ~~~~~~~~--------~l~~v~~~~d~~~~a~G~~-G~v~~s~D~--G~--tW~~~~~ 365 (398)
T PLN00033 321 ADIKSRGF--------GILDVGYRSKKEAWAAGGS-GILLRSTDG--GK--SWKRDKG 365 (398)
T ss_pred cccCCCCc--------ceEEEEEcCCCcEEEEECC-CcEEEeCCC--Cc--ceeEccc
Confidence 33221000 01223 3346778877654 344444555 67 8998763
No 207
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.34 E-value=46 Score=27.60 Aligned_cols=105 Identities=9% Similarity=0.003 Sum_probs=62.0
Q ss_pred eEEECCEEEEEEcCC-ceEEEEEECCCC--cEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCe
Q 046684 204 SVCTRGMLYWITSAR-AYSVIGFDIESN--TWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIW 280 (373)
Q Consensus 204 ~~~~~g~ly~~gg~~-~~~i~~yd~~~~--~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W 280 (373)
....+|+++.-.|.. ..+|..+|+.++ .|++- .+ |....+-+++..++.+|.+.-.++. -+..+. ++.
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~-l~-~~~~FgEGit~~gd~~y~LTw~egv---af~~d~----~t~ 121 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEK-LA-PDTVFGEGITKLGDYFYQLTWKEGV---AFKYDA----DTL 121 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEee-cC-CccccccceeeccceEEEEEeccce---eEEECh----HHh
Confidence 356778777766543 567999999955 45544 33 3444566889999999998754432 333333 445
Q ss_pred EEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 281 CLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 281 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
+.+...+.+.- +++....+..|.+.+|. .-+..-||+
T Consensus 122 ~~lg~~~y~Ge-----------GWgLt~d~~~LimsdGs-atL~frdP~ 158 (262)
T COG3823 122 EELGRFSYEGE-----------GWGLTSDDKNLIMSDGS-ATLQFRDPK 158 (262)
T ss_pred hhhcccccCCc-----------ceeeecCCcceEeeCCc-eEEEecCHH
Confidence 55555444321 46666666665544333 245555655
No 208
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=67.46 E-value=87 Score=27.51 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=63.8
Q ss_pred ceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEE--EEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684 170 SMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGML--YWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT 247 (373)
Q Consensus 170 ~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~l--y~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~ 247 (373)
..+.+||..+++=..+..-. .....+-.+++.. .++.|...+.+--.|+....=-.. ..+|...+ .
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd---------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t-~~LPeRvY--a 161 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHD---------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT-LQLPERVY--A 161 (347)
T ss_pred CceEEEEccCCCeeeeeecc---------cceeEEEEecCCCcceeEecccccceeecccCCCCeeee-eeccceee--e
Confidence 46899999998755554321 1112234455554 344466666677777764322211 23333222 2
Q ss_pred EEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEE
Q 046684 248 LVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWR 327 (373)
Q Consensus 248 ~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd 327 (373)
+.+-..+.+++ ..+.++.+|+|.. .......+.. |.. +. . .......+...+++|...+.+.+..
T Consensus 162 -~Dv~~pm~vVa-ta~r~i~vynL~n--~~te~k~~~S-pLk-~Q--------~-R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 162 -ADVLYPMAVVA-TAERHIAVYNLEN--PPTEFKRIES-PLK-WQ--------T-RCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred -hhccCceeEEE-ecCCcEEEEEcCC--CcchhhhhcC-ccc-ce--------e-eEEEEEecCCceEeeeecceEEEEe
Confidence 22223334443 2344578999965 2232322211 111 10 0 1222333444557776666677766
Q ss_pred cc
Q 046684 328 ED 329 (373)
Q Consensus 328 ~~ 329 (373)
++
T Consensus 227 id 228 (347)
T KOG0647|consen 227 ID 228 (347)
T ss_pred cC
Confidence 66
No 209
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=67.28 E-value=83 Score=28.35 Aligned_cols=96 Identities=9% Similarity=0.174 Sum_probs=57.5
Q ss_pred cCCceEEEEEECCCCcEEecccCCCCCC-CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhh
Q 046684 216 SARAYSVIGFDIESNTWRELSAPMADRL-EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRL 294 (373)
Q Consensus 216 g~~~~~i~~yd~~~~~w~~~~~~~p~~~-~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~ 294 (373)
|.....+-+.|+++++-... ++... ...++++.+-.=|++....+..+.+|+++. ++ ..++.
T Consensus 169 gs~DrtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~----nk----------vIR~Y 231 (460)
T KOG0285|consen 169 GSADRTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY----NK----------VIRHY 231 (460)
T ss_pred cCCCceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCCCeeEEEechh----hh----------hHHHh
Confidence 45566788889998876543 22222 223455666667888766666689999975 21 11111
Q ss_pred cCCCCCCCceEEEecC--CEEEEEEcCCccEEEEEccccCC
Q 046684 295 SGGKASWGGTRCAAGN--GAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
++-. +...|.... ..+++.++.+..+-++|++ ++
T Consensus 232 hGHl---S~V~~L~lhPTldvl~t~grDst~RvWDiR--tr 267 (460)
T KOG0285|consen 232 HGHL---SGVYCLDLHPTLDVLVTGGRDSTIRVWDIR--TR 267 (460)
T ss_pred cccc---ceeEEEeccccceeEEecCCcceEEEeeec--cc
Confidence 1111 123333332 5566777777789999999 77
No 210
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=66.92 E-value=1.1e+02 Score=28.48 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=56.8
Q ss_pred ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeE-----
Q 046684 207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWC----- 281 (373)
Q Consensus 207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~----- 281 (373)
.+.++|-. .....+-.||+..+.--.- ...|..... ..+.-.++.+.+|+.++ .||.... ..|.
T Consensus 187 ~~~rl~Ta--S~D~t~k~wdlS~g~LLlt-i~fp~si~a-v~lDpae~~~yiGt~~G---~I~~~~~----~~~~~~~~~ 255 (476)
T KOG0646|consen 187 TNARLYTA--SEDRTIKLWDLSLGVLLLT-ITFPSSIKA-VALDPAERVVYIGTEEG---KIFQNLL----FKLSGQSAG 255 (476)
T ss_pred ccceEEEe--cCCceEEEEEeccceeeEE-EecCCccee-EEEcccccEEEecCCcc---eEEeeeh----hcCCccccc
Confidence 34566666 2456677888888754332 233433321 12223455555555443 3444433 2222
Q ss_pred ---EEEeechhhhhhhcCCCCCCCceEEEe--cCCEEEEEEcCCccEEEEEccccCCc
Q 046684 282 ---LIEKVPIEMGMRLSGGKASWGGTRCAA--GNGAICLYREVGLGMIIWREDEDKRK 334 (373)
Q Consensus 282 ---~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~yd~~~~~~~ 334 (373)
+...........+ .+..+.....|-+ .++.+++.|+.++++.++|+. +++
T Consensus 256 v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~--S~Q 310 (476)
T KOG0646|consen 256 VNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY--SKQ 310 (476)
T ss_pred ccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc--hHH
Confidence 1100000000001 1111111333333 488999999999999999999 873
No 211
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=65.94 E-value=11 Score=21.54 Aligned_cols=24 Identities=13% Similarity=-0.068 Sum_probs=17.8
Q ss_pred EEeeCcEEEEeeCCCCceEEEEEcCcc
Q 046684 90 VSSIGSFLLLRPINSTILQLVLCNPFT 116 (373)
Q Consensus 90 ~~~~~g~l~~~gg~~~~~~~~v~np~t 116 (373)
.+..+|.||+.+. ...++.+|+.|
T Consensus 17 ~~v~~g~vyv~~~---dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTG---DGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-T---TSEEEEEETT-
T ss_pred CEEECCEEEEEcC---CCEEEEEeCCC
Confidence 4677999999887 57899999875
No 212
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=65.93 E-value=1.2e+02 Score=28.63 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=79.7
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCce-eeecCCCccccccceeccCCceEEEC-CEEEEEEcCCceEEEEEEC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW-QIIGSMPVEFAVRLTVWTPNESVCTR-GMLYWITSARAYSVIGFDI 227 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~~~~~~~~~~~~~~~~~~-g~ly~~gg~~~~~i~~yd~ 227 (373)
..+|.+.|-. ...|.+||.+.+-- +.+.+. . .....+.+| .--|+..+...++|....+
T Consensus 90 ~S~y~~sgG~---------~~~Vkiwdl~~kl~hr~lkdh---------~-stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 90 QSLYEISGGQ---------SGCVKIWDLRAKLIHRFLKDH---------Q-STVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cceeeeccCc---------CceeeehhhHHHHHhhhccCC---------c-ceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 5577764322 25788999874322 111111 0 112223344 3456665566778888888
Q ss_pred CCCcEEecccCCCCCCCceeEEEE---CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce
Q 046684 228 ESNTWRELSAPMADRLEFATLVSR---NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT 304 (373)
Q Consensus 228 ~~~~w~~~~~~~p~~~~~~~~~~~---~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~ 304 (373)
.+++=... ...+..... .+... ...|..+.++ ...+.+|+..-......|.+++.-|.. +.
T Consensus 151 ~t~~~tt~-f~~~sgqsv-Rll~ys~skr~lL~~asd-~G~VtlwDv~g~sp~~~~~~~HsAP~~-------------gi 214 (673)
T KOG4378|consen 151 KTKQKTTT-FTIDSGQSV-RLLRYSPSKRFLLSIASD-KGAVTLWDVQGMSPIFHASEAHSAPCR-------------GI 214 (673)
T ss_pred ccCccccc-eecCCCCeE-EEeecccccceeeEeecc-CCeEEEEeccCCCcccchhhhccCCcC-------------cc
Confidence 87654322 111211111 11111 2233333333 333789998763344567777766642 24
Q ss_pred EEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 305 RCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 305 ~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.+...+..|++.-|.+.+|..||.. ++
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~--s~ 241 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIR--SQ 241 (673)
T ss_pred eecCCccceEEEecccceEEEeecc--cc
Confidence 4455577888888888899999999 66
No 213
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=65.39 E-value=96 Score=27.23 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=32.0
Q ss_pred CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684 209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
+.++-.| ....+..+|.++++-..- -.............-.|--.+..+.++..+.+|+...
T Consensus 103 s~i~S~g--tDk~v~~wD~~tG~~~rk-~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 103 SHILSCG--TDKTVRGWDAETGKRIRK-HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred CEEEEec--CCceEEEEecccceeeeh-hccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 4555553 467899999998865433 1111000000001112333445555555689999863
No 214
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=63.73 E-value=1.1e+02 Score=27.27 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=48.0
Q ss_pred CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCC---ceeEEEE--CCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684 209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLE---FATLVSR--NQKLTLIGGTCGGDACVWELSEGGDDDIWCLI 283 (373)
Q Consensus 209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~---~~~~~~~--~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v 283 (373)
+++| .|.+...+|++.|+..-.--.. .+..+.. ..-...+ .|++ +++|.....+.+|+++.+ ..|..+
T Consensus 263 n~lf-sGaRk~dkIl~WDiR~~~~pv~--~L~rhv~~TNQRI~FDld~~~~~-LasG~tdG~V~vwdlk~~---gn~~sv 335 (406)
T KOG2919|consen 263 NKLF-SGARKDDKILCWDIRYSRDPVY--ALERHVGDTNQRILFDLDPKGEI-LASGDTDGSVRVWDLKDL---GNEVSV 335 (406)
T ss_pred Ceec-ccccCCCeEEEEeehhccchhh--hhhhhccCccceEEEecCCCCce-eeccCCCccEEEEecCCC---CCcccc
Confidence 4444 4456678899999864322111 1111111 0111111 3333 344445556899999875 336555
Q ss_pred Eeechhhhh--hhcCCCCCCCceEEEecCCEEEEEE
Q 046684 284 EKVPIEMGM--RLSGGKASWGGTRCAAGNGAICLYR 317 (373)
Q Consensus 284 ~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 317 (373)
...-..... .+.+. .+..+...|+.+|-..
T Consensus 336 ~~~~sd~vNgvslnP~----mpilatssGqr~f~~~ 367 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPI----MPILATSSGQRIFKYP 367 (406)
T ss_pred cccccccccceecCcc----cceeeeccCceeecCC
Confidence 432221111 11222 1566777788888754
No 215
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=62.82 E-value=1.7e+02 Score=29.28 Aligned_cols=100 Identities=10% Similarity=0.054 Sum_probs=52.1
Q ss_pred CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCc-eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684 209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEF-ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP 287 (373)
Q Consensus 209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~-~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p 287 (373)
|...+- |.....|..+|+-.++=..- +..+... ..+--.++.=+++....+..+.+|++++ ..-.... |.
T Consensus 119 G~rlaS-GskDt~IIvwDlV~E~Gl~r---L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t----qhCf~Th-vd 189 (888)
T KOG0306|consen 119 GTRLAS-GSKDTDIIVWDLVGEEGLFR---LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET----QHCFETH-VD 189 (888)
T ss_pred CceEee-cCCCccEEEEEeccceeeEE---eecchHHHhHHhccCCCeEEEEeccCceEEEEeccc----ceeeeEE-ec
Confidence 444444 45677899999876543211 1111111 1122234444444444555689999976 4322221 22
Q ss_pred hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
. +.. ..+.+..+ ++.+.++....+-+|++.
T Consensus 190 ~-r~E----------iw~l~~~~-~~lvt~~~dse~~v~~L~ 219 (888)
T KOG0306|consen 190 H-RGE----------IWALVLDE-KLLVTAGTDSELKVWELA 219 (888)
T ss_pred c-cce----------EEEEEEec-ceEEEEecCCceEEEEee
Confidence 1 111 35555556 666666666688888883
No 216
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=62.43 E-value=60 Score=30.57 Aligned_cols=65 Identities=11% Similarity=0.259 Sum_probs=38.1
Q ss_pred EECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEe-cCCEEEEEEcCCccEEEEEc
Q 046684 250 SRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA-GNGAICLYREVGLGMIIWRE 328 (373)
Q Consensus 250 ~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~ 328 (373)
.-+|+-.++||. ...+.||++.. .+=....+++..... +.+.++ .+.+++|....+++|.+||+
T Consensus 474 ~pdgrtLivGGe-astlsiWDLAa----pTprikaeltssapa----------CyALa~spDakvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 474 LPDGRTLIVGGE-ASTLSIWDLAA----PTPRIKAELTSSAPA----------CYALAISPDAKVCFSCCSDGNIAVWDL 538 (705)
T ss_pred cCCCceEEeccc-cceeeeeeccC----CCcchhhhcCCcchh----------hhhhhcCCccceeeeeccCCcEEEEEc
Confidence 348888899887 44579999976 333333444432111 122222 35566666656666777777
Q ss_pred c
Q 046684 329 D 329 (373)
Q Consensus 329 ~ 329 (373)
.
T Consensus 539 h 539 (705)
T KOG0639|consen 539 H 539 (705)
T ss_pred c
Confidence 6
No 217
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.40 E-value=1.1e+02 Score=27.02 Aligned_cols=74 Identities=15% Similarity=0.311 Sum_probs=43.8
Q ss_pred eEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEE---EEEEeecCCceEEEEeecCCCCCCe
Q 046684 204 SVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKL---TLIGGTCGGDACVWELSEGGDDDIW 280 (373)
Q Consensus 204 ~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l---~~~gg~~~~~~~i~~~~~~~~~~~W 280 (373)
++.++| .|+..|.....|..||..++.=.- .+-.+............+ .++.+.++..+.+|+. +.|
T Consensus 48 avAVs~-~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~------~~W 117 (362)
T KOG0294|consen 48 ALAVSG-PYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV------GSW 117 (362)
T ss_pred EEEecc-eeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEc------CCe
Confidence 344555 455556667789999998763221 111112222233333333 6777777777899976 779
Q ss_pred EEEEeec
Q 046684 281 CLIEKVP 287 (373)
Q Consensus 281 ~~v~~~p 287 (373)
..+..+-
T Consensus 118 ~~~~slK 124 (362)
T KOG0294|consen 118 ELLKSLK 124 (362)
T ss_pred EEeeeec
Confidence 8887754
No 218
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=61.02 E-value=72 Score=24.34 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=34.6
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCc---eeeecCCCccccccceeccCCceEE------ECCEEEEEEcCCce
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDA---WQIIGSMPVEFAVRLTVWTPNESVC------TRGMLYWITSARAY 220 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~~~~~~~~~~~~~~~~------~~g~ly~~gg~~~~ 220 (373)
+-+.++|-. +.+.+||...|+ ++++++- ..++. ....+-++||. .
T Consensus 64 ~D~LliGt~-----------t~llaYDV~~N~d~Fyke~~DG-------------vn~i~~g~~~~~~~~l~ivGGn--c 117 (136)
T PF14781_consen 64 RDCLLIGTQ-----------TSLLAYDVENNSDLFYKEVPDG-------------VNAIVIGKLGDIPSPLVIVGGN--C 117 (136)
T ss_pred cCEEEEecc-----------ceEEEEEcccCchhhhhhCccc-------------eeEEEEEecCCCCCcEEEECce--E
Confidence 556777643 478999998887 5544432 11111 23456666543 6
Q ss_pred EEEEEECCCCc--EEe
Q 046684 221 SVIGFDIESNT--WRE 234 (373)
Q Consensus 221 ~i~~yd~~~~~--w~~ 234 (373)
.|.-||-+-++ |+.
T Consensus 118 si~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 118 SIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEEeCCCCcEEEEEe
Confidence 77788877553 543
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.68 E-value=1.3e+02 Score=27.33 Aligned_cols=149 Identities=10% Similarity=0.116 Sum_probs=70.5
Q ss_pred EEEeeCCCCceEEEEEcCccc--ceecc--CC----CCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684 97 LLLRPINSTILQLVLCNPFTR--QFRYL--PL----LNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATY 168 (373)
Q Consensus 97 l~~~gg~~~~~~~~v~np~t~--~w~~l--p~----~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~ 168 (373)
|...||....+.+-+||..+. .|+.- |. +..+.+...+.++... . ++++.-+-.+
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~-~------~~~fat~T~~---------- 225 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGS-P------NYKFATITRY---------- 225 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCC-C------CceEEEEecc----------
Confidence 444566543456677776654 46543 32 2234444344444311 0 1555544433
Q ss_pred cceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-e
Q 046684 169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-T 247 (373)
Q Consensus 169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~ 247 (373)
..+-+||++++. |.+..++.. -.+... .+-..+|.+.++ |.....+..||..++.--.. -+..--++. .
