Query 046686
Match_columns 70
No_of_seqs 103 out of 155
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dgp_A RNA polymerase II trans 100.0 7.9E-41 2.7E-45 205.7 7.6 70 1-70 8-77 (80)
2 3dom_A RNA polymerase II trans 100.0 1.1E-38 3.9E-43 205.2 5.9 70 1-70 36-105 (108)
3 1yht_A DSPB; beta barrel, hydr 70.8 2.3 7.7E-05 30.7 2.2 22 21-42 90-111 (367)
4 3rcn_A Beta-N-acetylhexosamini 68.0 4.1 0.00014 31.2 3.2 25 18-42 216-240 (543)
5 2yl5_A Beta-N-acetylhexosamini 67.5 3.4 0.00011 30.6 2.6 24 19-42 88-111 (442)
6 2yl6_A Beta-N-acetylhexosamini 64.5 3.3 0.00011 30.5 2.1 24 19-42 85-108 (434)
7 2gjx_A Beta-hexosaminidase alp 62.1 5.3 0.00018 30.1 2.8 23 20-42 209-231 (507)
8 1jak_A Beta-N-acetylhexosamini 60.0 6.6 0.00023 29.7 3.0 23 20-42 225-247 (512)
9 3gh5_A HEX1, beta-hexosaminida 59.9 6 0.00021 30.3 2.8 24 19-42 249-272 (525)
10 1now_A Beta-hexosaminidase bet 59.8 6.9 0.00024 29.6 3.1 23 20-42 214-236 (507)
11 1c7s_A Beta-N-acetylhexosamini 52.9 9.7 0.00033 30.9 3.0 24 19-42 393-416 (858)
12 3ozo_A N-acetylglucosaminidase 52.9 10 0.00035 29.3 3.1 23 20-42 250-272 (572)
13 1vjq_A Designed protein; struc 51.0 27 0.00094 19.1 4.0 46 23-68 9-60 (79)
14 2epl_X N-acetyl-beta-D-glucosa 49.5 11 0.00038 29.3 2.8 23 20-42 139-161 (627)
15 3d37_A Tail protein, 43 kDa; s 48.0 20 0.00069 25.4 3.8 33 23-55 147-179 (381)
16 3cdd_A Prophage MUSO2, 43 kDa 46.4 20 0.0007 24.9 3.6 33 23-55 151-183 (361)
17 2ba3_A NIKA; dimer, bacterial 45.7 15 0.00052 18.8 2.2 18 23-40 22-39 (51)
18 2gjf_A Designed protein; proca 42.5 41 0.0014 18.4 5.1 52 17-68 10-68 (78)
19 4hku_A LMO2814 protein, TETR t 41.3 14 0.00047 22.3 1.8 24 11-34 37-61 (178)
20 1wru_A 43 kDa tail protein; ba 39.9 22 0.00076 25.1 3.0 33 23-55 145-177 (379)
21 3itq_A Prolyl 4-hydroxylase, a 36.6 33 0.0011 22.9 3.3 22 16-37 41-62 (216)
22 3on2_A Probable transcriptiona 36.3 21 0.00074 20.9 2.1 24 11-34 42-66 (199)
23 1ng7_A Poliovirus 3A-N, genome 36.2 13 0.00046 21.0 1.1 14 29-42 32-45 (60)
24 2fd5_A Transcriptional regulat 35.7 16 0.00055 21.6 1.4 26 11-36 37-63 (180)
25 3fil_A Immunoglobulin G-bindin 34.2 49 0.0017 18.4 3.2 25 30-54 29-55 (56)
26 2nx4_A Transcriptional regulat 34.0 9.9 0.00034 23.1 0.3 25 11-35 40-65 (194)
27 3ccy_A Putative TETR-family tr 33.7 21 0.00071 21.6 1.8 23 12-34 45-68 (203)
28 3rri_A Glyoxalase/bleomycin re 33.7 54 0.0018 18.3 3.5 22 21-42 74-95 (135)
29 3cdl_A Transcriptional regulat 33.4 13 0.00045 22.7 0.8 27 11-37 39-66 (203)
30 1xqa_A Glyoxalase/bleomycin re 33.0 45 0.0016 18.0 3.0 37 21-58 67-107 (113)
31 3r4q_A Lactoylglutathione lyas 32.8 37 0.0013 20.2 2.8 38 21-58 83-125 (160)
32 1mhx_A Immunoglobulin-binding 32.2 69 0.0024 18.1 3.7 25 30-54 38-64 (65)
33 3bzy_B ESCU; auto cleavage pro 31.8 22 0.00075 20.8 1.6 19 28-46 29-47 (83)
34 3nrg_A TETR family transcripti 31.3 24 0.00083 21.2 1.8 26 11-36 43-69 (217)
35 2eh3_A Transcriptional regulat 31.2 12 0.0004 22.3 0.3 27 11-37 32-59 (179)
36 2xdn_A HTH-type transcriptiona 31.1 14 0.00048 22.5 0.6 25 12-36 42-67 (210)
37 1rkt_A Protein YFIR; transcrip 31.0 16 0.00055 22.2 0.9 24 12-35 43-67 (205)
38 2jug_A TUBC protein; docking d 30.8 72 0.0024 17.6 4.0 24 30-53 9-32 (78)
39 2w53_A Repressor, SMet; antibi 30.6 16 0.00054 22.4 0.8 24 12-35 42-66 (219)
40 2whl_A Beta-mannanase, baman5; 30.2 50 0.0017 21.9 3.3 23 23-45 61-83 (294)
41 3g8r_A Probable spore coat pol 29.9 21 0.00072 26.0 1.5 24 23-46 75-98 (350)
42 2gfn_A HTH-type transcriptiona 29.9 12 0.00042 23.1 0.2 25 12-36 40-65 (209)
43 2hyj_A Putative TETR-family tr 29.6 17 0.0006 22.1 0.9 25 11-35 42-67 (200)
44 3lws_A Aromatic amino acid bet 29.1 53 0.0018 21.6 3.3 24 24-47 154-177 (357)
45 2gen_A Probable transcriptiona 29.0 14 0.00047 22.5 0.3 25 11-35 37-62 (197)
46 3kkd_A Transcriptional regulat 29.0 25 0.00087 21.8 1.6 26 11-36 65-91 (237)
47 3bul_A Methionine synthase; tr 28.8 41 0.0014 26.0 3.0 57 10-68 484-559 (579)
48 2np5_A Transcriptional regulat 28.8 14 0.00047 22.6 0.3 26 11-36 39-65 (203)
49 3crj_A Transcription regulator 28.7 18 0.00061 22.1 0.8 25 12-36 45-70 (199)
50 4adb_A Succinylornithine trans 28.3 69 0.0024 21.4 3.8 25 24-48 202-226 (406)
51 3rd3_A Probable transcriptiona 27.7 21 0.00073 21.0 1.0 23 12-34 41-64 (197)
52 2oer_A Probable transcriptiona 27.6 15 0.0005 22.7 0.3 25 11-35 54-79 (214)
53 2hyt_A TETR-family transcripti 27.5 12 0.00042 22.7 -0.1 24 12-35 43-67 (197)
54 2bkf_A Zinc-finger protein NBR 27.5 53 0.0018 19.7 2.8 21 22-42 60-80 (87)
55 3eup_A Transcriptional regulat 26.9 16 0.00054 21.7 0.3 25 11-35 41-66 (204)
56 2vt1_B Surface presentation of 26.8 30 0.001 20.8 1.6 19 28-46 29-47 (93)
57 3loc_A HTH-type transcriptiona 26.5 15 0.00052 21.9 0.2 24 12-35 49-73 (212)
58 4gqr_A Pancreatic alpha-amylas 26.4 55 0.0019 22.7 3.1 24 20-43 71-94 (496)
59 3ewt_E Tumor necrosis factor r 25.8 30 0.001 16.3 1.1 12 57-68 12-23 (25)
60 3qqa_A CMER; alpha-helical, he 25.7 29 0.00099 20.8 1.4 25 11-35 49-74 (216)
61 3he0_A Transcriptional regulat 25.7 22 0.00076 21.0 0.8 25 12-36 42-67 (196)
62 3bhq_A Transcriptional regulat 25.3 12 0.00042 22.9 -0.4 24 12-35 43-67 (211)
63 3him_A Probable transcriptiona 25.2 28 0.00096 20.6 1.3 24 11-34 46-70 (211)
64 1ui5_A A-factor receptor homol 25.0 18 0.0006 22.5 0.3 24 12-35 40-64 (215)
65 3b81_A Transcriptional regulat 25.0 24 0.00081 21.0 0.9 24 11-34 41-65 (203)
66 2wui_A MEXZ, transcriptional r 24.9 16 0.00053 22.4 0.0 28 11-38 41-69 (210)
67 3anp_C Transcriptional repress 24.6 15 0.00052 22.2 -0.1 24 12-35 40-64 (204)
68 3dgv_A TAFI, carboxypeptidase 24.5 2E+02 0.0069 20.8 6.4 46 23-68 12-65 (401)
69 2jig_A Prolyl-4 hydroxylase; h 24.1 70 0.0024 20.7 3.2 22 16-37 22-43 (224)
70 3c01_E Surface presentation of 24.1 32 0.0011 20.8 1.3 19 28-46 29-47 (98)
71 3vib_A MTRR; helix-turn-helix 24.1 18 0.00063 22.0 0.2 24 12-35 41-65 (210)
72 2atm_A Hyaluronoglucosaminidas 23.9 50 0.0017 24.1 2.6 44 21-67 271-317 (331)
73 2id6_A Transcriptional regulat 23.9 15 0.00052 22.3 -0.2 24 12-35 36-60 (202)
74 2ybf_B E3 ubiquitin-protein li 23.6 59 0.002 15.6 2.0 13 25-37 8-20 (27)
75 3qbm_A TETR transcriptional re 23.3 27 0.00092 20.6 0.9 24 11-34 37-61 (199)
76 1wj6_A KIAA0049 protein, RSGI 23.0 67 0.0023 19.8 2.7 22 21-42 67-88 (101)
77 2v57_A TETR family transcripti 23.0 20 0.0007 21.2 0.3 25 12-36 43-68 (190)
78 3qkx_A Uncharacterized HTH-typ 22.9 20 0.00068 20.9 0.2 26 11-36 38-64 (188)
79 3dzz_A Putative pyridoxal 5'-p 22.6 1E+02 0.0036 20.2 3.8 27 24-50 178-204 (391)
80 1zk8_A Transcriptional regulat 22.4 29 0.001 20.4 0.9 24 11-34 38-62 (183)
81 2np3_A Putative TETR-family re 22.2 32 0.0011 20.8 1.1 27 10-36 59-86 (212)
82 3nx3_A Acoat, acetylornithine 22.0 91 0.0031 20.9 3.5 26 23-48 197-222 (395)
83 3pas_A TETR family transcripti 21.7 22 0.00075 20.8 0.2 24 12-35 39-63 (195)
84 2a4x_A Mitomycin-binding prote 21.7 1E+02 0.0035 17.3 3.3 41 18-58 75-121 (138)
85 3a24_A Alpha-galactosidase; gl 21.6 56 0.0019 25.7 2.6 23 26-48 347-371 (641)
86 3geu_A Intercellular adhesion 21.5 25 0.00086 20.8 0.5 24 11-34 33-57 (189)
87 3lsj_A DEST; transcriptional r 21.5 40 0.0014 20.4 1.5 24 12-35 43-67 (220)
88 3egq_A TETR family transcripti 21.5 22 0.00076 20.7 0.2 24 12-35 35-59 (170)
89 2ibd_A Possible transcriptiona 21.4 23 0.00078 21.5 0.3 23 12-34 45-68 (204)
90 2i10_A Putative TETR transcrip 21.4 14 0.00049 22.6 -0.7 24 12-35 42-66 (202)
91 2cho_A Glucosaminidase, hexosa 21.4 55 0.0019 25.8 2.5 21 24-44 184-205 (716)
92 3col_A Putative transcription 21.4 30 0.001 20.2 0.8 25 12-36 41-66 (196)
93 1usm_A DCOH, hepatocyte nuclea 21.3 41 0.0014 19.1 1.4 54 4-58 3-58 (80)
94 2hxo_A Putative TETR-family tr 21.3 37 0.0013 21.8 1.3 27 10-36 45-72 (237)
95 3nxc_A HTH-type protein SLMA; 21.2 31 0.001 20.6 0.8 23 12-34 56-79 (212)
96 3jsj_A Putative TETR-family tr 21.1 24 0.00082 20.9 0.3 24 12-35 39-63 (190)
97 2q24_A Putative TETR family tr 21.1 24 0.00082 21.1 0.3 25 11-35 44-69 (194)
