BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046686
(70 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255556021|ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative [Ricinus communis]
Length = 451
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 62/68 (91%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWESD+N+ EMT H YDEFPSRDVFEAAC++ARD +GL WEDSK+MR+VVKAEIH++
Sbjct: 383 IRLWESDMNRVEMTPAHLYDEFPSRDVFEAACNFARDWNGLLWEDSKRMRMVVKAEIHLN 442
Query: 61 IREFLRGQ 68
+RE+LRGQ
Sbjct: 443 MREYLRGQ 450
>gi|224077128|ref|XP_002305144.1| predicted protein [Populus trichocarpa]
gi|222848108|gb|EEE85655.1| predicted protein [Populus trichocarpa]
Length = 449
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/68 (75%), Positives = 62/68 (91%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DLN+ E+T H+YDEFPSRD FEAACD+AR+ +GL WEDSKKMR+VVKAEIH++
Sbjct: 381 IRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAREWNGLLWEDSKKMRVVVKAEIHMN 440
Query: 61 IREFLRGQ 68
+REFLRGQ
Sbjct: 441 MREFLRGQ 448
>gi|296084734|emb|CBI25875.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/66 (75%), Positives = 57/66 (86%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DLN+ E H YDEFPSRDVFEAACD+AR+ GL WEDSKKMRLVVKAEIH+H
Sbjct: 190 IRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLH 249
Query: 61 IREFLR 66
+RE+LR
Sbjct: 250 MREYLR 255
>gi|147854406|emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
Length = 451
Score = 111 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 50/66 (75%), Positives = 57/66 (86%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DLN+ E H YDEFPSRDVFEAACD+AR+ GL WEDSKKMRLVVKAEIH+H
Sbjct: 383 IRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLH 442
Query: 61 IREFLR 66
+RE+LR
Sbjct: 443 MREYLR 448
>gi|359497087|ref|XP_002267711.2| PREDICTED: general transcription factor IIH subunit 4-like [Vitis
vinifera]
Length = 238
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 57/66 (86%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DLN+ E H YDEFPSRDVFEAACD+AR+ GL WEDSKKMRLVVKAEIH+H
Sbjct: 170 IRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLH 229
Query: 61 IREFLR 66
+RE+LR
Sbjct: 230 MREYLR 235
>gi|297800414|ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
gi|297313927|gb|EFH44350.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
Length = 452
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/70 (68%), Positives = 59/70 (84%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DL + EMT+ H+YDEFPS+DVFEAACD+AR+ GL WEDSK+MRLVVK+E+H
Sbjct: 383 IRLWETDLKRIEMTQAHFYDEFPSKDVFEAACDFAREWGGLLWEDSKRMRLVVKSEVHNQ 442
Query: 61 IREFLRGQNK 70
+REFL Q K
Sbjct: 443 MREFLHNQTK 452
>gi|357461579|ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490119|gb|AES71322.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 452
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWESDLN+ EMT +YYDEFPSRDVFE ACD AR+ SGL WEDSKKM LVVK+E+H +
Sbjct: 384 IRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTY 443
Query: 61 IREFLRGQ 68
+R+FLR Q
Sbjct: 444 VRDFLRRQ 451
>gi|358346685|ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355503331|gb|AES84534.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 451
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWESDLN+ EMT +YYDEFPSRDVFE ACD AR+ SGL WEDSKKM LVVK+E+H +
Sbjct: 383 IRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTY 442
Query: 61 IREFLRGQ 68
+R+FLR Q
Sbjct: 443 VRDFLRRQ 450
>gi|51969958|dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana]
Length = 452
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/70 (67%), Positives = 60/70 (85%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DL + EMT+ H+YDEFPS+DVFEAACD+AR+ GL WEDSK+MRLVVK+E+H
Sbjct: 383 IRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQ 442
Query: 61 IREFLRGQNK 70
+REFL Q++
Sbjct: 443 MREFLHTQSR 452
>gi|42566894|ref|NP_193435.2| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|51969678|dbj|BAD43531.1| unnamed protein product [Arabidopsis thaliana]
gi|115646777|gb|ABJ17114.1| At4g17020 [Arabidopsis thaliana]
gi|332658439|gb|AEE83839.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 452
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/70 (67%), Positives = 60/70 (85%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DL + EMT+ H+YDEFPS+DVFEAACD+AR+ GL WEDSK+MRLVVK+E+H
Sbjct: 383 IRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQ 442
Query: 61 IREFLRGQNK 70
+REFL Q++
Sbjct: 443 MREFLHTQSR 452
>gi|42572935|ref|NP_974564.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658438|gb|AEE83838.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 462
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/70 (67%), Positives = 60/70 (85%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DL + EMT+ H+YDEFPS+DVFEAACD+AR+ GL WEDSK+MRLVVK+E+H
Sbjct: 383 IRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQ 442
Query: 61 IREFLRGQNK 70
+REFL Q++
Sbjct: 443 MREFLHTQSR 452
>gi|449433857|ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
sativus]
Length = 451
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 59/68 (86%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWESDLN+ ++T H+YDEFPSR+VFEAACDYAR+ +GL WEDSK +RLVVKA+IH H
Sbjct: 383 IRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTH 442
Query: 61 IREFLRGQ 68
+RE LR Q
Sbjct: 443 MREHLRRQ 450
>gi|334186626|ref|NP_001190745.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658440|gb|AEE83840.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 482
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 47/69 (68%), Positives = 59/69 (85%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DL + EMT+ H+YDEFPS+DVFEAACD+AR+ GL WEDSK+MRLVVK+E+H
Sbjct: 383 IRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQ 442
Query: 61 IREFLRGQN 69
+REFL Q+
Sbjct: 443 MREFLHTQS 451
>gi|356521347|ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 57/68 (83%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DLN+ EMT +YYDEFPSRDVFE ACD AR+ +GL WEDSKKM +VVK E+H +
Sbjct: 383 IRLWEADLNRVEMTDTYYYDEFPSRDVFEGACDCAREWNGLLWEDSKKMHMVVKTEVHPY 442
Query: 61 IREFLRGQ 68
+R++LR Q
Sbjct: 443 VRDYLRRQ 450
>gi|356548733|ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 57/68 (83%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DLN+ EMT +YYDEFPSRDVFE ACD AR+ +GL WEDSKKM +VVK E+H +
Sbjct: 383 IRLWEADLNRVEMTDAYYYDEFPSRDVFEGACDCAREWNGLLWEDSKKMHMVVKTEVHQY 442
Query: 61 IREFLRGQ 68
+R++LR Q
Sbjct: 443 VRDYLRRQ 450
>gi|32487401|emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa Japonica Group]
Length = 451
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ +MT H Y++FPS+D+F+ CDYARD L WED+KKMRL+V+ E H
Sbjct: 383 IRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSE 442
Query: 61 IREFLR 66
+REFLR
Sbjct: 443 MREFLR 448
>gi|218195833|gb|EEC78260.1| hypothetical protein OsI_17944 [Oryza sativa Indica Group]
Length = 459
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ +MT H Y++FPS+D+F+ CDYARD L WED+KKMRL+V+ E H
Sbjct: 391 IRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSE 450
Query: 61 IREFLR 66
+REFLR
Sbjct: 451 MREFLR 456
>gi|90399251|emb|CAJ86205.1| B0213E10.4 [Oryza sativa Indica Group]
Length = 470
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ +MT H Y++FPS+D+F+ CDYARD L WED+KKMRL+V+ E H
Sbjct: 402 IRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSE 461
Query: 61 IREFLR 66
+REFLR
Sbjct: 462 MREFLR 467
>gi|222629781|gb|EEE61913.1| hypothetical protein OsJ_16644 [Oryza sativa Japonica Group]
Length = 427
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 51/66 (77%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ +MT H Y++FPS+D+F+ CDYARD L WED+KKMRL+V+ E H
Sbjct: 359 IRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSE 418
Query: 61 IREFLR 66
+REFLR
Sbjct: 419 MREFLR 424
>gi|414584751|tpg|DAA35322.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 451
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+DLN+ EM H Y++FPS++ FE CDYARD L WED K+MRL+V+ E H
Sbjct: 383 IRLWETDLNRVEMIPSHLYEDFPSKEWFEQCCDYARDNGYLLWEDPKRMRLIVRGEFHPE 442
Query: 61 IREFLRGQ 68
+REFLR Q
Sbjct: 443 MREFLRRQ 450
>gi|357123176|ref|XP_003563288.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 4-like [Brachypodium distachyon]
Length = 452
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ +M H Y++FPS+D+FE CD ARD L WEDSKKMRL+V+ E H
Sbjct: 384 IRLWETDRNRVDMVLSHVYEDFPSKDLFEQCCDLARDNGFLLWEDSKKMRLIVRVEFHQE 443
Query: 61 IREFLRGQ 68
+REFLR Q
Sbjct: 444 MREFLRRQ 451
>gi|242074798|ref|XP_002447335.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
gi|241938518|gb|EES11663.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
Length = 451
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ EM H Y++FPS++ FE CDYARD L WEDSK+MRL+V+ E H
Sbjct: 383 IRLWETDRNRVEMIPSHLYEDFPSKEWFEQCCDYARDNGYLLWEDSKRMRLIVRGEFHPE 442
Query: 61 IREFLRGQ 68
+REFLR Q
Sbjct: 443 MREFLRRQ 450
>gi|357166758|ref|XP_003580836.1| PREDICTED: general transcription factor IIH subunit 4-like
[Brachypodium distachyon]
Length = 451
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ +M H Y++FPS+D+FE CD ARD L WEDSKKMRL+V+ E H
Sbjct: 383 IRLWETDRNRVDMVLSHVYEDFPSKDMFEQCCDLARDNGFLLWEDSKKMRLIVRVEFHQE 442
Query: 61 IREFLRGQ 68
+REFLR Q
Sbjct: 443 MREFLRRQ 450
>gi|326510735|dbj|BAJ91715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 451
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 50/68 (73%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ EM H Y++FPS+D+FE CD+ARD L WED+KKMRL+V E H
Sbjct: 383 IRLWENDRNRVEMILSHVYEDFPSKDMFEQCCDHARDNGYLLWEDAKKMRLIVSGEFHQE 442
Query: 61 IREFLRGQ 68
+REFLR Q
Sbjct: 443 MREFLRRQ 450
