Query 046689
Match_columns 203
No_of_seqs 39 out of 41
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 05:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046689.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046689hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qf8a_ g.41.4.1 (A:) Casein k 40.4 6.3 0.00046 30.4 2.1 62 55-121 99-162 (173)
2 d1eb7a2 a.3.1.5 (A:165-323) Di 23.5 10 0.00076 27.9 0.7 12 62-73 31-42 (159)
3 d1koza_ g.3.6.2 (A:) Grammotox 21.1 20 0.0015 21.3 1.5 21 54-76 4-24 (36)
4 d1fcdc1 a.3.1.4 (C:1-80) Flavo 17.2 17 0.0012 22.7 0.6 7 63-69 10-16 (80)
5 d1lfma_ a.3.1.1 (A:) Mitochond 16.3 17 0.0012 23.0 0.4 7 63-69 13-19 (103)
6 d1iqca2 a.3.1.5 (A:151-308) Di 15.8 21 0.0015 26.1 0.9 10 63-72 32-41 (158)
7 d351ca_ a.3.1.1 (A:) Cytochrom 14.9 20 0.0015 22.4 0.5 7 63-69 11-17 (82)
8 d1c53a_ a.3.1.1 (A:) Cytochrom 14.8 14 0.001 22.7 -0.3 8 63-70 9-16 (79)
9 d2gmha3 d.58.1.6 (A:483-584) E 14.7 23 0.0017 25.1 0.8 62 31-113 36-101 (102)
10 d3c2ca_ a.3.1.1 (A:) Cytochrom 14.2 23 0.0016 23.0 0.6 7 63-69 13-19 (112)
No 1
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.36 E-value=6.3 Score=30.43 Aligned_cols=62 Identities=24% Similarity=0.237 Sum_probs=42.8
Q ss_pred ccccCCccccccCCCCcccccCCCCCceeeeecc--CCccccceeeEEEEecCCCCCCCCCccHHHHHH
Q 046689 55 FTGKCGRARCVDCHMHPACKSKDKTKGTHKLINS--RGLVSNYKMITWRVVDGRPGLNFSGLSATEMLD 121 (203)
Q Consensus 55 ~tgkc~r~rc~~Ch~~P~~KSr~K~KGr~K~~~~--~Dv~snh~L~~WRV~~~~~~~~~~G~SA~~~L~ 121 (203)
.-|+|.|+.|.+++..|.--|-.=++.+.|+-=+ +||... +-......+| .|.|.|--.+|.
T Consensus 99 ~FG~CPRv~C~~~~~LPiGlSd~~g~~~vKlyCP~C~dvY~p-~s~~~~~iDG----A~FG~sFph~fl 162 (173)
T d1qf8a_ 99 DFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTP-KSSRHHHTDG----AYFGTGFPHMLF 162 (173)
T ss_dssp TTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECC-SSGGGTTSBG----GGTCSSHHHHHH
T ss_pred CCCCCCCcccCCCcccccccCCCCCcCcceEECCChhhccCC-CCcccCcccc----hhccCchHHHHH
Confidence 4599999999999999988777667888888622 688742 1111234466 577877665543
No 2
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.54 E-value=10 Score=27.89 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=8.8
Q ss_pred cccccCCCCccc
Q 046689 62 ARCVDCHMHPAC 73 (203)
Q Consensus 62 ~rc~~Ch~~P~~ 73 (203)
..|..||..|.-
T Consensus 31 ~gCa~CH~gp~~ 42 (159)
T d1eb7a2 31 SGCSACHNGINL 42 (159)
T ss_dssp TTGGGTSCBTTT
T ss_pred cCCccccccccc
Confidence 469999976643
No 3
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=21.06 E-value=20 Score=21.31 Aligned_cols=21 Identities=57% Similarity=1.073 Sum_probs=15.3
Q ss_pred cccccCCccccccCCCCcccccC
Q 046689 54 KFTGKCGRARCVDCHMHPACKSK 76 (203)
Q Consensus 54 k~tgkc~r~rc~~Ch~~P~~KSr 76 (203)
||-|||... .+|--|-+||||
T Consensus 4 rfwgkcsqt--sdccphlacksk 24 (36)
T d1koza_ 4 RFWGKCSQT--SDCCPHLACKSK 24 (36)
T ss_dssp CSSCBCCSS--SSSCTTEESCCS
T ss_pred eeecccccc--cccCcchhhccc
Confidence 677899765 567556788885
No 4
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=17.20 E-value=17 Score=22.69 Aligned_cols=7 Identities=43% Similarity=1.236 Sum_probs=5.9
Q ss_pred ccccCCC
Q 046689 63 RCVDCHM 69 (203)
Q Consensus 63 rc~~Ch~ 69 (203)
.|..||+
T Consensus 10 ~Ca~CHG 16 (80)
T d1fcdc1 10 NCAGCHG 16 (80)
T ss_dssp TTTTTSC
T ss_pred HHHHhCc
Confidence 5999995
No 5
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}
Probab=16.32 E-value=17 Score=22.97 Aligned_cols=7 Identities=43% Similarity=1.526 Sum_probs=5.9
Q ss_pred ccccCCC
Q 046689 63 RCVDCHM 69 (203)
Q Consensus 63 rc~~Ch~ 69 (203)
.|..||.