98 2z3x_A SAsp, small, acid-solub 21.1 19 0.00065 20.5 -0.1 15 32-46 17-31 (63)
99 2qv6_A MJ0145, GTP cyclohydrol 21.0 61 0.0021 22.8 2.5 30 26-55 161-190 (268)
100 3f0c_A TETR-molecule A, transc 21.0 24 0.00081 21.3 0.3 24 12-35 42-66 (216)
101 3dpj_A Transcription regulator 20.8 24 0.00082 20.9 0.3 24 12-35 39-63 (194)
102 3tp4_A Computational design of 20.5 51 0.0018 25.1 2.1 41 27-67 299-346 (475)
103 2rk0_A Glyoxalase/bleomycin re 20.3 68 0.0023 18.0 2.3 23 21-43 79-101 (136)
104 4a6r_A Omega transaminase; tra 20.3 82 0.0028 22.0 3.1 27 22-48 236-262 (459)
105 1v72_A Aldolase; PLP-dependent 20.2 1E+02 0.0034 20.0 3.3 26 23-48 157-182 (356)
106 2cjg_A L-lysine-epsilon aminot 20.1 1.1E+02 0.0038 21.4 3.7 28 22-49 248-275 (449)
No 1
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-41 Score=205.69 Aligned_cols=70 Identities=26% Similarity=0.516 Sum_probs=61.7
Q ss_pred CcccccccCceeeeceEEecCCCCHHHHHHHHHHHHHcCeEEeeeCCcceEEEeccccHHHHHHHHhhcC
Q 046686 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIHIREFLRGQNK 70 (70)
Q Consensus 1 IrLWe~ErnRi~~~~g~Ly~~F~s~~~fe~~~~yA~~~gvLlW~~~~kr~~~V~~~gh~~vr~f~k~~~~ 70 (70)
|||||+|||||++++||||++|+|+++|+++++||+++|||||+|+.+|+|||+++||++|++|||++++
T Consensus 8 IrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 8 IRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred HHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999874
No 2
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=205.17 Aligned_cols=70 Identities=26% Similarity=0.516 Sum_probs=68.2
Q ss_pred CcccccccCceeeeceEEecCCCCHHHHHHHHHHHHHcCeEEeeeCCcceEEEeccccHHHHHHHHhhcC
Q 046686 1 IRLWESDLNKDEMTRVHYYDEFPSRDVFEAACDYARDRSGLQWEDSKKMRLVVKAEIHIHIREFLRGQNK 70 (70)
Q Consensus 1 IrLWe~ErnRi~~~~g~Ly~~F~s~~~fe~~~~yA~~~gvLlW~~~~kr~~~V~~~gh~~vr~f~k~~~~ 70 (70)
|||||+|||||++++||||++|+|+++|+++++||+++|||||+|+.+|+|||+.+||++|++|||++++
T Consensus 36 IrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~vk~f~Kr~~~ 105 (108)
T 3dom_A 36 IRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 105 (108)
T ss_dssp HHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHHHHHHHHHC-
T ss_pred HHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999874
No 3
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=70.77 E-value=2.3 Score=30.73 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHcCeEE
Q 046686 21 EFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 21 ~F~s~~~fe~~~~yA~~~gvLl 42 (70)
.|-|++|+..+++||++.||-|
T Consensus 90 g~YT~~di~eiv~YA~~rgI~V 111 (367)
T 1yht_A 90 PFLSYRQLDDIKAYAKAKGIEL 111 (367)
T ss_dssp EEBCHHHHHHHHHHHHHTTCEE
T ss_pred CCcCHHHHHHHHHHHHHcCCEE
Confidence 5789999999999999999955
No 4
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=67.96 E-value=4.1 Score=31.18 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.2
Q ss_pred EecCCCCHHHHHHHHHHHHHcCeEE
Q 046686 18 YYDEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 18 Ly~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
-+..|-|++|+..+++||++.||-+
T Consensus 216 ~~~g~YT~~di~eIv~YA~~rgI~V 240 (543)
T 3rcn_A 216 PHGGFYTQDDLREIVAFAADRHITV 240 (543)
T ss_dssp CEECCBCHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCcCHHHHHHHHHHHHHcCCEE
Confidence 3578999999999999999999854
No 5
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=67.54 E-value=3.4 Score=30.60 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=21.3
Q ss_pred ecCCCCHHHHHHHHHHHHHcCeEE
Q 046686 19 YDEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 19 y~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
+..|-|++|+..+++||++.||-|
T Consensus 88 ~~~~YT~~di~eIv~YA~~rgI~V 111 (442)
T 2yl5_A 88 NGTALTQAEVTELIEYAKSKDIGL 111 (442)
T ss_dssp TCSCBCHHHHHHHHHHHHTTTCEE
T ss_pred CCCCcCHHHHHHHHHHHHHcCCee
Confidence 357899999999999999999954
No 6
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=64.54 E-value=3.3 Score=30.51 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=21.3
Q ss_pred ecCCCCHHHHHHHHHHHHHcCeEE
Q 046686 19 YDEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 19 y~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
+..|-|++|+..+++||++.||-|
T Consensus 85 ~~~~YT~~di~eIv~YA~~rgI~V 108 (434)
T 2yl6_A 85 NGNHLTESQMTDLINYAKDKGIGL 108 (434)
T ss_dssp TCSCEEHHHHHHHHHHHHHTTCEE
T ss_pred CCCccCHHHHHHHHHHHHHcCCEE
Confidence 357889999999999999999954
No 7
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=62.12 E-value=5.3 Score=30.15 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCeEE
Q 046686 20 DEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 20 ~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
..|-|++|+..+++||++.||-+
T Consensus 209 ~~~YT~~di~eiv~yA~~rgI~V 231 (507)
T 2gjx_A 209 THIYTAQDVKEVIEYARLRGIRV 231 (507)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCEE
Confidence 57789999999999999999844
No 8
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=59.99 E-value=6.6 Score=29.69 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=20.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCeEE
Q 046686 20 DEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 20 ~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
..|-|++|+..+++||++.||-+
T Consensus 225 ~g~YT~~di~eiv~yA~~rgI~V 247 (512)
T 1jak_A 225 GGYYTKAEYKEIVRYAASRHLEV 247 (512)
T ss_dssp CCCBCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCEE
Confidence 47889999999999999999954
No 9
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=59.93 E-value=6 Score=30.25 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.4
Q ss_pred ecCCCCHHHHHHHHHHHHHcCeEE
Q 046686 19 YDEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 19 y~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
+..|-|++|+..+++||++.||-+
T Consensus 249 ~~g~YT~~di~eIv~YA~~rgI~V 272 (525)
T 3gh5_A 249 PGGYYTQEQFKDIVSYAAERYIEV 272 (525)
T ss_dssp CCCCBCHHHHHHHHHHHHTTTCEE
T ss_pred CCCCcCHHHHHHHHHHHHHcCCEE
Confidence 467889999999999999999854
No 10
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=59.77 E-value=6.9 Score=29.55 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCeEE
Q 046686 20 DEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 20 ~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
..|-|++|+..+++||++.||-+
T Consensus 214 ~~~YT~~di~eiv~yA~~rgI~V 236 (507)
T 1now_A 214 SHVYTPNDVRMVIEYARLRGIRV 236 (507)
T ss_dssp TSCBCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCEE
Confidence 57789999999999999999944
No 11
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=52.87 E-value=9.7 Score=30.95 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.5
Q ss_pred ecCCCCHHHHHHHHHHHHHcCeEE
Q 046686 19 YDEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 19 y~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
+..|-|++|+..+++||++.||-+
T Consensus 393 ~~g~YT~~direIv~YA~~rgI~V 416 (858)
T 1c7s_A 393 YGGFFSRQDYIDIIKYAQARQIEV 416 (858)
T ss_dssp EECCBCHHHHHHHHHHHHTTTCEE
T ss_pred cCCCCCHHHHHHHHHHHHHcCCEE
Confidence 567899999999999999999944
No 12
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=52.87 E-value=10 Score=29.29 Aligned_cols=23 Identities=4% Similarity=0.125 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCeEE
Q 046686 20 DEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 20 ~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
..|-|++|+..+++||++.||-+
T Consensus 250 ~~~YT~~di~eiv~yA~~rgI~V 272 (572)
T 3ozo_A 250 QKVYTKAAIREVVRFGLERGVRV 272 (572)
T ss_dssp SSCBCHHHHHHHHHHHHHTTCEE
T ss_pred CCCcCHHHHHHHHHHHHHhCCce
Confidence 46889999999999999999854
No 13
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=51.02 E-value=27 Score=19.13 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHcCeEE-eeeCC-----cceEEEeccccHHHHHHHHhh
Q 046686 23 PSRDVFEAACDYARDRSGLQ-WEDSK-----KMRLVVKAEIHIHIREFLRGQ 68 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLl-W~~~~-----kr~~~V~~~gh~~vr~f~k~~ 68 (70)
.|.+.-+.+.+.++..++-. |..+. .--+.|+++.-..+.+++++.