T Consensus 226 -hqvR~YDt~~qR-RPV~~fd~~----E~~is~-~~l~p~gn~Iy~-gn~~g~l~~FD~r~~kl~g~--~~kg~tGsirs 295 (412)
T KOG3881|consen 226 -HQVRLYDTRHQR-RPVAQFDFL----ENPISS-TGLTPSGNFIYT-GNTKGQLAKFDLRGGKLLGC--GLKGITGSIRS 295 (412)
T ss_pred -eeEEEecCcccC-cceeEeccc----cCccee-eeecCCCcEEEE-ecccchhheecccCceeecc--ccCCccCCcce
Confidence 368899998655 555444211 111111 112233444333 46678899999987654322 111111222 2
Q ss_pred EEEECC-EEEEEEeecCCceEEEEeec
Q 046684 248 LVSRNQ-KLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 248 ~~~~~g-~l~~~gg~~~~~~~i~~~~~ 273 (373)
+....+ .+...+|-+ ..+.|++.+.
T Consensus 296 ih~hp~~~~las~GLD-RyvRIhD~kt 321 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLD-RYVRIHDIKT 321 (412)
T ss_pred EEEcCCCceEEeeccc-eeEEEeeccc
Confidence 333333 355555443 2367777753
No 220
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=60.61 E-value=92 Score=25.41 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccC---------CCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAP---------MADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~---------~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
+|++|++.| +..+.||..+++...- .| +|.. ....+...+|++|++.|. ..|.++.
T Consensus 110 ~~~~yfFkg---~~y~ry~~~~~~v~~~-yP~~i~~~w~g~p~~-idaa~~~~~~~~yfF~g~-----~y~~~d~ 174 (194)
T cd00094 110 NGKTYFFKG---DKYWRYDEKTQKMDPG-YPKLIETDFPGVPDK-VDAAFRWLDGYYYFFKGD-----QYWRFDP 174 (194)
T ss_pred CCEEEEEeC---CEEEEEeCCCccccCC-CCcchhhcCCCcCCC-cceeEEeCCCcEEEEECC-----EEEEEeC
Confidence 589999954 5788898766554211 11 1111 112222334889998764 5888876
No 221
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=60.47 E-value=25 Score=31.69 Aligned_cols=82 Identities=15% Similarity=0.302 Sum_probs=47.0
Q ss_pred EEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcc
Q 046684 256 TLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKW 335 (373)
Q Consensus 256 ~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~ 335 (373)
.++.|..+..+.+|++++ ++...+...- . .+.-...-..+++.+..|..++.|.+||++ ++
T Consensus 129 ~l~tGsGD~TvR~WD~~T--eTp~~t~KgH------~-------~WVlcvawsPDgk~iASG~~dg~I~lwdpk--tg-- 189 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDT--ETPLFTCKGH------K-------NWVLCVAWSPDGKKIASGSKDGSIRLWDPK--TG-- 189 (480)
T ss_pred eEEecCCCceEEeeccCC--CCcceeecCC------c-------cEEEEEEECCCcchhhccccCCeEEEecCC--CC--
Confidence 444555555689999987 4433222110 0 000111222367777777778889999999 87
Q ss_pred cEEEecccccCCCCcccccceeEEEecc
Q 046684 336 EWVWVGGCCLTGGKQVQNVPMRGVLLHP 363 (373)
Q Consensus 336 ~W~~~~~~~~~~~~~~~~~~~~~~~~~p 363 (373)
+ .+ +-++.+++- -..+.+++|
T Consensus 190 ~--~~-g~~l~gH~K----~It~Lawep 210 (480)
T KOG0271|consen 190 Q--QI-GRALRGHKK----WITALAWEP 210 (480)
T ss_pred C--cc-cccccCccc----ceeEEeecc
Confidence 3 22 346666654 345566666
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.40 E-value=1.4e+02 Score=27.30 Aligned_cols=156 Identities=10% Similarity=0.018 Sum_probs=76.5
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCc--eeeecCCCccccccceeccCCceEEECC--EEEEEEcCCceEEEEE
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDA--WQIIGSMPVEFAVRLTVWTPNESVCTRG--MLYWITSARAYSVIGF 225 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~g--~ly~~gg~~~~~i~~y 225 (373)
..|+..||.. ....+++||+++.+ |+.-...+..... ..+.-.....++.| ...++.......+-.|
T Consensus 161 p~Iva~GGke--------~~n~lkiwdle~~~qiw~aKNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~Y 231 (412)
T KOG3881|consen 161 PYIVATGGKE--------NINELKIWDLEQSKQIWSAKNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLY 231 (412)
T ss_pred CceEecCchh--------cccceeeeecccceeeeeccCCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEe
Confidence 5677778653 25678889887653 7755432211111 11122234455666 4444445567789999
Q ss_pred ECCCCcEEecccCCCC-CCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce
Q 046684 226 DIESNTWRELSAPMAD-RLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT 304 (373)
Q Consensus 226 d~~~~~w~~~~~~~p~-~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~ 304 (373)
|+..+.--....+... +..+.++..-+..||+. .....+..+++.. + . +....+....+. .-
T Consensus 232 Dt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~g--n~~g~l~~FD~r~----~--k----l~g~~~kg~tGs-----ir 294 (412)
T KOG3881|consen 232 DTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTG--NTKGQLAKFDLRG----G--K----LLGCGLKGITGS-----IR 294 (412)
T ss_pred cCcccCcceeEeccccCcceeeeecCCCcEEEEe--cccchhheecccC----c--e----eeccccCCccCC-----cc
Confidence 9985532222112211 12222222223333332 2222344555543 2 1 111111111111 23
Q ss_pred EEEecCC-EEEEEEcCCccEEEEEccccCC
Q 046684 305 RCAAGNG-AICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 305 ~~~~~~~-~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.+..+.+ .+...+|-+..+-+||.+ ++
T Consensus 295 sih~hp~~~~las~GLDRyvRIhD~k--tr 322 (412)
T KOG3881|consen 295 SIHCHPTHPVLASCGLDRYVRIHDIK--TR 322 (412)
T ss_pred eEEEcCCCceEEeeccceeEEEeecc--cc
Confidence 4445544 677777888889999999 76
No 223
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=59.37 E-value=1.6e+02 Score=27.87 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=34.9
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceee--ecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEE
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI--IGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFD 226 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd 226 (373)
.+|++--|++ ..+.+||++...=.. ...-| ..++++- +|.+.++ |...+.++.||
T Consensus 221 e~l~vsVG~D----------kki~~yD~~s~~s~~~l~y~~P-----------lstvaf~~~G~~L~a-G~s~G~~i~YD 278 (673)
T KOG4378|consen 221 EALLVSVGYD----------KKINIYDIRSQASTDRLTYSHP-----------LSTVAFSECGTYLCA-GNSKGELIAYD 278 (673)
T ss_pred cceEEEeccc----------ceEEEeecccccccceeeecCC-----------cceeeecCCceEEEe-ecCCceEEEEe
Confidence 6777766775 679999997544211 11111 1222333 3555555 67789999999
Q ss_pred CCC
Q 046684 227 IES 229 (373)
Q Consensus 227 ~~~ 229 (373)
+..
T Consensus 279 ~R~ 281 (673)
T KOG4378|consen 279 MRS 281 (673)
T ss_pred ccc
Confidence 864
No 224
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=59.05 E-value=1.3e+02 Score=26.62 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=74.5
Q ss_pred cceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEE-ecccCCCCCCCc
Q 046684 169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWR-ELSAPMADRLEF 245 (373)
Q Consensus 169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~-~~~~~~p~~~~~ 245 (373)
...+.+||..|-+--... .|.. ........+-+ .|++|+.+ ...+.|-.+|--++.-- .+..........
T Consensus 237 Hp~~rlYdv~T~Qcfvsa-nPd~-----qht~ai~~V~Ys~t~~lYvTa-SkDG~IklwDGVS~rCv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSA-NPDD-----QHTGAITQVRYSSTGSLYVTA-SKDGAIKLWDGVSNRCVRTIGNAHGGSEVC 309 (430)
T ss_pred CCceeEEeccceeEeeec-Cccc-----ccccceeEEEecCCccEEEEe-ccCCcEEeeccccHHHHHHHHhhcCCceee
Confidence 456778888765422222 2321 01111112222 58999995 45667778886665432 221111111111
Q ss_pred eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCCccEE
Q 046684 246 ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVGLGMI 324 (373)
Q Consensus 246 ~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 324 (373)
.....-+|+-.+..|.+ .-+..|++.. ++--+...-.....++ ..+.-+++.+ ++.+++.+..+..+.
T Consensus 310 Sa~Ftkn~kyiLsSG~D-S~vkLWEi~t----~R~l~~YtGAg~tgrq------~~rtqAvFNhtEdyVl~pDEas~slc 378 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKD-STVKLWEIST----GRMLKEYTGAGTTGRQ------KHRTQAVFNHTEDYVLFPDEASNSLC 378 (430)
T ss_pred eEEEccCCeEEeecCCc-ceeeeeeecC----CceEEEEecCCcccch------hhhhhhhhcCccceEEccccccCcee
Confidence 22333467755555543 3368999976 5544443322111000 0112344444 678888888888899
Q ss_pred EEEccccCC
Q 046684 325 IWREDEDKR 333 (373)
Q Consensus 325 ~yd~~~~~~ 333 (373)
.+|.+ +.
T Consensus 379 sWdaR--ta 385 (430)
T KOG0640|consen 379 SWDAR--TA 385 (430)
T ss_pred ecccc--ch
Confidence 99988 65
No 225
>PF13013 F-box-like_2: F-box-like domain
Probab=58.56 E-value=7 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=23.4
Q ss_pred CcchHHHHHHHHhcCChhhHHHhhcccc
Q 046684 3 SNLHLDVLANIFSFLSPDSLARAKSVCS 30 (373)
Q Consensus 3 ~~Lp~dll~~Il~rLP~~~l~r~r~Vck 30 (373)
.+||+||+..|+..-.-+++...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4799999999999998888866666666
No 226
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=58.45 E-value=1.5e+02 Score=27.29 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=44.2
Q ss_pred EEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe-echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEE
Q 046684 248 LVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK-VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIW 326 (373)
Q Consensus 248 ~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~y 326 (373)
....+|.|...||.+... .||++.. .+=..+.. -..+.+ ......+|.....|+.++.+-++
T Consensus 310 af~~DGSL~~tGGlD~~~-RvWDlRt----gr~im~L~gH~k~I~------------~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLG-RVWDLRT----GRCIMFLAGHIKEIL------------SVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred EecCCCceeeccCccchh-heeeccc----CcEEEEeccccccee------------eEeECCCceEEeecCCCCcEEEe
Confidence 345689999999877665 8999976 43222211 111211 22333478888888888889999
Q ss_pred EccccCC
Q 046684 327 REDEDKR 333 (373)
Q Consensus 327 d~~~~~~ 333 (373)
|++ ..
T Consensus 373 DLR--~r 377 (459)
T KOG0272|consen 373 DLR--MR 377 (459)
T ss_pred eec--cc
Confidence 998 66
No 227
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=58.19 E-value=1.3e+02 Score=26.41 Aligned_cols=107 Identities=9% Similarity=-0.016 Sum_probs=56.7
Q ss_pred EEEEEcCCceEEEEEECCCCcEEe-----------cccCCCC-CCCcee---EEEECCEEEEEEeecCCceEEEEeecCC
Q 046684 211 LYWITSARAYSVIGFDIESNTWRE-----------LSAPMAD-RLEFAT---LVSRNQKLTLIGGTCGGDACVWELSEGG 275 (373)
Q Consensus 211 ly~~gg~~~~~i~~yd~~~~~w~~-----------~~~~~p~-~~~~~~---~~~~~g~l~~~gg~~~~~~~i~~~~~~~ 275 (373)
-|.+.|.....+..||+++-+=.+ +..+.+. ++.+.. .--.+..+|..+..+. .+.+|+.++
T Consensus 57 rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh-tlKVWDtnT-- 133 (397)
T KOG4283|consen 57 RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH-TLKVWDTNT-- 133 (397)
T ss_pred eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc-eEEEeeccc--
Confidence 344546677889999987643111 1001111 111111 1113455555544333 268998865
Q ss_pred CCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 276 DDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 276 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
-.=.....|+...+.+ .+.-++....+...|.....+..+|++ ++
T Consensus 134 --lQ~a~~F~me~~VYsh---------amSp~a~sHcLiA~gtr~~~VrLCDi~--SG 178 (397)
T KOG4283|consen 134 --LQEAVDFKMEGKVYSH---------AMSPMAMSHCLIAAGTRDVQVRLCDIA--SG 178 (397)
T ss_pred --ceeeEEeecCceeehh---------hcChhhhcceEEEEecCCCcEEEEecc--CC
Confidence 3333345577766553 222333445666677777788888888 77
No 228
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.84 E-value=1.4e+02 Score=26.43 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=107.3
Q ss_pred CcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEE-cCCCCCCCCCceEEEEEeccCCCCCCCCcccceE
Q 046684 94 GSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVM-EGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMV 172 (373)
Q Consensus 94 ~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~-~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~ 172 (373)
.+.+.+++.. ......++|+.+++-...=..+..|....-+++. ++ ..+|..- .+ .....-.+
T Consensus 16 ~~~avafaRR-PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG---------~~LytTE-nd-----~~~g~G~I 79 (305)
T PF07433_consen 16 RPEAVAFARR-PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG---------RLLYTTE-ND-----YETGRGVI 79 (305)
T ss_pred CCeEEEEEeC-CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC---------CEEEEec-cc-----cCCCcEEE
Confidence 4555555542 2356789999999865432234444433333332 11 4555542 22 23345678
Q ss_pred EEEECCCCceeeecCCCccccccceeccCCceEEE-CC-EEEEEEcC----------------CceEEEEEECCCCcEEe
Q 046684 173 EMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RG-MLYWITSA----------------RAYSVIGFDIESNTWRE 234 (373)
Q Consensus 173 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g-~ly~~gg~----------------~~~~i~~yd~~~~~w~~ 234 (373)
-+||.. +..+++...+ ......+..... +| .|.+..|. -..++...|..+++-..
T Consensus 80 gVyd~~-~~~~ri~E~~------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 80 GVYDAA-RGYRRIGEFP------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred EEEECc-CCcEEEeEec------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 999997 6677776664 233344444333 45 33333221 13467777788776433
Q ss_pred cccCCCC--CC-CceeEEEECCEEEEEEeecCCc-------eEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCce
Q 046684 235 LSAPMAD--RL-EFATLVSRNQKLTLIGGTCGGD-------ACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGT 304 (373)
Q Consensus 235 ~~~~~p~--~~-~~~~~~~~~g~l~~~gg~~~~~-------~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~ 304 (373)
- ..+|. .+ +-.+++.-.+...+++...... +-++.... . -....+|.+....+.+.. ..
T Consensus 153 q-~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-----~-~~~~~~p~~~~~~l~~Y~----gS 221 (305)
T PF07433_consen 153 Q-VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-----A-LRLLPAPEEQWRRLNGYI----GS 221 (305)
T ss_pred e-eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-----c-ceeccCChHHHHhhCCce----EE
Confidence 3 22322 22 2234555444444444332211 33444322 1 333455555544333221 33
Q ss_pred EEEec-CCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684 305 RCAAG-NGAICLYREVGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 305 ~~~~~-~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
.++.. ++.|.+.....+.+.+||.+ ++ +|.....
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~--tg--~~~~~~~ 256 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAA--TG--RLLGSVP 256 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECC--CC--CEeeccc
Confidence 33333 34677766666779999999 99 7765533
No 229
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=56.22 E-value=62 Score=31.40 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=59.6
Q ss_pred CCceEEEEEECCCCcEEecc----cCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhh
Q 046684 217 ARAYSVIGFDIESNTWRELS----APMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGM 292 (373)
Q Consensus 217 ~~~~~i~~yd~~~~~w~~~~----~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~ 292 (373)
...+.|..||....+++.-. .++-.....+.+.-+.|+..++....+..+.+|+++. .+-.-.. +-.+-
T Consensus 71 dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~----s~l~G~~-~~~GH-- 143 (720)
T KOG0321|consen 71 DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT----SRLVGGR-LNLGH-- 143 (720)
T ss_pred cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc----ceeecce-eeccc--
Confidence 55677889999888777211 1221222223444456777777766666689999987 3222111 11110
Q ss_pred hhcCCCCCCCceEEEe-cCCEEEEEEcCCccEEEEEccccCC
Q 046684 293 RLSGGKASWGGTRCAA-GNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.+ .+ ...|+. .+..+|+.||.++.+.++|++ -+
T Consensus 144 --~~---Sv-kS~cf~~~n~~vF~tGgRDg~illWD~R--~n 177 (720)
T KOG0321|consen 144 --TG---SV-KSECFMPTNPAVFCTGGRDGEILLWDCR--CN 177 (720)
T ss_pred --cc---cc-chhhhccCCCcceeeccCCCcEEEEEEe--cc
Confidence 00 01 234444 466788889999999999998 65
No 230
>PTZ00334 trans-sialidase; Provisional
Probab=56.14 E-value=1.5e+02 Score=30.17 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=54.3
Q ss_pred CceEEECCEEEEEE-c----CCceEEEEEECCCCcEEecccCCCCCCCceeEEEEC-CEEEEEEeecCCceEEEEeecCC
Q 046684 202 NESVCTRGMLYWIT-S----ARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRN-QKLTLIGGTCGGDACVWELSEGG 275 (373)
Q Consensus 202 ~~~~~~~g~ly~~g-g----~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~-g~l~~~gg~~~~~~~i~~~~~~~ 275 (373)
..++.-||.|.+-- + ...-.++.|...++.|..-....+.......++.-+ |+|.|+...++..-.+|+-.+
T Consensus 264 SGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~dG~RrVYES~D-- 341 (780)
T PTZ00334 264 SGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACDDGRRRVYESGD-- 341 (780)
T ss_pred CeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeCCCCEEEEEECC--
Confidence 44455577755442 1 223467888877788976522334445667788885 999998876555457999877
Q ss_pred CCCCeEEE-Eeec
Q 046684 276 DDDIWCLI-EKVP 287 (373)
Q Consensus 276 ~~~~W~~v-~~~p 287 (373)
-..+|++. ..++
T Consensus 342 mG~tWtEAlGTLs 354 (780)
T PTZ00334 342 KGDSWTEALGTLS 354 (780)
T ss_pred CCCChhhCCCccc
Confidence 66789863 3343
No 231
>PRK01742 tolB translocation protein TolB; Provisional
Probab=56.07 E-value=1.8e+02 Score=27.27 Aligned_cols=103 Identities=11% Similarity=0.015 Sum_probs=50.1
Q ss_pred ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684 106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII 185 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~ 185 (373)
...++++|..+++-+.+...+.... .... .+.+ .+|+.....+ + ...++++|..++..+.+
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~--~~~w--SPDG-------~~La~~~~~~-----g---~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNG--APAF--SPDG-------SRLAFASSKD-----G---VLNIYVMGANGGTPSQL 287 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccC--ceeE--CCCC-------CEEEEEEecC-----C---cEEEEEEECCCCCeEee
Confidence 4579999999887666554432211 1111 1110 3455443222 1 24588889888776665
Q ss_pred cCCCccccccceeccCCceEEECCE-EEEEEcC-CceEEEEEECCCCcEEec
Q 046684 186 GSMPVEFAVRLTVWTPNESVCTRGM-LYWITSA-RAYSVIGFDIESNTWREL 235 (373)
Q Consensus 186 ~~~p~~~~~~~~~~~~~~~~~~~g~-ly~~gg~-~~~~i~~yd~~~~~w~~~ 235 (373)
...+. ........-+|+ +++.... ....|+.+|...+.-+.+
T Consensus 288 t~~~~--------~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 288 TSGAG--------NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred ccCCC--------CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 43211 011111223554 5544321 234666667665544433
No 232
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.80 E-value=2.5e+02 Score=29.68 Aligned_cols=103 Identities=11% Similarity=0.155 Sum_probs=60.4
Q ss_pred EEEEEcCCceEEEEEECCCCc---------EEecccCCCCCCCceeEEE---ECCEEEEEEeecCCceEEEEeecCCCCC
Q 046684 211 LYWITSARAYSVIGFDIESNT---------WRELSAPMADRLEFATLVS---RNQKLTLIGGTCGGDACVWELSEGGDDD 278 (373)
Q Consensus 211 ly~~gg~~~~~i~~yd~~~~~---------w~~~~~~~p~~~~~~~~~~---~~g~l~~~gg~~~~~~~i~~~~~~~~~~ 278 (373)
+.+. +...+.|-.|+.-... |+.+...++..+....++. ..|.|++.|+. ..+.||+.+.