T Consensus 13 ~C~~CH~ 19 (103)
T d1lfma_ 13 KCAQCHT 19 (103)
T ss_dssp HTTTTCC
T ss_pred cChhccC
Confidence 5999994
No 6
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=15.78 E-value=21 Score=26.10 Aligned_cols=10 Identities=60% Similarity=1.288 Sum_probs=7.9
Q ss_pred ccccCCCCcc
Q 046689 63 RCVDCHMHPA 72 (203)
Q Consensus 63 rc~~Ch~~P~ 72 (203)
.|..||..|.
T Consensus 32 gC~~CH~gp~ 41 (158)
T d1iqca2 32 GCVQCHNGPA 41 (158)
T ss_dssp TGGGTSCTTT
T ss_pred CCcccccCcc
Confidence 5999997664
No 7
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.85 E-value=20 Score=22.43 Aligned_cols=7 Identities=57% Similarity=1.445 Sum_probs=5.8
Q ss_pred ccccCCC
Q 046689 63 RCVDCHM 69 (203)
Q Consensus 63 rc~~Ch~ 69 (203)
.|..||.
T Consensus 11 gC~~CH~ 17 (82)
T d351ca_ 11 GCVACHA 17 (82)
T ss_dssp TGGGTBC
T ss_pred CchhhcC
Confidence 3999995
No 8
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=14.75 E-value=14 Score=22.72 Aligned_cols=8 Identities=50% Similarity=1.165 Sum_probs=6.2
Q ss_pred ccccCCCC
Q 046689 63 RCVDCHMH 70 (203)
Q Consensus 63 rc~~Ch~~ 70 (203)
-|..||+.
T Consensus 9 ~Ca~CHG~ 16 (79)
T d1c53a_ 9 SCVGCHGA 16 (79)
T ss_pred HHHHhCCC
Confidence 39999953
No 9
>d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=14.72 E-value=23 Score=25.08 Aligned_cols=62 Identities=21% Similarity=0.517 Sum_probs=40.3
Q ss_pred ccCCCCCC----ccceeeecCCCCCCccccccCCccccccCCCCcccccCCCCCceeeeeccCCccccceeeEEEEecCC
Q 046689 31 NKFDSPPT----CGLFTKVSQRPTNHSKFTGKCGRARCVDCHMHPACKSKDKTKGTHKLINSRGLVSNYKMITWRVVDGR 106 (203)
Q Consensus 31 ~~~~sp~~----~g~f~~v~~Kptnhsk~tgkc~r~rc~~Ch~~P~~KSr~K~KGr~K~~~~~Dv~snh~L~~WRV~~~~ 106 (203)
...++|.+ ||.|--+.......-|+. =....|..|- ++||.-.+.-++|++-.|.
T Consensus 36 ~~y~~Pc~r~CPAgVYE~~~~~~~~~~~l~--In~~nCleC~-------------------tC~i~~p~~nI~W~~P~GG 94 (102)
T d2gmha3 36 SIYDGPEQRFCPAGVYEFVPLEQGDGFRLQ--INAQNCVHCK-------------------TCDIKDPSQNINWVVPEGG 94 (102)
T ss_dssp HHHCCTHHHHCTTCCEEEEECSSTTCEEEE--ECGGGCCCCC-------------------HHHHHCTTCCEEECCCSTT
T ss_pred ccccchheeeccceEEEEeecCCCCccEEE--EEeCCceeec-------------------cceeeCCCCceEEECCCCC
Confidence 35556653 777776654332222331 1234566662 6888888899999998888
Q ss_pred CCCCCCC
Q 046689 107 PGLNFSG 113 (203)
Q Consensus 107 ~~~~~~G 113 (203)
.|++|++
T Consensus 95 ~Gp~Y~~ 101 (102)
T d2gmha3 95 GGPAYNG 101 (102)
T ss_dssp CBCCCSC
T ss_pred CCcCCCC
Confidence 9999975
No 10
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=14.20 E-value=23 Score=23.04 Aligned_cols=7 Identities=43% Similarity=1.549 Sum_probs=5.9
Q ss_pred ccccCCC
Q 046689 63 RCVDCHM 69 (203)
Q Consensus 63 rc~~Ch~ 69 (203)
.|..||.
T Consensus 13 ~C~~CH~ 19 (112)
T d3c2ca_ 13 KCLACHT 19 (112)
T ss_dssp GGTTTCC
T ss_pred HHHHhCC
Confidence 4999995
Done!