BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046686
IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH
IREFLRGQNK

High Scoring Gene Products

Symbol, full name Information P value
Y73F8A.24 gene from Caenorhabditis elegans 2.8e-06
gtf2h4
TFIIH subunit 		gene from Dictyostelium discoideum 0.00032

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046686
        (70 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

WB|WBGene00013529 - symbol:Y73F8A.24 species:6239 "Caenor...   117  2.8e-06   1
DICTYBASE|DDB_G0293228 - symbol:gtf2h4 "TFIIH subunit" sp...    98  0.00032   1


>WB|WBGene00013529 [details] [associations]
            symbol:Y73F8A.24 species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
            evidence=IMP] [GO:0009792 "embryo development ending in birth or
            egg hatching" evidence=IMP] InterPro:IPR004598 Pfam:PF03849
            GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0006281
            GO:GO:0040035 EMBL:AL132862 eggNOG:COG5144 KO:K03144 OMA:PVNCLPI
            PANTHER:PTHR13152 GeneTree:ENSGT00390000014159 GeneID:178431
            KEGG:cel:CELE_Y73F8A.24 CTD:178431 RefSeq:NP_001255863.1
            ProteinModelPortal:Q9NA35 SMR:Q9NA35 STRING:Q9NA35 PaxDb:Q9NA35
            EnsemblMetazoa:Y73F8A.24a UCSC:Y73F8A.24 WormBase:Y73F8A.24a
            HOGENOM:HOG000020092 InParanoid:Q9NA35 NextBio:901110
            ArrayExpress:Q9NA35 Uniprot:Q9NA35
        Length = 481

 Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query:     1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
             IRLWE +  +  +   + Y  F S D F   C+YAR ++ L W D+++  ++V  + H  
Sbjct:   397 IRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHEL 456

Query:    61 IREFLR 66
             +R++ +
Sbjct:   457 VRQWYK 462


>DICTYBASE|DDB_G0293228 [details] [associations]
            symbol:gtf2h4 "TFIIH subunit" species:44689
            "Dictyostelium discoideum" [GO:0006289 "nucleotide-excision repair"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0004003
            "ATP-dependent DNA helicase activity" evidence=IEA] [GO:0000439
            "core TFIIH complex" evidence=IEA] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=ISS] [GO:0005675 "holo TFIIH
            complex" evidence=ISS] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR004598
            Pfam:PF03849 dictyBase:DDB_G0293228 GenomeReviews:CM000155_GR
            GO:GO:0006355 EMBL:AAFI02000200 GO:GO:0006366 GO:GO:0006289
            GO:GO:0005675 RefSeq:XP_629237.1 ProteinModelPortal:Q54C29
            STRING:Q54C29 PRIDE:Q54C29 EnsemblProtists:DDB0231037
            GeneID:8629119 KEGG:ddi:DDB_G0293228 eggNOG:COG5144 KO:K03144
            OMA:PVNCLPI ProtClustDB:CLSZ2728699 PANTHER:PTHR13152
            Uniprot:Q54C29
        Length = 483

 Score = 98 (39.6 bits), Expect = 0.00032, P = 0.00032
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query:     1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
             I LWE++ N+   T+   Y+ FP+ D + A   +A+++    W       LVVK E +  
Sbjct:   414 ILLWEAERNRITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKTLVVKEEGNDP 473

Query:    61 IREFLR 66
             IR F++
Sbjct:   474 IRNFIK 479


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        70   0.00091  102 3  11 22  0.45    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.48u 0.14s 8.62t   Elapsed:  00:00:01
  Total cpu time:  8.48u 0.14s 8.62t   Elapsed:  00:00:01
  Start:  Mon May 20 21:00:23 2013   End:  Mon May 20 21:00:24 2013

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