T Consensus 1125 LlLt-as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~--r~IRIWDa~~----- 1196 (1387)
T KOG1517|consen 1125 LLLT-ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV--RSIRIWDAHK----- 1196 (1387)
T ss_pred heee-eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe--eEEEEEeccc-----
Confidence 3333 3455667777665554 5555333455554432222 36788877652 3389999854
Q ss_pred CeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 279 IWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 279 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
=.++..+|...... .....+-..++.+++.|-.++.+-+||.+
T Consensus 1197 -E~~~~diP~~s~t~-------vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1197 -EQVVADIPYGSSTL-------VTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred -ceeEeecccCCCcc-------ceeecccccCCceEEEeecCCceEEeecc
Confidence 24566787663210 00223333467888888888889999987
No 233
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=53.03 E-value=1.5e+02 Score=25.45 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=39.2
Q ss_pred EEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCce-eEEEE-CCEEEEEEeecCCceEEEEeec
Q 046684 205 VCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFA-TLVSR-NQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 205 ~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~-~~~~~-~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
+..-+.-..+.+.....|.+.|+.++..... ++|...... .+.+. +|+..+. ........+|++-.
T Consensus 131 vlhpnQteLis~dqsg~irvWDl~~~~c~~~--liPe~~~~i~sl~v~~dgsml~a-~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 131 VLHPNQTELISGDQSGNIRVWDLGENSCTHE--LIPEDDTSIQSLTVMPDGSMLAA-ANNKGNCYVWRLLN 198 (311)
T ss_pred EecCCcceEEeecCCCcEEEEEccCCccccc--cCCCCCcceeeEEEcCCCcEEEE-ecCCccEEEEEccC
Confidence 3334555555567788899999999988766 333333322 33333 5554444 33444458998854
No 234
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=52.93 E-value=1.5e+02 Score=25.47 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=60.2
Q ss_pred ceEEEEECCC-CceeeecCCCccccccceeccCCceEE-ECCEEEEEEcC--CceEEEEEECC-CCcEEecc-cCCCCCC
Q 046684 170 SMVEMYDSRH-DAWQIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSA--RAYSVIGFDIE-SNTWRELS-APMADRL 243 (373)
Q Consensus 170 ~~~~~yd~~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~--~~~~i~~yd~~-~~~w~~~~-~~~p~~~ 243 (373)
.....|+... .+|+.....+. .........+. -+|.++++... .....+.+... -.+|+... ..+|...
T Consensus 134 ~~~~~~S~D~G~tW~~~~~~~~-----~~~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~ 208 (275)
T PF13088_consen 134 SAFVYYSDDGGKTWSSGSPIPD-----GQGECEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPN 208 (275)
T ss_dssp EEEEEEESSTTSSEEEEEECEC-----SEEEEEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCC
T ss_pred ceEEEEeCCCCceeeccccccc-----cCCcceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCccc
Confidence 3444455554 45988876521 11112222222 36888888522 12344455544 34798752 1334444
Q ss_pred CceeEEEE-CCEEEEEEeec--CCceEEEEeecCCCCCCeEEEEeechhh
Q 046684 244 EFATLVSR-NQKLTLIGGTC--GGDACVWELSEGGDDDIWCLIEKVPIEM 290 (373)
Q Consensus 244 ~~~~~~~~-~g~l~~~gg~~--~~~~~i~~~~~~~~~~~W~~v~~~p~~~ 290 (373)
....++.+ +|+++++.... ...+.++.-.+ +..+|.....+....
T Consensus 209 ~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D--~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 209 SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSED--GGKTWSRPKTIDDGP 256 (275)
T ss_dssp EEEEEEECTTSEEEEEEECSSTSEEEEEEEECT--TCEEEEEEEEEEEEE
T ss_pred CCceEEEcCCCCEEEEEECCCCCCceEEEEEeC--CCCcCCccEEEeCCC
Confidence 33344443 67888887732 22366666554 678999887765543
No 235
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=52.29 E-value=1.7e+02 Score=25.93 Aligned_cols=65 Identities=11% Similarity=-0.085 Sum_probs=37.3
Q ss_pred EEEEEecCCCeeEEEEeCCCCCccccCCCCCCCCc---eeEEeeCcEEEEeeCCCCceEEEEEcCcccceec
Q 046684 53 FLALPTRNRGLCCYVHNPVSDKWHVLSLDFLPYPV---RPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRY 121 (373)
Q Consensus 53 l~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~---~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~ 121 (373)
+++++..++ .+.+||..+-....-..|...... ..--+..|.+|+.+.. ...+.+||-..++..+
T Consensus 230 fllvgTdHp--~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk--DG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 230 FLLVGTDHP--TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK--DGAIKLWDGVSNRCVR 297 (430)
T ss_pred eEEEecCCC--ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEecc--CCcEEeeccccHHHHH
Confidence 445444444 444588766443322222211111 1123568899999875 5678999999988654
No 236
>PTZ00421 coronin; Provisional
Probab=52.15 E-value=2.2e+02 Score=27.31 Aligned_cols=135 Identities=7% Similarity=0.069 Sum_probs=64.1
Q ss_pred ceEEEEEcCcccceec-cCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCce-e
Q 046684 106 ILQLVLCNPFTRQFRY-LPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAW-Q 183 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W-~ 183 (373)
...+.+||..+++-.. +.... ......... + + +++++.|+.+ ..+.+||.++++= .
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~---~~V~sla~s-p---d-----G~lLatgs~D----------g~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHS---DQITSLEWN-L---D-----GSLLCTTSKD----------KKLNIIDPRDGTIVS 204 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceEEEEEE-C---C-----CCEEEEecCC----------CEEEEEECCCCcEEE
Confidence 4678999998875322 21111 111111111 1 1 5666666654 4688999987652 1
Q ss_pred eecCCCccccccceeccCCceEEE-C-CEEEEEEc--CCceEEEEEECCCCc--EEecccCCCCCCCceeEE--EECCEE
Q 046684 184 IIGSMPVEFAVRLTVWTPNESVCT-R-GMLYWITS--ARAYSVIGFDIESNT--WRELSAPMADRLEFATLV--SRNQKL 255 (373)
Q Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~~~-~-g~ly~~gg--~~~~~i~~yd~~~~~--w~~~~~~~p~~~~~~~~~--~~~g~l 255 (373)
.+..- .......++.. + +.+...|. .....|..||+.+.. .... .... .....+. ..++.+
T Consensus 205 tl~~H--------~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~--~~d~-~~~~~~~~~d~d~~~ 273 (493)
T PTZ00421 205 SVEAH--------ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV--DLDQ-SSALFIPFFDEDTNL 273 (493)
T ss_pred EEecC--------CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe--ccCC-CCceEEEEEcCCCCE
Confidence 11111 00001111222 2 34443431 234678899987532 1111 1111 1111122 225666
Q ss_pred EEEEeecCCceEEEEeec
Q 046684 256 TLIGGTCGGDACVWELSE 273 (373)
Q Consensus 256 ~~~gg~~~~~~~i~~~~~ 273 (373)
++++|..+..+.+|++..
T Consensus 274 L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 274 LYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEEEeCCCeEEEEEeeC
Confidence 677765556689999976
No 237
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=51.49 E-value=1.6e+02 Score=25.30 Aligned_cols=93 Identities=12% Similarity=0.159 Sum_probs=53.9
Q ss_pred CCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe--echhhhhhh
Q 046684 217 ARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK--VPIEMGMRL 294 (373)
Q Consensus 217 ~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~--~p~~~~~~~ 294 (373)
.....|..+|..+++-..- ...+.+.... -+..+|++..+. .+..+.+|+.+. ...+.. ||...-.
T Consensus 162 add~tVRLWD~rTgt~v~s-L~~~s~VtSl-Evs~dG~ilTia--~gssV~Fwdaks------f~~lKs~k~P~nV~S-- 229 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQS-LEFNSPVTSL-EVSQDGRILTIA--YGSSVKFWDAKS------FGLLKSYKMPCNVES-- 229 (334)
T ss_pred ccCCceEEEEeccCcEEEE-EecCCCCcce-eeccCCCEEEEe--cCceeEEecccc------ccceeeccCcccccc--
Confidence 4456677788877754432 2333222211 122356665553 233478998744 455543 6665422
Q ss_pred cCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 295 SGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
+..-.+..+|+.||.+..++.||.. ++
T Consensus 230 ----------ASL~P~k~~fVaGged~~~~kfDy~--Tg 256 (334)
T KOG0278|consen 230 ----------ASLHPKKEFFVAGGEDFKVYKFDYN--TG 256 (334)
T ss_pred ----------ccccCCCceEEecCcceEEEEEecc--CC
Confidence 1222245789999998889999999 87
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=50.23 E-value=1.8e+02 Score=25.76 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=36.2
Q ss_pred EEEEEEcCCceEEEEEECCCCcEE---ecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684 210 MLYWITSARAYSVIGFDIESNTWR---ELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 210 ~ly~~gg~~~~~i~~yd~~~~~w~---~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
.+.++-|...+.+..-|+...+-. .+ +-......+-....+|.+...+...++-+.||+..+
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~ 213 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED 213 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC
Confidence 344444666678888888766542 11 111222222233447887777777776788998765
No 239
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=49.75 E-value=2e+02 Score=26.05 Aligned_cols=113 Identities=12% Similarity=0.208 Sum_probs=54.1
Q ss_pred EEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCC-CceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684 205 VCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL-EFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI 283 (373)
Q Consensus 205 ~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~-~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v 283 (373)
...+-+.|.+.....+.+-.+++..+.+-. .+.... ....+..-.+..++.|+.. ..+..|+.+. .-.....
T Consensus 325 l~lhP~e~~fASas~dnik~w~~p~g~f~~---nlsgh~~iintl~~nsD~v~~~G~dn-g~~~fwdwks---g~nyQ~~ 397 (460)
T KOG0285|consen 325 LCLHPKENLFASASPDNIKQWKLPEGEFLQ---NLSGHNAIINTLSVNSDGVLVSGGDN-GSIMFWDWKS---GHNYQRG 397 (460)
T ss_pred EecCCchhhhhccCCccceeccCCccchhh---ccccccceeeeeeeccCceEEEcCCc-eEEEEEecCc---Ccccccc
Confidence 344555555554455666666655444321 122211 2223444456666666543 4478888875 3445555
Q ss_pred EeechhhhhhhcCCCCCCCceEEEec-CCEEEEEEcCCccEEEEEcc
Q 046684 284 EKVPIEMGMRLSGGKASWGGTRCAAG-NGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 284 ~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~yd~~ 329 (373)
..+..+..-..-.+ .++++.. -+.=++.++....|-+|..+
T Consensus 398 ~t~vqpGSl~sEag-----I~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 398 QTIVQPGSLESEAG-----IFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cccccCCccccccc-----eeEEeecccCceEEeccCCcceEEEecc
Confidence 44333222111111 1333333 34445555555567777665
No 240
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=49.69 E-value=1.9e+02 Score=25.76 Aligned_cols=121 Identities=15% Similarity=0.143 Sum_probs=62.1
Q ss_pred cceEEEEECCCCceeeecCCCccccccceeccCCceEE-ECC-EEEEEEcCCceEEEEEECCCC------c--EEecccC
Q 046684 169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVC-TRG-MLYWITSARAYSVIGFDIESN------T--WRELSAP 238 (373)
Q Consensus 169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~g-~ly~~gg~~~~~i~~yd~~~~------~--w~~~~~~ 238 (373)
.-.++.+|+ .++..++..- ... .....++ -+| .+|+. ....+.+++|+.... + +... .
T Consensus 142 ~G~lyr~~p-~g~~~~l~~~-------~~~-~~NGla~SpDg~tly~a-DT~~~~i~r~~~d~~~g~~~~~~~~~~~--~ 209 (307)
T COG3386 142 TGSLYRVDP-DGGVVRLLDD-------DLT-IPNGLAFSPDGKTLYVA-DTPANRIHRYDLDPATGPIGGRRGFVDF--D 209 (307)
T ss_pred cceEEEEcC-CCCEEEeecC-------cEE-ecCceEECCCCCEEEEE-eCCCCeEEEEecCcccCccCCcceEEEc--c
Confidence 347899998 4555544332 011 1122222 356 67776 445678888887631 1 1111 1
Q ss_pred CCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe--echhhhhhhcCCCCCCCceEEEec---CCEE
Q 046684 239 MADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK--VPIEMGMRLSGGKASWGGTRCAAG---NGAI 313 (373)
Q Consensus 239 ~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~--~p~~~~~~~~~~~~~~~~~~~~~~---~~~i 313 (373)
.....-....+..+|.|++.....+..+.+|.++ ++++.. +|... +..++.. .+.|
T Consensus 210 ~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-------G~l~~~i~lP~~~------------~t~~~FgG~~~~~L 270 (307)
T COG3386 210 EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-------GKLLGEIKLPVKR------------PTNPAFGGPDLNTL 270 (307)
T ss_pred CCCCCCCceEEeCCCCEEEecccCCceEEEECCC-------CcEEEEEECCCCC------------CccceEeCCCcCEE
Confidence 1112222234556889997554444457788763 455554 55322 2233333 3788
Q ss_pred EEEEcCC
Q 046684 314 CLYREVG 320 (373)
Q Consensus 314 ~~~~~~~ 320 (373)
|+.....
T Consensus 271 ~iTs~~~ 277 (307)
T COG3386 271 YITSARS 277 (307)
T ss_pred EEEecCC
Confidence 8876443
No 241
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=49.07 E-value=38 Score=17.55 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=15.5
Q ss_pred EecCCEEEEEEcCCccEEEE
Q 046684 307 AAGNGAICLYREVGLGMIIW 326 (373)
Q Consensus 307 ~~~~~~i~~~~~~~~~~~~y 326 (373)
+..+|.||+.+.....+.+|
T Consensus 9 v~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 9 VDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EETTSEEEEEECCCTEEEEE
T ss_pred EeCCCCEEEEECCCCEEEEC
Confidence 33689999998777777765
No 242
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=48.30 E-value=2.1e+02 Score=25.85 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=60.5
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE-CCEEEEEE--------cCCce
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWIT--------SARAY 220 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~g--------g~~~~ 220 (373)
.++||.-... ......++++|..+++- +.-++. ......+..- +..+|+.. |.+..
T Consensus 3 ~rvyV~D~~~------~~~~~rv~viD~d~~k~--lGmi~~-------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtD 67 (342)
T PF06433_consen 3 HRVYVQDPVF------FHMTSRVYVIDADSGKL--LGMIDT-------GFLGNVALSPDGKTIYVAETFYSRGTRGERTD 67 (342)
T ss_dssp TEEEEEE-GG------GGSSEEEEEEETTTTEE--EEEEEE-------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEE
T ss_pred cEEEEECCcc------ccccceEEEEECCCCcE--EEEeec-------ccCCceeECCCCCEEEEEEEEEecccccccee
Confidence 6788875422 11235899999888763 222211 1111111112 34566654 45577
Q ss_pred EEEEEECCCCcEEecccCCCCC-CC------ceeEEEECCE-EEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhh
Q 046684 221 SVIGFDIESNTWRELSAPMADR-LE------FATLVSRNQK-LTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMG 291 (373)
Q Consensus 221 ~i~~yd~~~~~w~~~~~~~p~~-~~------~~~~~~~~g~-l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~ 291 (373)
.|..||.++-+-..- ..+|.. |. .......+|+ +|+........+.|-++.. ++- +.+++.+.+
T Consensus 68 vv~~~D~~TL~~~~E-I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~----~kv--v~ei~~PGC 139 (342)
T PF06433_consen 68 VVEIWDTQTLSPTGE-IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA----KKV--VGEIDTPGC 139 (342)
T ss_dssp EEEEEETTTTEEEEE-EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT----TEE--EEEEEGTSE
T ss_pred EEEEEecCcCcccce-EecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC----Cce--eeeecCCCE
Confidence 899999998854432 222321 21 1122223555 5555554444577777754 544 445555443
No 243
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=48.26 E-value=80 Score=22.14 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=14.9
Q ss_pred CceEEEEEECCCCcEEec
Q 046684 218 RAYSVIGFDIESNTWREL 235 (373)
Q Consensus 218 ~~~~i~~yd~~~~~w~~~ 235 (373)
..+.++.|||.+++.+.+
T Consensus 35 ~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp --EEEEEEETTTTEEEEE
T ss_pred CCcCEEEEECCCCeEEEe
Confidence 357899999999999887
No 244
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.96 E-value=1.9e+02 Score=30.33 Aligned_cols=107 Identities=10% Similarity=0.172 Sum_probs=57.1
Q ss_pred CCceEEEEEECCCCcEEecccCC--CCCCCceeEEEE----CCEEEEEEeecCCc-eEEEEeecCCCCCCeEEEEeechh
Q 046684 217 ARAYSVIGFDIESNTWRELSAPM--ADRLEFATLVSR----NQKLTLIGGTCGGD-ACVWELSEGGDDDIWCLIEKVPIE 289 (373)
Q Consensus 217 ~~~~~i~~yd~~~~~w~~~~~~~--p~~~~~~~~~~~----~g~l~~~gg~~~~~-~~i~~~~~~~~~~~W~~v~~~p~~ 289 (373)
...+.+.+.|+..+ +.+ ..+ ...+.....+.- --+|.+..+.+... +..|++.. ..-|..
