BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046686
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I LWE++ N+ T+ Y+ FP+ D + A +A+++ W LVVK E +
Sbjct: 414 ILLWEAERNRITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKTLVVKEEGNDP 473
Query: 61 IREFLR 66
IR F++
Sbjct: 474 IRNFIK 479
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LW+ +L++ Y +F + F C YA+D L W+D +K +L V E +
Sbjct: 431 IKLWQLELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSREGNAQ 490
Query: 61 IREFLRGQNK 70
+ E+ + + K
Sbjct: 491 VLEYAKRKIK 500
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLW+ +L++ + Y +F S ++ DYA+D L W++ KK V E +
Sbjct: 426 IRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQ 485
Query: 61 IREFLR 66
+ +F R
Sbjct: 486 VLDFHR 491
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 392 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 451
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 452 VKRFWKRQ 459
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 391 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 450
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 451 VKRFWKRQ 458
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
IRLWE + ++ T Y++F S+ FE +AR+ L +E+S K +VV H
Sbjct: 391 IRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSD 450
Query: 61 IREFLRGQ 68
++ F + Q
Sbjct: 451 VKRFWKRQ 458
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAE 56
I+LW+ +L++ + + + +F S+ FEA +YA + L W + KM+ V +
Sbjct: 445 IKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLLWSNKSKMKFFVTKD 500
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIH 60
I+LW+ ++++ T + + EF + D ++ YA++ L +E+ K + V
Sbjct: 391 IKLWQLEMDRIRATDGYLFSEFKNFDEYKDVSTYAKELGVLLYENPGKRKFVSTLAGSQQ 450
Query: 61 IREFLRGQNK 70
I EF++ +N+
Sbjct: 451 IVEFVKRRNQ 460
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAE---- 56
I+LW+ +L++ + + +F + ++ YARD L W D KK V E
Sbjct: 443 IKLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLLWSDDKKKMFFVSKEGNAQ 502
Query: 57 -IHIHIREF 64
I H R+F
Sbjct: 503 VIDFHKRKF 511
>sp|B4MYI5|BOP1_DROWI Ribosome biogenesis protein BOP1 homolog OS=Drosophila willistoni
GN=GK22227 PE=3 SV=1
Length = 778
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 3 LWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIH 58
LWE+D +++M R+H P RD+ A Y L E K L +K E H
Sbjct: 308 LWETDTGREQMRRIHDPVSAPKRDLPGHAESYNPPPEYLFDEKETKQWLKLKDEPH 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,765,925
Number of Sequences: 539616
Number of extensions: 841846
Number of successful extensions: 1534
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1520
Number of HSP's gapped (non-prelim): 14
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)