Query 046689
Match_columns 203
No_of_seqs 39 out of 41
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 05:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_t 60S acidic ribosomal pr 42.5 5.2 0.00018 30.7 0.0 10 173-182 97-106 (110)
2 1qf8_A Casein kinase II; casei 40.7 13 0.00045 30.8 2.1 62 55-121 105-168 (182)
3 3izc_t 60S acidic ribosomal pr 39.3 6.3 0.00022 30.0 0.0 10 173-182 93-102 (106)
4 3iz5_v 60S acidic ribosomal pr 38.8 6.5 0.00022 30.4 0.0 10 173-182 100-109 (113)
5 3izc_v 60S acidic ribosomal pr 37.0 7.2 0.00025 29.7 0.0 10 173-182 93-102 (106)
6 4dgl_A Casein kinase II subuni 36.4 17 0.00058 31.0 2.2 63 54-121 104-168 (215)
7 1e8e_A Cytochrome C''; oxidore 25.1 48 0.0017 26.1 2.9 29 47-75 31-60 (124)
8 3iz5_s 60S acidic ribosomal pr 19.6 23 0.00078 31.2 0.0 10 173-182 306-315 (319)
9 3u5i_q A0, L10E, 60S acidic ri 18.9 24 0.00083 31.0 0.0 10 173-182 299-308 (312)
10 2zxy_A Cytochrome C552, cytoch 18.4 32 0.0011 22.0 0.5 8 63-70 11-18 (87)
No 1
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=42.49 E-value=5.2 Score=30.72 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=0.0
Q ss_pred CcccCCccce
Q 046689 173 NDEDQDVMGY 182 (203)
Q Consensus 173 ~~eeeddm~f 182 (203)
.+|.+|||||
T Consensus 97 ~EEsddDmGf 106 (110)
T 3iz5_t 97 KEESDDDMGF 106 (110)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4557788998
No 2
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=40.73 E-value=13 Score=30.78 Aligned_cols=62 Identities=23% Similarity=0.219 Sum_probs=42.3
Q ss_pred ccccCCccccccCCCCcccccCCCCCceeeeecc--CCccccceeeEEEEecCCCCCCCCCccHHHHHH
Q 046689 55 FTGKCGRARCVDCHMHPACKSKDKTKGTHKLINS--RGLVSNYKMITWRVVDGRPGLNFSGLSATEMLD 121 (203)
Q Consensus 55 ~tgkc~r~rc~~Ch~~P~~KSr~K~KGr~K~~~~--~Dv~snh~L~~WRV~~~~~~~~~~G~SA~~~L~ 121 (203)
.-|+|.|+.|.+++..|..-|--=++.+.|+.=+ +||...... ...-.+| .|.|.|---+|.
T Consensus 105 ~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~-~~~~iDG----AyFGtsFph~f~ 168 (182)
T 1qf8_A 105 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSS-RHHHTDG----AYFGTGFPHMLF 168 (182)
T ss_dssp TTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSG-GGTTSBG----GGTCSSHHHHHH
T ss_pred cCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcc-ccccccc----ceecCchHHHHH
Confidence 4599999999999999998887677888888622 687743211 0011355 566777655543
No 3
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=39.26 E-value=6.3 Score=30.04 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=0.0
Q ss_pred CcccCCccce
Q 046689 173 NDEDQDVMGY 182 (203)
Q Consensus 173 ~~eeeddm~f 182 (203)
.+|.+|||||
T Consensus 93 ~EEsddDmGf 102 (106)
T 3izc_t 93 KEESDDDMGF 102 (106)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4557788998
No 4
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=38.82 E-value=6.5 Score=30.38 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=0.0
Q ss_pred CcccCCccce
Q 046689 173 NDEDQDVMGY 182 (203)
Q Consensus 173 ~~eeeddm~f 182 (203)
.+|++|||||
T Consensus 100 ~EEsDdDmGF 109 (113)
T 3iz5_v 100 KEESDDDMGF 109 (113)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4557788998
No 5
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=36.97 E-value=7.2 Score=29.72 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=0.0
Q ss_pred CcccCCccce
Q 046689 173 NDEDQDVMGY 182 (203)
Q Consensus 173 ~~eeeddm~f 182 (203)
.+|++|||||
T Consensus 93 ~EEsdddmGf 102 (106)
T 3izc_v 93 AEESDDDMGF 102 (106)
T ss_dssp ----------
T ss_pred ccccccccCC
Confidence 4557788998
No 6
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=36.40 E-value=17 Score=31.02 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=43.9
Q ss_pred cccccCCccccccCCCCcccccCCCCCceeeeecc--CCccccceeeEEEEecCCCCCCCCCccHHHHHH
Q 046689 54 KFTGKCGRARCVDCHMHPACKSKDKTKGTHKLINS--RGLVSNYKMITWRVVDGRPGLNFSGLSATEMLD 121 (203)
Q Consensus 54 k~tgkc~r~rc~~Ch~~P~~KSr~K~KGr~K~~~~--~Dv~snh~L~~WRV~~~~~~~~~~G~SA~~~L~ 121 (203)
..-|+|.|+.|.++++.|..-|--=++.+.|+.=+ .||..... .-...++| .|.|.|---+|.