>gi|115461368|ref|NP_001054284.1| Os04g0680000 [Oryza sativa Japonica Group]
gi|113565855|dbj|BAF16198.1| Os04g0680000 [Oryza sativa Japonica Group]
Length = 444
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE+D N+ +MT H Y++FPS+D+F+ CDYARD L WED+KKMRL+V+ E H
Sbjct: 374 IRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSE 433
Query: 61 IREF 64
+ ++
Sbjct: 434 MHDY 437
>gi|167997877|ref|XP_001751645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697626|gb|EDQ83962.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 49/69 (71%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE+D N+ + ++YD+FP+ ++EA +ARD GL +ED+ RL+V++++H
Sbjct: 386 LRLWETDRNRVQFEPAYFYDDFPTMAIYEAVVAHARDLGGLLFEDASAKRLIVRSDLHED 445
Query: 61 IREFLRGQN 69
+R+++R Q+
Sbjct: 446 MRQYIRKQS 454
>gi|302806060|ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
gi|302808297|ref|XP_002985843.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300146350|gb|EFJ13020.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300147366|gb|EFJ14030.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
Length = 459
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 44/70 (62%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWESD + + + Y+ FPS V+E+ +ARDR+GL WED+ + +VV E H
Sbjct: 388 IRLWESDRVRVQYLPAYCYEGFPSTSVYESVVAHARDRNGLLWEDANRKMIVVGGEHHEA 447
Query: 61 IREFLRGQNK 70
IR FL+ NK
Sbjct: 448 IRAFLQNINK 457
>gi|308460924|ref|XP_003092760.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
gi|308252519|gb|EFO96471.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
Length = 470
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + ++ + Y F S D F+ CDYA++R L W ++++ ++V E H +
Sbjct: 396 IRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKLVIVNEEGHEY 455
Query: 61 IREFLR 66
+R++ +
Sbjct: 456 VRQWYK 461
>gi|308452336|ref|XP_003089005.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
gi|308243592|gb|EFO87544.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
Length = 468
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + ++ + Y F S D F+ CDYA++R L W ++++ ++V E H +
Sbjct: 393 IRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKLVIVNEEGHEY 452
Query: 61 IREFLR 66
+R++ +
Sbjct: 453 VRQWYK 458
>gi|308460920|ref|XP_003092758.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
gi|308252517|gb|EFO96469.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
Length = 128
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + ++ + Y F S D F+ CDYA++R L W ++++ ++V E H +
Sbjct: 54 IRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKLVIVNEEGHEY 113
Query: 61 IREFLR 66
+R++ +
Sbjct: 114 VRQWYK 119
>gi|290987279|ref|XP_002676350.1| predicted protein [Naegleria gruberi]
gi|284089952|gb|EFC43606.1| predicted protein [Naegleria gruberi]
Length = 532
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE + N+ T YD+F + A DYAR + L W +KM +V K E H
Sbjct: 462 ILLWEKERNRVIKTTSVVYDKFTNVSELNATVDYARRQGALLWHSEEKMMMVCKREFHGL 521
Query: 61 IREFLRGQ 68
++EF+ Q
Sbjct: 522 MKEFISSQ 529
>gi|302831319|ref|XP_002947225.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
gi|300267632|gb|EFJ51815.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
Length = 90
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLV 52
IRLWE+ +N+ V Y+ SR++FE A ++R L WEDS +MR V
Sbjct: 34 IRLWEASMNRLRADSVVLYENLASRELFERALAFSRSSGTLLWEDSGQMRFV 85
>gi|453232316|ref|NP_001263824.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
gi|412976517|emb|CCO25636.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
Length = 485
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + + + Y F S D F C+YAR ++ L W D+++ ++V + H
Sbjct: 401 IRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHEL 460
Query: 61 IREFLR 66
+R++ +
Sbjct: 461 VRQWYK 466
>gi|392901990|ref|NP_001255863.1| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
gi|26985915|emb|CAB70230.2| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
Length = 481
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + + + Y F S D F C+YAR ++ L W D+++ ++V + H
Sbjct: 397 IRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHEL 456
Query: 61 IREFLR 66
+R++ +
Sbjct: 457 VRQWYK 462
>gi|453232318|ref|NP_001263825.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
gi|412976516|emb|CCO25635.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
Length = 435
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + + + Y F S D F C+YAR ++ L W D+++ ++V + H
Sbjct: 351 IRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHEL 410
Query: 61 IREFLR 66
+R++ +
Sbjct: 411 VRQWYK 416
>gi|392901992|ref|NP_001255864.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
gi|290457493|emb|CBK19514.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
Length = 431
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + + + Y F S D F C+YAR ++ L W D+++ ++V + H
Sbjct: 347 IRLWEDERRRMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHEL 406
Query: 61 IREFLR 66
+R++ +
Sbjct: 407 VRQWYK 412
>gi|384246869|gb|EIE20357.1| Tfb2-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 451
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKK--MRLVVKAEIH 58
+RLW++D + R YD+FPS VF+ + AR WED K RL V+ H
Sbjct: 381 VRLWQADTMRVRHNRAVLYDDFPSAQVFQLSAQKARTLGVWLWEDPKAGMGRLAVQEAGH 440
Query: 59 IHIREFLR 66
+RE+++
Sbjct: 441 DAMREYIK 448
>gi|342319113|gb|EGU11064.1| RNA polymerase II transcription factor B subunit 2 [Rhodotorula
glutinis ATCC 204091]
Length = 496
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + + T + YDEF S +E +YAR+ + E K ++ V A+ H
Sbjct: 412 IRLWEHERRRIQTTEGYLYDEFSSTHDYELVVNYAREIGSVLLELPKARKVFVTADGHQQ 471
Query: 61 IREFLR 66
+REF++
Sbjct: 472 VREFIK 477
>gi|341886092|gb|EGT42027.1| hypothetical protein CAEBREN_00374 [Caenorhabditis brenneri]
Length = 460
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + ++ + Y F S + F CDYA++R L W D ++ ++V E H +
Sbjct: 384 IRLWEDERRRMDLKDSYIYSNFESDEEFNGVCDYAKERKILLWADYQRKLVIVNEEGHEY 443
Query: 61 IREFLRGQ 68
+R++ + Q
Sbjct: 444 VRQWYKQQ 451
>gi|402224480|gb|EJU04542.1| transcription factor Tfb2 [Dacryopinax sp. DJM-731 SS1]
Length = 466
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + N+ + + Y++F S+ F+ +YA+ + WE+ +K ++ V+ + H +
Sbjct: 396 IRLWQLEKNRLKSENGYLYEDFNSQGDFDLVLNYAKQLDVVLWENREKRKMFVREDGHEN 455
Query: 61 IREFLR 66
+REF+R
Sbjct: 456 VREFIR 461
>gi|328873270|gb|EGG21637.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 453
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWES+ N+ + +D FP+ + F +A+D+ L W D K LVV E
Sbjct: 384 IRLWESERNRITYKKAVLFDSFPNAESFSKTVTFAKDQYFLVWFDETKKMLVVNDEGSEP 443
Query: 61 IREFLR 66
IR +++
Sbjct: 444 IRNYIK 449
>gi|328766914|gb|EGF76966.1| hypothetical protein BATDEDRAFT_92242 [Batrachochytrium
dendrobatidis JAM81]
Length = 471
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE + N+ ++R H Y F + YA D W K +VV AE H H
Sbjct: 395 VRLWEMERNRLRISRGHLYQMFSGEQEYREILKYATDLGYELWHSDSKRLVVVSAEGHEH 454
Query: 61 IREFLRGQ 68
I+ F Q
Sbjct: 455 IKVFFSKQ 462
>gi|146414792|ref|XP_001483366.1| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAE 56
I+LW+ +L++ + + + EF S+ F+ C+YA D L W D KMR V +
Sbjct: 428 IKLWQLELDRIQAFEGYLFKEFASQQEFDVLCNYASDVGVLIWSDRTKMRFFVTKD 483
>gi|190347675|gb|EDK39997.2| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAE 56
I+LW+ +L++ + + + EF S+ F+ C+YA D L W D KMR V +
Sbjct: 428 IKLWQLELDRIQAFEGYLFKEFASQQEFDVLCNYASDVGVLIWSDRTKMRFFVTKD 483
>gi|393246879|gb|EJD54387.1| transcription factor Tfb2 [Auricularia delicata TFB-10046 SS5]
Length = 480
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE + N+ + Y +F S+ FE DYAR + WE+ ++ KA+ H +
Sbjct: 404 VRLWELEKNRVKAEEGFLYMDFTSQADFELVLDYARKLGVVIWENGRQRMFFGKADGHNN 463
Query: 61 IREFL 65
IR F+
Sbjct: 464 IRTFI 468
>gi|242021693|ref|XP_002431278.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
gi|212516535|gb|EEB18540.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
Length = 467
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++LN+ + Y +F S+ FEA D A + L WE+ KK +VV H
Sbjct: 395 IKLWENELNRLVYSDGVLYSQFLSQADFEALRDRANELGVLVWENDKKRTMVVTKSGHDD 454
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 455 VKKFWKSYSK 464
>gi|384484453|gb|EIE76633.1| hypothetical protein RO3G_01337 [Rhizopus delemar RA 99-880]
Length = 284
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + T + Y EF + F+AA YARD L W +++K + + H +
Sbjct: 213 IRLWEMERNRLKPTPSYLYHEFNVQADFDAAEKYARDLGVLLWSNNQKRTMAITEAGHEN 272
Query: 61 IREFLR 66
++ F++
Sbjct: 273 VKGFVK 278
>gi|440791255|gb|ELR12502.1| TFIIH basal transcription factor complex subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 304
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE++ + ++ ++YD+F S F+ A YARD L + D+ K L V + H
Sbjct: 226 LRLWEAEDRRLSLSPGYFYDDFASLAAFKKAEKYARDVGALLYSDAAKRFLFVTEQGHQL 285
Query: 61 IREFLR 66
+R +++
Sbjct: 286 LRRYVK 291
>gi|440800489|gb|ELR21525.1| transcription factor tfb2 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 465
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE++ + ++ ++YD+F S F+ A YARD L + D+ K L V H
Sbjct: 385 LRLWEAEDRRLSLSSGYFYDDFASLAAFKKAEKYARDVGALIYSDATKRFLFVSEPGHQL 444
Query: 61 IREFLR 66
+R +++
Sbjct: 445 LRRYVK 450
>gi|403180193|ref|XP_003338499.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166015|gb|EFP94080.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 679
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + Y++F S +++ Y+R + WE + +L V + H+
Sbjct: 233 IRLWELEKNRIRAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLT 292
Query: 61 IREFLR 66
+REF R
Sbjct: 293 LREFFR 298
>gi|403163300|ref|XP_003323393.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163998|gb|EFP78974.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 887