T Consensus 181 s~sg~~~iWDlr~~--~pi-i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~----------assP~k 247 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKK--KPI-IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF----------ASSPLK 247 (1049)
T ss_pred CCCCCceeccccCC--Ccc-cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc----------cCCchh
Confidence 44567888888877 222 222 222222222222 12455555444333 78888754 222333
Q ss_pred hhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEeccccc
Q 046684 290 MGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCL 345 (373)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~ 345 (373)
.+...-.+ .-....+..|+.+.+..|.++.++++|++ +. +.+..+|.
T Consensus 248 ~~~~H~~G---ilslsWc~~D~~lllSsgkD~~ii~wN~~--tg----Evl~~~p~ 294 (1049)
T KOG0307|consen 248 ILEGHQRG---ILSLSWCPQDPRLLLSSGKDNRIICWNPN--TG----EVLGELPA 294 (1049)
T ss_pred hhcccccc---eeeeccCCCCchhhhcccCCCCeeEecCC--Cc----eEeeecCC
Confidence 32111111 01233333466888888888999999999 88 55666665
No 245
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=47.95 E-value=1.9e+02 Score=25.36 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=41.9
Q ss_pred eEEEEEe-ccCCCCCC-CCcccceEEEEECCCCceeeecCCCccccccceeccCC-ceEEEC-------CEEEEEEcCCc
Q 046684 150 FRIYVAG-GMSDEPRG-GATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPN-ESVCTR-------GMLYWITSARA 219 (373)
Q Consensus 150 ~kl~~~g-g~~~~~~~-~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~-~~~~~~-------g~ly~~gg~~~ 219 (373)
++++++- |.-..... .......+.+||..+++=...-.+|.... . ..... ..++-. +.+|+.- ...
T Consensus 12 ~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~--~-~~s~lndl~VD~~~~~~~~~~aYItD-~~~ 87 (287)
T PF03022_consen 12 GRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIA--P-PDSFLNDLVVDVRDGNCDDGFAYITD-SGG 87 (287)
T ss_dssp SEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS----TCGGEEEEEEECTTTTS-SEEEEEEE-TTT
T ss_pred CCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHc--c-cccccceEEEEccCCCCcceEEEEeC-CCc
Confidence 8899983 32100000 01234689999999998433333432210 1 11111 112221 4677774 445
Q ss_pred eEEEEEECCCC-cEEec
Q 046684 220 YSVIGFDIESN-TWREL 235 (373)
Q Consensus 220 ~~i~~yd~~~~-~w~~~ 235 (373)
..+.+||..++ .|+.+
T Consensus 88 ~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 88 PGLIVYDLATGKSWRVL 104 (287)
T ss_dssp CEEEEEETTTTEEEEEE
T ss_pred CcEEEEEccCCcEEEEe
Confidence 69999999986 56666
No 246
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.44 E-value=2.1e+02 Score=25.49 Aligned_cols=28 Identities=11% Similarity=-0.086 Sum_probs=16.8
Q ss_pred eEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 304 TRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 304 ~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
..+...++.-+++|+.+..+...|.+ +.
T Consensus 212 l~~~~l~~~~L~vG~d~~~i~~~D~d--s~ 239 (362)
T KOG0294|consen 212 LCATFLDGSELLVGGDNEWISLKDTD--SD 239 (362)
T ss_pred eeeeecCCceEEEecCCceEEEeccC--CC
Confidence 33334445555556666677777777 65
No 247
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=47.14 E-value=4e+02 Score=28.72 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=43.6
Q ss_pred CEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcc
Q 046684 253 QKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 253 g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~ 329 (373)
+...++-+.....+..|+... ..+.|+....+..+.. ...|+...+..+++|...+.+.+||++
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~--~~~~w~lk~~~~hG~v-----------TSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRM--RHDAWRLKNQLRHGLV-----------TSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred cceeEEEEEeccceEEecchh--hhhHHhhhcCccccce-----------eEEEecCCceEEEEecCCceEEEEEee
Confidence 333333334444578999877 6778988776665442 355555677788888888889999998
No 248
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=44.82 E-value=77 Score=23.10 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=25.7
Q ss_pred ceEEEEEcCccc-ceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEe
Q 046684 106 ILQLVLCNPFTR-QFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAG 156 (373)
Q Consensus 106 ~~~~~v~np~t~-~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~g 156 (373)
...+.+|||.|+ .|.+..+. ...+.++.+...+. ++|+-++
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~-----~~~V~~y~~~~~nt-----fRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKH-----AVTVSYFYDSTRNV-----YRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEeCCCC-----ceeEEEEecCCCcE-----EEEEEec
Confidence 457899999986 89865531 23455565555444 5555543
No 249
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=44.63 E-value=92 Score=28.96 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=42.0
Q ss_pred eeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEE
Q 046684 246 ATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMII 325 (373)
Q Consensus 246 ~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 325 (373)
..++..+.-.|+++|.....+.+|++.. + .|-... ...+... ....+..+|..++.++.++.|.+
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelss----G------~LL~v~-~aHYQ~I----TcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSS----G------ILLNVL-SAHYQSI----TCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEecc----c------cHHHHH-Hhhccce----eEEEEeCCCcEEEecCCCccEEE
Confidence 3455566677777775555689999976 2 221111 1111111 23334457788888888888999
Q ss_pred EEcc
Q 046684 326 WRED 329 (373)
Q Consensus 326 yd~~ 329 (373)
|++.
T Consensus 150 W~l~ 153 (476)
T KOG0646|consen 150 WLLT 153 (476)
T ss_pred EEEE
Confidence 8775
No 250
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=44.41 E-value=2.4e+02 Score=25.37 Aligned_cols=122 Identities=12% Similarity=0.137 Sum_probs=59.3
Q ss_pred cCCceEEEEEECCCCcE-EecccCCCCCCCceeEEEE-CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhh
Q 046684 216 SARAYSVIGFDIESNTW-RELSAPMADRLEFATLVSR-NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMR 293 (373)
Q Consensus 216 g~~~~~i~~yd~~~~~w-~~~~~~~p~~~~~~~~~~~-~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~ 293 (373)
+...+.+-.||+.+.+- ... .-+|....+...... .....+.++ .+..+.+|+.... .++..+......
T Consensus 46 ~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~s-sDG~Vr~wD~Rs~------~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCS-SDGTVRLWDIRSQ------AESARISWTQQS- 116 (376)
T ss_pred EecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEec-cCCeEEEEEeecc------hhhhheeccCCC-
Confidence 35667888999988543 223 222333333333333 223333333 3334789998651 111111111100
Q ss_pred hcCCCCCCCceEEEec--CCEEEEEEc----CCccEEEEEccccCCcccEEE-ecccccCCCCcccccceeEEEeccc
Q 046684 294 LSGGKASWGGTRCAAG--NGAICLYRE----VGLGMIIWREDEDKRKWEWVW-VGGCCLTGGKQVQNVPMRGVLLHPS 364 (373)
Q Consensus 294 ~~~~~~~~~~~~~~~~--~~~i~~~~~----~~~~~~~yd~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~p~ 364 (373)
+ -++.|... ++.|+..|. ....++.||.+ .|.. +...--.-.+. ...+.|.|+
T Consensus 117 --~-----~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR------~~qq~l~~~~eSH~DD-----VT~lrFHP~ 176 (376)
T KOG1188|consen 117 --G-----TPFICLDLNCKKNIIACGTELTRSDASVVLWDVR------SEQQLLRQLNESHNDD-----VTQLRFHPS 176 (376)
T ss_pred --C-----CcceEeeccCcCCeEEeccccccCceEEEEEEec------cccchhhhhhhhccCc-----ceeEEecCC
Confidence 0 04566665 466776662 23468899999 5565 33332233333 344556665
No 251
>PTZ00420 coronin; Provisional
Probab=43.47 E-value=3.3e+02 Score=26.75 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=17.4
Q ss_pred cCCEEEEEEcCCccEEEEEccccCC
Q 046684 309 GNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 309 ~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.++.+++.++..+.+.+||++ ++
T Consensus 177 pdG~lLat~s~D~~IrIwD~R--sg 199 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPR--KQ 199 (568)
T ss_pred CCCCEEEEEecCCEEEEEECC--CC
Confidence 356677777666789999999 66
No 252
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=43.41 E-value=2.3e+02 Score=24.98 Aligned_cols=220 Identities=11% Similarity=0.096 Sum_probs=99.0
Q ss_pred eeEEEEeCCCCCcccc-CCCCCCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccceecc-CCCCCCCCCCeEEEEEcC
Q 046684 63 LCCYVHNPVSDKWHVL-SLDFLPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQFRYL-PLLNVSRTNPAVGIVMEG 140 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w~~l-p~~~~~~~~~~~~~~~~~ 140 (373)
..+.+||..+.+-.+. ..... ......-......++.+.......+...+..+|+..+- +-... .+..+...
T Consensus 36 Dsl~LYd~~~g~~~~ti~skky-G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~-----~V~sL~~s 109 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKY-GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK-----RVNSLSVS 109 (311)
T ss_pred CeEEEEEcCCCceeeEeecccc-cccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc-----eEEEEEec
Confidence 4666799877654332 21111 11111112222222333322245677778888876542 22111 11111111
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCC
Q 046684 141 PAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSAR 218 (373)
Q Consensus 141 ~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~ 218 (373)
.. +-.|+-+..+ ..+..+|.++.+=+-+-.. ....++.+ .|.++.++. .
T Consensus 110 P~-------~d~FlS~S~D----------~tvrLWDlR~~~cqg~l~~-----------~~~pi~AfDp~GLifA~~~-~ 160 (311)
T KOG1446|consen 110 PK-------DDTFLSSSLD----------KTVRLWDLRVKKCQGLLNL-----------SGRPIAAFDPEGLIFALAN-G 160 (311)
T ss_pred CC-------CCeEEecccC----------CeEEeeEecCCCCceEEec-----------CCCcceeECCCCcEEEEec-C
Confidence 11 3355555443 4677888875543322222 11222334 367777753 3
Q ss_pred ceEEEEEECCC---CcEEecccCCCCCCCceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCC-eEEEEeechhhhhh
Q 046684 219 AYSVIGFDIES---NTWRELSAPMADRLEFATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDI-WCLIEKVPIEMGMR 293 (373)
Q Consensus 219 ~~~i~~yd~~~---~~w~~~~~~~p~~~~~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~-W~~v~~~p~~~~~~ 293 (373)
...|-.||... +-++....+.+.......+ ..-+|+..++..... .++.++.+ ++. =..+...+.....
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf--~G~~~~tfs~~~~~~~~- 234 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAF--DGTVKSTFSGYPNAGNL- 234 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEcc--CCcEeeeEeeccCCCCc-
Confidence 33788888753 3344441221111111111 223566666554332 24444442 111 1111112211100
Q ss_pred hcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 294 LSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
...+++.-+++.++.|..++.+.+|+.+ ++
T Consensus 235 --------~~~a~ftPds~Fvl~gs~dg~i~vw~~~--tg 264 (311)
T KOG1446|consen 235 --------PLSATFTPDSKFVLSGSDDGTIHVWNLE--TG 264 (311)
T ss_pred --------ceeEEECCCCcEEEEecCCCcEEEEEcC--CC
Confidence 0244455677777777777889999999 87
No 253
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=42.08 E-value=2.9e+02 Score=25.63 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=63.2
Q ss_pred EECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE-EEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684 206 CTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL-VSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE 284 (373)
Q Consensus 206 ~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~-~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~ 284 (373)
..+|.+-.-||. ...-.++|+.++.--.+ ..- ....-+++ ..-+|.....|+.++ .+.||++.. . ..+.
T Consensus 312 ~~DGSL~~tGGl-D~~~RvWDlRtgr~im~-L~g-H~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~--r----~~ly 381 (459)
T KOG0272|consen 312 QPDGSLAATGGL-DSLGRVWDLRTGRCIMF-LAG-HIKEILSVAFSPNGYHLATGSSDN-TCKVWDLRM--R----SELY 381 (459)
T ss_pred cCCCceeeccCc-cchhheeecccCcEEEE-ecc-cccceeeEeECCCceEEeecCCCC-cEEEeeecc--c----ccce
Confidence 357888888653 23334556666544333 111 11111122 223666666555444 469999975 2 2256
Q ss_pred eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCc
Q 046684 285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQ 350 (373)
Q Consensus 285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~ 350 (373)
.||.-..- +.........|..++..++++.+-+|..+ .|..+.. +.++..
T Consensus 382 ~ipAH~nl--------VS~Vk~~p~~g~fL~TasyD~t~kiWs~~------~~~~~ks--LaGHe~ 431 (459)
T KOG0272|consen 382 TIPAHSNL--------VSQVKYSPQEGYFLVTASYDNTVKIWSTR------TWSPLKS--LAGHEG 431 (459)
T ss_pred ecccccch--------hhheEecccCCeEEEEcccCcceeeecCC------Ccccchh--hcCCcc
Confidence 66642211 00122222467777777777778888877 7776655 445543
No 254
>PRK10115 protease 2; Provisional
Probab=41.01 E-value=4e+02 Score=26.96 Aligned_cols=122 Identities=11% Similarity=0.042 Sum_probs=62.3
Q ss_pred EEeeCcEEEEeeCC-CCceEEEEEcCc-ccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCc
Q 046684 90 VSSIGSFLLLRPIN-STILQLVLCNPF-TRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGAT 167 (373)
Q Consensus 90 ~~~~~g~l~~~gg~-~~~~~~~v~np~-t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~ 167 (373)
....++.+|+.... .....+...+.. +++|+.+-+......--.+.+.. +.+++..-. .
T Consensus 275 ~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-----------~~l~~~~~~--------~ 335 (686)
T PRK10115 275 LDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-----------DWLVVEERQ--------R 335 (686)
T ss_pred EEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-----------CEEEEEEEe--------C
Confidence 34456778876643 234457777766 57787764332211111222222 666665422 2
Q ss_pred ccceEEEEECCCCceeeec-CCCccccccceeccCCceEEECCEEEEEE--cCCceEEEEEECCCCcEEec
Q 046684 168 YESMVEMYDSRHDAWQIIG-SMPVEFAVRLTVWTPNESVCTRGMLYWIT--SARAYSVIGFDIESNTWREL 235 (373)
Q Consensus 168 ~~~~~~~yd~~~~~W~~~~-~~p~~~~~~~~~~~~~~~~~~~g~ly~~g--g~~~~~i~~yd~~~~~w~~~ 235 (373)
....+.+++..++..+.+. ..|.. ..........-++.+++.. ......++.||+.+++++.+
T Consensus 336 g~~~l~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l 401 (686)
T PRK10115 336 GLTSLRQINRKTREVIGIAFDDPAY-----VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVL 401 (686)
T ss_pred CEEEEEEEcCCCCceEEecCCCCce-----EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEE
Confidence 2456888887666555544 22210 0000000001124444443 23467899999999988877
No 255
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=40.38 E-value=2.9e+02 Score=25.27 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=25.5
Q ss_pred eEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecccccCC
Q 046684 304 TRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTG 347 (373)
Q Consensus 304 ~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~ 347 (373)
..+...++..++-+++++.+..+|.+ ++ +.+..|+++.
T Consensus 198 S~isl~~~~~LlS~sGD~tlr~Wd~~--sg----k~L~t~dl~s 235 (390)
T KOG3914|consen 198 STISLTDNYLLLSGSGDKTLRLWDIT--SG----KLLDTCDLSS 235 (390)
T ss_pred eeeeeccCceeeecCCCCcEEEEecc--cC----CcccccchhH
Confidence 33444566667777777889999999 77 5555555443
No 256
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.98 E-value=4.1e+02 Score=26.77 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=54.1
Q ss_pred ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCc---e
Q 046684 106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDA---W 182 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~---W 182 (373)
.+.+..|+|.+++...+=..+. +-.++...+.. .+.|+-|..+ ..+-+++....+ |
T Consensus 389 DKTVRLWh~~~~~CL~~F~Hnd----fVTcVaFnPvD-------DryFiSGSLD----------~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 389 DKTVRLWHPGRKECLKVFSHND----FVTCVAFNPVD-------DRYFISGSLD----------GKVRLWSISDKKVVDW 447 (712)
T ss_pred cccEEeecCCCcceeeEEecCC----eeEEEEecccC-------CCcEeecccc----------cceEEeecCcCeeEee
Confidence 4567888888776544311111 12222223322 4456666554 356777776654 7
Q ss_pred eeecCCCccccccceeccCCceEE-ECCEEEEEEcCCceEEEEEECCCCcEEe
Q 046684 183 QIIGSMPVEFAVRLTVWTPNESVC-TRGMLYWITSARAYSVIGFDIESNTWRE 234 (373)
Q Consensus 183 ~~~~~~p~~~~~~~~~~~~~~~~~-~~g~ly~~gg~~~~~i~~yd~~~~~w~~ 234 (373)
..+..+ . .++++ -+|+.-++| ...+....|+....+...