T Consensus 9 ~~~~q~~~L~~L~~~~~~df~W~~~~~~~~~~~di~V~p~~~~~f~~~L~~~ 60 (79)
T 1vjq_A 9 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 60 (79)
T ss_dssp CSHHHHHHHHHHHTSCCTTCEESSCCCSTTCCEEEEECGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCceEEEcCCCCCCCCCcEEEEECHHHHHHHHHHHHHC
Confidence 45667788888877778889 98764 235789998888899998864
No 14
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A
Probab=49.47 E-value=11 Score=29.31 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCeEE
Q 046686 20 DEFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 20 ~~F~s~~~fe~~~~yA~~~gvLl 42 (70)
..|-|++|+..+++||++.||-+
T Consensus 139 ~~~YT~~di~eiv~yA~~rgI~V 161 (627)
T 2epl_X 139 RGRYTVAELQEIEDYAADFDMSF 161 (627)
T ss_dssp TTCBCHHHHHHHHHHHHHTTCEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCEE
Confidence 46789999999999999999954
No 15
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=47.98 E-value=20 Score=25.43 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCeEEeeeCCcceEEEec
Q 046686 23 PSRDVFEAACDYARDRSGLQWEDSKKMRLVVKA 55 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLlW~~~~kr~~~V~~ 55 (70)
.+..|++-+...|++.|+++|-+...+.+|..+
T Consensus 147 ~~ESd~~fL~rlA~~~g~~~~v~~~G~L~f~~~ 179 (381)
T 3d37_A 147 PGETVWQALTHIANSVGLHPWLEPDGTLVVGGA 179 (381)
T ss_dssp TTCBHHHHHHHHHHHTTCEEEECTTSCEEEECC
T ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCeEEEeCC
Confidence 378899999999999999999776666666654
No 16
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=46.43 E-value=20 Score=24.95 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCeEEeeeCCcceEEEec
Q 046686 23 PSRDVFEAACDYARDRSGLQWEDSKKMRLVVKA 55 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLlW~~~~kr~~~V~~ 55 (70)
.+..|++-+...|++.|++++-++..+.+|..+
T Consensus 151 ~~eSd~~fL~rlA~~~g~~~~v~~~G~L~f~~~ 183 (361)
T 3cdd_A 151 QGETPHELLARLAKQRGVLLTSDTFGNLVITRA 183 (361)
T ss_dssp TTCCHHHHHHHHHHTTTCEEEECTTCCEEEECS
T ss_pred CCCCHHHHHHHHHHhCCcEEEECCCCeEEEeCC
Confidence 378999999999999999999876666666654
No 17
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=45.71 E-value=15 Score=18.82 Aligned_cols=18 Identities=22% Similarity=-0.162 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHcCe
Q 046686 23 PSRDVFEAACDYARDRSG 40 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gv 40 (70)
.|.+|++.+..+|+..|.
T Consensus 22 lt~eE~~~l~~~A~~~g~ 39 (51)
T 2ba3_A 22 FSPVEDETIRKKAEDSGL 39 (51)
T ss_dssp ECHHHHHHHHHHHHHHTC
T ss_pred ECHHHHHHHHHHHHHhCC
Confidence 588999999999999885
No 18
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=42.52 E-value=41 Score=18.35 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=38.4
Q ss_pred EEecCC-CCHHHHHHHHHHHH--HcCeEEeeeCC----cceEEEeccccHHHHHHHHhh
Q 046686 17 HYYDEF-PSRDVFEAACDYAR--DRSGLQWEDSK----KMRLVVKAEIHIHIREFLRGQ 68 (70)
Q Consensus 17 ~Ly~~F-~s~~~fe~~~~yA~--~~gvLlW~~~~----kr~~~V~~~gh~~vr~f~k~~ 68 (70)
.+|+=. .|.+.-+.+.+.+. ..++-.|..+. .--+.|+++.-..+.+++++.
T Consensus 10 ~~~rV~~~~~~q~~~L~~L~~~~~~~ldfW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~ 68 (78)
T 2gjf_A 10 TIFVIVPTNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 68 (78)
T ss_dssp EEEEECCCSHHHHHHHHHHHTCTTTCCEESSCTTSTTCCEEEEECTTSHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhcCCCCEEeeCCCCCCCCeEEEEECHHHHHHHHHHHHHC
Confidence 345534 45667888888877 68899998763 235889998888899998864
No 19
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=41.35 E-value=14 Score=22.26 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=18.4
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
.-.+.|.+|.-|+|+++ |..+++.
T Consensus 37 aGvs~~tlY~~F~sKe~L~~a~~~~ 61 (178)
T 4hku_A 37 LNVTHAALYKHYRNKEDLFQKLALR 61 (178)
T ss_dssp TTSCGGGGGGTCSSHHHHHHHHHHH
T ss_pred hCcCHhHHHHHCCCHHHHHHHHHHH
Confidence 34678999999999877 6666554
No 20
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural Pro; 2.10A {Enterobacteria phage MU} SCOP: b.106.1.1 b.106.1.1
Probab=39.93 E-value=22 Score=25.08 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHcCeEEeeeCCcceEEEec
Q 046686 23 PSRDVFEAACDYARDRSGLQWEDSKKMRLVVKA 55 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLlW~~~~kr~~~V~~ 55 (70)
.+..||+-+...|++.|+++|-++..+.+|..+
T Consensus 145 ~~ESd~~fL~rlA~~~g~~~~v~~~G~L~f~~~ 177 (379)
T 1wru_A 145 HSETVYEALVRASRARGVLMTSNAAGELVFSRA 177 (379)
T ss_dssp TTCBHHHHHHHHHHTTTCEEEECGGGCEEEECC
T ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCeEEEeCC
Confidence 488999999999999999999775556666554
No 21
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=36.63 E-value=33 Score=22.91 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=20.1
Q ss_pred eEEecCCCCHHHHHHHHHHHHH
Q 046686 16 VHYYDEFPSRDVFEAACDYARD 37 (70)
Q Consensus 16 g~Ly~~F~s~~~fe~~~~yA~~ 37 (70)
-++|.+|.|.+|-+.+.+.|+.
T Consensus 41 i~~~~~fLs~~Ec~~Li~~a~~ 62 (216)
T 3itq_A 41 IVVLGNVLSDEECDELIELSKS 62 (216)
T ss_dssp EEEEESCSCHHHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHhhc
Confidence 4789999999999999999986
No 22
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=36.30 E-value=21 Score=20.95 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=14.1
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
.-.+.|.+|.-|+|.++ +..+.+.
T Consensus 42 agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (199)
T 3on2_A 42 AGVSHAAPSKHFRDRQALLDALAES 66 (199)
T ss_dssp TC-----CCCSSSSHHHHHHHHHHH
T ss_pred hCCChHHHHHHhCCHHHHHHHHHHH
Confidence 45678999999999777 6655554
No 23
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=36.21 E-value=13 Score=20.98 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCeEE
Q 046686 29 EAACDYARDRSGLQ 42 (70)
Q Consensus 29 e~~~~yA~~~gvLl 42 (70)
+.|++||++.|.++
T Consensus 32 ~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 32 QEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcee
Confidence 67899999999887
No 24
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=35.66 E-value=16 Score=21.59 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.2
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
.-.+.|.+|.-|+|.++ +..+.+..-
T Consensus 37 agvs~~tly~~F~sK~~L~~a~~~~~~ 63 (180)
T 2fd5_A 37 AGLTVGGFYAHFQSKDALMLEAFEQLL 63 (180)
T ss_dssp TTCCGGGGGGTCSCHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHCCCHHHHHHHHHHHHH
Confidence 44678999999999777 666665543
No 25
>3fil_A Immunoglobulin G-binding protein G; dimerization, beta sheet, alpha helix, improved hydrophobic packing of core residues, protein binding; HET: FME; 0.88A {Streptococcus SP} SCOP: d.15.7.1 PDB: 2qmt_A 2jsv_X 2ju6_X 2k0p_A 2kq4_X 2kwd_A 2lgi_A 2gi9_A 1gb1_A 1pga_A 1pgb_A 2gb1_A 3gb1_A 2klk_A 2rmm_A 2onq_A 2on8_A 2j52_A 2j53_A 3v3x_A* ...