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + Y++F S +++ Y+R + WE + +L V + H+
Sbjct: 438 IRLWELEKNRIRAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLT 497
Query: 61 IREFLR 66
+REF R
Sbjct: 498 LREFFR 503
>gi|405952750|gb|EKC20525.1| General transcription factor IIH subunit 4 [Crassostrea gigas]
Length = 380
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE + ++ + YD+F S++ FE DYA+D L W+++ K +VV H
Sbjct: 308 VRLWELERDRFKFMEGVLYDQFLSQNDFELLRDYAKDLGVLLWDNAIKRVMVVTKGGHDD 367
Query: 61 IREFLRGQNK 70
++ + + Q +
Sbjct: 368 VKRYWKRQKQ 377
>gi|343428936|emb|CBQ72481.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Sporisorium reilianum SRZ2]
Length = 493
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + +F S+ FE +YA+ L WED K R V ++
Sbjct: 424 IRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRNYAKQLGVLVWEDEGKRRFFVDEAGNVP 483
Query: 61 IREFLR 66
+R+++R
Sbjct: 484 VRDYIR 489
>gi|353240543|emb|CCA72408.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Piriformospora indica DSM 11827]
Length = 462
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + + Y EF S + +E YAR+ + WE++ + A +H
Sbjct: 392 IRLWELERHRVKGQDGYLYKEFASMNDYEVVVQYARELGVVLWENASRRMFFADAAGRVH 451
Query: 61 IREFL 65
IR ++
Sbjct: 452 IRSYI 456
>gi|260945437|ref|XP_002617016.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
gi|238848870|gb|EEQ38334.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
Length = 511
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LW+ +L++ + + + +F +++ ++ C+YA + L W D K+R V AE
Sbjct: 442 IKLWQLELDRIQTFEGYLFKDFKNQNEYDVLCNYATEVGVLLWSDKTKLRFFVTAEGMHQ 501
Query: 61 IREF 64
+ +F
Sbjct: 502 VADF 505
>gi|66800623|ref|XP_629237.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
gi|74850716|sp|Q54C29.1|TF2H4_DICDI RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=TFIIH basal transcription factor complex subunit 4
gi|60462610|gb|EAL60813.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
Length = 483
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE++ N+ T+ Y+ FP+ D + A +A+++ W LVVK E +
Sbjct: 414 ILLWEAERNRITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKTLVVKEEGNDP 473
Query: 61 IREFLR 66
IR F++
Sbjct: 474 IRNFIK 479
>gi|281208616|gb|EFA82792.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 458
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IR+WE++ N+ + +D FP+++ F YA+D S W K LVV
Sbjct: 389 IRIWENERNRILYKKAVLFDSFPTQESFNMTLQYAKDLSFYMWASEAKKVLVVSDNGFDA 448
Query: 61 IREFLR 66
I+ ++R
Sbjct: 449 IKNYIR 454
>gi|159474228|ref|XP_001695231.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276165|gb|EDP01939.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLV 52
IRLWE+ +N+ + Y+ SR ++E A AR LQWED +MR V
Sbjct: 384 IRLWEASMNRLQAHPAVLYENMESRQLYERAVAAARAAGTLQWEDGARMRFV 435
>gi|409077631|gb|EKM77996.1| hypothetical protein AGABI1DRAFT_114851 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198975|gb|EKV48900.1| hypothetical protein AGABI2DRAFT_191077 [Agaricus bisporus var.
bisporus H97]
Length = 467
Score = 41.2 bits (95), Expect = 0.070, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + + Y F S+ ++ +YA+ + WE++ K E H+
Sbjct: 394 IRLWELEKNRLKSSEGYLYTAFTSQADYDLVLNYAKQLDVVLWENAAKRCFFGSLEGHLR 453
Query: 61 IREFL--RGQN 69
I+EF+ R QN
Sbjct: 454 IKEFIERRTQN 464
>gi|390594544|gb|EIN03954.1| transcription factor Tfb2 [Punctularia strigosozonata HHB-11173
SS5]
Length = 467
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + Y EF S+ +E +YAR+ + + WE+ K E H +
Sbjct: 395 IRLWELEKNRLKSQEGFLYTEFASQGDYEYVLNYARELNVVLWENPVKRCFFGSMEGHAN 454
Query: 61 IREFL 65
IR F+
Sbjct: 455 IRGFI 459
>gi|302667863|ref|XP_003025510.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
gi|291189624|gb|EFE44899.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
Length = 386
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + EF + FEA C YA + L W+ DS++M V + H
Sbjct: 316 IRLWQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HE 372
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 373 QVAAFLRSR 381
>gi|302495702|ref|XP_003009866.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
gi|291173385|gb|EFE29221.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
Length = 386
Score = 41.2 bits (95), Expect = 0.076, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + EF + FEA C YA + L W+ DS++M V + H
Sbjct: 316 IRLWQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HE 372
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 373 QVAAFLRSR 381
>gi|432883135|ref|XP_004074222.1| PREDICTED: general transcription factor IIH subunit 4-like [Oryzias
latipes]
Length = 460
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + T Y++F S+ FE D A+ L W+D+ +VV + H
Sbjct: 389 IRLWELERDRLQFTEGVLYNQFLSQADFEVLRDRAQGLGCLVWQDASHRAMVVTPQGHSE 448
Query: 61 IREFLRGQ 68
+++F + Q
Sbjct: 449 VKKFWKRQ 456
>gi|74143475|dbj|BAE28812.1| unnamed protein product [Mus musculus]
Length = 463
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ VFE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVVFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|327298217|ref|XP_003233802.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
gi|326463980|gb|EGD89433.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
Length = 484
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + EF + FEA C YA + L W+ DS++M V + H
Sbjct: 414 IRLWQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HE 470
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 471 QVAAFLRSR 479
>gi|326483225|gb|EGE07235.1| transcription factor Tfb2 [Trichophyton equinum CBS 127.97]
Length = 484
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + EF + FEA C YA + L W+ DS++M V + H
Sbjct: 414 IRLWQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HE 470
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 471 QVAAFLRSR 479
>gi|302684027|ref|XP_003031694.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
gi|300105387|gb|EFI96791.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
Length = 476
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + Y EF S+ +E +YA+ + WE+ K E H +
Sbjct: 405 IRLWELERNRTKSQEGFLYTEFASQADYEYVLNYAKQLGVVLWENHAKRCFFAAQEGHAN 464
Query: 61 IREFL 65
I+ F+
Sbjct: 465 IKSFI 469
>gi|260810774|ref|XP_002600123.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
gi|229285409|gb|EEN56135.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
Length = 457
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +YA+D L WE++ K +VV H
Sbjct: 385 IRLWEMERDRLTFTEGVLYNQFLSQPDFEMLRNYAKDLGVLLWENNPKRLMVVSKAGHDD 444
Query: 61 IREFLR 66
++ + +
Sbjct: 445 VKRYWK 450
>gi|357618296|gb|EHJ71332.1| putative TFIIH basal transcription factor complex p52 subunit
[Danaus plexippus]
Length = 603
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWES+ N+ T Y++F S+ F DY R L W + +VV H
Sbjct: 532 IRLWESERNRFTYTEGVVYNQFLSQAEFNVLRDYGRSSGALVWAADRTRTMVVARAAHDD 591
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 592 VKRYWKRYSK 601
>gi|296818081|ref|XP_002849377.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
gi|238839830|gb|EEQ29492.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
Length = 484
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + EF + FEA C YA + L W DS++M V + H
Sbjct: 414 IRLWQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HE 470
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 471 QVAAFLRSR 479
>gi|315041383|ref|XP_003170068.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
gi|311345102|gb|EFR04305.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
Length = 484
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + EF + FEA C YA + L W DS++M V + H
Sbjct: 414 IRLWQLERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HE 470
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 471 QVAAFLRSR 479
>gi|358057347|dbj|GAA96696.1| hypothetical protein E5Q_03367 [Mixia osmundae IAM 14324]
Length = 467
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQW-EDSKKMRLVVKAEIHI 59
I+LWE + N+ + YD+F S+ ++ CDYA+ + W + R + H+
Sbjct: 394 IKLWEREKNRVKTEPCFLYDDFRSQADYDLVCDYAKQIGAVLWLGEPGSRRFATTEDGHV 453
Query: 60 HIREFLR 66
+R F++
Sbjct: 454 QVRGFIQ 460
>gi|156378083|ref|XP_001630974.1| predicted protein [Nematostella vectensis]
gi|156218005|gb|EDO38911.1| predicted protein [Nematostella vectensis]
Length = 471
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE + ++ + T Y++F S+ FE YA D L W +S K +VV H
Sbjct: 400 VRLWEMERSRMKFTEGVLYNQFLSQADFEMLRKYAEDLGVLIWANSTKRVVVVSRSGHDD 459
Query: 61 IREFLRGQNK 70
++ F + Q +
Sbjct: 460 VKRFWKRQRQ 469
>gi|330797174|ref|XP_003286637.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
gi|325083385|gb|EGC36839.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
Length = 471
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE + N+ T+ Y+ FP+ D + A +A+++ W + + LVV +
Sbjct: 402 ILLWEQERNRITYTKSVLYNSFPTTDCYHATLKFAKEQDYYIWSNDQLKTLVVNENGNDP 461
Query: 61 IREFLR 66
IR F++
Sbjct: 462 IRNFIK 467
>gi|50291141|ref|XP_448003.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901305|sp|Q6FP41.1|TFB2_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49527314|emb|CAG60954.1| unnamed protein product [Candida glabrata]
Length = 504
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LW+ +L++ Y +F + F C YA+D L W+D +K +L V E +
Sbjct: 431 IKLWQLELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSREGNAQ 490
Query: 61 IREFLRGQNK 70
+ E+ + + K
Sbjct: 491 VLEYAKRKIK 500
>gi|71024427|ref|XP_762443.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
gi|46097692|gb|EAK82925.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
Length = 491
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + +F S+ FE +YA+ L W+D +K R V +