T Consensus 448 ~Dl~~l-------I-----TAvcy~PdGk~avIG-t~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 448 NDLRDL-------I-----TAVCYSPDGKGAVIG-TFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred hhhhhh-------h-----eeEEeccCCceEEEE-EeccEEEEEEccCCeEEE
Confidence 777665 1 12222 368877774 567778889988776643
No 257
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=39.21 E-value=4.5e+02 Score=27.10 Aligned_cols=121 Identities=12% Similarity=0.174 Sum_probs=54.5
Q ss_pred EEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEE
Q 046684 205 VCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLI 283 (373)
Q Consensus 205 ~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v 283 (373)
+..+|+..++| .....|-..+.....-...-.....+. .++-- -++.+..+. ..+..+.||++++.-....|..+
T Consensus 104 v~g~g~~iaag-sdD~~vK~~~~~D~s~~~~lrgh~apV--l~l~~~p~~~fLAvs-s~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 104 VSGSGKMIAAG-SDDTAVKLLNLDDSSQEKVLRGHDAPV--LQLSYDPKGNFLAVS-SCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred EecCCcEEEee-cCceeEEEEeccccchheeecccCCce--eeeeEcCCCCEEEEE-ecCceEEEEEcccchhhhhcccC
Confidence 33456677765 444555555554433222201111111 11111 134443333 34444789998762223345544
Q ss_pred EeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684 284 EKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 284 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
..-......+. +...+..-.++.+.+.. ..+.|.+|+.+ .|...-.
T Consensus 180 ~k~n~~~~s~i------~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~------~we~~f~ 225 (933)
T KOG1274|consen 180 DKDNEFILSRI------CTRLAWHPKGGTLAVPP-VDNTVKVYSRK------GWELQFK 225 (933)
T ss_pred Cccccccccce------eeeeeecCCCCeEEeec-cCCeEEEEccC------Cceehee
Confidence 33221111110 11233333456666654 34478999988 7775443
No 258
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.05 E-value=5.2e+02 Score=27.49 Aligned_cols=149 Identities=14% Similarity=0.143 Sum_probs=72.3
Q ss_pred eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684 92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM 171 (373)
Q Consensus 92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~ 171 (373)
-..|.+++.|+ .+.+.+||..+.+-. ..+|.... ..+..+. +...+ +.+++.|-.+ ..
T Consensus 1175 Q~~G~Ll~tGd---~r~IRIWDa~~E~~~--~diP~~s~-t~vTaLS-~~~~~-----gn~i~AGfaD----------Gs 1232 (1387)
T KOG1517|consen 1175 QQSGHLLVTGD---VRSIRIWDAHKEQVV--ADIPYGSS-TLVTALS-ADLVH-----GNIIAAGFAD----------GS 1232 (1387)
T ss_pred hhCCeEEecCC---eeEEEEEecccceeE--eecccCCC-ccceeec-ccccC-----CceEEEeecC----------Cc
Confidence 35788888887 678899998876532 23333221 1222222 11111 5677777443 24
Q ss_pred EEEEECCC-------CceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC---cEEecccCCCC
Q 046684 172 VEMYDSRH-------DAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN---TWRELSAPMAD 241 (373)
Q Consensus 172 ~~~yd~~~-------~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~---~w~~~~~~~p~ 241 (373)
+-+||-+. ..|++-...+. ..+....-+|.-.++.|...+.|..+|+..+ +...+..+...
T Consensus 1233 vRvyD~R~a~~ds~v~~~R~h~~~~~---------Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1233 VRVYDRRMAPPDSLVCVYREHNDVEP---------IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred eEEeecccCCccccceeecccCCccc---------ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 67777543 34554443310 1111122234444555566778888888764 11111011100
Q ss_pred CCCceeEEEECCE-EEEEEeecCCceEEEEeec
Q 046684 242 RLEFATLVSRNQK-LTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 242 ~~~~~~~~~~~g~-l~~~gg~~~~~~~i~~~~~ 273 (373)
+..-..+.+.... |+..|+ . ..+.||.+.-
T Consensus 1304 Gs~lTal~VH~hapiiAsGs-~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGS-A-QLIKIYSLSG 1334 (1387)
T ss_pred CccceeeeeccCCCeeeecC-c-ceEEEEecCh
Confidence 1111234444333 444433 3 4578998865
No 259
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=37.92 E-value=2.2e+02 Score=23.16 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=39.2
Q ss_pred CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC--ceEEEEeecCCCCCCeEEEEee
Q 046684 209 GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG--DACVWELSEGGDDDIWCLIEKV 286 (373)
Q Consensus 209 g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~--~~~i~~~~~~~~~~~W~~v~~~ 286 (373)
..+.++.|.....+..||++.+.-..+ +......-.-.-+|+..+++|..+. .+++|+.+ ..+.+...
T Consensus 72 ~~favi~g~~~~~v~lyd~~~~~i~~~----~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~------~~~~i~~~ 141 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVKGKKIFSF----GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR------KKKKISTF 141 (194)
T ss_pred CEEEEEEccCCcccEEEcCcccEeEee----cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC------CCEEeecc
Confidence 345555455566899999974443333 2211122222347888888776543 38899884 45555554
Q ss_pred c
Q 046684 287 P 287 (373)
Q Consensus 287 p 287 (373)
.
T Consensus 142 ~ 142 (194)
T PF08662_consen 142 E 142 (194)
T ss_pred c
Confidence 3
No 260
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=37.25 E-value=2.3e+02 Score=28.30 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=59.6
Q ss_pred CC-EEEEEEcCCceEEEEEECCCCcEEecccCCCC-C-CCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEE
Q 046684 208 RG-MLYWITSARAYSVIGFDIESNTWRELSAPMAD-R-LEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIE 284 (373)
Q Consensus 208 ~g-~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~-~-~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~ 284 (373)
|| .||.. ..+.|..-|.++++-. ++..-+. . .........+ ..+++......-+++|.+...--.+.|+.++
T Consensus 30 nG~~L~t~---~~d~Vi~idv~t~~~~-l~s~~~ed~d~ita~~l~~d-~~~L~~a~rs~llrv~~L~tgk~irswKa~H 104 (775)
T KOG0319|consen 30 NGQHLYTA---CGDRVIIIDVATGSIA-LPSGSNEDEDEITALALTPD-EEVLVTASRSQLLRVWSLPTGKLIRSWKAIH 104 (775)
T ss_pred CCCEEEEe---cCceEEEEEccCCcee-cccCCccchhhhheeeecCC-ccEEEEeeccceEEEEEcccchHhHhHhhcc
Confidence 44 46655 4567888899888774 2111111 1 1122223334 3344443444457899998722223466655
Q ss_pred eechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCCccc
Q 046684 285 KVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWE 336 (373)
Q Consensus 285 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~ 336 (373)
+-|.- ...+...+.++..||..+.+-++|.+ .+.|+
T Consensus 105 e~Pvi--------------~ma~~~~g~LlAtggaD~~v~VWdi~--~~~~t 140 (775)
T KOG0319|consen 105 EAPVI--------------TMAFDPTGTLLATGGADGRVKVWDIK--NGYCT 140 (775)
T ss_pred CCCeE--------------EEEEcCCCceEEeccccceEEEEEee--CCEEE
Confidence 55542 22222345788888888888888888 66333
No 261
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=36.54 E-value=3.6e+02 Score=25.22 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=37.5
Q ss_pred CcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCC
Q 046684 166 ATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESN 230 (373)
Q Consensus 166 ~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~ 230 (373)
+...+.++++|..-+-=-++..+.. ..| -.++-+.++.+|++.-+...-+.+.|+.+-
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~------gER-IYAvRf~gdv~yiVTfrqtDPlfviDlsNP 459 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAP------GER-IYAVRFVGDVLYIVTFRQTDPLFVIDLSNP 459 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCC------Cce-EEEEEEeCceEEEEEEeccCceEEEEcCCC
Confidence 3345778888887776666666521 111 123445678899987666677888888754
No 262
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=36.41 E-value=3.4e+02 Score=24.90 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=67.3
Q ss_pred ceEEEEEcCcccceeccCCCCCCCCCC-eEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceee
Q 046684 106 ILQLVLCNPFTRQFRYLPLLNVSRTNP-AVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQI 184 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~lp~~~~~~~~~-~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~ 184 (373)
...+.+||+.|.+ |........+ ..++.-. +|+|.++-|..+ ..+.+||+++++ ..
T Consensus 136 D~TvR~WD~~TeT----p~~t~KgH~~WVlcvaws--------PDgk~iASG~~d----------g~I~lwdpktg~-~~ 192 (480)
T KOG0271|consen 136 DTTVRLWDLDTET----PLFTCKGHKNWVLCVAWS--------PDGKKIASGSKD----------GSIRLWDPKTGQ-QI 192 (480)
T ss_pred CceEEeeccCCCC----cceeecCCccEEEEEEEC--------CCcchhhccccC----------CeEEEecCCCCC-cc
Confidence 5678889998864 3333222222 2222221 226777766554 578899988764 12
Q ss_pred ecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCC
Q 046684 185 IGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGG 264 (373)
Q Consensus 185 ~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~ 264 (373)
...++.- .-..........-...+.-++..+...+.+.++|+..++-... +..+-...+++.-+|.=++..|..+.
T Consensus 193 g~~l~gH-~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~---lsgHT~~VTCvrwGG~gliySgS~Dr 268 (480)
T KOG0271|consen 193 GRALRGH-KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT---LSGHTASVTCVRWGGEGLIYSGSQDR 268 (480)
T ss_pred cccccCc-ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE---eccCccceEEEEEcCCceEEecCCCc
Confidence 2222100 0000000000000001111333233456677777766554333 12222333455567776776666666
Q ss_pred ceEEEEeec
Q 046684 265 DACVWELSE 273 (373)
Q Consensus 265 ~~~i~~~~~ 273 (373)
.+.+|+-.+
T Consensus 269 tIkvw~a~d 277 (480)
T KOG0271|consen 269 TIKVWRALD 277 (480)
T ss_pred eEEEEEccc
Confidence 688998754
No 263
>PRK10115 protease 2; Provisional
Probab=36.39 E-value=4.7e+02 Score=26.46 Aligned_cols=120 Identities=8% Similarity=0.039 Sum_probs=62.7
Q ss_pred EECCEEEEEEc--CCceEEEEEECC-CCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEE
Q 046684 206 CTRGMLYWITS--ARAYSVIGFDIE-SNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCL 282 (373)
Q Consensus 206 ~~~g~ly~~gg--~~~~~i~~yd~~-~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~ 282 (373)
..++.+|+... .....+...++. .++|+.+ .+......-..+...++.|++.....+.. .++.++. .+.....
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l-~~~~~~~~i~~~~~~~~~l~~~~~~~g~~-~l~~~~~--~~~~~~~ 352 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEEL-IPPRENIMLEGFTLFTDWLVVEERQRGLT-SLRQINR--KTREVIG 352 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEE-ECCCCCCEEEEEEEECCEEEEEEEeCCEE-EEEEEcC--CCCceEE
Confidence 34578888862 235578888887 6789988 55422222224445578887776544433 4555543 2233322
Q ss_pred EEeechhhhhhhcCCCCCCCceEEE--ecCCEEEEEE-c--CCccEEEEEccccCCcccEEEeccc
Q 046684 283 IEKVPIEMGMRLSGGKASWGGTRCA--AGNGAICLYR-E--VGLGMIIWREDEDKRKWEWVWVGGC 343 (373)
Q Consensus 283 v~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~-~--~~~~~~~yd~~~~~~~~~W~~~~~~ 343 (373)
+. ++.+.... ..... ..++.+++.- . ....++.||++ ++ +|+.+...
T Consensus 353 l~-~~~~~~~~---------~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~--~~--~~~~l~~~ 404 (686)
T PRK10115 353 IA-FDDPAYVT---------WIAYNPEPETSRLRYGYSSMTTPDTLFELDMD--TG--ERRVLKQT 404 (686)
T ss_pred ec-CCCCceEe---------eecccCCCCCceEEEEEecCCCCCEEEEEECC--CC--cEEEEEec
Confidence 21 11111000 00011 1224454432 2 22569999999 88 88776543
No 264
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=35.65 E-value=14 Score=23.18 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=12.4
Q ss_pred CCCcchHHHHHHHHhc
Q 046684 1 MWSNLHLDVLANIFSF 16 (373)
Q Consensus 1 ~~~~Lp~dll~~Il~r 16 (373)
|+..|||||-.++|..
T Consensus 7 lfqkLPDdLKrEvldY 22 (65)
T COG5559 7 LFQKLPDDLKREVLDY 22 (65)
T ss_pred HHHHCcHHHHHHHHHH
Confidence 3567899999888864
No 265
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=35.49 E-value=2.6e+02 Score=23.22 Aligned_cols=155 Identities=11% Similarity=0.185 Sum_probs=72.1
Q ss_pred EECCCCceeeecCCCcccccccee-ccCCceEEECCEEEEEEcCC------ceEEEEEECCCCcEEecccCC----CCC-
Q 046684 175 YDSRHDAWQIIGSMPVEFAVRLTV-WTPNESVCTRGMLYWITSAR------AYSVIGFDIESNTWRELSAPM----ADR- 242 (373)
Q Consensus 175 yd~~~~~W~~~~~~p~~~~~~~~~-~~~~~~~~~~g~ly~~gg~~------~~~i~~yd~~~~~w~~~~~~~----p~~- 242 (373)
-++-+++|.+...+-.. -.. ..-......+|++|.+-.+. ...|+.-.+ .+-|+.-..|. |.-
T Consensus 111 anpltg~w~ekgqikt~----wesfsldattfeh~gk~yyvwaqkdp~i~gnsniyiaem-enpwtikgepvmlskpe~d 185 (324)
T COG3940 111 ANPLTGNWVEKGQIKTA----WESFSLDATTFEHNGKLYYVWAQKDPNIKGNSNIYIAEM-ENPWTIKGEPVMLSKPELD 185 (324)
T ss_pred CCCCcccceecceeccc----hhcceeeeeeeeeCCEEEEEEeccCCCccCCcceEEEec-cCCceecCceEEecCCCcc
Confidence 35678999887765211 111 11123456789988875221 123333333 34565431111 111
Q ss_pred --------CCceeEEEECCEEEEEEeecCCc-----eEEEEeec--CCCCCCeEEEEeechhhhhhhcCCCCCCCceEEE
Q 046684 243 --------LEFATLVSRNQKLTLIGGTCGGD-----ACVWELSE--GGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCA 307 (373)
Q Consensus 243 --------~~~~~~~~~~g~l~~~gg~~~~~-----~~i~~~~~--~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~ 307 (373)
..+..++..+|+|++.-...... -.+|.-.. ..+..+|++-. .+.+........ .
T Consensus 186 we~~gfwvnegpav~k~ngkifi~ysasatd~nycmgllwanen~dlldpaswtksp---tpvf~ts~en~q-------y 255 (324)
T COG3940 186 WEIKGFWVNEGPAVLKKNGKIFITYSASATDVNYCMGLLWANENSDLLDPASWTKSP---TPVFKTSMENHQ-------Y 255 (324)
T ss_pred cEEEEEEecCCceEEEECCEEEEEEeccccccceeeeeeeecccCCcCCchhcccCC---Ccceeeehhccc-------c
Confidence 13445667799999875433322 22343221 12445687632 222221111110 0
Q ss_pred ecC-CEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCc
Q 046684 308 AGN-GAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQ 350 (373)
Q Consensus 308 ~~~-~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~ 350 (373)
+.| +..-+...+..++++|+.+ ..+.+.+.|+-....
T Consensus 256 gpghnsftvtedgkhdvlvyhar------nyteiegdplydpnr 293 (324)
T COG3940 256 GPGHNSFTVTEDGKHDVLVYHAR------NYTEIEGDPLYDPNR 293 (324)
T ss_pred CCCCCceEecCCCcccEEEEecc------ccccccCCcCcCCCc
Confidence 111 1111222233467788877 557777777655543
No 266
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.85 E-value=3.3e+02 Score=24.18 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=71.8
Q ss_pred ceEEEEECCCCc----eeeecCCCccccccceeccCCceEE---ECCEEEEEE--cCCceEEEEEECCCCcEEecccCCC
Q 046684 170 SMVEMYDSRHDA----WQIIGSMPVEFAVRLTVWTPNESVC---TRGMLYWIT--SARAYSVIGFDIESNTWRELSAPMA 240 (373)
Q Consensus 170 ~~~~~yd~~~~~----W~~~~~~p~~~~~~~~~~~~~~~~~---~~g~ly~~g--g~~~~~i~~yd~~~~~w~~~~~~~p 240 (373)
+.+..||.+.++ |++.-.-+. ..-.-.+-.. +++.|++.. |...-.++..|..++.-+.+ ..-|
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~------~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L-~~~p 150 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKT------KWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKL-SSNP 150 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCcc------ccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeec-cCCC
Confidence 467778877765 554433221 1111111122 357888876 45567899999999988887 4443
Q ss_pred CCCCceeEEEECCEEEEEEee--cCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCC-CCCCceEEEecCCEEEEEE
Q 046684 241 DRLEFATLVSRNQKLTLIGGT--CGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGK-ASWGGTRCAAGNGAICLYR 317 (373)
Q Consensus 241 ~~~~~~~~~~~~g~l~~~gg~--~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~ 317 (373)
... +....+-..+-+... ....+.++++.+ .+|.. ...+.... ..+.. .-+..-.++...+++|.+-
T Consensus 151 s~K---G~~~~D~a~F~i~~~~~g~~~i~~~Dli~----~~~~~-e~f~~~~s--~Dg~~~~~~~~G~~~s~ynR~faF~ 220 (339)
T PF09910_consen 151 SLK---GTLVHDYACFGINNFHKGVSGIHCLDLIS----GKWVI-ESFDVSLS--VDGGPVIRPELGAMASAYNRLFAFV 220 (339)
T ss_pred CcC---ceEeeeeEEEeccccccCCceEEEEEccC----CeEEE-EecccccC--CCCCceEeeccccEEEEeeeEEEEE
Confidence 332 122223333322111 112278888866 99944 33332221 11110 0111233344456666654
Q ss_pred cCCccEEEEEcc
Q 046684 318 EVGLGMIIWRED 329 (373)
Q Consensus 318 ~~~~~~~~yd~~ 329 (373)
+. .+++.||.