Probab=34.24 E-value=49 Score=18.35 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=18.5
Q ss_pred HHHHHHHHcCe-EEeeeC-CcceEEEe
Q 046686 30 AACDYARDRSG-LQWEDS-KKMRLVVK 54 (70)
Q Consensus 30 ~~~~yA~~~gv-LlW~~~-~kr~~~V~ 54 (70)
..++||.++|+ ..|..+ +...|-|+
T Consensus 29 ~Fr~Yan~ngvdgeW~YD~ATkTFTvT 55 (56)
T 3fil_A 29 VFKQYANDLGVDGEWTYDDATKTFTVT 55 (56)
T ss_dssp HHHHHHHHTTCCCEEEEEGGGTEEEEE
T ss_pred HHHHHhhccCCccEEEecCceeEEEec
Confidence 45799999999 889754 45566654
No 26
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=33.97 E-value=9.9 Score=23.12 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=18.6
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
.-.+.|.||.-|+|.++ |..+.+..
T Consensus 40 aGvs~gtlY~yF~sKe~L~~a~~~~~ 65 (194)
T 2nx4_A 40 AGYTNGALSHYFAGKDEILRTSYEHI 65 (194)
T ss_dssp HTCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred hCCCcchHHHhCcCHHHHHHHHHHHH
Confidence 34678999999999777 66666543
No 27
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=33.74 E-value=21 Score=21.57 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=17.8
Q ss_pred eeeceEEecCCCCHHH-HHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
-.+.|.+|.-|+|.++ |..+.+.
T Consensus 45 gvs~~t~Y~yF~sKe~L~~~~~~~ 68 (203)
T 3ccy_A 45 ECSKSRLYHYFDSKEAVLRDMLTT 68 (203)
T ss_dssp TCCGGGGTTTCSCHHHHHHHHHHH
T ss_pred CCCcCeeeeeeCCHHHHHHHHHHH
Confidence 4678999999999877 6666554
No 28
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=33.72 E-value=54 Score=18.34 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHcCeEE
Q 046686 21 EFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 21 ~F~s~~~fe~~~~yA~~~gvLl 42 (70)
.+.+.++.+.+.+.+++.|+-+
T Consensus 74 ~~~~~~d~~~~~~~l~~~G~~~ 95 (135)
T 3rri_A 74 TFRDKKHFDNLYKLAKQRGIPF 95 (135)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCE
T ss_pred EEcChHhHHHHHHHHHHcCCce
Confidence 4667799999999999999954
No 29
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=33.43 E-value=13 Score=22.66 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=20.5
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYARD 37 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA~~ 37 (70)
.-.+.|.||.-|+|.++ |..+++..-+
T Consensus 39 aGvsk~tlY~~F~sKe~L~~a~~~~~~~ 66 (203)
T 3cdl_A 39 AEVSKRTVYNHFPSKEELFAEMLQRLWN 66 (203)
T ss_dssp TTSCHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34678899999999777 7777766544
No 30
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Probab=32.98 E-value=45 Score=18.03 Aligned_cols=37 Identities=11% Similarity=-0.091 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHcCeEEeeeCC----cceEEEecccc
Q 046686 21 EFPSRDVFEAACDYARDRSGLQWEDSK----KMRLVVKAEIH 58 (70)
Q Consensus 21 ~F~s~~~fe~~~~yA~~~gvLlW~~~~----kr~~~V~~~gh 58 (70)
.-+|.++.+.+.+.+++.|+-+.. +. +...|..++|+
T Consensus 67 ~v~~~~d~~~~~~~l~~~G~~~~~-p~~~~~~~~~~~DPdG~ 107 (113)
T 1xqa_A 67 PQESEEQVDKINQRLKEDGFLVEP-PKHAHAYTFYVEAPGGF 107 (113)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCCC-CEEC-CEEEEEEETTTE
T ss_pred EcCCHHHHHHHHHHHHHCCCEEec-CcCCCcEEEEEECCCCc
Confidence 456779999999999999987653 21 22344457775
No 31
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}
Probab=32.81 E-value=37 Score=20.18 Aligned_cols=38 Identities=0% Similarity=-0.266 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHcCeEEee-----eCCcceEEEecccc
Q 046686 21 EFPSRDVFEAACDYARDRSGLQWE-----DSKKMRLVVKAEIH 58 (70)
Q Consensus 21 ~F~s~~~fe~~~~yA~~~gvLlW~-----~~~kr~~~V~~~gh 58 (70)
...|.++.+.+.+.+++.|+-+-. ...+...|..++|+
T Consensus 83 ~V~~~~dld~~~~~l~~~G~~~~~~~~~~~g~~~~~~~DPdG~ 125 (160)
T 3r4q_A 83 YADDKAEVDEWKTRFEALEIPVEHYHRWPNGSYSVYIRDPAGN 125 (160)
T ss_dssp EESSHHHHHHHHHHHHTTTCCCCEEEECTTSCEEEEEECTTCC
T ss_pred EeCCHHHHHHHHHHHHHCCCEEeccccccCCcEEEEEECCCCC
Confidence 456789999999999999986522 22333444457765
No 32
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=32.20 E-value=69 Score=18.10 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHHHHcCe-EEeeeC-CcceEEEe
Q 046686 30 AACDYARDRSG-LQWEDS-KKMRLVVK 54 (70)
Q Consensus 30 ~~~~yA~~~gv-LlW~~~-~kr~~~V~ 54 (70)
..++||.+.|+ ..|+.+ +...|-|+
T Consensus 38 ~FrqYan~NgvdgeWsYD~ATkTFTvT 64 (65)
T 1mhx_A 38 VFKQYANDNGVDGEWTYDDAAKTFTVT 64 (65)
T ss_dssp HHHHHHHHTTCCSEEEEETTTTEEEEE
T ss_pred HHHHHhhccCCccEEEecCceeEEEec
Confidence 45799999999 889754 55666665
No 33
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=31.79 E-value=22 Score=20.79 Aligned_cols=19 Identities=16% Similarity=-0.221 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCeEEeeeC
Q 046686 28 FEAACDYARDRSGLQWEDS 46 (70)
Q Consensus 28 fe~~~~yA~~~gvLlW~~~ 46 (70)
=+.+++.|++.||.+.+|+
T Consensus 29 A~~I~~~A~e~~VPi~e~~ 47 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDI 47 (83)
T ss_dssp HHHHHHHHHHTTCCEEECH
T ss_pred HHHHHHHHHHcCCCEEeCH
Confidence 3578999999999999886
No 34
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=31.34 E-value=24 Score=21.17 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=19.2
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
.-.+.|.+|.-|+|.++ +..+.+..-
T Consensus 43 agvs~~tlY~~F~sK~~L~~~~~~~~~ 69 (217)
T 3nrg_A 43 AGIAKGSFYQYFADKKDCYLYLIQLGI 69 (217)
T ss_dssp HTCCTTGGGGTCSSHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34678999999999777 666665443
No 35
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=31.21 E-value=12 Score=22.32 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=19.9
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYARD 37 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA~~ 37 (70)
.-.+.|-+|.-|+|.++ |..+++..-+
T Consensus 32 agvskgtlY~~F~sKe~L~~~~~~~~~~ 59 (179)
T 2eh3_A 32 ANLSKGAFYFHFKSKEELITEIIERTHK 59 (179)
T ss_dssp HTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34678899999999877 7776665443
No 36
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=31.07 E-value=14 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=19.3
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
-.+.|.+|.-|+|.++ |..+++..-
T Consensus 42 GvskgtlY~~F~sKe~L~~~~~~~~~ 67 (210)
T 2xdn_A 42 GVTRGAIYWHFNNKAELVQALLDSLA 67 (210)
T ss_dssp TCCTTHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578999999999877 777766543
No 37
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=31.00 E-value=16 Score=22.22 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=18.1
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ |..+++..
T Consensus 43 gvs~gtlY~yF~sKe~L~~~v~~~~ 67 (205)
T 1rkt_A 43 GFSRGGVYLYFSSTEEMFRRIIETG 67 (205)
T ss_dssp TSCHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCcchhhhhCCCHHHHHHHHHHHH
Confidence 4577899999999777 66666544
No 38
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=30.82 E-value=72 Score=17.64 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=18.6
Q ss_pred HHHHHHHHcCeEEeeeCCcceEEE
Q 046686 30 AACDYARDRSGLQWEDSKKMRLVV 53 (70)
Q Consensus 30 ~~~~yA~~~gvLlW~~~~kr~~~V 53 (70)
.+....++.||-+|.+..+-.+-.
T Consensus 9 ~ll~~l~~~gi~l~~eg~kLr~~a 32 (78)
T 2jug_A 9 ALLAHAASLGVRLWVEGERLRFQA 32 (78)
T ss_dssp HHHHHHHHHTCEEEEETTEEEEEC
T ss_pred HHHHHHHHcCCEEEEECCEeeeec
Confidence 456788999999999888755443
No 39
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=30.62 E-value=16 Score=22.40 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=18.5
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ |..+++..