Sbjct: 422 IRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRNYAKQLGVLVWQDEEKRRFFVDEAGNEP 481
Query: 61 IREFLR 66
+R+++R
Sbjct: 482 VRDYIR 487
>gi|72074363|ref|XP_796111.1| PREDICTED: general transcription factor IIH subunit 4
[Strongylocentrotus purpuratus]
Length = 469
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 36/66 (54%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE + ++ T+ Y+EF S FE DYA+D L W+ + + ++V H
Sbjct: 396 VRLWELERDRLSFTQGIIYNEFLSLHDFEVLRDYAKDLGVLIWDSTARRIMIVSPAGHDS 455
Query: 61 IREFLR 66
++++ +
Sbjct: 456 VKKYWK 461
>gi|50310215|ref|XP_455127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901296|sp|Q6CLR2.1|TFB2_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49644263|emb|CAG97834.1| KLLA0F01056p [Kluyveromyces lactis]
Length = 496
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ +L++ + Y +F S ++ DYA+D L W++ KK V E +
Sbjct: 426 IRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQ 485
Query: 61 IREFLR 66
+ +F R
Sbjct: 486 VLDFHR 491
>gi|303272589|ref|XP_003055656.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463630|gb|EEH60908.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 476
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPS-RDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHI 59
IRLW D N+ + T Y +FP+ +FE + A++R W D ++L V+ E H
Sbjct: 403 IRLWSKDENRVKYTPCVLYCDFPTGTGMFEKVAEIAKERGLYLWGDPVGLKLAVREEGHE 462
Query: 60 HIREFLR 66
+++ +
Sbjct: 463 SMKDVFK 469
>gi|328863850|gb|EGG12949.1| hypothetical protein MELLADRAFT_46475 [Melampsora larici-populina
98AG31]
Length = 454
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + Y++F S +E +Y++ + WE+ + + V + H
Sbjct: 381 IRLWELEKNRVRDQEGYLYEDFKSVSDYEIVINYSKQIDIILWENPELKKFFVSLDGHTA 440
Query: 61 IREFLR 66
+REF++
Sbjct: 441 LREFIK 446
>gi|345569654|gb|EGX52519.1| hypothetical protein AOL_s00043g13 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + + ++T + + EF + F A C YA D L W D K L V H
Sbjct: 382 IRLWQIEGERMKVTSGYLFKEFATNAEFNAVCKYADDIGVLVWIDKNKGMLFVSK--HEQ 439
Query: 61 IREFLR 66
I +++R
Sbjct: 440 IADYIR 445
>gi|395332344|gb|EJF64723.1| transcription factor Tfb2 [Dichomitus squalens LYAD-421 SS1]
Length = 506
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + Y F S +E DYA+ + WE+ K E H++
Sbjct: 434 IRLWELERNRVKSQEGYLYTAFASHADYEWVLDYAKKLGVVLWENPSKRCFFGSVEGHMN 493
Query: 61 IREFL 65
IR ++
Sbjct: 494 IRGYI 498
>gi|410911638|ref|XP_003969297.1| PREDICTED: general transcription factor IIH subunit 4-like
[Takifugu rubripes]
Length = 465
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + T Y++F S+ FE D A+ L W+D+ +VV H
Sbjct: 394 IRLWELERDRLQFTEGVLYNQFLSQTDFEVLRDRAKSLGCLVWQDAAHRVMVVTLWGHSE 453
Query: 61 IREFLRGQ 68
+++F + Q
Sbjct: 454 VKKFWKRQ 461
>gi|348683175|gb|EGZ22990.1| hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae]
Length = 490
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE + N+ + +D F +++ +E+ DYA+D L W D RL +
Sbjct: 418 IYLWERERNRVQFMEGILFDGFNTKEDYESVRDYAKDLKVLTWSDPIHFRLSITTAGIDD 477
Query: 61 IREFLRGQ 68
+R +++ Q
Sbjct: 478 VRHYIQSQ 485
>gi|388581217|gb|EIM21527.1| transcription factor Tfb2 [Wallemia sebi CBS 633.66]
Length = 449
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + Y EF S+ +E +YA+ + W + K V E H
Sbjct: 365 IRLWELEKNRLKADDGVLYAEFRSQPDYEILLNYAKSYDCVLWSNDIKRMFFVTLEGHQI 424
Query: 61 IREFLR 66
+REF+R
Sbjct: 425 VREFVR 430
>gi|340371925|ref|XP_003384495.1| PREDICTED: general transcription factor IIH subunit 4-like
[Amphimedon queenslandica]
Length = 446
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ Y EF S +E YA D L W + ++ +V+ + H
Sbjct: 376 IKLWEIERNRLSFQEGILYSEFLSVTDYEKVKKYAEDLGVLLWSNRQRRLMVIHPDRHDE 435
Query: 61 IREFLRGQ 68
IR F + Q
Sbjct: 436 IRHFWKRQ 443
>gi|195126587|ref|XP_002007752.1| GI12214 [Drosophila mojavensis]
gi|193919361|gb|EDW18228.1| GI12214 [Drosophila mojavensis]
Length = 492
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S++ F DYA+ ++ L W++ + +VV+ H
Sbjct: 420 IKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSQNVLVWQNERTRTMVVQKNGHDD 479
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 480 VKRYWKKYSK 489
>gi|388857860|emb|CCF48525.1| probable TFB2-TFIIH subunit (transcription/repair factor) [Ustilago
hordei]
Length = 492
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + +F S+ FE +YA+ L WED K R V +
Sbjct: 423 IRLWEREKNRVVQNLGSLFTDFTSQFDFEEVRNYAKQLGVLVWEDESKRRFFVDEAGNEP 482
Query: 61 IREFLR 66
+R+++R
Sbjct: 483 VRDYIR 488
>gi|155371845|ref|NP_001094527.1| general transcription factor IIH subunit 4 [Bos taurus]
gi|148878127|gb|AAI46241.1| GTF2H4 protein [Bos taurus]
gi|296474219|tpg|DAA16334.1| TPA: general transcription factor IIH, polypeptide 4, 52kDa [Bos
taurus]
Length = 463
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLMFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|348542188|ref|XP_003458568.1| PREDICTED: general transcription factor IIH subunit 4 [Oreochromis
niloticus]
Length = 461
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + T Y++F S+ FE D A+ L W+D +VV + H
Sbjct: 390 IRLWELERDRLQFTEGVLYNQFLSQADFEVLRDRAQGLGCLVWQDVAHRVMVVTPQGHSE 449
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 450 VKRFWKRQ 457
>gi|350639203|gb|EHA27557.1| transcription factor Tfb2 [Aspergillus niger ATCC 1015]
Length = 478
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + +F S +EA C YA + L W+ D K+M V + H
Sbjct: 412 IRLWQLERDRVKATSGFLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HE 468
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 469 QVAAFLRSR 477
>gi|307106040|gb|EFN54287.1| hypothetical protein CHLNCDRAFT_25123 [Chlorella variabilis]
Length = 458
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIH 58
IRLW +L + + YD+F S++++ A +AR + L + + +LVV++ H
Sbjct: 385 IRLWAQELKRLQEKNATLYDKFESKELYVGAVAHARQLNALLYSCEDRRQLVVESAFH 442
>gi|145248676|ref|XP_001400677.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus niger CBS 513.88]
gi|134081344|emb|CAK41847.1| unnamed protein product [Aspergillus niger]
Length = 478
Score = 38.5 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + +F S +EA C YA + L W+ D K+M V + H
Sbjct: 412 IRLWQLERDRVKATSGFLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HE 468
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 469 QVAAFLRSR 477
>gi|392564310|gb|EIW57488.1| transcription factor Tfb2 [Trametes versicolor FP-101664 SS1]
Length = 477
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + Y F S+ +E +YA+ + WE++ + E H +
Sbjct: 404 IRLWELEKNRMKSQEGYLYTAFASQADYEYVLNYAKQLDVVLWENASRRCFFGSVEGHAN 463
Query: 61 IREFL 65
IR F+
Sbjct: 464 IRGFI 468
>gi|145351329|ref|XP_001420034.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580267|gb|ABO98327.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 495
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAAC-DYARDRSGLQWEDSKKMRLVVKAEIHI 59
IRLW D+ + E Y +FP F A A R L W D RL V+A H
Sbjct: 420 IRLWARDMERMEAEECVLYCDFPQAGTFYGAVVSEAEKRGALLWRDDASRRLTVRASAHD 479
Query: 60 HIR 62
++
Sbjct: 480 EMK 482
>gi|358370616|dbj|GAA87227.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + +F S +EA C YA + L W+ D K+M V + H
Sbjct: 412 IRLWQLERDRVKATSGFLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HE 468
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 469 QVAAFLRSR 477
>gi|353231086|emb|CCD77504.1| putative tfiih, polypeptide [Schistosoma mansoni]
Length = 486
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ Y++F FE DYA+ L WE+ ++ +VV H
Sbjct: 416 IRLWELERDRFLFQEGCLYEQFSRNTDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHED 475
Query: 61 IREFLR 66
+R+F +
Sbjct: 476 VRKFWK 481
>gi|256086358|ref|XP_002579367.1| tfiih polypeptide [Schistosoma mansoni]
Length = 486
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ Y++F FE DYA+ L WE+ ++ +VV H
Sbjct: 416 IRLWELERDRFLFQEGCLYEQFSRNTDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHED 475
Query: 61 IREFLR 66
+R+F +
Sbjct: 476 VRKFWK 481
>gi|119179887|ref|XP_001241468.1| hypothetical protein CIMG_08631 [Coccidioides immitis RS]
gi|392866653|gb|EAS30172.2| transcription factor Tfb2 [Coccidioides immitis RS]
Length = 487
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + ++ + T + +F S FEA C YA + L W+ K+ V H
Sbjct: 418 IRLWQLERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTR--HEQ 475
Query: 61 IREFLRGQ 68
+ FLR +
Sbjct: 476 VAAFLRSR 483
>gi|414589532|tpg|DAA40103.1| TPA: hypothetical protein ZEAMMB73_417245 [Zea mays]
Length = 877
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 9/48 (18%)
Query: 5 ESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLV 52
++DLN+ EM + Y++FPS+ ARD L +DSK+MRL+
Sbjct: 824 QTDLNRVEMIPSYLYEDFPSK---------ARDNGYLLCDDSKRMRLI 862
>gi|303321033|ref|XP_003070511.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110207|gb|EER28366.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036051|gb|EFW17991.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Coccidioides posadasii str. Silveira]
Length = 487
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + ++ + T + +F S FEA C YA + L W+ K+ V H
Sbjct: 418 IRLWQLERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTR--HEQ 475
Query: 61 IREFLRGQ 68
+ FLR +
Sbjct: 476 VAAFLRSR 483
>gi|157113167|ref|XP_001651923.1| TFIIH basal transcription factor complex p52 subunit [Aedes
aegypti]
gi|108877858|gb|EAT42083.1| AAEL006356-PA [Aedes aegypti]
Length = 487
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ T Y++F S+ F DYA+ + W++ + +VV H
Sbjct: 415 IKLWENERNRFTYTEGVVYNQFLSQGDFNTLRDYAQSIGVMTWQNERTRTMVVTKNGHDD 474
Query: 61 IREFLRGQNK 70
++ F + +K
Sbjct: 475 VKRFWKRYSK 484
>gi|147899535|ref|NP_001085110.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
