BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046691
         (222 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5XIS7|UBAP1_RAT Ubiquitin-associated protein 1 OS=Rattus norvegicus GN=Ubap1 PE=2
           SV=1
          Length = 502

 Score = 41.6 bits (96), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 159 GLNREAVHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLL 218
           G +   V  A+  +  +  K+ EF    +  +EMGF   ++ EVL+++ ND D AL  L+
Sbjct: 437 GFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLM 496

Query: 219 G 219
            
Sbjct: 497 A 497


>sp|Q8BH48|UBAP1_MOUSE Ubiquitin-associated protein 1 OS=Mus musculus GN=Ubap1 PE=1 SV=1
          Length = 502

 Score = 41.6 bits (96), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 159 GLNREAVHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLL 218
           G +   V  A+  +  +  K+ EF    +  +EMGF   ++ EVL+++ ND D AL  L+
Sbjct: 437 GFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLM 496

Query: 219 G 219
            
Sbjct: 497 A 497


>sp|Q9NZ09|UBAP1_HUMAN Ubiquitin-associated protein 1 OS=Homo sapiens GN=UBAP1 PE=1 SV=1
          Length = 502

 Score = 41.6 bits (96), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 159 GLNREAVHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLL 218
           G +   V  A+  +  +  K+ EF    +  +EMGF   ++ EVL+++ ND D AL  L+
Sbjct: 437 GFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLM 496

Query: 219 G 219
            
Sbjct: 497 A 497


>sp|Q96DN5|WDR67_HUMAN WD repeat-containing protein 67 OS=Homo sapiens GN=WDR67 PE=2 SV=2
          Length = 1066

 Score = 32.7 bits (73), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 89  PPPTLSPQVGDIPRSNFHFDFDFERRVLAEAEKENQNWSRLGMENIPSKNEPTSSVGSGS 148
           PPP L   + D+P++      D + +V +   ++        M+    K + T    S  
Sbjct: 345 PPPPLVKVIEDLPKNKLSSS-DLKMKVTSGRVQQPAKSRESKMQTRILKQDLTGDFESKK 403

Query: 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREF 182
           + +       GLN++ + I +  YG+ PTK R F
Sbjct: 404 NELPD-----GLNKKRLQILLKGYGEYPTKYRMF 432


>sp|A2YCI3|CSLD5_ORYSI Putative cellulose synthase-like protein D5 OS=Oryza sativa
          subsp. indica GN=CSLD5 PE=3 SV=1
          Length = 1012

 Score = 30.8 bits (68), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 17 GPPPSASSGGSAPSHHPM--YGSSLYPRIGQQGSGHSMGPPVSRTSSYNASPSPSSSSSG 74
           PP + S+GG+ P   P+  YGSS   R+  +  G   G  + R  S    P+PSS+ S 
Sbjct: 24 APPAAPSAGGARPGDLPLPPYGSSSSSRLVNRRGGGDDGAKMDRRLSTARVPAPSSNKSL 83

Query: 75 L 75
          L
Sbjct: 84 L 84


>sp|Q5Z6E5|CSLD5_ORYSJ Cellulose synthase-like protein D5 OS=Oryza sativa subsp.
          japonica GN=CSLD5 PE=2 SV=1
          Length = 1012

 Score = 30.8 bits (68), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 17 GPPPSASSGGSAPSHHPM--YGSSLYPRIGQQGSGHSMGPPVSRTSSYNASPSPSSSSSG 74
           PP + S+GG+ P   P+  YGSS   R+  +  G   G  + R  S    P+PSS+ S 
Sbjct: 24 APPAAPSAGGARPGDLPLPPYGSSSSSRLVNRRGGGDDGAKMDRRLSTARVPAPSSNKSL 83

Query: 75 L 75
          L
Sbjct: 84 L 84


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.129    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,869,530
Number of Sequences: 539616
Number of extensions: 4245164
Number of successful extensions: 11912
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 11477
Number of HSP's gapped (non-prelim): 600
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)