BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046686
         (70 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
          C-Terminal Domain Of Tfb2
          Length = 80

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 1  IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
          IRLW+ +L++        Y +F +   +     YA+D   L W+D KK +  +  E +  
Sbjct: 8  IRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQ 67

Query: 61 IREFLR 66
          + +F +
Sbjct: 68 VLDFAK 73


>pdb|1ZSW|A Chain A, Crystal Structure Of Bacillus Cereus Metallo Protein From
           Glyoxalase Family
          Length = 338

 Score = 25.8 bits (55), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 16  VHYYDE-FPSRDVFEAACDYARDRSGLQWEDSKKMRLVV 53
           +HY+ E F   DV  +      +R  LQ+ED++ +RLV+
Sbjct: 115 LHYWKERFEKFDVKHSEMTTYANRPALQFEDAEGLRLVL 153


>pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
           C-Terminal Domain Of Tfb2
 pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
           C-Terminal Domain Of Tfb2
          Length = 108

 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 1   IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
           IRLW+ +L++        Y +F +   +     YA+D   L W+D KK +  +  E +  
Sbjct: 36  IRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQ 95

Query: 61  IREFLR 66
           + +F +
Sbjct: 96  VLDFAK 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,289,909
Number of Sequences: 62578
Number of extensions: 70809
Number of successful extensions: 101
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 3
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)