T Consensus 221 rG--Gi~vgnP~ 230 (339)
T PF09910_consen 221 RG--GIFVGNPY 230 (339)
T ss_pred ec--cEEEeCCC
Confidence 33 38888887
No 267
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=34.70 E-value=3.3e+02 Score=24.26 Aligned_cols=113 Identities=11% Similarity=-0.004 Sum_probs=59.8
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEeccc-------CCCCCCCceeEEEECCEEEEEEeecCC------------ceEE
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSA-------PMADRLEFATLVSRNQKLTLIGGTCGG------------DACV 268 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~-------~~p~~~~~~~~~~~~g~l~~~gg~~~~------------~~~i 268 (373)
++.||.. .-...+|.+||- +|..+.. .+|..-.-+.+..++++||+.-...+. .+++
T Consensus 151 ~~~LYaa-dF~~g~IDVFd~---~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 151 GDYLYAA-NFRQGRIDVFKG---SFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNV 226 (336)
T ss_pred CceEEEe-ccCCCceEEecC---ccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEE
Confidence 3556665 234677888864 3443311 123333345688899999997543221 1778
Q ss_pred EEeecCCCCCCeEEEEeec-hhhhhhhcCCCC-CCCceEEEecCCEEEEEEcCCccEEEEEccccCCcccEE
Q 046684 269 WELSEGGDDDIWCLIEKVP-IEMGMRLSGGKA-SWGGTRCAAGNGAICLYREVGLGMIIWREDEDKRKWEWV 338 (373)
Q Consensus 269 ~~~~~~~~~~~W~~v~~~p-~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~W~ 338 (373)
|+++- . .+.++. ...+.. ... ...+..+-...+.|++-+-.++.|-+||+. +. ++.
T Consensus 227 Fd~~G-----~--l~~r~as~g~LNa---PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~--sG--~~~ 284 (336)
T TIGR03118 227 FTLNG-----Q--LLRRVASSGRLNA---PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ--SG--AQL 284 (336)
T ss_pred EcCCC-----c--EEEEeccCCcccC---CceeeeChhhhCCCCCCeEEeecCCceeEEecCC--CC--cee
Confidence 88763 2 222221 111110 000 000122222457788866667889999999 88 654
No 268
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=34.03 E-value=5.3e+02 Score=26.39 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=32.4
Q ss_pred cCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEE
Q 046684 216 SARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCL 282 (373)
Q Consensus 216 g~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~ 282 (373)
|...+.|..||+..++--.- ...+.++........+|.=.++.|.....+.+|+++. ....|..
T Consensus 220 G~~~G~ViifNlK~dkil~s-Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~--kkl~~v~ 283 (910)
T KOG1539|consen 220 GLENGTVIIFNLKFDKILMS-FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK--KKLINVT 283 (910)
T ss_pred eccCceEEEEEcccCcEEEE-EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC--Ceeeeee
Confidence 34455666666665543211 1111122222223345665566555555689999987 4444444
No 269
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=32.55 E-value=1.9e+02 Score=22.16 Aligned_cols=60 Identities=18% Similarity=0.417 Sum_probs=33.1
Q ss_pred CceEEEEEECCCCcEEecccCCCCCCCceeEEEE---CCEEEEEEeecCCceEEEEeecCCCCCCeEE
Q 046684 218 RAYSVIGFDIESNTWRELSAPMADRLEFATLVSR---NQKLTLIGGTCGGDACVWELSEGGDDDIWCL 282 (373)
Q Consensus 218 ~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~---~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~ 282 (373)
....+++||.+.|.=--. ..++.......+..+ .+.|.++||.+ .|+-++..|.+.=|+.
T Consensus 71 t~t~llaYDV~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGnc----si~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 71 TQTSLLAYDVENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNC----SIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccceEEEEEcccCchhhh-hhCccceeEEEEEecCCCCCcEEEECceE----EEEEeCCCCcEEEEEe
Confidence 468899999998752222 233333332223333 45688888765 4555554334444654
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=32.10 E-value=4.3e+02 Score=24.77 Aligned_cols=64 Identities=6% Similarity=-0.144 Sum_probs=33.6
Q ss_pred eeEEEEeCCCCCccccCCCCCCCCceeEEeeCc--EEE-EeeCCCCceEEEEEcCcccceeccCCCCC
Q 046684 63 LCCYVHNPVSDKWHVLSLDFLPYPVRPVSSIGS--FLL-LRPINSTILQLVLCNPFTRQFRYLPLLNV 127 (373)
Q Consensus 63 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~g--~l~-~~gg~~~~~~~~v~np~t~~w~~lp~~~~ 127 (373)
..++..|.....-..++....+.... .-+-+| +.+ .+........+++.|..+++-+++...+.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP-~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g 231 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITP-TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG 231 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccc-eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC
Confidence 57777776655444443221111111 223333 212 22322335789999999988777766544
No 271
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=31.90 E-value=2.9e+02 Score=28.57 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=73.3
Q ss_pred EECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe
Q 046684 206 CTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK 285 (373)
Q Consensus 206 ~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~ 285 (373)
..++...++| .....+..+|..+.+=... ... .-.+..+...+++...+|...+ .|.-.+. ++.+.+..
T Consensus 144 ~~~~~~~i~G-g~Q~~li~~Dl~~~~e~r~-~~v--~a~~v~imR~Nnr~lf~G~t~G---~V~LrD~----~s~~~iht 212 (1118)
T KOG1275|consen 144 HMGPSTLIMG-GLQEKLIHIDLNTEKETRT-TNV--SASGVTIMRYNNRNLFCGDTRG---TVFLRDP----NSFETIHT 212 (1118)
T ss_pred ccCCcceeec-chhhheeeeecccceeeee-eec--cCCceEEEEecCcEEEeecccc---eEEeecC----CcCceeee
Confidence 3466666664 4567799999988766554 222 1223556666888777765443 3444443 66677766
Q ss_pred echhhhhhhcCCCCCCCceEEEecCCEEEEEEcC--------CccEEEEEccccCCcccEEEecccccCCCCccccccee
Q 046684 286 VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREV--------GLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMR 357 (373)
Q Consensus 286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 357 (373)
+..-... -..+-..||.+.-.|-. +.-+-+||++ .-+.++..+++..-.
T Consensus 213 ~~aHs~s----------iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLR------mmral~PI~~~~~P~------- 269 (1118)
T KOG1275|consen 213 FDAHSGS----------ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLR------MMRALSPIQFPYGPQ------- 269 (1118)
T ss_pred eeccccc----------eeeeeccCCeEEEeecccccccccccchhhhhhhh------hhhccCCcccccCch-------
Confidence 5432110 12233345554444411 2457889999 447777766655432
Q ss_pred EEEeccccccee
Q 046684 358 GVLLHPSLACAC 369 (373)
Q Consensus 358 ~~~~~p~l~~~~ 369 (373)
-.-|.|+|.+..
T Consensus 270 flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 270 FLRFHPSLTTRL 281 (1118)
T ss_pred hhhhcccccceE
Confidence 245677776543
No 272
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=31.07 E-value=3.1e+02 Score=22.78 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=57.6
Q ss_pred CceEEECCEEEEEE----------cCCceEEEEE-----ECCCCcEEecccCCCCCCC----ceeEEEECCEEEEEEeec
Q 046684 202 NESVCTRGMLYWIT----------SARAYSVIGF-----DIESNTWRELSAPMADRLE----FATLVSRNQKLTLIGGTC 262 (373)
Q Consensus 202 ~~~~~~~g~ly~~g----------g~~~~~i~~y-----d~~~~~w~~~~~~~p~~~~----~~~~~~~~g~l~~~gg~~ 262 (373)
..+-+++|+-|+.. |.....+.+. ||-++.|..- ........ .......+|++|.+-...
T Consensus 73 peih~ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ek-gqikt~wesfsldattfeh~gk~yyvwaqk 151 (324)
T COG3940 73 PEIHFINGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEK-GQIKTAWESFSLDATTFEHNGKLYYVWAQK 151 (324)
T ss_pred cceeEEcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceec-ceeccchhcceeeeeeeeeCCEEEEEEecc
Confidence 34456788766553 1123344443 3446778765 33322222 234566799999987644
Q ss_pred CCc----eEEEEeecCCCCCCeEEEEe---echhhhhhhcCCCCCCCceEEEecCCEEEEE
Q 046684 263 GGD----ACVWELSEGGDDDIWCLIEK---VPIEMGMRLSGGKASWGGTRCAAGNGAICLY 316 (373)
Q Consensus 263 ~~~----~~i~~~~~~~~~~~W~~v~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 316 (373)
... -.||.-+. .+-|+.... +..+.+.--..++-.-.+.++...+|+||+.
T Consensus 152 dp~i~gnsniyiaem---enpwtikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ 209 (324)
T COG3940 152 DPNIKGNSNIYIAEM---ENPWTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFIT 209 (324)
T ss_pred CCCccCCcceEEEec---cCCceecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEE
Confidence 322 23554432 367887654 3333222111111112257777889999886
No 273
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=31.00 E-value=3.9e+02 Score=23.96 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCccEEEEEccccC-CcccEEEecccccCCCCcccccceeEEEeccccc
Q 046684 310 NGAICLYREVGLGMIIWREDEDK-RKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLA 366 (373)
Q Consensus 310 ~~~i~~~~~~~~~~~~yd~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 366 (373)
.+.++..|+..+.|-+||.+ + . .|..+-.. ..+ ...++++.|.+-
T Consensus 308 ~~~~LasG~tdG~V~vwdlk--~~g--n~~sv~~~---~sd-----~vNgvslnP~mp 353 (406)
T KOG2919|consen 308 KGEILASGDTDGSVRVWDLK--DLG--NEVSVTGN---YSD-----TVNGVSLNPIMP 353 (406)
T ss_pred CCceeeccCCCccEEEEecC--CCC--Cccccccc---ccc-----cccceecCcccc
Confidence 56777777778889999999 6 5 55433221 111 234677777753
No 274
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=30.54 E-value=26 Score=30.06 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=30.6
Q ss_pred CCcchHHHHHHHHhcCCh-hhHHHhhcccccchhccccccchhh
Q 046684 2 WSNLHLDVLANIFSFLSP-DSLARAKSVCSHWHTCAKLYHLHSV 44 (373)
Q Consensus 2 ~~~Lp~dll~~Il~rLP~-~~l~r~r~Vck~W~~li~~~~f~~~ 44 (373)
+.+||.+++.+||.|||= .||..+..|--.-..++++....+.
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkk 245 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKK 245 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHH
Confidence 468999999999999984 4777777665555555555444443
No 275
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=30.39 E-value=3.9e+02 Score=23.68 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=68.6
Q ss_pred eCcEEEEeeCCCCceEEEEEcCc---ccceeccCCCCCCCCCCeEEEEE-cCCCCCCCCCceEEEEEeccCCCCCCCCcc
Q 046684 93 IGSFLLLRPINSTILQLVLCNPF---TRQFRYLPLLNVSRTNPAVGIVM-EGPAQHGPFPNFRIYVAGGMSDEPRGGATY 168 (373)
Q Consensus 93 ~~g~l~~~gg~~~~~~~~v~np~---t~~w~~lp~~~~~~~~~~~~~~~-~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~ 168 (373)
.+|-.++.||. ...++.||.. .|.|..- .+..++++ ....+. ..|+-.| .+
T Consensus 57 P~gs~~aSgG~--Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~-----s~i~S~g-tD--------- 111 (338)
T KOG0265|consen 57 PDGSCFASGGS--DRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDG-----SHILSCG-TD--------- 111 (338)
T ss_pred CCCCeEeecCC--cceEEEEeccccccceeeec--------cccceeEeeeeccCC-----CEEEEec-CC---------
Confidence 36666776775 4667777743 4445422 23333333 222222 5566555 32
Q ss_pred cceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeE
Q 046684 169 ESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATL 248 (373)
Q Consensus 169 ~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~ 248 (373)
..+..||.++++=..-... +....+.....--|..-+..+.....+-.||..+..--.. .........
T Consensus 112 -k~v~~wD~~tG~~~rk~k~-------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t----~~~kyqltA 179 (338)
T KOG0265|consen 112 -KTVRGWDAETGKRIRKHKG-------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT----FENKYQLTA 179 (338)
T ss_pred -ceEEEEecccceeeehhcc-------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc----cccceeEEE
Confidence 4689999998874322111 0111110001112333334356677888999876543322 222222233
Q ss_pred EEECC--EEEEEEeecCCceEEEEeec
Q 046684 249 VSRNQ--KLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 249 ~~~~g--~l~~~gg~~~~~~~i~~~~~ 273 (373)
+..++ .=.+.||.+ +.+.+|++..
T Consensus 180 v~f~d~s~qv~sggId-n~ikvWd~r~ 205 (338)
T KOG0265|consen 180 VGFKDTSDQVISGGID-NDIKVWDLRK 205 (338)
T ss_pred EEecccccceeecccc-Cceeeecccc
Confidence 33322 223334443 3478999954
No 276
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=30.27 E-value=1.1e+02 Score=17.13 Aligned_cols=22 Identities=0% Similarity=-0.067 Sum_probs=18.2
Q ss_pred CCEEEEEEcCCccEEEEEccccCC
Q 046684 310 NGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 310 ~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
++.||+.+...+.+.++|+. +.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~--~~ 24 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTA--TN 24 (42)
T ss_pred CCEEEEEeCCCCEEEEEECC--CC
Confidence 56789888777889999998 66
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=29.89 E-value=5.3e+02 Score=25.09 Aligned_cols=40 Identities=10% Similarity=0.241 Sum_probs=30.4
Q ss_pred EECCEEEEEEeecCCc-eEEEEeecCCCCCCeEEEEeechhhh
Q 046684 250 SRNQKLTLIGGTCGGD-ACVWELSEGGDDDIWCLIEKVPIEMG 291 (373)
Q Consensus 250 ~~~g~l~~~gg~~~~~-~~i~~~~~~~~~~~W~~v~~~p~~~~ 291 (373)
-.+++..++.|..... +.+|.++. ...+|+.|..++...+
T Consensus 455 P~gdkF~vi~g~~~k~tvsfY~~e~--~~~~~~lVk~~dk~~~ 495 (698)
T KOG2314|consen 455 PHGDKFAVISGNTVKNTVSFYAVET--NIKKPSLVKELDKKFA 495 (698)
T ss_pred cCCCeEEEEEccccccceeEEEeec--CCCchhhhhhhccccc
Confidence 3478888888765543 88999987 7789999988877543
No 278
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=29.82 E-value=5.6e+02 Score=25.34 Aligned_cols=19 Identities=0% Similarity=-0.066 Sum_probs=13.4
Q ss_pred CCEEEEEEcCCccEEEEEcc
Q 046684 310 NGAICLYREVGLGMIIWRED 329 (373)
Q Consensus 310 ~~~i~~~~~~~~~~~~yd~~ 329 (373)
|..+|+-.. ++.|+.||+.
T Consensus 283 Gt~L~AsCt-D~sIy~ynm~ 301 (720)
T KOG0321|consen 283 GTYLFASCT-DNSIYFYNMR 301 (720)
T ss_pred CCeEEEEec-CCcEEEEecc
Confidence 566766544 5678888887
No 279
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=29.55 E-value=2.8e+02 Score=21.76 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=43.5
Q ss_pred eeCcEEEEeeCCCCce---EEEEEcCcccce-eccCCCCCCC-CC--CeEEEEEcCCCCCCCCCceEEEEEeccCCCCCC
Q 046684 92 SIGSFLLLRPINSTIL---QLVLCNPFTRQF-RYLPLLNVSR-TN--PAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRG 164 (373)
Q Consensus 92 ~~~g~l~~~gg~~~~~---~~~v~np~t~~w-~~lp~~~~~~-~~--~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~ 164 (373)
+.||.+|=++...... .+..+|..|.+. +.+|.+.... .. ..+.++.. +++-++...
T Consensus 3 ~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~----------~~L~~~~~~------ 66 (164)
T PF07734_consen 3 FVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRG----------DCLCVLYQC------ 66 (164)
T ss_pred EECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecC----------CEEEEEEec------
Confidence 5677777665542221 589999999999 5554433222 11 22222210 555555321
Q ss_pred CCcccceEEEEE---CCCCceeeecCC
Q 046684 165 GATYESMVEMYD---SRHDAWQIIGSM 188 (373)
Q Consensus 165 ~~~~~~~~~~yd---~~~~~W~~~~~~ 188 (373)
......++|+-+ ....+|+++-.+
T Consensus 67 ~~~~~~~IWvm~~~~~~~~SWtK~~~i 93 (164)
T PF07734_consen 67 DETSKIEIWVMKKYGYGKESWTKLFTI 93 (164)
T ss_pred cCCccEEEEEEeeeccCcceEEEEEEE
Confidence 122235666654 236789987554
No 280
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=29.12 E-value=4.2e+02 Score=23.74 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=45.0
Q ss_pred EEE-CCEEEEEEc--C----CceEEEEEECCCCcEEecccCCC-CCCCceeEEEE-CCEEEEEEeec-CCceEEEEeecC
Q 046684 205 VCT-RGMLYWITS--A----RAYSVIGFDIESNTWRELSAPMA-DRLEFATLVSR-NQKLTLIGGTC-GGDACVWELSEG 274 (373)
Q Consensus 205 ~~~-~g~ly~~gg--~----~~~~i~~yd~~~~~w~~~~~~~p-~~~~~~~~~~~-~g~l~~~gg~~-~~~~~i~~~~~~ 274 (373)
+.. +|.+.+..- . ....++.-|-...+|+......+ .......++.+ +|+|+++.... .....++.-.+
T Consensus 152 i~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D- 230 (351)
T cd00260 152 IQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRD- 230 (351)
T ss_pred EEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcC-
Confidence 444 587776641 1 12233333334578986522222 22334567777 89998887655 33455665555
Q ss_pred CCCCCeEEEEee
Q 046684 275 GDDDIWCLIEKV 286 (373)
Q Consensus 275 ~~~~~W~~v~~~ 286 (373)
...+|+.....
T Consensus 231 -~G~tWs~~~~~ 241 (351)
T cd00260 231 -MGTTWTEALGT 241 (351)
T ss_pred -CCcCcccCcCC
Confidence 66899986553
No 281
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.96 E-value=5.4e+02 Score=24.89 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=53.1
Q ss_pred EEEEEcCCceEEEEEECCCCcEEecc-cC-CCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeech
Q 046684 211 LYWITSARAYSVIGFDIESNTWRELS-AP-MADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPI 288 (373)
Q Consensus 211 ly~~gg~~~~~i~~yd~~~~~w~~~~-~~-~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~ 288 (373)
+-++ |.....|+.|+...++-+..- .. .+..........--+.||-+++.. .+..|.+.+ ..=..+..-..