T Consensus 42 GvskgtlY~~F~sKe~L~~av~~~~ 66 (219)
T 2w53_A 42 GYTRGAVYWHFKNKSEVLAAIVERV 66 (219)
T ss_dssp TSCHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCchHHhhcCCCHHHHHHHHHHHH
Confidence 4578899999999777 66666654
No 40
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=30.17 E-value=50 Score=21.92 Aligned_cols=23 Identities=9% Similarity=0.084 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHcCeEEeee
Q 046686 23 PSRDVFEAACDYARDRSGLQWED 45 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLlW~~ 45 (70)
...+..+.++++|++.|+.++-+
T Consensus 61 ~~~~~ld~~v~~a~~~Gi~Vild 83 (294)
T 2whl_A 61 DDIDTIREVIELAEQNKMVAVVE 83 (294)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHCCCEEEEE
Confidence 35778899999999999987644
No 41
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=29.90 E-value=21 Score=26.03 Aligned_cols=24 Identities=0% Similarity=-0.172 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHcCeEEeeeC
Q 046686 23 PSRDVFEAACDYARDRSGLQWEDS 46 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLlW~~~ 46 (70)
.+.+.+..+.+||++.|+...+.+
T Consensus 75 l~~e~~~~L~~~~~~~Gi~~~st~ 98 (350)
T 3g8r_A 75 LQPEQMQKLVAEMKANGFKAICTP 98 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEecc
Confidence 788999999999999999876543
No 42
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.89 E-value=12 Score=23.10 Aligned_cols=25 Identities=24% Similarity=0.044 Sum_probs=18.6
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
-.+.|.||.-|+|.++ |..+.+..-
T Consensus 40 Gvs~gtlY~yF~sKe~L~~a~~~~~~ 65 (209)
T 2gfn_A 40 GWSTGVLNHYFGSRHELLLAALRRAG 65 (209)
T ss_dssp SSCHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred CCCcchHHhcCCCHHHHHHHHHHHHH
Confidence 4578899999999777 666665443
No 43
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.55 E-value=17 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=18.6
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
.-.+.|.||.-|+|.++ |..+++..
T Consensus 42 aGvsk~tlY~hF~sKe~L~~a~~~~~ 67 (200)
T 2hyj_A 42 LEMSKSGVHKHFGTKETLQISTLDKA 67 (200)
T ss_dssp HTCCHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hCCChHHHHHHcCCHHHHHHHHHHHH
Confidence 34678899999999777 66666543
No 44
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=29.10 E-value=53 Score=21.61 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCeEEeeeCC
Q 046686 24 SRDVFEAACDYARDRSGLQWEDSK 47 (70)
Q Consensus 24 s~~~fe~~~~yA~~~gvLlW~~~~ 47 (70)
+.++.+.+++.|++.|+++-.|+.
T Consensus 154 ~~~~l~~i~~~~~~~~~~li~D~a 177 (357)
T 3lws_A 154 AFSELETISRYCRERGIRLHLDGA 177 (357)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CHHHHHHHHHHHHHcCCEEEEECc
Confidence 467899999999999999987754
No 45
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=28.97 E-value=14 Score=22.52 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=18.6
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
.-.+.|.+|.-|+|.++ |..+++..
T Consensus 37 aGvs~gtlY~~F~sKe~L~~av~~~~ 62 (197)
T 2gen_A 37 SGASIGSLYHHFGNKERIHGELYLAG 62 (197)
T ss_dssp HCCCHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HCCChHHHHHHCCCHHHHHHHHHHHH
Confidence 34678899999999877 66665543
No 46
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=28.96 E-value=25 Score=21.79 Aligned_cols=26 Identities=8% Similarity=-0.101 Sum_probs=14.0
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
.-.+.|.+|.-|+|.++ |..+.+..-
T Consensus 65 AGvs~~tlY~~F~sKe~L~~a~~~~~~ 91 (237)
T 3kkd_A 65 AQVPLSATTYYFKDIDDLITDTFALFV 91 (237)
T ss_dssp HTSCTTTC-----CHHHHHHHHHHHHH
T ss_pred hCCChhHHHHHcCCHHHHHHHHHHHHH
Confidence 34678999999999877 666655443
No 47
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=28.82 E-value=41 Score=26.01 Aligned_cols=57 Identities=5% Similarity=0.018 Sum_probs=43.9
Q ss_pred ceeeeceEEecCCC---CHHHHHHHHHHHHHcCe----------------EEeeeCCcceEEEeccccHHHHHHHHhh
Q 046686 10 KDEMTRVHYYDEFP---SRDVFEAACDYARDRSG----------------LQWEDSKKMRLVVKAEIHIHIREFLRGQ 68 (70)
Q Consensus 10 Ri~~~~g~Ly~~F~---s~~~fe~~~~yA~~~gv----------------LlW~~~~kr~~~V~~~gh~~vr~f~k~~ 68 (70)
.+++.+|| -++| -+...-.+++-.+.+|+ ++-.++..+-|-|.+-+.+|+.+|.+|+
T Consensus 484 g~R~spGY--pacPd~~~q~~l~~LL~~~~~iGv~LTes~~M~P~~SVsa~~~~hp~a~Yf~~~~~~~~q~~~~a~r~ 559 (579)
T 3bul_A 484 GIRPAPGY--PACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRK 559 (579)
T ss_dssp CBCCCTTS--TTSCCGGGHHHHHHHHTHHHHHCCEECTTSCEESSSEEEEEEBCCTTCCCCCCCCBCHHHHHHHHHHT
T ss_pred ccCCCCCC--CCCcchhhHHHHHHHhCchhhhCeEECcccCccccCceEEEEEECCCCCcccCCCCcHHHHHHHHHHc
Confidence 37788886 6676 35556666775578887 4567788888989888999999999875
No 48
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.76 E-value=14 Score=22.64 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=19.2
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
.-.+.|.+|.-|+|.++ |..+.+..-
T Consensus 39 AGvs~gtlY~~F~sKe~L~~a~~~~~~ 65 (203)
T 2np5_A 39 AGVSIGAVQHHFSTKDEMFAFALRTLV 65 (203)
T ss_dssp HTCCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34578899999999777 666666543
No 49
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=28.75 E-value=18 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=18.9
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
-.+.|.+|.-|+|.++ |..+++..-
T Consensus 45 gvsk~tlY~yF~sKe~L~~a~~~~~~ 70 (199)
T 3crj_A 45 GKSTAAVHYYYDTKDDLLAAFLDYLL 70 (199)
T ss_dssp TSCHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCChhHHhhhcCCHHHHHHHHHHHHH
Confidence 4577899999999777 777666543
No 50
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=28.31 E-value=69 Score=21.39 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHcCeEEeeeCCc
Q 046686 24 SRDVFEAACDYARDRSGLQWEDSKK 48 (70)
Q Consensus 24 s~~~fe~~~~yA~~~gvLlW~~~~k 48 (70)
+.++.+.+++.|++.|+++-.|+..
T Consensus 202 ~~~~l~~l~~l~~~~~~~li~De~~ 226 (406)
T 4adb_A 202 SNAFLQGLRELCNRHNALLIFDEVQ 226 (406)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 7789999999999999999988765
No 51
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=27.66 E-value=21 Score=20.99 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=17.0
Q ss_pred eeeceEEecCCCCHHH-HHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
..+.|.+|.-|+|.++ +..+.+.
T Consensus 41 gvs~~tlY~~F~sK~~L~~~~~~~ 64 (197)
T 3rd3_A 41 GVPKGSFYHYFKSKEQFGQALLED 64 (197)
T ss_dssp TCCHHHHTTTCSCHHHHHHHHHHH
T ss_pred CCChhhHHHHcCCHHHHHHHHHHH
Confidence 4577889999999877 5555543
No 52
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=27.60 E-value=15 Score=22.68 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=18.7
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
.-.+.|.||.-|+|.++ |..+++..
T Consensus 54 aGvskgtlY~yF~sKe~L~~a~~~~~ 79 (214)
T 2oer_A 54 AGVSIGSLYQYFPNKAAILFRLQSDE 79 (214)
T ss_dssp HTCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred hCCCCchHHHhCCCHHHHHHHHHHHH
Confidence 34678899999999777 76666543
No 53
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=27.51 E-value=12 Score=22.67 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=18.0
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.||.-|+|.++ |..+++..
T Consensus 43 Gvs~~tlY~~F~sKe~L~~av~~~~ 67 (197)
T 2hyt_A 43 SLTRGALYHHFGDKKGLLAAVVEQI 67 (197)
T ss_dssp TCCTTHHHHHHSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678899999999777 66666543
No 54
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=27.49 E-value=53 Score=19.66 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHcCeEE
Q 046686 22 FPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 22 F~s~~~fe~~~~yA~~~gvLl 42 (70)
-.|+.||+.++.-|...|=+|
T Consensus 60 i~Sq~E~eEAlkva~k~~n~L 80 (87)
T 2bkf_A 60 INSQGEYEEALKMAVKQGNQL 80 (87)
T ss_dssp ECSHHHHHHHHHHHHHTTTEE
T ss_pred EecHHHHHHHHHHhccCCCEE
Confidence 368999999999999866554
No 55
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=26.89 E-value=16 Score=21.72 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=18.2
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
...+.|.+|.-|+|.++ +..+.+..
T Consensus 41 agvs~~t~Y~~F~sK~~L~~~~~~~~ 66 (204)
T 3eup_A 41 TNLTKGSIYGNFENKEAVAIAAFDYN 66 (204)
T ss_dssp HTCCHHHHTTTSSSHHHHHHHHHHHH
T ss_pred hCCCcHHHHHhCCCHHHHHHHHHHHH
Confidence 34678899999999877 55555443
No 56
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=26.79 E-value=30 Score=20.75 Aligned_cols=19 Identities=21% Similarity=0.038 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCeEEeeeC
Q 046686 28 FEAACDYARDRSGLQWEDS 46 (70)
Q Consensus 28 fe~~~~yA~~~gvLlW~~~ 46 (70)
=+.+++.|++.||.+.+|+
T Consensus 29 A~~I~e~A~e~gVPi~e~~ 47 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDV 47 (93)
T ss_dssp HHHHHHHHHHTTCCEEECH
T ss_pred HHHHHHHHHHcCCCEEECH
Confidence 3578999999999999886
No 57
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=26.46 E-value=15 Score=21.95 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=17.9
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|-+|.-|+|.++ |..+++..