laevis]
gi|47939830|gb|AAH72322.1| MGC83106 protein [Xenopus laevis]
Length = 455
Score = 38.5 bits (88), Expect = 0.56, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + Y++F S+ FE +YARD L +E+ K +VV H
Sbjct: 384 IRLWELERDRLRFSEGVLYNQFLSQVDFELLRNYARDLGVLVFENPAKRVMVVTPGGHSD 443
Query: 61 IREFLRGQNK 70
++ F + Q +
Sbjct: 444 VKRFWKRQKQ 453
>gi|350413829|ref|XP_003490125.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
impatiens]
Length = 467
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ + Y +F S+ FE D+A L W++ +K +VV H
Sbjct: 395 IKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQNERKRTIVVTKAGHDD 454
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 455 VKKFWKRYSK 464
>gi|255936123|ref|XP_002559088.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583708|emb|CAP91723.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 483
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ T + +F S ++A C YA + L W+ D K+M V + H
Sbjct: 413 IRLWQLERDRLRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFVTR---HE 469
Query: 60 HIREFLRGQ 68
+ FLR Q
Sbjct: 470 QVAAFLRSQ 478
>gi|339521903|gb|AEJ84116.1| general transcription factor IIH subunit 4 [Capra hircus]
Length = 463
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|431907067|gb|ELK11185.1| General transcription factor IIH subunit 4 [Pteropus alecto]
Length = 447
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 376 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 435
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 436 VKRFWKRQ 443
>gi|359320969|ref|XP_003639474.1| PREDICTED: general transcription factor IIH subunit 4-like [Canis
lupus familiaris]
Length = 463
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|47059175|ref|NP_997666.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|46237651|emb|CAE84027.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|117558335|gb|AAI27470.1| General transcription factor II H, polypeptide 4 [Rattus
norvegicus]
Length = 463
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|6754094|ref|NP_034494.1| general transcription factor IIH subunit 4 [Mus musculus]
gi|18202124|sp|O70422.1|TF2H4_MOUSE RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|2997755|gb|AAC08594.1| TFIIH transcription/DNA repair factor p52 subunit [Mus musculus]
gi|15215027|gb|AAH12638.1| Gtf2h4 protein [Mus musculus]
gi|26348003|dbj|BAC37650.1| unnamed protein product [Mus musculus]
gi|74194835|dbj|BAE26009.1| unnamed protein product [Mus musculus]
gi|74222199|dbj|BAE26910.1| unnamed protein product [Mus musculus]
Length = 463
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|403308524|ref|XP_003944708.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 1752
Score = 38.1 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 574 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 633
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 634 VKRFWKRQ 641
>gi|440896165|gb|ELR48176.1| General transcription factor IIH subunit 4 [Bos grunniens mutus]
Length = 463
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|426250586|ref|XP_004019016.1| PREDICTED: general transcription factor IIH subunit 4 [Ovis aries]
Length = 463
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|178056954|ref|NP_001116592.1| general transcription factor IIH subunit 4 [Sus scrofa]
gi|41529162|dbj|BAD08424.1| general transcription factor IIH, polypeptide 4 [Sus scrofa]
gi|47496805|dbj|BAD08426.2| general transcription factor IIH, polypeptide 4 [Sus scrofa]
Length = 463
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|410958682|ref|XP_003985944.1| PREDICTED: general transcription factor IIH subunit 4 [Felis catus]
Length = 463
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|344307658|ref|XP_003422497.1| PREDICTED: general transcription factor IIH subunit 4 [Loxodonta
africana]
Length = 463
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|281337500|gb|EFB13084.1| hypothetical protein PANDA_018954 [Ailuropoda melanoleuca]
Length = 463
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|338718559|ref|XP_003363845.1| PREDICTED: general transcription factor IIH subunit 4 [Equus
caballus]
Length = 463
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|4504201|ref|NP_001508.1| general transcription factor IIH subunit 4 [Homo sapiens]
gi|113865855|ref|NP_001038968.1| general transcription factor IIH subunit 4 [Pan troglodytes]
gi|114050799|ref|NP_001040607.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|297677636|ref|XP_002816695.1| PREDICTED: general transcription factor IIH subunit 4 isoform 2
[Pongo abelii]
gi|332245940|ref|XP_003272109.1| PREDICTED: general transcription factor IIH subunit 4 [Nomascus
leucogenys]
gi|426352309|ref|XP_004043656.1| PREDICTED: general transcription factor IIH subunit 4 [Gorilla
gorilla gorilla]
gi|17380328|sp|Q92759.1|TF2H4_HUMAN RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|38503276|sp|P60027.1|TF2H4_PANTR RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|1514597|emb|CAA68870.1| transcription factor TFIIH [Homo sapiens]
gi|13436278|gb|AAH04935.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|15277224|dbj|BAB63317.1| Transcription factor II H [Homo sapiens]
gi|16740884|gb|AAH16302.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|21655317|gb|AAM64222.1| general transcription factor IIH, polypeptide 4 (52kD subunit)
[Homo sapiens]
gi|27544403|dbj|BAC54936.1| transcription factor II H [Homo sapiens]
gi|30583481|gb|AAP35985.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|32127781|dbj|BAC78171.1| transcription factor II H [Pan troglodytes]
gi|55700798|dbj|BAD69753.1| general transcription factor IIH, polypeptide 4, 52kDa [Macaca
mulatta]
gi|60655839|gb|AAX32483.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|60655841|gb|AAX32484.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|86197966|dbj|BAE78622.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|90960934|dbj|BAE92819.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|90960936|dbj|BAE92820.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|114306784|dbj|BAF31271.1| TFIIH protein [Homo sapiens]
gi|119623752|gb|EAX03347.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|123992979|gb|ABM84091.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|123999907|gb|ABM87462.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|355561507|gb|EHH18139.1| General transcription factor IIH polypeptide 4, partial [Macaca
mulatta]
gi|355748409|gb|EHH52892.1| General transcription factor IIH polypeptide 4 [Macaca
fascicularis]
gi|380812138|gb|AFE77944.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|380812140|gb|AFE77945.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|383408563|gb|AFH27495.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|410214852|gb|JAA04645.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410250640|gb|JAA13287.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410290944|gb|JAA24072.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410352807|gb|JAA43007.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
Length = 462
Score = 38.1 bits (87), Expect = 0.68, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 391 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 450
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 451 VKRFWKRQ 458
>gi|397471696|ref|XP_003807420.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Pan paniscus]
Length = 1673
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 496 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 555
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 556 VKRFWKRQ 563
>gi|395831929|ref|XP_003789035.1| PREDICTED: general transcription factor IIH subunit 4 [Otolemur
garnettii]
Length = 463
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|170039509|ref|XP_001847575.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
gi|167863052|gb|EDS26435.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
Length = 492
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ T Y++F S+ F DYA+ + W++ + +VV H
Sbjct: 420 IKLWENERNRFTYTEGVVYNQFLSQGDFNTLRDYAQSIGVMIWQNERTRTMVVTKNGHDD 479
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 480 VKKFWKRYSK 489
>gi|390461382|ref|XP_002746360.2| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Callithrix jacchus]
Length = 1675
Score = 38.1 bits (87), Expect = 0.70, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 497 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 556
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 557 VKRFWKRQ 564
>gi|402866404|ref|XP_003897374.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial,
partial [Papio anubis]
Length = 1647
Score = 38.1 bits (87), Expect = 0.71, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 470 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 529
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 530 VKRFWKRQ 537
>gi|62751795|ref|NP_001015845.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
gi|58475911|gb|AAH90134.1| general transcription factor II H, polypeptide 4 [Xenopus
(Silurana) tropicalis]
gi|89272862|emb|CAJ82116.1| transcription factor tfb2 [Xenopus (Silurana) tropicalis]
gi|114107989|gb|AAI22900.1| gtf2h4 protein [Xenopus (Silurana) tropicalis]
Length = 455
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + Y++F S+ FE +YARD L +E+ K +VV H
Sbjct: 384 IRLWELERDRLRFSEGVLYNQFLSQVDFELLRNYARDLGVLVFENPAKRVMVVTPGGHSD 443
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 444 VKRFWKRQ 451
>gi|62088538|dbj|BAD92716.1| VARS2L protein variant [Homo sapiens]
Length = 1653