T Consensus 72 ~lvl-gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~--~v~~~~~~~----~~~~~~~~~~~ 144 (541)
T KOG4547|consen 72 MLVL-GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADL--KVVYILEKE----KVIIRIWKEQK 144 (541)
T ss_pred EEEe-ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCce--eEEEEeccc----ceeeeeeccCC
Confidence 3344 667889999999988654330 11 111111111122234566555433 267777765 32222211111
Q ss_pred hhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 289 EMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
+.. ...|...++++.+++.. .+-+||++ ++
T Consensus 145 ~~~-----------~sl~is~D~~~l~~as~--~ik~~~~~--~k 174 (541)
T KOG4547|consen 145 PLV-----------SSLCISPDGKILLTASR--QIKVLDIE--TK 174 (541)
T ss_pred Ccc-----------ceEEEcCCCCEEEeccc--eEEEEEcc--Cc
Confidence 111 24556666788887655 59999999 88
No 282
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=28.37 E-value=5e+02 Score=24.36 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=25.3
Q ss_pred eEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684 247 TLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV 286 (373)
Q Consensus 247 ~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~ 286 (373)
...-.++.||++|+. ++|.+++ ++|+.++++
T Consensus 570 RA~fi~dylY~vg~~-----ev~~lde----nswe~Vge~ 600 (603)
T COG4880 570 RAFFIKDYLYLVGGN-----EVWKLDE----NSWEVVGEA 600 (603)
T ss_pred eeEEecceEEEeccc-----eeEEecc----chHhhhhhe
Confidence 455679999999984 6999987 999998764
No 283
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.78 E-value=3.9e+02 Score=22.87 Aligned_cols=43 Identities=19% Similarity=0.026 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCE
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQK 254 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~ 254 (373)
.|.||+.. .....+..+||.+++--.- ..+|..+. +.+..+|+
T Consensus 222 eG~L~Va~-~ng~~V~~~dp~tGK~L~e-iklPt~qi--tsccFgGk 264 (310)
T KOG4499|consen 222 EGNLYVAT-FNGGTVQKVDPTTGKILLE-IKLPTPQI--TSCCFGGK 264 (310)
T ss_pred CCcEEEEE-ecCcEEEEECCCCCcEEEE-EEcCCCce--EEEEecCC
Confidence 68999985 4567899999999987654 45665543 34444554
No 284
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=27.75 E-value=1.4e+02 Score=22.87 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCEEEEEEcCCccEEEEEccccCCcccEEEecccccCCCCcccccceeEEEecccccceee
Q 046684 310 NGAICLYREVGLGMIIWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLACACI 370 (373)
Q Consensus 310 ~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~ 370 (373)
-+.||+.|-++..+..|... .++..-..+..... .....|+.|-|.-.+.|.
T Consensus 22 t~llyl~gKGD~~ir~yEv~--~~~p~l~~l~~~~s-------~~~~~G~~~lPK~~~dv~ 73 (136)
T PF08954_consen 22 TNLLYLAGKGDGNIRYYEVS--DESPYLHYLSEYRS-------PEPQKGFAFLPKRACDVM 73 (136)
T ss_dssp T-EEEEEETT-S-EEEEEE---SSTTSEEEEEEE---------SS--SEEEE--GGGS-GG
T ss_pred CCEEEEEeccCcEEEEEEEc--CCCCceEEcccccc-------CCCeEeeEecCcccCCch
Confidence 46788888777889999998 44224444433222 223568999998776653
No 285
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.74 E-value=4e+02 Score=22.94 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=31.0
Q ss_pred EEECCCCcEEecc-cCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEee
Q 046684 224 GFDIESNTWRELS-APMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKV 286 (373)
Q Consensus 224 ~yd~~~~~w~~~~-~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~ 286 (373)
.-+-+.++|+... .++|...........++-|-+.+|. +.+.+|..+. ..+|+++...
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd--Nkvtlwke~~---~Gkw~~v~~~ 297 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD--NKVTLWKENV---DGKWEEVGEV 297 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCC--cEEEEEEeCC---CCcEEEcccc
Confidence 3344567887541 2233333333333334444444443 3478998864 5699998653
No 286
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=26.93 E-value=4.3e+02 Score=23.03 Aligned_cols=110 Identities=8% Similarity=0.092 Sum_probs=56.0
Q ss_pred ECCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCC-CceeEEEECC--------EEEEE--EeecCCceEEEEeecCC
Q 046684 207 TRGMLYWITSARAYSVIGFDIESNTWRELSAPMADRL-EFATLVSRNQ--------KLTLI--GGTCGGDACVWELSEGG 275 (373)
Q Consensus 207 ~~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~-~~~~~~~~~g--------~l~~~--gg~~~~~~~i~~~~~~~ 275 (373)
+...+..+.|+..+.+..||..++. ++ ..+|... .....+...+ ..+-- .|.....+..|.++.
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~--~~-~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~-- 236 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGD--KI-IQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH-- 236 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCc--ee-eccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc--
Confidence 3455666668888999999999872 11 2222211 0000011111 11110 111122367788876
Q ss_pred CCCCeEEEEeechhhhhhhcCCCCCCCceEEEe-cCCEEEEEEcCCccEEEEEccccCC
Q 046684 276 DDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAA-GNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 276 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.++.-..-.++-.+. ++ ...+.. .+++|+...|.++.+.+|+-+ +-
T Consensus 237 s~gslq~~~e~~lkn-----pG-----v~gvrIRpD~KIlATAGWD~RiRVyswr--tl 283 (323)
T KOG0322|consen 237 STGSLQIRKEITLKN-----PG-----VSGVRIRPDGKILATAGWDHRIRVYSWR--TL 283 (323)
T ss_pred ccCcccccceEEecC-----CC-----ccceEEccCCcEEeecccCCcEEEEEec--cC
Confidence 434333222221111 11 123333 388999999999999999888 55
No 287
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=26.22 E-value=4.4e+02 Score=22.98 Aligned_cols=147 Identities=14% Similarity=-0.001 Sum_probs=67.4
Q ss_pred ceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCceeee
Q 046684 106 ILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQII 185 (373)
Q Consensus 106 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~ 185 (373)
...+.+||..|++-...-..+.+.....+... +.+.++.-.. .......+.+||.+...=...
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~------------gn~~l~~tD~-----~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFG------------GNLILASTDK-----QMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeEEEeeccC------------CcEEEEEehh-----hcCcceEEEEEEccCChhhhc
Confidence 45678999999986554333332221111111 3333332221 234456788888864331111
Q ss_pred cCCCccccccceeccCCceEEEC--CEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecC
Q 046684 186 GSMPVEFAVRLTVWTPNESVCTR--GMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCG 263 (373)
Q Consensus 186 ~~~p~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~ 263 (373)
..-|.- ..+.. -.....+..+ |...+. |.....|-.||..+++=..-...... ..-..+.-..+.-|.+.+..+
T Consensus 136 s~ep~~-kI~t~-~skit~a~Wg~l~~~ii~-Ghe~G~is~~da~~g~~~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 136 SEEPYL-KIPTP-DSKITSALWGPLGETIIA-GHEDGSISIYDARTGKELVDSDEEHS-SKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred ccCceE-EecCC-ccceeeeeecccCCEEEE-ecCCCcEEEEEcccCceeeechhhhc-cccccccccCCcceEEecccC
Confidence 111100 00000 1222234433 344444 67788999999998643222011111 111122223445556666555
Q ss_pred CceEEEEeec
Q 046684 264 GDACVWELSE 273 (373)
Q Consensus 264 ~~~~i~~~~~ 273 (373)
....+|+...
T Consensus 212 ttakl~D~~t 221 (327)
T KOG0643|consen 212 TTAKLVDVRT 221 (327)
T ss_pred ccceeeeccc
Confidence 5557887754
No 288
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=25.88 E-value=6.1e+02 Score=24.46 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=42.0
Q ss_pred EEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEe-echhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEE
Q 046684 248 LVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEK-VPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIW 326 (373)
Q Consensus 248 ~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~y 326 (373)
++..++....+||.++. +.+|.++. +.-..... ++... . -.......++..+..+..+++++.|
T Consensus 450 Av~~~~~~vaVGG~Dgk-vhvysl~g----~~l~ee~~~~~h~a-~---------iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGK-VHVYSLSG----DELKEEAKLLEHRA-A---------ITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred EEcCCCCEEEEecccce-EEEEEecC----CcccceeeeecccC-C---------ceEEEECCCCcEEEEeccCCcEEEE
Confidence 34447778888887665 79999975 22222211 11111 0 0233333467777778888899999
Q ss_pred EccccCC
Q 046684 327 REDEDKR 333 (373)
Q Consensus 327 d~~~~~~ 333 (373)
|.+ ++
T Consensus 515 d~~--s~ 519 (603)
T KOG0318|consen 515 DVA--SR 519 (603)
T ss_pred Ecc--cC
Confidence 998 77
No 289
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=25.75 E-value=5.7e+02 Score=24.07 Aligned_cols=113 Identities=15% Similarity=0.038 Sum_probs=59.6
Q ss_pred cEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCc-eEEEEEeccCCCCCCCCcccceEE
Q 046684 95 SFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPN-FRIYVAGGMSDEPRGGATYESMVE 173 (373)
Q Consensus 95 g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~-~kl~~~gg~~~~~~~~~~~~~~~~ 173 (373)
..|.+....+...+++++|..+++-.+|-.....-..++ .+++ .+|+..... .....++
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps------------~spdG~~ivf~Sdr--------~G~p~I~ 309 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPS------------WSPDGSKIVFTSDR--------GGRPQIY 309 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcceecccCCccccCcc------------CCCCCCEEEEEeCC--------CCCcceE
Confidence 334444444567789999999998444322221111111 1111 344444322 2244889
Q ss_pred EEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCC--ceEEEEEECCCCc-EEec
Q 046684 174 MYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR--AYSVIGFDIESNT-WREL 235 (373)
Q Consensus 174 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--~~~i~~yd~~~~~-w~~~ 235 (373)
+||.+.+.=+.+..-. .........-+|+..++.+.. ...+..+|+.++. |+.+
T Consensus 310 ~~~~~g~~~~riT~~~--------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 310 LYDLEGSQVTRLTFSG--------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred EECCCCCceeEeeccC--------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 9988877644443321 111123344566666664321 2568899998777 8777
No 290
>PF13919 ASXH: Asx homology domain
Probab=25.26 E-value=25 Score=27.05 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.9
Q ss_pred CCcchHHHHHHHHhcCChhhH
Q 046684 2 WSNLHLDVLANIFSFLSPDSL 22 (373)
Q Consensus 2 ~~~Lp~dll~~Il~rLP~~~l 22 (373)
|+.||.|-..+||+.||..+.
T Consensus 44 w~~L~~eeq~eLl~LLP~~D~ 64 (138)
T PF13919_consen 44 WSCLPEEEQQELLKLLPEVDR 64 (138)
T ss_pred HhcCCHHHHHHHHHhCCCCCc
Confidence 788999999999999998765
No 291
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.97 E-value=7.2e+02 Score=25.02 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=55.6
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEECCEEEEEEcCCceEEEEEECCC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSARAYSVIGFDIES 229 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~~~~i~~yd~~~ 229 (373)
+.-|++.|.. ...|.++|..++.=..+=.- + ...-.+.++.-...|+..|.....|..+|+.+
T Consensus 546 Ns~Y~aTGSs---------D~tVRlWDv~~G~~VRiF~G-------H-~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 546 NSNYVATGSS---------DRTVRLWDVSTGNSVRIFTG-------H-KGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccccCCC---------CceEEEEEcCCCcEEEEecC-------C-CCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 4556665543 34677788777653322110 0 11112223333445555566778899999988
Q ss_pred CcEEecccCCCCCC--CceeEEEECCEEEEEEeecCCceEEEEeec
Q 046684 230 NTWRELSAPMADRL--EFATLVSRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 230 ~~w~~~~~~~p~~~--~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
++--.. +-.+. ...-....+|.+.+++|.+. .+.+|++..
T Consensus 609 ~~~v~~---l~~Ht~ti~SlsFS~dg~vLasgg~Dn-sV~lWD~~~ 650 (707)
T KOG0263|consen 609 GSLVKQ---LKGHTGTIYSLSFSRDGNVLASGGADN-SVRLWDLTK 650 (707)
T ss_pred Ccchhh---hhcccCceeEEEEecCCCEEEecCCCC-eEEEEEchh
Confidence 643221 11111 11122345888888887554 479999865
No 292
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=24.14 E-value=80 Score=23.00 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHhcCChhhHHHhhccc
Q 046684 3 SNLHLDVLANIFSFLSPDSLARAKSVC 29 (373)
Q Consensus 3 ~~Lp~dll~~Il~rLP~~~l~r~r~Vc 29 (373)
.++|-+|+..||.++.+..|.++=.-|
T Consensus 5 G~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 5 GDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred CCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 578999999999999999998877665
No 293
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=24.11 E-value=3e+02 Score=20.28 Aligned_cols=18 Identities=0% Similarity=-0.027 Sum_probs=14.4
Q ss_pred eEEEEEcCcccceeccCC
Q 046684 107 LQLVLCNPFTRQFRYLPL 124 (373)
Q Consensus 107 ~~~~v~np~t~~w~~lp~ 124 (373)
..+..||+.|+.|.+...
T Consensus 9 A~Vm~~d~~tk~W~P~~~ 26 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGG 26 (111)
T ss_pred EEeeEEcCCCCcEEcCCC
Confidence 568999999999976533
No 294
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=24.04 E-value=5.3e+02 Score=23.12 Aligned_cols=26 Identities=4% Similarity=0.084 Sum_probs=19.0
Q ss_pred EEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 306 CAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 306 ~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
.+...++..+.|...+.+.+||.+ +-
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~--t~ 185 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAE--TL 185 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecc--hh
Confidence 344456666668778899999999 65
No 295
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=23.74 E-value=3.9e+02 Score=26.39 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=50.5
Q ss_pred ceEEEEEcCccccee--ccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccceEEEEECCCCcee
Q 046684 106 ILQLVLCNPFTRQFR--YLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQ 183 (373)
Q Consensus 106 ~~~~~v~np~t~~w~--~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~ 183 (373)
...+.||+|..++-. +-+-....|...-..+++ ++++++-|.+ .....++.+||-++-.=+
T Consensus 741 Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacd-----------gr~viv~Gfd------k~SeRQv~~Y~Aq~l~~~ 803 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACD-----------GRIVIVVGFD------KSSERQVQMYDAQTLDLR 803 (1012)
T ss_pred CceEEEeCCCCCCCccccCCCCccCcceeEEEEec-----------CcEEEEeccc------ccchhhhhhhhhhhccCC
Confidence 467999999987631 112222223322233343 6677766663 334456788887654322
Q ss_pred eecC-----CCccccccceeccCCceEEEC-CEEEEEEcCCceEEEEEECCCCcEE
Q 046684 184 IIGS-----MPVEFAVRLTVWTPNESVCTR-GMLYWITSARAYSVIGFDIESNTWR 233 (373)
Q Consensus 184 ~~~~-----~p~~~~~~~~~~~~~~~~~~~-g~ly~~gg~~~~~i~~yd~~~~~w~ 233 (373)
.+.. -|.. ..+.+- .+ +.+++. |.....|..|.+-.++=.
T Consensus 804 pl~t~~lDvaps~----LvP~YD-----~Ds~~lflt-GKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 804 PLYTQVLDVAPSP----LVPHYD-----YDSNVLFLT-GKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred cceeeeecccCcc----cccccc-----CCCceEEEe-cCCCceEEEEEecCCCce
Confidence 2211 1110 111111 23 444544 555677888887665433
No 296
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.58 E-value=7.1e+02 Score=25.17 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=54.0
Q ss_pred CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEcccc
Q 046684 252 NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDED 331 (373)
Q Consensus 252 ~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~ 331 (373)
+++-|+ .|.-+..+.+|...+ ..--.|..+..|- ...|...+|+-.++|...+.+..|+..
T Consensus 421 DDryFi-SGSLD~KvRiWsI~d-~~Vv~W~Dl~~lI---------------TAvcy~PdGk~avIGt~~G~C~fY~t~-- 481 (712)
T KOG0283|consen 421 DDRYFI-SGSLDGKVRLWSISD-KKVVDWNDLRDLI---------------TAVCYSPDGKGAVIGTFNGYCRFYDTE-- 481 (712)
T ss_pred CCCcEe-ecccccceEEeecCc-CeeEeehhhhhhh---------------eeEEeccCCceEEEEEeccEEEEEEcc--
Confidence 444444 444444579999876 1112355554322 356666788888889888899999999
Q ss_pred CCcccEEEecccccCCCCcccccceeEEEeccccc
Q 046684 332 KRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHPSLA 366 (373)
Q Consensus 332 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 366 (373)
.. +...--.+-+...+-.+.-...||.|.|.--
T Consensus 482 ~l--k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 482 GL--KLVSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred CC--eEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence 77 3322111222211111233578888887643
No 297
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.54 E-value=4.4e+02 Score=22.04 Aligned_cols=34 Identities=26% Similarity=0.157 Sum_probs=23.5
Q ss_pred CCCCceeEEeeCcEEEEeeCCCCceEEEEEcCcccce
Q 046684 83 LPYPVRPVSSIGSFLLLRPINSTILQLVLCNPFTRQF 119 (373)
Q Consensus 83 ~~~~~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~w 119 (373)
++..-..+.+.+..+.++.. ...+++||..+++-
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~---~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITS---SGLLYVWNLKKGKA 44 (219)
T ss_pred cCCceEEEEeCCCEEEEEeC---CCeEEEEECCCCee
Confidence 33333446666777777766 57899999998764
No 298
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=23.17 E-value=5.1e+02 Score=22.64 Aligned_cols=164 Identities=12% Similarity=0.192 Sum_probs=88.6
Q ss_pred ceEEEEECC-CCceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCcee
Q 046684 170 SMVEMYDSR-HDAWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFAT 247 (373)
Q Consensus 170 ~~~~~yd~~-~~~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~ 247 (373)
..+-+++.. .++|.-...+.. ...+.-..++.- .|+ |+..+.....+..|--..++|..+ ..+..+.....