T Consensus 49 Gvs~~tlY~~F~sKe~L~~~~~~~~ 73 (212)
T 3loc_A 49 GVSKTNLLYYFPSKEALYIAVLRQI 73 (212)
T ss_dssp TSCHHHHHHHSSSHHHHHHHHHHHH
T ss_pred CcCHHHHhhhCCCHHHHHHHHHHHH
Confidence 4577889999999776 66665554
No 58
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=26.42 E-value=55 Score=22.70 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=21.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCeEEe
Q 046686 20 DEFPSRDVFEAACDYARDRSGLQW 43 (70)
Q Consensus 20 ~~F~s~~~fe~~~~yA~~~gvLlW 43 (70)
+.|-|.+||..+++-|.+.|+-|-
T Consensus 71 ~~~Gt~~df~~lv~~aH~~Gi~Vi 94 (496)
T 4gqr_A 71 TRSGNEDEFRNMVTRCNNVGVRIY 94 (496)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 478899999999999999998663
No 59
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=25.81 E-value=30 Score=16.28 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=8.9
Q ss_pred ccHHHHHHHHhh
Q 046686 57 IHIHIREFLRGQ 68 (70)
Q Consensus 57 gh~~vr~f~k~~ 68 (70)
.+.+|++|.++.
T Consensus 12 ~~~~Vk~fvR~~ 23 (25)
T 3ewt_E 12 TLSQVKGFVRKN 23 (26)
T ss_pred hHHHHHHHHHHc
Confidence 367888888764
No 60
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=25.74 E-value=29 Score=20.78 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=18.5
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
...+.|.+|.-|+|.++ +..+.+..
T Consensus 49 agvs~~tlY~~F~sK~~L~~~~~~~~ 74 (216)
T 3qqa_A 49 SGGSYSNIYDGFKSKEGLFFEILDDI 74 (216)
T ss_dssp HTTSCCSSSCSCCSHHHHHHHHHHHH
T ss_pred hCCCHHHHHHhcCCHHHHHHHHHHHH
Confidence 34678999999999876 66655544
No 61
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.66 E-value=22 Score=20.96 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=18.3
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
-.+.|.+|.-|+|.++ +..+.+..-
T Consensus 42 gvs~~t~Y~~F~sK~~L~~~~~~~~~ 67 (196)
T 3he0_A 42 GVAAGTIYRYFSDKEHLLEEVRLNVA 67 (196)
T ss_dssp TSCHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCCcchHHHhcCCHHHHHHHHHHHHH
Confidence 4577899999999777 666655443
No 62
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=25.33 E-value=12 Score=22.85 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=18.3
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ |..+++..
T Consensus 43 Gvsk~tlY~~F~sKe~L~~~~~~~~ 67 (211)
T 3bhq_A 43 GASKQTVYKHFTDKETLFGEVVLST 67 (211)
T ss_dssp TCCHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578899999999777 77666654
No 63
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=25.23 E-value=28 Score=20.62 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=18.0
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
.-.+.|.+|.-|+|.++ +..+.+.
T Consensus 46 agvs~~t~Y~~F~sK~~Ll~~~~~~ 70 (211)
T 3him_A 46 LDMSPGAVYPHYKTKESLLYAISLE 70 (211)
T ss_dssp TTCCTTSSTTTCSSHHHHHHHHHHH
T ss_pred hCCCcChhhhcCCCHHHHHHHHHHH
Confidence 34678999999999877 5555554
No 64
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=25.04 E-value=18 Score=22.48 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.1
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|-+|.-|+|.++ |..+++..
T Consensus 40 GvskgtlY~~F~sKe~L~~~~~~~~ 64 (215)
T 1ui5_A 40 GVTKGALYFHFAAKEDLAHAILEIQ 64 (215)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCCchhhHhhCCCHHHHHHHHHHHH
Confidence 4577899999999777 66666544
No 65
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=24.98 E-value=24 Score=20.95 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.0
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
.-.+.|.+|.-|+|.++ +..+++.
T Consensus 41 agvs~~t~Y~~F~sK~~L~~~~~~~ 65 (203)
T 3b81_A 41 LGISKGALYHYFSSKEECADAAIEN 65 (203)
T ss_dssp HTCCHHHHHTTCSSHHHHHHHHHHH
T ss_pred hCCCchhHHHHcCCHHHHHHHHHHH
Confidence 34577889999999777 5555443
No 66
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=24.94 E-value=16 Score=22.44 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=21.0
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHHHHc
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYARDR 38 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA~~~ 38 (70)
.-.+.|-||.-|+|.++ |..+++..-+.
T Consensus 41 aGvskgtlY~~F~sKe~L~~a~~~~~~~~ 69 (210)
T 2wui_A 41 AGVSRGAVYGHYKNKIEVCLAMCDRAFGQ 69 (210)
T ss_dssp HTSCHHHHHHHCSSHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34678899999999777 77777765443
No 67
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=24.58 E-value=15 Score=22.24 Aligned_cols=24 Identities=8% Similarity=0.319 Sum_probs=17.9
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ |..+++..
T Consensus 40 gvs~gt~Y~yF~sKe~L~~~~~~~~ 64 (204)
T 3anp_C 40 HVSRGTFFNYYPYKEAVLLDYGSQL 64 (204)
T ss_dssp TSCHHHHHHHCSSTHHHHHHHHHHH
T ss_pred CCchHHHHHHcCCHHHHHHHHHHHH
Confidence 3567889999999776 66666544
No 68
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein S glycoprotein, hydrolase, metal-binding, metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A* 3d67_A*
Probab=24.50 E-value=2e+02 Score=20.78 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHcCeEEeeeCC--------cceEEEeccccHHHHHHHHhh
Q 046686 23 PSRDVFEAACDYARDRSGLQWEDSK--------KMRLVVKAEIHIHIREFLRGQ 68 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLlW~~~~--------kr~~~V~~~gh~~vr~f~k~~ 68 (70)
.+.+.-+.+.+.+...++-+|..+. .--+.|+++..+.+++++++.
T Consensus 12 ~~~~~~~~l~~l~~~~~~d~w~~~~~~~~~~~~~~dv~v~~~~~~~~~~~l~~~ 65 (401)
T 3dgv_A 12 RTSRQVQILQNVTTTYKIVLWQPVAAEYIVKGYEVHFFVNASDVSNVKAHLNAS 65 (401)
T ss_dssp CSHHHHHHHHHHHHHSSEEEEESSSGGGCCTTSCEEEEEEGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhccCeEEecCCCccccCCCCeEEEEECHHHHHHHHHHHHHc
Confidence 4567778888888999999999875 346888998888899988764
No 69
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=24.11 E-value=70 Score=20.66 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=20.0
Q ss_pred eEEecCCCCHHHHHHHHHHHHH
Q 046686 16 VHYYDEFPSRDVFEAACDYARD 37 (70)
Q Consensus 16 g~Ly~~F~s~~~fe~~~~yA~~ 37 (70)
-++|.+|.|.++=+.+.+.|+.
T Consensus 22 i~~~~~fLs~~Ec~~li~~~~~ 43 (224)
T 2jig_A 22 AFLLKNFLSDEECDYIVEKARP 43 (224)
T ss_dssp EEEETTCSCHHHHHHHHHHHGG
T ss_pred EEEEcccCCHHHHHHHHHHhhc
Confidence 3589999999999999999986
No 70
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=24.09 E-value=32 Score=20.78 Aligned_cols=19 Identities=21% Similarity=-0.059 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCeEEeeeC
Q 046686 28 FEAACDYARDRSGLQWEDS 46 (70)
Q Consensus 28 fe~~~~yA~~~gvLlW~~~ 46 (70)
=+.+++.|++.||.+.+|+
T Consensus 29 A~~I~e~A~e~gVPi~e~~ 47 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDI 47 (98)
T ss_dssp HHHHHHHHHHHTCCEEECH
T ss_pred HHHHHHHHHHcCCCeecCH
Confidence 3578999999999999886
No 71
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=24.06 E-value=18 Score=21.95 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=18.4
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ |..+++..
T Consensus 41 Gvs~~t~Y~~F~sKe~L~~a~~~~~ 65 (210)
T 3vib_A 41 GVTRDALYWHFKNKEDLFDALFQRI 65 (210)
T ss_dssp TSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHCCCHHHHHHHHHHHH
Confidence 3577899999999877 77766544
No 72
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=23.92 E-value=50 Score=24.08 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHcC---eEEeeeCCcceEEEeccccHHHHHHHHh
Q 046686 21 EFPSRDVFEAACDYARDRS---GLQWEDSKKMRLVVKAEIHIHIREFLRG 67 (70)
Q Consensus 21 ~F~s~~~fe~~~~yA~~~g---vLlW~~~~kr~~~V~~~gh~~vr~f~k~ 67 (70)
.|+|++|......-+..+| |++|.+..- +.+++.=..+++|++.
T Consensus 271 ~fLs~~DL~~TigesaalGa~GiViWGss~~---~~s~~~C~~l~~Yl~~ 317 (331)
T 2atm_A 271 TFLTETDVKKTFQEIVINGGDGIIIWGSSSD---VNSLSKCKRLQDYLLT 317 (331)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEEEECCGGG---GSSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCeEEEeccccc---cccHHHHHHHHHHHHh
Confidence 5999999999999998886 599977654 2445555668888764
No 73
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=23.90 E-value=15 Score=22.33 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=17.9
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ |..+++..
T Consensus 36 gvskgtlY~yF~sKe~L~~~~~~~~ 60 (202)
T 2id6_A 36 GVAKGLIFHYFKNKEELYYQAYMSV 60 (202)
T ss_dssp TCCTHHHHHHHSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 4578899999999777 66665543
No 74
>2ybf_B E3 ubiquitin-protein ligase RAD18; E2 ubiquitin conjugating enzyme, E3 ubiquitin ligase translesion synthesis, PCNA ubiquitination; 2.00A {Homo sapiens}
Probab=23.62 E-value=59 Score=15.57 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 046686 25 RDVFEAACDYARD 37 (70)
Q Consensus 25 ~~~fe~~~~yA~~ 37 (70)
+.+|..++|-|+.