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 476 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 535
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 536 VKRFWKRQ 543
>gi|195378984|ref|XP_002048261.1| GJ11446 [Drosophila virilis]
gi|194155419|gb|EDW70603.1| GJ11446 [Drosophila virilis]
Length = 492
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S++ F DYA+ + L W++ + +VV+ H
Sbjct: 420 IKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSINMLVWQNERTRTMVVQKNGHDD 479
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 480 VKRYWKKYSK 489
>gi|76154655|gb|AAX26095.2| SJCHGC05044 protein [Schistosoma japonicum]
Length = 214
Score = 38.1 bits (87), Expect = 0.74, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ Y+ F FE DYA++ L WE+ ++ +VV H
Sbjct: 144 IRLWELERDRFVFQEGCLYEHFSRNTDFELVRDYAKNIGVLLWENPERRLMVVSKSGHED 203
Query: 61 IREFLR 66
+R+F +
Sbjct: 204 VRKFWK 209
>gi|351713119|gb|EHB16038.1| General transcription factor IIH subunit 4 [Heterocephalus glaber]
Length = 463
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|294660113|ref|XP_002777731.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
gi|218511847|sp|Q6BGW8.2|TFB2_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|199434471|emb|CAR66042.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
Length = 515
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAE 56
I+LW+ +L++ + + + +F S+ FEA +YA + L W + KM+ V +
Sbjct: 445 IKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLLWSNKSKMKFFVTKD 500
>gi|390370355|ref|XP_783140.3| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Strongylocentrotus purpuratus]
Length = 180
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE + ++ T+ Y+EF S FE DYA+D L W+ + + ++V H
Sbjct: 116 VRLWELERDRLSFTQGIIYNEFLSLHDFEVLRDYAKDLGVLIWDSTARRIMIVSPAGHDS 175
Query: 61 IREF 64
++++
Sbjct: 176 VKKY 179
>gi|344252968|gb|EGW09072.1| General transcription factor IIH subunit 4 [Cricetulus griseus]
Length = 463
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|48102983|ref|XP_395476.1| PREDICTED: general transcription factor IIH subunit 4 [Apis
mellifera]
Length = 467
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ + Y +F S+ FE D+A L W+ +K +VV H
Sbjct: 395 IKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVVTKAGHDD 454
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 455 VKKFWKRYSK 464
>gi|380014187|ref|XP_003691121.1| PREDICTED: general transcription factor IIH subunit 4-like [Apis
florea]
Length = 467
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ + Y +F S+ FE D+A L W+ +K +VV H
Sbjct: 395 IKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVVTKAGHDD 454
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 455 VKKFWKRYSK 464
>gi|301786953|ref|XP_002928911.1| PREDICTED: LOW QUALITY PROTEIN: valyl-tRNA synthetase,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 1637
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 457 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 516
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 517 VKRFWKRQ 524
>gi|301098671|ref|XP_002898428.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262105199|gb|EEY63251.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 483
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE + N+ + +D F +++ +E+ DYA+ L W D RL +
Sbjct: 411 IYLWERERNRVQFLEGILFDGFNTKEDYESVRDYAKGLMVLTWSDPIHFRLSIATAGIDE 470
Query: 61 IREFLRGQ 68
+R F++ Q
Sbjct: 471 VRHFIQNQ 478
>gi|425777809|gb|EKV15965.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum PHI26]
gi|425782577|gb|EKV20476.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum Pd1]
Length = 382
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ T + +F S ++A C YA + L W+ D K+M V + H
Sbjct: 312 IRLWQLERDRLRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFVTR---HE 368
Query: 60 HIREFLRGQ 68
+ FLR Q
Sbjct: 369 QVAAFLRSQ 377
>gi|393221241|gb|EJD06726.1| transcription factor Tfb2 [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 37.7 bits (86), Expect = 0.86, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + Y F S+ +E YA+ + WE++ K E H +
Sbjct: 391 IRLWELERNRLKSQEGYLYTAFASQADYEFVLKYAKQLGVVLWENAAKRCFFGSLEGHAN 450
Query: 61 IREFL 65
IR F+
Sbjct: 451 IRGFI 455
>gi|340710070|ref|XP_003393621.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
terrestris]
Length = 467
Score = 37.7 bits (86), Expect = 0.88, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ Y +F S+ FE D+A L W++ +K +VV H
Sbjct: 395 IKLWENERNRFIFNEGVLYSQFLSQTDFEVLRDHALSTGVLIWQNERKRTIVVTKAGHDD 454
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 455 VKKFWKRYSK 464
>gi|383852611|ref|XP_003701820.1| PREDICTED: general transcription factor IIH subunit 4-like
[Megachile rotundata]
Length = 467
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ + Y +F S+ FE D+A L W+ +K +VV H
Sbjct: 395 IKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVVTKAGHDD 454
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 455 VKKFWKRYSK 464
>gi|307177222|gb|EFN66420.1| General transcription factor IIH subunit 4 [Camponotus floridanus]
Length = 467
Score = 37.7 bits (86), Expect = 0.97, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ + Y +F S+ FE D+A L W+ +K +VV H
Sbjct: 395 IKLWENERNRFLFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVVTKTGHDD 454
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 455 VKKFWKRYSK 464
>gi|150863860|ref|XP_001382481.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
gi|149385116|gb|ABN64452.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
Length = 515
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LW+ +L++ + + + +F ++ F+ +YA + L W D K + V AE
Sbjct: 442 IKLWQLELDRIQTFDGYLFKDFSNQQEFDTLSNYASEVGVLVWSDKIKKKFFVTAEGMTQ 501
Query: 61 IREF 64
+ EF
Sbjct: 502 VAEF 505
>gi|417401351|gb|JAA47565.1| Putative rna polymer [Desmodus rotundus]
Length = 463
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHGD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>gi|195162678|ref|XP_002022181.1| GL25529 [Drosophila persimilis]
gi|198464237|ref|XP_001353141.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
gi|194104142|gb|EDW26185.1| GL25529 [Drosophila persimilis]
gi|198149631|gb|EAL30642.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
Length = 494
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S++ F DYA+ L W++ + +VV+ H
Sbjct: 422 IKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSIHVLVWQNERTRTMVVQKHGHDD 481
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 482 VKRYWKKYSK 491
>gi|443688956|gb|ELT91478.1| hypothetical protein CAPTEDRAFT_18660 [Capitella teleta]
Length = 463
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ Y++F S+ FE DYA+D L +E+ + +VV H
Sbjct: 393 IRLWELERDRFHFNEGVLYNQFLSQTDFEVLRDYAKDLGVLSYENIPRRLMVVTRAGHDD 452
Query: 61 IREFLR 66
++ F +
Sbjct: 453 VKRFWK 458
>gi|443894209|dbj|GAC71558.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Pseudozyma antarctica
T-34]
Length = 491
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + +F S+ F +YA L W D K RL V +
Sbjct: 422 IRLWEREKNRVQQNLGSLFTDFTSQPDFAEVRNYASQLGVLVWHDEPKRRLFVDEAGNEP 481
Query: 61 IREFLR 66
+R+++R
Sbjct: 482 VRDYIR 487
>gi|193633122|ref|XP_001945987.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 471
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE++ N+ T Y + + +E +YA D L W D ++ +VV + H
Sbjct: 398 IYLWENERNRLTYTDGVLYSNINTPNDYETIKNYAADIGALVWCDERRRNIVVSTDGHDD 457
Query: 61 IREFLRGQNK 70
+R+F + Q K
Sbjct: 458 VRKFWKKQPK 467
>gi|169784197|ref|XP_001826560.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus oryzae RIB40]
gi|238508739|ref|XP_002385554.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|83775305|dbj|BAE65427.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688446|gb|EED44799.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|391868531|gb|EIT77745.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 480
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + +F S +EA C YA + L W+ D K+M V + H
Sbjct: 414 IRLWQLERDRVKATPGFLFKDFVSLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HE 470
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 471 QVAAFLRSR 479
>gi|121714341|ref|XP_001274781.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
gi|119402935|gb|EAW13355.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
Length = 478
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + +F S +EA C YA + L W+ D K+M V + H
Sbjct: 412 IRLWQLERDRVKATPGFLFKDFVSLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HE 468
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 469 QVAAFLRSR 477
>gi|403417620|emb|CCM04320.1| predicted protein [Fibroporia radiculosa]
Length = 472
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + Y F S+ +E +YA+ + WE+ + + H +
Sbjct: 400 IRLWELERNRVKSEEGYLYTSFASQADYEYVLNYAKQLDVVLWENPSRRSFFGSLDGHAN 459
Query: 61 IREFL 65
IR F+
Sbjct: 460 IRGFI 464
>gi|409048320|gb|EKM57798.1| hypothetical protein PHACADRAFT_171015 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + Y F S+ +E +YA+ + WE S + E H +
Sbjct: 400 IRLWELEKNRMKSQEGYLYTAFASQADYEYVLNYAKQLGVVLWESSGRRCFFGTLEGHPN 459
Query: 61 IREFL 65
IR F+
Sbjct: 460 IRGFI 464
>gi|268534706|ref|XP_002632484.1| Hypothetical protein CBG13719 [Caenorhabditis briggsae]
Length = 482
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + + ++ + Y F S D + YA++R L W + ++ ++V E H
Sbjct: 400 IRLWEDERRRMDLKDAYIYSHFESDDEYHGVVRYAQERGILLWANPQQKLVIVNEEGHEA 459
Query: 61 IRE 63
+R+
Sbjct: 460 VRQ 462
>gi|194749905|ref|XP_001957376.1| GF10392 [Drosophila ananassae]
gi|190624658|gb|EDV40182.1| GF10392 [Drosophila ananassae]
Length = 497
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S++ F DYA+ L W++ + +VV+ H
