BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046691
MDYDFRNRANSSYSLYGPPPSASSGGSAPSHHPMYGSSLYPRIGQQGSGHSMGPPVSRTS
SYNASPSPSSSSSGLGIRVALKPEYRITPPPTLSPQVGDIPRSNFHFDFDFERRVLAEAE
KENQNWSRLGMENIPSKNEPTSSVGSGSDPVVSRYIALGLNREAVHIAVANYGDNPTKVR
EFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGSSA

High Scoring Gene Products

Symbol, full name Information P value
AT5G53330 protein from Arabidopsis thaliana 4.0e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046691
        (222 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2154237 - symbol:AT5G53330 "AT5G53330" species...   531  4.0e-51   1


>TAIR|locus:2154237 [details] [associations]
            symbol:AT5G53330 "AT5G53330" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR009060 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003746 InterPro:IPR015940
            PROSITE:PS50030 SUPFAM:SSF46934 UniGene:At.19882 UniGene:At.49168
            EMBL:AY084524 IPI:IPI00530119 RefSeq:NP_568790.1
            ProteinModelPortal:Q8LG11 SMR:Q8LG11 STRING:Q8LG11 PaxDb:Q8LG11
            PRIDE:Q8LG11 EnsemblPlants:AT5G53330.1 GeneID:835414
            KEGG:ath:AT5G53330 TAIR:At5g53330 eggNOG:NOG242100
            HOGENOM:HOG000030518 InParanoid:Q8LG11 OMA:PTKVQEF PhylomeDB:Q8LG11
            ProtClustDB:CLSN2690005 Genevestigator:Q8LG11 Uniprot:Q8LG11
        Length = 221

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 119/228 (52%), Positives = 141/228 (61%)

Query:     1 MDYDFRNRANXXXXXXXXXXXXXXXXXXXXXXXMYGSSLYPRIGQQ-GSGHSM-GPPVXX 58
             MDYD+RN++                        MYG   YP+IGQQ G G     PP   
Sbjct:     1 MDYDYRNKSGGPSYPRPMYGPPSTSPSPSSNHPMYG---YPKIGQQTGPGPQFFSPP--- 54

Query:    59 XXXXXXXXXXXXXXXGLGIRVALKPEYRITPPPTLSPQVGDIPRSNFHFDFDFERRVLAE 118
                            G+GIRV LKPEYRITPPP L P+VGDI RS+F FDF  ER+VLAE
Sbjct:    55 -ERNSSFQHNTSPSSGIGIRVNLKPEYRITPPPQLLPRVGDIHRSSFQFDFGLERKVLAE 113

Query:   119 AEKENQNWSRLGMENIPSK-NEPTXXXXXXXXXXXX---RYIALGLNREAVHIAVANYGD 174
             AEK+N +WS+ G EN P+K +EP+               +Y A GLNREAV+IAVANYGD
Sbjct:   114 AEKDNPDWSKFGSENPPAKFHEPSPSSVGQMQGVDHVVMKYTASGLNREAVNIAVANYGD 173

Query:   175 NPTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLL-GSS 221
             NPTKV+EFANG+T +REMGF +N VA+ L M+ENDTDKALAHLL GSS
Sbjct:   174 NPTKVQEFANGFTAIREMGFPTNAVADALFMFENDTDKALAHLLHGSS 221


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       170   0.00086  108 3  11 22  0.43    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.17u 0.08s 15.25t   Elapsed:  00:00:02
  Total cpu time:  15.17u 0.08s 15.25t   Elapsed:  00:00:02
  Start:  Mon May 20 21:03:10 2013   End:  Mon May 20 21:03:12 2013

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