T Consensus 37 k~vriw~~~~~~s~~ck~vld~-----~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv-~~lEGHEnEVK 109 (312)
T KOG0645|consen 37 KAVRIWSTSSGDSWTCKTVLDD-----GHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECV-ATLEGHENEVK 109 (312)
T ss_pred ceEEEEecCCCCcEEEEEeccc-----cchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEE-eeeecccccee
Confidence 467777776 667876655422 223333344442 355 555455566677777778888887 55544433333
Q ss_pred EEE--ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecC-CEEEEEEcCCccEE
Q 046684 248 LVS--RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGN-GAICLYREVGLGMI 324 (373)
Q Consensus 248 ~~~--~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~ 324 (373)
.++ .+|.+... ...+..+-||+.++ .+..+.+..+..-.-. -..++-+. ..|++...+.+.|-
T Consensus 110 ~Vaws~sG~~LAT-CSRDKSVWiWe~de---ddEfec~aVL~~HtqD----------VK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 110 CVAWSASGNYLAT-CSRDKSVWIWEIDE---DDEFECIAVLQEHTQD----------VKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred EEEEcCCCCEEEE-eeCCCeEEEEEecC---CCcEEEEeeecccccc----------ccEEEEcCCcceeEEeccCCeEE
Confidence 333 34554433 34445578888874 5677777766532110 13344443 34555566666777
Q ss_pred EEEccccCCcccEEEecccccCCCCcccccceeEEEecc
Q 046684 325 IWREDEDKRKWEWVWVGGCCLTGGKQVQNVPMRGVLLHP 363 (373)
Q Consensus 325 ~yd~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p 363 (373)
+|+-+. .+ .|.-+..+ .++.. -.....|.|
T Consensus 176 ~~~~~~-dd--dW~c~~tl--~g~~~----TVW~~~F~~ 205 (312)
T KOG0645|consen 176 VYRDED-DD--DWECVQTL--DGHEN----TVWSLAFDN 205 (312)
T ss_pred EEeecC-CC--CeeEEEEe--cCccc----eEEEEEecC
Confidence 776552 45 67766553 33321 234455666
No 299
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.01 E-value=4.5e+02 Score=22.00 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=19.0
Q ss_pred CCEEEEEEcCCccEEEEEccccCCcccEEEecc
Q 046684 310 NGAICLYREVGLGMIIWREDEDKRKWEWVWVGG 342 (373)
Q Consensus 310 ~~~i~~~~~~~~~~~~yd~~~~~~~~~W~~~~~ 342 (373)
+|..++.- .++..+.||.+ -+ +|..+..
T Consensus 77 ~G~PiV~l-sng~~y~y~~~--L~--~W~~vsd 104 (219)
T PF07569_consen 77 NGVPIVTL-SNGDSYSYSPD--LG--CWIRVSD 104 (219)
T ss_pred CCCEEEEE-eCCCEEEeccc--cc--eeEEecc
Confidence 44444432 23568999999 88 9998744
No 300
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=22.98 E-value=5.4e+02 Score=22.85 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=67.0
Q ss_pred eeCcEEEEeeCCCCceEEEEEcCcccceeccCCCCCCCCCCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCcccce
Q 046684 92 SIGSFLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRTNPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYESM 171 (373)
Q Consensus 92 ~~~g~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~~~ 171 (373)
..++.+++... ...+.+|+..+++-+.. +.....-..+++.+ ..=.+.|+.+ ..
T Consensus 23 ~~~~~LLvssW---DgslrlYdv~~~~l~~~--~~~~~plL~c~F~d-----------~~~~~~G~~d----------g~ 76 (323)
T KOG1036|consen 23 PSSSDLLVSSW---DGSLRLYDVPANSLKLK--FKHGAPLLDCAFAD-----------ESTIVTGGLD----------GQ 76 (323)
T ss_pred CcCCcEEEEec---cCcEEEEeccchhhhhh--eecCCceeeeeccC-----------CceEEEeccC----------ce
Confidence 44455666554 45678888877733221 11111111222222 3334446665 46
Q ss_pred EEEEECCCCceeeecCCCccccccceeccCCceEEE--CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEE
Q 046684 172 VEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCT--RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLV 249 (373)
Q Consensus 172 ~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~--~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~ 249 (373)
+-+||..++.=..+..-.. ....+... .|.+ +.|.....|-..|+....-. ....... .....
T Consensus 77 vr~~Dln~~~~~~igth~~---------~i~ci~~~~~~~~v--IsgsWD~~ik~wD~R~~~~~---~~~d~~k-kVy~~ 141 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTHDE---------GIRCIEYSYEVGCV--ISGSWDKTIKFWDPRNKVVV---GTFDQGK-KVYCM 141 (323)
T ss_pred EEEEEecCCcceeeccCCC---------ceEEEEeeccCCeE--EEcccCccEEEEeccccccc---cccccCc-eEEEE
Confidence 8899998877554443210 00111112 2333 23456777888888752111 1111111 22233
Q ss_pred EECCEEEEEEeecCCceEEEEeec
Q 046684 250 SRNQKLTLIGGTCGGDACVWELSE 273 (373)
Q Consensus 250 ~~~g~l~~~gg~~~~~~~i~~~~~ 273 (373)
.+.|...++|+. +..+.+|++..
T Consensus 142 ~v~g~~LvVg~~-~r~v~iyDLRn 164 (323)
T KOG1036|consen 142 DVSGNRLVVGTS-DRKVLIYDLRN 164 (323)
T ss_pred eccCCEEEEeec-CceEEEEEccc
Confidence 445555555543 34478998865
No 301
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.35 E-value=6.6e+02 Score=23.66 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=72.0
Q ss_pred eEEEEEeccCCCCCCCCcccceEEEEECCCCceeeecCCCccccccceeccCCceEEEC--CEEEEEEcCCceEEEEEEC
Q 046684 150 FRIYVAGGMSDEPRGGATYESMVEMYDSRHDAWQIIGSMPVEFAVRLTVWTPNESVCTR--GMLYWITSARAYSVIGFDI 227 (373)
Q Consensus 150 ~kl~~~gg~~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~--g~ly~~gg~~~~~i~~yd~ 227 (373)
+|.++.||.+ ..+.+++..+..=... ++ ...-.-.+.++.. ..+|..+ ....+-.++.
T Consensus 214 gkylatgg~d----------~~v~Iw~~~t~ehv~~--~~------ghr~~V~~L~fr~gt~~lys~s--~Drsvkvw~~ 273 (479)
T KOG0299|consen 214 GKYLATGGRD----------RHVQIWDCDTLEHVKV--FK------GHRGAVSSLAFRKGTSELYSAS--ADRSVKVWSI 273 (479)
T ss_pred CcEEEecCCC----------ceEEEecCcccchhhc--cc------ccccceeeeeeecCccceeeee--cCCceEEEeh
Confidence 9999999886 4678888877542111 10 0000111122333 3566653 2334444444
Q ss_pred CCCcEEecccCCCCCCCceeEEE-ECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEE
Q 046684 228 ESNTWRELSAPMADRLEFATLVS-RNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRC 306 (373)
Q Consensus 228 ~~~~w~~~~~~~p~~~~~~~~~~-~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~ 306 (373)
+....-.. -......-.++-+ ..++..-+||.+.+ +.+|++.+ ++ ..+..-. ..+ .-++
T Consensus 274 ~~~s~vet--lyGHqd~v~~IdaL~reR~vtVGgrDrT-~rlwKi~e--es---qlifrg~-~~s-----------idcv 333 (479)
T KOG0299|consen 274 DQLSYVET--LYGHQDGVLGIDALSRERCVTVGGRDRT-VRLWKIPE--ES---QLIFRGG-EGS-----------IDCV 333 (479)
T ss_pred hHhHHHHH--HhCCccceeeechhcccceEEeccccce-eEEEeccc--cc---eeeeeCC-CCC-----------eeeE
Confidence 43322211 1111111112222 25677777776654 58999854 11 2222222 111 2445
Q ss_pred EecCCEEEEEEcCCccEEEEEccccCCccc
Q 046684 307 AAGNGAICLYREVGLGMIIWREDEDKRKWE 336 (373)
Q Consensus 307 ~~~~~~i~~~~~~~~~~~~yd~~~~~~~~~ 336 (373)
+.+++.=|+.|...+.|..+++. ++++-
T Consensus 334 ~~In~~HfvsGSdnG~IaLWs~~--KKkpl 361 (479)
T KOG0299|consen 334 AFINDEHFVSGSDNGSIALWSLL--KKKPL 361 (479)
T ss_pred EEecccceeeccCCceEEEeeec--ccCce
Confidence 55677777777777778888877 76433
No 302
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=22.24 E-value=5e+02 Score=22.25 Aligned_cols=146 Identities=13% Similarity=0.214 Sum_probs=75.1
Q ss_pred ceeEEeeCcEEEEeeCCCCceEEEEEcCcccc---eeccCCCCCCCC------CC-eEEEEEcCCCCCCCCCceEEEEEe
Q 046684 87 VRPVSSIGSFLLLRPINSTILQLVLCNPFTRQ---FRYLPLLNVSRT------NP-AVGIVMEGPAQHGPFPNFRIYVAG 156 (373)
Q Consensus 87 ~~~~~~~~g~l~~~gg~~~~~~~~v~np~t~~---w~~lp~~~~~~~------~~-~~~~~~~~~~~~~~~~~~kl~~~g 156 (373)
+..-.+.+|-+|.-... ...+..|+..++. +..+|.+-..-. .+ -+-+..| +.-++++-
T Consensus 70 gTg~VVynGs~yynk~~--t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avD---------E~GLWviY 138 (249)
T KOG3545|consen 70 GTGHVVYNGSLYYNKAG--TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVD---------ENGLWVIY 138 (249)
T ss_pred ccceEEEcceEEeeccC--CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceec---------ccceeEEe
Confidence 33455667777765532 5678889988854 455554421110 00 0111111 14566665
Q ss_pred ccCCCCCCCCcccceEEEEECCC----CceeeecCCCccccccceeccCCceEEECCEEEEEEcCC--ceEE-EEEECCC
Q 046684 157 GMSDEPRGGATYESMVEMYDSRH----DAWQIIGSMPVEFAVRLTVWTPNESVCTRGMLYWITSAR--AYSV-IGFDIES 229 (373)
Q Consensus 157 g~~~~~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~~~~~~~~~~~~~~~~~~g~ly~~gg~~--~~~i-~~yd~~~ 229 (373)
-.. +......+-..|+.+ ++|...-+. +....+.++-|.+|++-+.. ...| .+||..+
T Consensus 139 at~-----~~~g~iv~skLdp~tl~~e~tW~T~~~k----------~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~ 203 (249)
T KOG3545|consen 139 ATP-----ENAGTIVLSKLDPETLEVERTWNTTLPK----------RSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTT 203 (249)
T ss_pred ccc-----ccCCcEEeeccCHHHhheeeeeccccCC----------CCcCceEEEeeeeEEEeccccCCceEEEEEEcCC
Confidence 332 222222334445432 557543322 22334567789999996322 2233 6999998
Q ss_pred CcEEecccCCCCCCCceeEEE---ECCEEEEE
Q 046684 230 NTWRELSAPMADRLEFATLVS---RNQKLTLI 258 (373)
Q Consensus 230 ~~w~~~~~~~p~~~~~~~~~~---~~g~l~~~ 258 (373)
++-..+..|++..-....... .+.+||+.
T Consensus 204 ~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 204 GTQERIDLPFPNPYSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred CceecccccccchhhhhhccCCCcccceeeEe
Confidence 888777555554433333332 24567765
No 303
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.63 E-value=8.4e+02 Score=24.61 Aligned_cols=198 Identities=13% Similarity=0.105 Sum_probs=91.3
Q ss_pred eeCc-EEEEeeCCCCceEEEEEcCcccceeccCCCCCCCC-CCeEEEEEcCCCCCCCCCceEEEEEeccCCCCCCCCccc
Q 046684 92 SIGS-FLLLRPINSTILQLVLCNPFTRQFRYLPLLNVSRT-NPAVGIVMEGPAQHGPFPNFRIYVAGGMSDEPRGGATYE 169 (373)
Q Consensus 92 ~~~g-~l~~~gg~~~~~~~~v~np~t~~w~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~kl~~~gg~~~~~~~~~~~~ 169 (373)
+.|| .+|+.-+ +.+.+-|..|++-. +|....... ......+. ++ + ..+|..+ . .
T Consensus 28 s~nG~~L~t~~~----d~Vi~idv~t~~~~-l~s~~~ed~d~ita~~l~-~d--~-----~~L~~a~-r----------s 83 (775)
T KOG0319|consen 28 SSNGQHLYTACG----DRVIIIDVATGSIA-LPSGSNEDEDEITALALT-PD--E-----EVLVTAS-R----------S 83 (775)
T ss_pred CCCCCEEEEecC----ceEEEEEccCCcee-cccCCccchhhhheeeec-CC--c-----cEEEEee-c----------c
Confidence 4444 4444443 56777888888764 443322211 11222221 11 1 4455543 2 1
Q ss_pred ceEEEEECCCC----ceeeecCCCccccccceeccCCceEEE-CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCC
Q 046684 170 SMVEMYDSRHD----AWQIIGSMPVEFAVRLTVWTPNESVCT-RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLE 244 (373)
Q Consensus 170 ~~~~~yd~~~~----~W~~~~~~p~~~~~~~~~~~~~~~~~~-~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~ 244 (373)
..+.+|+..++ .|+.+..-|.- .+++. .|.+... |...+.+.+.|...+.-.-- . ....+
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi-----------~ma~~~~g~LlAt-ggaD~~v~VWdi~~~~~th~-f--kG~gG 148 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVI-----------TMAFDPTGTLLAT-GGADGRVKVWDIKNGYCTHS-F--KGHGG 148 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeE-----------EEEEcCCCceEEe-ccccceEEEEEeeCCEEEEE-e--cCCCc
Confidence 35778888775 47776555421 11222 2333333 45667788888776654422 1 11111
Q ss_pred ceeEEEECC---EEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCc
Q 046684 245 FATLVSRNQ---KLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYREVGL 321 (373)
Q Consensus 245 ~~~~~~~~g---~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 321 (373)
-......+. +..++.|..+..+.+|++.. ... .+..|-.-.+. +........+.. .+..+...
T Consensus 149 vVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~--~~t---cl~~~~~H~S~--------vtsL~~~~d~~~-~ls~~RDk 214 (775)
T KOG0319|consen 149 VVSSLLFHPHWNRWLLASGATDGTVRVWNLND--KRT---CLHTMILHKSA--------VTSLAFSEDSLE-LLSVGRDK 214 (775)
T ss_pred eEEEEEeCCccchhheeecCCCceEEEEEccc--Cch---HHHHHHhhhhh--------eeeeeeccCCce-EEEeccCc
Confidence 112222222 22334445555579999975 111 22222211111 112223333333 44445555
Q ss_pred cEEEEEccccCCcccEEEecccccCCC
Q 046684 322 GMIIWREDEDKRKWEWVWVGGCCLTGG 348 (373)
Q Consensus 322 ~~~~yd~~~~~~~~~W~~~~~~~~~~~ 348 (373)
.+.+||+. +. +.....|....
T Consensus 215 vi~vwd~~--~~----~~l~~lp~ye~ 235 (775)
T KOG0319|consen 215 VIIVWDLV--QY----KKLKTLPLYES 235 (775)
T ss_pred EEEEeehh--hh----hhhheechhhh
Confidence 78889997 44 44455554444
No 304
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=6.8e+02 Score=22.97 Aligned_cols=108 Identities=9% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCceEEEEEECCCCcEEecccCCCCCCCceeEEEECCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeec
Q 046684 208 RGMLYWITSARAYSVIGFDIESNTWRELSAPMADRLEFATLVSRNQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVP 287 (373)
Q Consensus 208 ~g~ly~~gg~~~~~i~~yd~~~~~w~~~~~~~p~~~~~~~~~~~~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p 287 (373)
++++|+. ....+.+..+|..+++-... .+....-........++.+|+........ .++.++. .+=+.+...+
T Consensus 85 ~~~vyv~-~~~~~~v~vid~~~~~~~~~-~~vG~~P~~~~~~~~~~~vYV~n~~~~~~-~vsvid~----~t~~~~~~~~ 157 (381)
T COG3391 85 GNKVYVT-TGDSNTVSVIDTATNTVLGS-IPVGLGPVGLAVDPDGKYVYVANAGNGNN-TVSVIDA----ATNKVTATIP 157 (381)
T ss_pred CCeEEEe-cCCCCeEEEEcCcccceeeE-eeeccCCceEEECCCCCEEEEEecccCCc-eEEEEeC----CCCeEEEEEe
Q ss_pred hhhhhhhcCCCCCCCceEEEecCCEEEEEEcCCccEEEEEccccCC
Q 046684 288 IEMGMRLSGGKASWGGTRCAAGNGAICLYREVGLGMIIWREDEDKR 333 (373)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~yd~~~~~~ 333 (373)
...... ...+...++++|+.....+.+.++|.+ ..
T Consensus 158 vG~~P~---------~~a~~p~g~~vyv~~~~~~~v~vi~~~--~~ 192 (381)
T COG3391 158 VGNTPT---------GVAVDPDGNKVYVTNSDDNTVSVIDTS--GN 192 (381)
T ss_pred cCCCcc---------eEEECCCCCeEEEEecCCCeEEEEeCC--Cc
No 305
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=20.00 E-value=4.8e+02 Score=21.17 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=32.7
Q ss_pred CCEEEEEEeecCCceEEEEeecCCCCCCeEEEEeechhhhhhhcCCCCCCCceEEEecCCEEEEEEc---CCccEEEEEc
Q 046684 252 NQKLTLIGGTCGGDACVWELSEGGDDDIWCLIEKVPIEMGMRLSGGKASWGGTRCAAGNGAICLYRE---VGLGMIIWRE 328 (373)
Q Consensus 252 ~g~l~~~gg~~~~~~~i~~~~~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~yd~ 328 (373)
+.++.++.|.....+.+|+.+ .+.+..++.... ........|..++++| ..+.+.+||.
T Consensus 71 g~~favi~g~~~~~v~lyd~~-------~~~i~~~~~~~~-----------n~i~wsP~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVK-------GKKIFSFGTQPR-----------NTISWSPDGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred CCEEEEEEccCCcccEEEcCc-------ccEeEeecCCCc-----------eEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 456777766544457888874 345555543221 1223333444444443 2356899999
Q ss_pred c
Q 046684 329 D 329 (373)
Q Consensus 329 ~ 329 (373)
+
T Consensus 133 ~ 133 (194)
T PF08662_consen 133 R 133 (194)
T ss_pred C
Confidence 8
Done!