Sbjct: 425 IKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSIHVLVWQNERTRTMVVQKNGHDD 484
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 485 VKRYWKKYSK 494
>gi|119486893|ref|XP_001262366.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
gi|119410523|gb|EAW20469.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
Length = 468
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + +F + +EA C YA + L W+ D K+M V + H
Sbjct: 401 IRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HH 457
Query: 60 HIREFLRGQNK 70
+ FL+ + K
Sbjct: 458 QVAAFLKSRRK 468
>gi|70982185|ref|XP_746621.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2) [Aspergillus fumigatus Af293]
gi|66844244|gb|EAL84583.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus Af293]
gi|159122143|gb|EDP47265.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus A1163]
Length = 479
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + +F + +EA C YA + L W+ D K+M V + H
Sbjct: 412 IRLWQLERDRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HH 468
Query: 60 HIREFLRGQNK 70
+ FL+ + K
Sbjct: 469 QVAAFLKSRRK 479
>gi|307212060|gb|EFN87943.1| General transcription factor IIH subunit 4 [Harpegnathos saltator]
Length = 467
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE++ N+ + Y +F S+ FE D+A L W++ +K +VV H
Sbjct: 395 IMLWENERNRFLFSEGVLYSQFLSQTDFEVLRDHALTTGVLIWQNERKRTIVVTKAGHDD 454
Query: 61 IREFLRGQNK 70
I++F + +K
Sbjct: 455 IKKFWKRYSK 464
>gi|396080769|gb|AFN82390.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
romaleae SJ-2008]
Length = 414
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I +WES N+ M + Y F + ++ ++ +RS L D K +VVK E H
Sbjct: 346 IMIWESKRNRIFMVPGYIYSNFLNLSDYQRVLEFCTERSYLIESDVGKRMIVVKLEGHEL 405
Query: 61 IREFLR 66
+REF++
Sbjct: 406 VREFIK 411
>gi|67541703|ref|XP_664619.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|40742471|gb|EAA61661.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|259483674|tpe|CBF79257.1| TPA: TFIIH and nucleotide excision repair factor 3 complexes
subunit (Tfb2), putative (AFU_orthologue; AFUA_4G04360)
[Aspergillus nidulans FGSC A4]
Length = 482
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + ++ + T + +F S +EA C YA + L W+ D K+M V + H
Sbjct: 416 IRLWQLERDRVKATAGFLFKDFVSLAEYEAPCRYAEEIGVLIWKSDRKRMFFVTR---HE 472
Query: 60 HIREFLRGQ 68
+ FLR +
Sbjct: 473 QVAAFLRSR 481
>gi|325181222|emb|CCA15636.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 1033
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE + N+ + +D F S++ FE +YA+ + L W D ++L + +
Sbjct: 449 IYLWEKERNRIKFLEGILFDGFNSKEEFEQVREYAQKQRFLTWTDPIHLKLAISSNGIES 508
Query: 61 IREFLR 66
+R F++
Sbjct: 509 VRNFIQ 514
>gi|62896773|dbj|BAD96327.1| general transcription factor IIH, polypeptide 4, 52kDa variant
[Homo sapiens]
Length = 462
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 391 IRLWELGRDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 450
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 451 VKRFWKRQ 458
>gi|336370852|gb|EGN99192.1| hypothetical protein SERLA73DRAFT_90464 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383609|gb|EGO24758.1| hypothetical protein SERLADRAFT_361686 [Serpula lacrymans var.
lacrymans S7.9]
Length = 469
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + Y +F S +E +YA+ + WE++ + + H +
Sbjct: 397 IRLWELERNRLKSEEGYLYKDFGSHADYEYVLNYAKQLDVVLWENTSRRCFFGSLDGHTN 456
Query: 61 IREFL 65
IR F+
Sbjct: 457 IRGFI 461
>gi|41053973|ref|NP_956221.1| general transcription factor IIH subunit 4 [Danio rerio]
gi|39794736|gb|AAH64301.1| General transcription factor IIH, polypeptide 4 [Danio rerio]
Length = 466
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + T Y++F S+ FE D A+ L W++ +VV H
Sbjct: 395 IRLWELEKDRLQFTEGVLYNQFLSQADFEVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSE 454
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 455 VKRFWKRQ 462
>gi|325181847|emb|CCA16302.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 473
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE + N+ + +D F S++ FE +YA+ + L W D ++L + +
Sbjct: 402 IYLWEKERNRIKFLEGILFDGFNSKEEFEQVREYAQKQRFLTWTDPIHLKLAISSNGIES 461
Query: 61 IREFLR 66
+R F++
Sbjct: 462 VRNFIQ 467
>gi|195441209|ref|XP_002068409.1| GK20438 [Drosophila willistoni]
gi|194164494|gb|EDW79395.1| GK20438 [Drosophila willistoni]
Length = 512
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S F DYA+ L W++ K +VV+ H
Sbjct: 440 IKLWEMERNRFTYTEGVVYNQFLSTTDFVTLRDYAQSIQVLVWQNEKTRTMVVQKNGHDD 499
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 500 VKRYWKKYSK 509
>gi|195019521|ref|XP_001984999.1| GH16811 [Drosophila grimshawi]
gi|193898481|gb|EDV97347.1| GH16811 [Drosophila grimshawi]
Length = 493
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S+ F DYA+ + L W++ + +VV+ H
Sbjct: 421 IKLWELERNRFTYTEGVVYNQFLSQTDFVTLRDYAQSINMLVWQNERTRTMVVQKNGHDD 480
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 481 VKRYWKKYSK 490
>gi|391335225|ref|XP_003741996.1| PREDICTED: general transcription factor IIH subunit 4-like
[Metaseiulus occidentalis]
Length = 457
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
+RLWE + ++ + Y +F + FE +YARD L++E+ +K LVV
Sbjct: 385 LRLWELERDRFKFGESVLYSQFQTTGDFEMLRNYARDIGVLKYENPQKRFLVVSKSGDAE 444
Query: 61 IREF 64
+R+F
Sbjct: 445 VRQF 448
>gi|327266348|ref|XP_003217968.1| PREDICTED: general transcription factor IIH subunit 4-like [Anolis
carolinensis]
Length = 460
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + Y++F S+ FE D+AR+ L +E+ K +VV H
Sbjct: 389 IRLWELERDRLRFSEGVLYNQFLSQVDFELLRDHARELGVLIFENPSKRLMVVTPAGHSD 448
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 449 VKRFWKRQ 456
>gi|395533817|ref|XP_003768949.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Sarcophilus harrisii]
Length = 1638
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + Y++F S+ FE +AR+ L +E++ K +VV H
Sbjct: 459 IRLWELERDRLRFSEGVLYNQFLSQVDFELLLSHARELGVLVFENTAKRLMVVTPAGHSD 518
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 519 VKRFWKRQ 526
>gi|334323685|ref|XP_003340422.1| PREDICTED: valyl-tRNA synthetase, mitochondrial-like [Monodelphis
domestica]
Length = 1641
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ + Y++F S+ FE +AR+ L +E++ K +VV H
Sbjct: 423 IRLWELERDRLRFSEGVLYNQFLSQVDFELLLSHARELGVLVFENTAKRLMVVTPAGHSD 482
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 483 VKRFWKRQ 490
>gi|149031822|gb|EDL86757.1| rCG41794 [Rattus norvegicus]
Length = 209
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 138 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 197
Query: 61 IREF 64
++ F
Sbjct: 198 VKRF 201
>gi|195477975|ref|XP_002086439.1| GE22863 [Drosophila yakuba]
gi|194186229|gb|EDW99840.1| GE22863 [Drosophila yakuba]
Length = 499
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S F DYA+ L W++ + +VV+ H
Sbjct: 427 IKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDD 486
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 487 VKRYWKKYSK 496
>gi|194872905|ref|XP_001973103.1| GG13537 [Drosophila erecta]
gi|190654886|gb|EDV52129.1| GG13537 [Drosophila erecta]
Length = 499
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S F DYA+ L W++ + +VV+ H
Sbjct: 427 IKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDD 486
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 487 VKRYWKKYSK 496
>gi|195590491|ref|XP_002084979.1| GD12553 [Drosophila simulans]
gi|194196988|gb|EDX10564.1| GD12553 [Drosophila simulans]
Length = 500
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S F DYA+ L W++ + +VV+ H
Sbjct: 428 IKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDD 487
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 488 VKRYWKKYSK 497
>gi|195327811|ref|XP_002030611.1| GM24480 [Drosophila sechellia]
gi|194119554|gb|EDW41597.1| GM24480 [Drosophila sechellia]
Length = 499
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S F DYA+ L W++ + +VV+ H
Sbjct: 427 IKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDD 486
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 487 VKRYWKKYSK 496
>gi|21357821|ref|NP_648780.1| marionette [Drosophila melanogaster]
gi|7294263|gb|AAF49614.1| marionette [Drosophila melanogaster]
gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
Length = 499
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S F DYA+ L W++ + +VV+ H
Sbjct: 427 IKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDD 486
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 487 VKRYWKKYSK 496
>gi|171681598|ref|XP_001905742.1| hypothetical protein [Podospora anserina S mat+]
gi|170940758|emb|CAP66407.1| unnamed protein product [Podospora anserina S mat+]
Length = 540
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVV-KAEIHI 59
IRLW+ + + + T + +F S + + +YA + L W+D +K V K E
Sbjct: 471 IRLWQLESQRMQKTPGFQFKDFESVEEYRQLAEYATEIGVLVWKDDRKGTFFVSKVE--- 527
Query: 60 HIREFLRGQNK 70
IREFL+ + K
Sbjct: 528 QIREFLKARKK 538
>gi|242794214|ref|XP_002482325.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
gi|218718913|gb|EED18333.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
Length = 481
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAE 56
IRLW+ + ++ + T + EF S +E C YA + L W+ D K+M V + E
Sbjct: 414 IRLWQLERDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 470
>gi|406862938|gb|EKD15987.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 421
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAEIHI 59
IRLW+ + + + T + EF ++ +E YA + L W+ D+K+M V + H
Sbjct: 349 IRLWQIENERMKATAGFLFKEFETQKEYEGCARYADENGVLVWKNDAKRMFFVTR---HE 405
Query: 60 HIREFLRGQ 68
+R++L+ +
Sbjct: 406 QLRDYLKSR 414
>gi|31201525|ref|XP_309710.1| AGAP010984-PA [Anopheles gambiae str. PEST]