T Consensus 8 qneFq~LVDqakk 20 (27)
T 2ybf_B 8 KSEFQLLVDQARK 20 (27)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6799999999874
No 75
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=23.27 E-value=27 Score=20.56 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=17.6
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
.-.+.|.+|.-|+|.++ +..+++.
T Consensus 37 agvs~~t~Y~~F~sK~~L~~~~~~~ 61 (199)
T 3qbm_A 37 TGLEKGGIYRHFESKEQLALAAFDY 61 (199)
T ss_dssp HTCCHHHHHTTCSSHHHHHHHHHHH
T ss_pred hCCCccHHHHhCCCHHHHHHHHHHH
Confidence 34578899999999877 5555544
No 76
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.02 E-value=67 Score=19.77 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHcCeEE
Q 046686 21 EFPSRDVFEAACDYARDRSGLQ 42 (70)
Q Consensus 21 ~F~s~~~fe~~~~yA~~~gvLl 42 (70)
.-.|+.||+.++.-|...|=+|
T Consensus 67 ~i~Sq~E~eEAlkva~k~~n~L 88 (101)
T 1wj6_A 67 SINSQGEYEEALKMAVKQGNQL 88 (101)
T ss_dssp CCCSHHHHHHHHHHHHHHTSEE
T ss_pred EEecHHHHHHHHHHhccCCCEE
Confidence 3578999999999999866655
No 77
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=22.96 E-value=20 Score=21.16 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=18.2
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
-.+.|.+|.-|+|.++ +..++++.-
T Consensus 43 gvs~~t~Y~~F~sK~~L~~~~~~~~~ 68 (190)
T 2v57_A 43 GVGRSTVHRYYPERTDLLRALARHVH 68 (190)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567889999999777 666655443
No 78
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=22.88 E-value=20 Score=20.95 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=19.0
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
...+.|.+|.-|+|.++ +..+.+..-
T Consensus 38 agvs~~t~Y~~F~sK~~L~~~~~~~~~ 64 (188)
T 3qkx_A 38 ANVAAGTIYLYFKNKDELLEQFAHRVF 64 (188)
T ss_dssp HTCCHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred hCCCcchHHHHcCCHHHHHHHHHHHHH
Confidence 34578899999999777 666665543
No 79
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=22.57 E-value=1e+02 Score=20.25 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCeEEeeeCCcce
Q 046686 24 SRDVFEAACDYARDRSGLQWEDSKKMR 50 (70)
Q Consensus 24 s~~~fe~~~~yA~~~gvLlW~~~~kr~ 50 (70)
|.++.+.+++.|++.|+++-.|+....
T Consensus 178 ~~~~l~~i~~~~~~~~~~li~De~~~~ 204 (391)
T 3dzz_A 178 SEEEVKRIAELCAKHQVLLISDEIHGD 204 (391)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 458899999999999999999887543
No 80
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=22.39 E-value=29 Score=20.37 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=17.7
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
.-.+.|.+|.-|+|.++ +..+.+.
T Consensus 38 agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (183)
T 1zk8_A 38 LGVRSPSLYNHVKGLQDVRKNLGIY 62 (183)
T ss_dssp HTSCHHHHTTTCSSHHHHHHHHHHH
T ss_pred cCCCchHHHHHcCCHHHHHHHHHHH
Confidence 34577899999999877 6555544
No 81
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.17 E-value=32 Score=20.83 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=9.5
Q ss_pred ceeeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 10 KDEMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 10 Ri~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
+.-.+.|.+|.-|+|.++ +..+.+..-
T Consensus 59 ~agvs~~t~Y~~F~sK~~Ll~~~~~~~~ 86 (212)
T 2np3_A 59 TAGVDQSLVHHFYGTKENLFLQALELPG 86 (212)
T ss_dssp ------------CCC-CHHHHHHHCHHH
T ss_pred HcCCCHHHHHHHhCCHHHHHHHHHHHhh
Confidence 455678999999999776 666665443
No 82
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=22.04 E-value=91 Score=20.89 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCeEEeeeCCc
Q 046686 23 PSRDVFEAACDYARDRSGLQWEDSKK 48 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLlW~~~~k 48 (70)
++.+..+.+++.|++.|+++-.|+..
T Consensus 197 ~~~~~l~~l~~l~~~~~~~li~Dev~ 222 (395)
T 3nx3_A 197 ANKDFYKALRKLCDEKDILLIADEIQ 222 (395)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 56777999999999999999988864
No 83
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=21.72 E-value=22 Score=20.83 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=17.8
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
..+.|.+|.-|+|.++ +..+++..
T Consensus 39 gvs~~t~Y~~F~sK~~L~~~~~~~~ 63 (195)
T 3pas_A 39 GLSPATLYIYYEDKEQLLLATFYYV 63 (195)
T ss_dssp TSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCCchHHHHHcCCHHHHHHHHHHHH
Confidence 4577889999999777 66666544
No 84
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=21.72 E-value=1e+02 Score=17.33 Aligned_cols=41 Identities=12% Similarity=-0.024 Sum_probs=27.1
Q ss_pred EecCCCCHHHHHHHHHHHHHcCeEEeeeC-----CcceE-EEecccc
Q 046686 18 YYDEFPSRDVFEAACDYARDRSGLQWEDS-----KKMRL-VVKAEIH 58 (70)
Q Consensus 18 Ly~~F~s~~~fe~~~~yA~~~gvLlW~~~-----~kr~~-~V~~~gh 58 (70)
++=.-.|.++.+.+.+.+++.|+-+-..+ ..+.+ |..++|+
T Consensus 75 l~f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~ 121 (138)
T 2a4x_A 75 IAFEFPDTASVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGN 121 (138)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEECTTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCceeeCCcccCCCcEEEEEECCCCC
Confidence 43355688899999999999998543221 22434 4457775
No 85
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}
Probab=21.57 E-value=56 Score=25.69 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCe--EEeeeCCc
Q 046686 26 DVFEAACDYARDRSG--LQWEDSKK 48 (70)
Q Consensus 26 ~~fe~~~~yA~~~gv--LlW~~~~k 48 (70)
.+-+.+++||++.|| ++|.+...
T Consensus 347 ~di~~l~~Ya~~kgV~i~lw~~~~~ 371 (641)
T 3a24_A 347 IDLKELVDYAASKNVGIILWAGYHA 371 (641)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred CCHHHHHHHHHhcCCEEEEEeeCcc
Confidence 467899999999998 67766543
No 86
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.55 E-value=25 Score=20.80 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=17.5
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
...+.|.+|.-|+|.++ +..+.+.
T Consensus 33 agvs~~t~Y~~F~sK~~L~~~~~~~ 57 (189)
T 3geu_A 33 VNIKKASLYYHFDSKKSIYEQSVKC 57 (189)
T ss_dssp TTCCHHHHTTTCSSHHHHHHHHHHH
T ss_pred hCCCHHHHHHHhCCHHHHHHHHHHH
Confidence 34678899999999877 5555443
No 87
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=21.54 E-value=40 Score=20.39 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=17.8
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ +..+++..
T Consensus 43 gvs~~t~Y~~F~sK~~Ll~~~~~~~ 67 (220)
T 3lsj_A 43 GIVPAGFYRHFSDMDQLGLALVAEV 67 (220)
T ss_dssp TSCGGGGTTTCSSHHHHHHHHHHHH
T ss_pred CCChhHHHHHcCCHHHHHHHHHHHH
Confidence 4578999999999877 55555543
No 88
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=21.51 E-value=22 Score=20.71 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=17.7
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ +..+.+..
T Consensus 35 gvs~~t~Y~~F~sK~~L~~~~~~~~ 59 (170)
T 3egq_A 35 KVSKSLIFYHFESKQKLLEEAVMHA 59 (170)
T ss_dssp TSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCCchhHHHHcCCHHHHHHHHHHHH
Confidence 4577889999999877 56655544
No 89
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=21.43 E-value=23 Score=21.47 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=17.3
Q ss_pred eeeceEEecCCCCHHH-HHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
-.+.|.+|.-|+|.++ |..+++.
T Consensus 45 gvs~~tlY~~F~sKe~L~~~~~~~ 68 (204)
T 2ibd_A 45 GILSGSLYHHFDSKESMVDEILRG 68 (204)
T ss_dssp TSCHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCCchhHHHhcCCHHHHHHHHHHH
Confidence 4577889999999777 6666554
No 90
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.40 E-value=14 Score=22.59 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.1
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|-||.-|+|.++ |..+++..