T Consensus 104 g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s-~r~~~iDG----AyFGtsFph~f~ 168 (215)
T 4dgl_A 104 GDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKS-SRHHHTDG----AYFGTGFPHMLF 168 (215)
T ss_dssp TTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSS-TTSTTSBG----GGTTTTHHHHHH
T ss_pred CCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCc-cccccccc----ceecCcchHHHH
Confidence 34599999999999999998887667888898734 58875321 11123466 577887666544
No 7
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=25.08 E-value=48 Score=26.09 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=18.1
Q ss_pred CCCCCCccccccCCc-cccccCCCCccccc
Q 046689 47 QRPTNHSKFTGKCGR-ARCVDCHMHPACKS 75 (203)
Q Consensus 47 ~Kptnhsk~tgkc~r-~rc~~Ch~~P~~KS 75 (203)
+|-.--++++|+-++ ..|..||..+....
T Consensus 31 Gkalf~~~~~~~~g~~~sCaSCH~~~~t~~ 60 (124)
T 1e8e_A 31 GKIFFNRKFKTPSGKEAACASCHTNNPANV 60 (124)
T ss_dssp TTGGGTCCEEETTTEEECTTTTSCSCTTSC
T ss_pred HHHHHhccccccCCCCCcccccCCCCCCcC
Confidence 444333455555444 78999999776554
No 8
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=19.62 E-value=23 Score=31.23 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=0.0
Q ss_pred CcccCCccce
Q 046689 173 NDEDQDVMGY 182 (203)
Q Consensus 173 ~~eeeddm~f 182 (203)
++|+||||||
T Consensus 306 ~ee~d~d~gf 315 (319)
T 3iz5_s 306 EEESDGDLGM 315 (319)
T ss_dssp ----------
T ss_pred cccccccCCC
Confidence 5567789998
No 9
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=18.91 E-value=24 Score=30.98 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=0.0
Q ss_pred CcccCCccce
Q 046689 173 NDEDQDVMGY 182 (203)
Q Consensus 173 ~~eeeddm~f 182 (203)
++|++|||||
T Consensus 299 ~ee~d~d~gf 308 (312)
T 3u5i_q 299 EEESDDDMGF 308 (312)
T ss_dssp ----------
T ss_pred cccccccCCC
Confidence 4556789998
No 10
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=18.35 E-value=32 Score=22.02 Aligned_cols=8 Identities=38% Similarity=0.974 Sum_probs=6.3
Q ss_pred ccccCCCC
Q 046689 63 RCVDCHMH 70 (203)
Q Consensus 63 rc~~Ch~~ 70 (203)
.|..||..
T Consensus 11 ~C~~CHg~ 18 (87)
T 2zxy_A 11 GCGSCHQA 18 (87)
T ss_dssp TGGGTCCS
T ss_pred CchhhcCC
Confidence 59999953
Done!