BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046689
MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG
RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGRPGLNFSGLSATEML
DHLASDYVDDNVDDDDDEANDVYDHNGRYDQRDHEHEIKEAVRRNDDDDDNANDEDQDVM
GYYDVAFDQVNEEDEGWCLLGEI

High Scoring Gene Products

Symbol, full name Information P value
AT5G40690 protein from Arabidopsis thaliana 1.5e-41
AT2G41730 protein from Arabidopsis thaliana 1.8e-16
AT5G24640 protein from Arabidopsis thaliana 1.8e-14

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046689
        (203 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168753 - symbol:AT5G40690 species:3702 "Arabi...   408  1.5e-41   2
TAIR|locus:2054411 - symbol:AT2G41730 "AT2G41730" species...   204  1.8e-16   1
TAIR|locus:2153949 - symbol:AT5G24640 "AT5G24640" species...   185  1.8e-14   1


>TAIR|locus:2168753 [details] [associations]
            symbol:AT5G40690 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005737 "cytoplasm"
            evidence=IDA] Prosite:PS00018 GO:GO:0005634 GO:GO:0005737
            EMBL:CP002688 InterPro:IPR018247 EMBL:AB009052 EMBL:BT025272
            IPI:IPI00536934 RefSeq:NP_198885.1 UniGene:At.30272
            UniGene:At.68073 UniGene:At.74624 IntAct:Q9FM29
            EnsemblPlants:AT5G40690.1 GeneID:834069 KEGG:ath:AT5G40690
            TAIR:At5g40690 InParanoid:Q9FM29 OMA:KFTGKCG PhylomeDB:Q9FM29
            ProtClustDB:CLSN2686190 Genevestigator:Q9FM29 Uniprot:Q9FM29
        Length = 210

 Score = 408 (148.7 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 77/123 (62%), Positives = 93/123 (75%)

Query:     1 MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
             M+REG+QHGMVRTYRI P   NPRP+++ VN   S PT GLFTKV+ +PTNHSKFTGKCG
Sbjct:     1 MKREGKQHGMVRTYRILPPSLNPRPESKLVNPLTSRPTAGLFTKVTSKPTNHSKFTGKCG 60

Query:    61 RARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDG--RPGLNFSGLSATE 118
             +ARC+DCHMHP  KSK KTKG+ K + +  +   YKM+TW+V  G  RPGL  SG SAT 
Sbjct:    61 QARCLDCHMHPVTKSKAKTKGSSK-VRTNDVT--YKMLTWQVAAGGPRPGLKLSGFSATG 117

Query:   119 MLD 121
             +LD
Sbjct:   118 ILD 120

 Score = 49 (22.3 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query:   180 MGYYDVAF----DQVNEEDEGWCLLGEI 203
             M + DV      D V E DEGW L+ E+
Sbjct:   181 MSFCDVGMMMMMDHVEEYDEGWYLVEEM 208

 Score = 41 (19.5 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query:   181 GY-YDVAFDQVNEEDE 195
             GY +D  +D+ NEE+E
Sbjct:   127 GYDHDYDYDEENEEEE 142


>TAIR|locus:2054411 [details] [associations]
            symbol:AT2G41730 "AT2G41730" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0009061 "anaerobic respiration"
            evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA]
            GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
            EMBL:AC002339 GO:GO:0009061 EMBL:BT008525 EMBL:AK117561
            IPI:IPI00537845 PIR:D84845 RefSeq:NP_181704.1 UniGene:At.42794
            UniGene:At.67803 IntAct:O22947 STRING:O22947
            EnsemblPlants:AT2G41730.1 GeneID:818772 KEGG:ath:AT2G41730
            TAIR:At2g41730 eggNOG:NOG304248 HOGENOM:HOG000090351 OMA:IVRTGMI
            PhylomeDB:O22947 ProtClustDB:CLSN2683790 ArrayExpress:O22947
            Genevestigator:O22947 Uniprot:O22947
        Length = 119

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 43/85 (50%), Positives = 53/85 (62%)

Query:     1 MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
             M+ EGR  G+VRT  I P  +NPRP   T N+ DSPP  G FTKV  + TNHS  TG+  
Sbjct:     1 MKSEGRHQGIVRTGMIHPRGFNPRP---TSNRLDSPPAFGDFTKVPSKTTNHSNTTGESE 57

Query:    61 RARCVDCHMHPACKSKDKTKGTHKL 85
             R++   CH+ PA KS  K+KG  KL
Sbjct:    58 RSKYSHCHVSPAIKSGHKSKGRRKL 82


>TAIR|locus:2153949 [details] [associations]
            symbol:AT5G24640 "AT5G24640" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB010068
            HOGENOM:HOG000090351 ProtClustDB:CLSN2683790 EMBL:AY128306
            EMBL:BT001164 IPI:IPI00534590 RefSeq:NP_197852.1 UniGene:At.30948
            EnsemblPlants:AT5G24640.1 GeneID:832535 KEGG:ath:AT5G24640
            TAIR:At5g24640 PhylomeDB:Q9FLU0 Genevestigator:Q9FLU0
            Uniprot:Q9FLU0
        Length = 118

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 39/85 (45%), Positives = 51/85 (60%)

Query:     1 MRREGRQHGMVRTYRIAPSPWNPRPDARTVNKFDSPPTCGLFTKVSQRPTNHSKFTGKCG 60
             M+ EGR  G+VRT  I P  +NPR      N+ DSPP  G FTK+  + TNHS   G+  
Sbjct:     1 MKSEGRHQGVVRTGMIHPRGFNPRH----TNRLDSPPVFGDFTKMQPKTTNHSNIIGESE 56

Query:    61 RARCVDCHMHPACKSKDKTKGTHKL 85
             R++  +CH+ PA KS  K+KG  KL
Sbjct:    57 RSKYSNCHVSPAIKSGHKSKGRRKL 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       170   0.00086  108 3  11 22  0.39    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  177 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.72u 0.10s 13.82t   Elapsed:  00:00:04
  Total cpu time:  13.72u 0.10s 13.82t   Elapsed:  00:00:04
  Start:  Mon May 20 21:00:54 2013   End:  Mon May 20 21:00:58 2013

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