T Consensus 42 Gvsk~tlY~~F~sKe~L~~av~~~~ 66 (202)
T 2i10_A 42 GINPPSLYAAFGSKRDLFEKTLDRY 66 (202)
T ss_dssp TCCHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CCChHHHHHHhCCHHHHHHHHHHHH
Confidence 3567888989999776 66666543
No 91
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=21.39 E-value=55 Score=25.82 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHcCe-EEee
Q 046686 24 SRDVFEAACDYARDRSG-LQWE 44 (70)
Q Consensus 24 s~~~fe~~~~yA~~~gv-LlW~ 44 (70)
+++++..+++||++.|| ++++
T Consensus 184 t~~ei~elv~yA~~rgI~vvpe 205 (716)
T 2cho_A 184 EAAQLQELVAVANENEVDFVWA 205 (716)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHHcCCEEEEe
Confidence 88999999999999999 5554
No 92
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=21.38 E-value=30 Score=20.20 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=18.3
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
-.+.|.+|.-|+|.++ +..+.+..-
T Consensus 41 gvs~~t~Y~~F~sK~~L~~~~~~~~~ 66 (196)
T 3col_A 41 GIAQSNVYLYFKNKQALIDSVYARET 66 (196)
T ss_dssp TSCHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577899999999877 555555543
No 93
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=21.32 E-value=41 Score=19.08 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=34.0
Q ss_pred cccccCceeeeceEEecCCCCHHHH-HHHHHHHHHcCe-EEeeeCCcceEEEecccc
Q 046686 4 WESDLNKDEMTRVHYYDEFPSRDVF-EAACDYARDRSG-LQWEDSKKMRLVVKAEIH 58 (70)
Q Consensus 4 We~ErnRi~~~~g~Ly~~F~s~~~f-e~~~~yA~~~gv-LlW~~~~kr~~~V~~~gh 58 (70)
|+++-++.....-|-|.+|...-+| ..+...|++.|- .-|.+.-. .+.|+-..|
T Consensus 3 W~~~~~~~~i~r~f~F~~f~~a~~F~~~Va~~Ae~~~HHPdi~~~y~-~V~v~l~TH 58 (80)
T 1usm_A 3 WEERENLKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWG-RVTVEWWTH 58 (80)
T ss_dssp CEEC---CCEEEEEECSSHHHHHHHHHHHHHHHHHHTCCCEEEEETT-EEEEEECBT
T ss_pred CeEeCCccEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCcEEEeCC-EEEEEEEeC
Confidence 7887777777888999999887665 567788888875 45555433 344443333
No 94
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=21.29 E-value=37 Score=21.84 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=20.3
Q ss_pred ceeeeceEEecCCCCHHH-HHHHHHHHH
Q 046686 10 KDEMTRVHYYDEFPSRDV-FEAACDYAR 36 (70)
Q Consensus 10 Ri~~~~g~Ly~~F~s~~~-fe~~~~yA~ 36 (70)
++-.+.|.||.-|+|.++ +..+++..-
T Consensus 45 ~aGvs~~tlY~hF~~K~~Ll~~~~~~~~ 72 (237)
T 2hxo_A 45 RLATGPGAIYWHITGKAELLGAATDAVV 72 (237)
T ss_dssp HHTSCGGGGGGTCCCHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHhcCCHHHHHHHHHHHHH
Confidence 345678999999999877 666666543
No 95
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=21.18 E-value=31 Score=20.60 Aligned_cols=23 Identities=22% Similarity=0.634 Sum_probs=17.2
Q ss_pred eeeceEEecCCCCHHH-HHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDY 34 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~y 34 (70)
-.+.|.+|.-|+|.++ +..+.+.
T Consensus 56 gvs~~t~Y~~F~sK~~L~~~~~~~ 79 (212)
T 3nxc_A 56 GVSEAALYRHFPSKTRMFDSLIEF 79 (212)
T ss_dssp TSCHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCChhHHHHHCCCHHHHHHHHHHH
Confidence 4577889999999877 6555554
No 96
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=21.14 E-value=24 Score=20.91 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=17.9
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ +..+.+..
T Consensus 39 Gvs~~tly~~F~sK~~L~~~~~~~~ 63 (190)
T 3jsj_A 39 GVSKRSMYQLFESKDELLAASLKER 63 (190)
T ss_dssp TCCHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 4577889999999877 66666543
No 97
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=21.12 E-value=24 Score=21.12 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=18.2
Q ss_pred eeeeceEEecCCCCHHH-HHHHHHHH
Q 046686 11 DEMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 11 i~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
.-.+.|.+|.-|+|.++ +..+++..
T Consensus 44 agvs~~tlY~~F~sK~~L~~~~~~~~ 69 (194)
T 2q24_A 44 AGVGSGTLYRNFPTREALIEAAYRNE 69 (194)
T ss_dssp TTCCHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hCCChHHHHHHcCCHHHHHHHHHHHH
Confidence 34577889999999777 66665543
No 98
>2z3x_A SAsp, small, acid-soluble spore protein C; alpha/beta-type SAsp, bacillus subtils spore; 2.10A {Bacillus subtilis}
Probab=21.08 E-value=19 Score=20.45 Aligned_cols=15 Identities=7% Similarity=-0.079 Sum_probs=12.1
Q ss_pred HHHHHHcCeEEeeeC
Q 046686 32 CDYARDRSGLQWEDS 46 (70)
Q Consensus 32 ~~yA~~~gvLlW~~~ 46 (70)
-+.|+|+|+.+|.|-
T Consensus 17 ~EiA~ElGv~~~g~l 31 (63)
T 2z3x_A 17 LEIASEFGVQLGAET 31 (63)
T ss_dssp HHHHHHHTCCCSTTS
T ss_pred HHHHHHcCCccCCCc
Confidence 467999999988664
No 99
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}
Probab=21.04 E-value=61 Score=22.78 Aligned_cols=30 Identities=10% Similarity=-0.126 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCeEEeeeCCcceEEEec
Q 046686 26 DVFEAACDYARDRSGLQWEDSKKMRLVVKA 55 (70)
Q Consensus 26 ~~fe~~~~yA~~~gvLlW~~~~kr~~~V~~ 55 (70)
+-|..+.+||+.+|.++..-.....+++++
T Consensus 161 ~l~~~Ll~y~~~igG~lf~iGgdny~iftt 190 (268)
T 2qv6_A 161 KVKLALMEELLKYNALLFFIGGDNFMAPSN 190 (268)
T ss_dssp HHHHHHHHHHHTTTCCCEEEETTEEEEECT
T ss_pred HHHHHHHHHHHHhCCEEEEECCCEEEEEeC
Confidence 457899999999999998887777777766
No 100
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.98 E-value=24 Score=21.27 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=17.7
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
-.+.|.+|.-|+|.++ +..+.++.
T Consensus 42 gvs~~t~Y~~F~sK~~L~~~~~~~~ 66 (216)
T 3f0c_A 42 GMGKASLYYYFPDKETLFEAVIKKE 66 (216)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 4577889999999877 56555544
No 101
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=20.83 E-value=24 Score=20.92 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=18.0
Q ss_pred eeeceEEecCCCCHHH-HHHHHHHH
Q 046686 12 EMTRVHYYDEFPSRDV-FEAACDYA 35 (70)
Q Consensus 12 ~~~~g~Ly~~F~s~~~-fe~~~~yA 35 (70)
..+.|.+|.-|+|.++ +..+.+..
T Consensus 39 gvs~~tly~~F~sK~~L~~a~~~~~ 63 (194)
T 3dpj_A 39 GISRGNFYYHFKTKDEILAEVIRLR 63 (194)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHcCCHHHHHHHHHHHH
Confidence 4577889999999777 66666543
No 102
>3tp4_A Computational design of enzyme; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.98A {Synthetic construct} PDB: 2x2y_A 2bvy_A 2bvt_A
Probab=20.48 E-value=51 Score=25.10 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHc----C---eEEeeeCCcceEEEeccccHHHHHHHHh
Q 046686 27 VFEAACDYARDR----S---GLQWEDSKKMRLVVKAEIHIHIREFLRG 67 (70)
Q Consensus 27 ~fe~~~~yA~~~----g---vLlW~~~~kr~~~V~~~gh~~vr~f~k~ 67 (70)
=|..+.+..+.. . +|+|.|.....+++.-.||+...+|++=
T Consensus 299 W~t~~l~~i~~~P~v~~iaYvl~WrN~~~~h~y~Py~g~~sa~dF~~f 346 (475)
T 3tp4_A 299 WFTKVLAAIKADPVASRNAYMETGENADAGQHFVPVPGDALLEDFQAY 346 (475)
T ss_dssp HHHHHHHHHHTCTTTTCCCEEEECCCCCSSSCSSCCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhCcccceeEEEEEEcCCCCCccccccCCchhHHHHHHH
Confidence 355566666555 3 8999998888899998899999999763
No 103
>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}
Probab=20.34 E-value=68 Score=18.02 Aligned_cols=23 Identities=4% Similarity=-0.133 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHcCeEEe
Q 046686 21 EFPSRDVFEAACDYARDRSGLQW 43 (70)
Q Consensus 21 ~F~s~~~fe~~~~yA~~~gvLlW 43 (70)
.-+|.++.+.+.+.+++.|+-+-
T Consensus 79 ~v~~~~d~~~~~~~l~~~G~~~~ 101 (136)
T 2rk0_A 79 SVESMTDLDVLEERLAKAGAAFT 101 (136)
T ss_dssp EESSHHHHHHHHHHHHHHTCCBC
T ss_pred EeCCHHHHHHHHHHHHHCCCccc
Confidence 44667899999999999998653
No 104
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=20.32 E-value=82 Score=21.99 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHcCeEEeeeCCc
Q 046686 22 FPSRDVFEAACDYARDRSGLQWEDSKK 48 (70)
Q Consensus 22 F~s~~~fe~~~~yA~~~gvLlW~~~~k 48 (70)
.++.+..+.+++.|++.|+|+-.|+..
T Consensus 236 ~~~~~~l~~l~~l~~~~~~llI~DEv~ 262 (459)
T 4a6r_A 236 VPPATYWPEIERICRKYDVLLVADEVI 262 (459)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 347777899999999999999998764
No 105
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=20.25 E-value=1e+02 Score=19.97 Aligned_cols=26 Identities=23% Similarity=0.095 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCeEEeeeCCc
Q 046686 23 PSRDVFEAACDYARDRSGLQWEDSKK 48 (70)
Q Consensus 23 ~s~~~fe~~~~yA~~~gvLlW~~~~k 48 (70)
.+.++.+.+++.|++.|+++-.|+..
T Consensus 157 ~~~~~l~~i~~~~~~~~~~li~D~a~ 182 (356)
T 1v72_A 157 YTLDEIEAIGDVCKSSSLGLHMDGSR 182 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEchh
Confidence 34788999999999999999887643
No 106
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=20.12 E-value=1.1e+02 Score=21.36 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHcCeEEeeeCCcc
Q 046686 22 FPSRDVFEAACDYARDRSGLQWEDSKKM 49 (70)
Q Consensus 22 F~s~~~fe~~~~yA~~~gvLlW~~~~kr 49 (70)
.++.+..+.+++.|++.|+++-.|+...
T Consensus 248 ~~~~~~l~~l~~l~~~~g~lli~DEv~~ 275 (449)
T 2cjg_A 248 HFRPEFFAAMRELCDEFDALLIFDEVQT 275 (449)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEecccc
Confidence 4577889999999999999999888664
Done!