gi|21293295|gb|EAA05440.1| AGAP010984-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ T Y++F S+ F DYA+ + W++ + +VV H
Sbjct: 429 IKLWENERNRFTYTEGVVYNQFLSQADFITLRDYAQSIGVMIWQNERIRTMVVTKNGHDD 488
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 489 VKKFWKRYSK 498
>gi|212535854|ref|XP_002148083.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070482|gb|EEA24572.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 481
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAE 56
IRLW+ + ++ + T + EF S +E C YA + L W+ D K+M V + E
Sbjct: 414 IRLWQLERDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 470
>gi|401825125|ref|XP_003886658.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
gi|395459803|gb|AFM97677.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
Length = 414
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I +WES N+ M + Y F + ++ ++ +RS L D K +VVK E H
Sbjct: 346 IMIWESKRNRIFMAPGYIYSNFLNLSDYQRVLEFCTERSYLIESDVDKRMIVVKVEGHEL 405
Query: 61 IREFLR 66
++EF++
Sbjct: 406 VKEFIK 411
>gi|355693906|gb|AER99491.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 143
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 72 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 131
Query: 61 IREF 64
++ F
Sbjct: 132 VKRF 135
>gi|449540295|gb|EMD31288.1| hypothetical protein CERSUDRAFT_119839 [Ceriporiopsis subvermispora
B]
Length = 412
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + Y F S+ +E +YA+ + WE + E H +
Sbjct: 340 IRLWELEKNRVKSQEGYLYTAFASQADYEYVLNYAKQLDVVIWESPTRRCFFGSLEGHSN 399
Query: 61 IREFL 65
IR F+
Sbjct: 400 IRGFI 404
>gi|389749775|gb|EIM90946.1| transcription factor Tfb2 [Stereum hirsutum FP-91666 SS1]
Length = 494
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + Y F S+ +E YA+ + WE+ K E H +
Sbjct: 410 IRLWELERNRLKSQEGFLYTAFASQADYEYVLTYAKQLDVVLWENPTKRCFFGTMEGHAN 469
Query: 61 IREFL 65
IR F+
Sbjct: 470 IRGFI 474
>gi|212535856|ref|XP_002148084.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070483|gb|EEA24573.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 422
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWE-DSKKMRLVVKAE 56
IRLW+ + ++ + T + EF S +E C YA + L W+ D K+M V + E
Sbjct: 355 IRLWQLERDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 411
>gi|221120480|ref|XP_002159945.1| PREDICTED: general transcription factor IIH subunit 4-like [Hydra
magnipapillata]
Length = 458
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 38/66 (57%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + ++ ++ Y++F S+ FE +A +++ L W +++K +VV H
Sbjct: 388 IKLWEMERDRLRYSQGVLYNQFLSQSDFEMLRKFADEKNHLLWANNQKRLMVVSKSGHED 447
Query: 61 IREFLR 66
++++ +
Sbjct: 448 VKKYWK 453
>gi|195477962|ref|XP_002086438.1| GE22864 [Drosophila yakuba]
gi|194186228|gb|EDW99839.1| GE22864 [Drosophila yakuba]
Length = 241
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S F DYA+ L W++ + +VV+ H
Sbjct: 169 IKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDD 228
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 229 VKRYWKKYSK 238
>gi|345492819|ref|XP_001602702.2| PREDICTED: general transcription factor IIH subunit 4-like [Nasonia
vitripennis]
Length = 428
Score = 35.4 bits (80), Expect = 4.8, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE++ N+ + Y +F S+ FE D+A + W+ +K +VV H
Sbjct: 356 IKLWENERNRFIFSEGVLYSQFHSQIDFEVLRDHAVSLGVMIWQSDRKRTMVVTKTGHDD 415
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 416 VKKFWKRYSK 425
>gi|430812024|emb|CCJ30551.1| unnamed protein product [Pneumocystis jirovecii]
Length = 319
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKK 48
IRLWE + N+ + T + + +F S FE A YA + + + WE K
Sbjct: 248 IRLWEMERNRLKATEGYLFRDFNSNSDFELALKYANELNVVVWEAPSK 295
>gi|91094191|ref|XP_971121.1| PREDICTED: similar to TFIIH basal transcription factor complex p52
subunit [Tribolium castaneum]
gi|270010854|gb|EFA07302.1| hypothetical protein TcasGA2_TC015892 [Tribolium castaneum]
Length = 472
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ + Y +F S+ F +YA+ L W + +K L++ H
Sbjct: 401 IKLWEIERNRLTYSEGVLYSQFLSQADFNILKEYAQSNGHLIWCNKEKRTLIINKSAHDD 460
Query: 61 IREFLRGQNK 70
+++F + +K
Sbjct: 461 VKKFWKRYSK 470
>gi|16198089|gb|AAL13841.1| LD30622p [Drosophila melanogaster]
Length = 350
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LWE + N+ T Y++F S F DYA+ L W++ + +VV+ H
Sbjct: 278 IKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDD 337
Query: 61 IREFLRGQNK 70
++ + + +K
Sbjct: 338 VKRYWKKYSK 347
>gi|299750117|ref|XP_001836551.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
gi|298408751|gb|EAU85259.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
Length = 403
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + Y F S+ +E YA++ + WE++ K E H +
Sbjct: 331 IRLWELEKNRLKSREGFLYTAFASQADYELVLQYAKELDVVLWENASKRCFFGSLEGHAN 390
Query: 61 IREFL 65
I+ F+
Sbjct: 391 IKGFI 395
>gi|336466164|gb|EGO54329.1| hypothetical protein NEUTE1DRAFT_87562 [Neurospora tetrasperma FGSC
2508]
gi|350286986|gb|EGZ68233.1| transcription factor Tfb2 [Neurospora tetrasperma FGSC 2509]
Length = 475
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + + + T + +F S + + A YA + L W++ K R + A H
Sbjct: 406 IRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHEQ 463
Query: 61 IREFLRGQNK 70
+R++L+ + K
Sbjct: 464 LRDYLKSRKK 473
>gi|336270172|ref|XP_003349845.1| hypothetical protein SMAC_00733 [Sordaria macrospora k-hell]
gi|380095234|emb|CCC06707.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 496
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + + + T + +F S + + A YA + L W++ K R + A H
Sbjct: 427 IRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHEQ 484
Query: 61 IREFLRGQNK 70
+R++L+ + K
Sbjct: 485 LRDYLKSRKK 494
>gi|164425579|ref|XP_960485.2| hypothetical protein NCU05523 [Neurospora crassa OR74A]
gi|157070982|gb|EAA31249.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 475
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + + + T + +F S + + A YA + L W++ K R + A H
Sbjct: 406 IRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHEQ 463
Query: 61 IREFLRGQNK 70
+R++L+ + K
Sbjct: 464 LRDYLKSRKK 473
>gi|170120252|ref|XP_001891159.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164633568|gb|EDQ98188.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 475
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + N+ + + Y F S+ ++ +YA++ + WE+ K + H +
Sbjct: 404 IRLWELEKNRLKSQEGYLYTSFASQADYDFVLNYAKELGVVLWENPVKRCFFGSLDGHAN 463
Query: 61 IREFL 65
IR F+
Sbjct: 464 IRGFI 468
>gi|115388809|ref|XP_001211910.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195994|gb|EAU37694.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 460
Score = 34.7 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + ++ + T + +F S +E C YA + L W+ ++K V H
Sbjct: 394 IRLWQLERDRVKATAGFLFKDFASLAEYEDPCRYAEEIGVLVWKSNRKRMFFVTR--HEQ 451
Query: 61 IREFLRGQ 68
+ FLR +
Sbjct: 452 VAAFLRSR 459
>gi|261187837|ref|XP_002620336.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239593453|gb|EEQ76034.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239608433|gb|EEQ85420.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis ER-3]
gi|327356043|gb|EGE84900.1| RNA pol II transcription initiation subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 485
Score = 34.7 bits (78), Expect = 7.8, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + ++ + T + +F S FE C YA + L W+ K+ V H
Sbjct: 416 IRLWQLERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLLWKSEKRRMFFVTR--HEQ 473
Query: 61 IREFLRGQ 68
+ +LR +
Sbjct: 474 VAAYLRSR 481
>gi|365986883|ref|XP_003670273.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
gi|343769043|emb|CCD25030.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
Length = 522
Score = 34.7 bits (78), Expect = 8.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ +L++ Y +F + + YA+D L W+D KK + V E +
Sbjct: 448 IRLWQLELDRVIAYEGSLYSDFENNTEYTTLYKYAQDIGVLLWKDDKKRKFFVSKEGNSQ 507
Query: 61 IREFLRGQNK 70
+ ++ + + K
Sbjct: 508 VLDYAKRKLK 517
>gi|195999048|ref|XP_002109392.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
gi|190587516|gb|EDV27558.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
Length = 452
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 3 LWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIHIR 62
LWE + + + Y++ S FEA YA D L W K LVV + H H++
Sbjct: 383 LWELERGRLSCSDGVLYNQILSSSDFEALRKYADDMGVLLWASPAKRLLVVNRDGHNHVK 442
Query: 63 EFLR 66
F +
Sbjct: 443 HFWK 446
>gi|325089533|gb|EGC42843.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H88]
Length = 485
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + ++ + T + +F S FE C YA + L W+ +K V H
Sbjct: 416 IRLWQLERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQ 473
Query: 61 IREFLRGQ 68
+ +LR +
Sbjct: 474 VATYLRSK 481
>gi|240279262|gb|EER42767.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H143]
Length = 485
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ + ++ + T + +F S FE C YA + L W+ +K V H
Sbjct: 416 IRLWQLERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQ 473
Query: 61 IREFLRGQ 68
+ +LR +
Sbjct: 474 VAAYLRSK 481
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,120,287,645
Number of Sequences: 23463169
Number of extensions: 35016588
Number of successful extensions: 62564
Number of sequences better than 100.0: 223
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 62370
Number of HSP's gapped (non-prelim): 223
length of query: 70
length of database: 8,064,228,071
effective HSP length: 42
effective length of query: 28
effective length of database: 7,078,774,973
effective search space: 198205699244
effective search space used: 198205699244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)