Query 046691
Match_columns 222
No_of_seqs 32 out of 34
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 05:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ae4_A Ubiquitin-associated pr 99.7 9.9E-18 3.4E-22 132.4 7.4 75 146-220 6-114 (118)
2 2lbc_A Ubiquitin carboxyl-term 99.2 5.7E-11 1.9E-15 92.6 8.3 74 147-220 2-116 (126)
3 1oqy_A HHR23A, UV excision rep 98.7 1.5E-08 5.1E-13 92.4 5.3 39 145-183 165-203 (368)
4 1ify_A HHR23A, UV excision rep 98.5 6.6E-08 2.3E-12 65.5 3.9 40 181-220 7-46 (49)
5 2knz_A Ubiquilin-4; cytoplasm, 98.5 7.8E-08 2.7E-12 66.1 4.2 41 180-220 9-50 (53)
6 2jy5_A Ubiquilin-1; UBA, alter 98.5 7.2E-08 2.5E-12 66.1 3.5 40 181-220 11-51 (52)
7 2g3q_A Protein YBL047C; endocy 98.5 8.6E-08 2.9E-12 62.5 3.7 36 185-220 7-42 (43)
8 1z96_A DNA-damage, UBA-domain 98.4 2.2E-07 7.6E-12 58.8 3.5 37 182-218 4-40 (40)
9 1vg5_A RSGI RUH-014, rhomboid 98.4 1.6E-07 5.6E-12 69.1 2.7 34 187-220 34-67 (73)
10 2bwb_A Ubiquitin-like protein 98.3 4.2E-07 1.5E-11 61.2 4.1 41 180-220 5-46 (46)
11 1wji_A Tudor domain containing 98.3 3.2E-07 1.1E-11 65.4 3.5 36 185-220 12-47 (63)
12 1wr1_B Ubiquitin-like protein 98.2 7.4E-07 2.5E-11 62.9 3.8 42 180-221 15-57 (58)
13 2dak_A Ubiquitin carboxyl-term 98.2 7.3E-07 2.5E-11 62.7 3.1 36 148-183 9-44 (63)
14 2cpw_A CBL-interacting protein 98.2 1.1E-06 3.7E-11 62.6 3.7 35 186-220 23-58 (64)
15 2dah_A Ubiquilin-3; UBA domain 98.2 7.8E-07 2.7E-11 61.7 2.5 40 181-220 8-48 (54)
16 1vej_A Riken cDNA 4931431F19; 98.1 1.1E-06 3.8E-11 65.0 3.1 39 182-220 29-68 (74)
17 1wiv_A UBP14, ubiquitin-specif 98.1 1.7E-06 5.9E-11 63.0 3.8 35 186-220 33-67 (73)
18 2crn_A Ubash3A protein; compac 98.1 1.5E-06 5.3E-11 62.0 3.1 34 186-219 13-47 (64)
19 2ekk_A UBA domain from E3 ubiq 98.1 1.9E-06 6.6E-11 57.2 3.2 35 185-220 12-46 (47)
20 2dna_A Unnamed protein product 98.1 3.1E-06 1.1E-10 61.8 4.4 41 180-220 17-58 (67)
21 2dag_A Ubiquitin carboxyl-term 98.1 2.1E-06 7.1E-11 62.8 3.2 33 187-219 14-47 (74)
22 1whc_A RSGI RUH-027, UBA/UBX 3 98.0 2.6E-06 9E-11 60.5 3.4 33 187-219 14-47 (64)
23 2cp8_A NEXT to BRCA1 gene 1 pr 98.0 4.4E-06 1.5E-10 59.0 3.6 40 181-220 8-48 (54)
24 3k9o_A Ubiquitin-conjugating e 98.0 5.4E-06 1.9E-10 68.8 4.7 72 147-220 126-201 (201)
25 1dv0_A DNA repair protein HHR2 98.0 2.2E-06 7.6E-11 57.8 2.0 37 185-221 7-43 (47)
26 2dai_A Ubadc1, ubiquitin assoc 98.0 4.7E-06 1.6E-10 62.3 3.6 34 186-219 33-66 (83)
27 1veg_A NEDD8 ultimate buster-1 97.9 5.4E-06 1.9E-10 62.6 3.5 41 145-185 26-66 (83)
28 2dkl_A Trinucleotide repeat co 97.9 7.8E-06 2.7E-10 61.4 3.9 36 185-220 24-59 (85)
29 2cwb_A Chimera of immunoglobul 97.8 1.1E-05 3.8E-10 63.4 4.0 40 181-220 65-105 (108)
30 4ae4_A Ubiquitin-associated pr 97.8 1.2E-05 4.3E-10 63.2 3.6 36 184-219 10-45 (118)
31 1vg5_A RSGI RUH-014, rhomboid 97.8 7.3E-05 2.5E-09 55.0 7.4 41 144-184 25-65 (73)
32 2g3q_A Protein YBL047C; endocy 97.8 1.9E-05 6.6E-10 51.3 3.7 38 147-184 3-40 (43)
33 2lbc_A Ubiquitin carboxyl-term 97.7 1.9E-05 6.6E-10 61.3 4.0 36 185-220 6-42 (126)
34 1ify_A HHR23A, UV excision rep 97.7 4.3E-05 1.5E-09 51.6 4.8 37 149-185 9-45 (49)
35 2dak_A Ubiquitin carboxyl-term 97.7 6.4E-05 2.2E-09 52.8 5.7 36 185-220 12-47 (63)
36 1wj7_A Hypothetical protein (R 97.7 5.1E-05 1.8E-09 59.6 5.5 41 181-221 38-79 (104)
37 1vek_A UBP14, ubiquitin-specif 97.7 2.7E-05 9.3E-10 58.1 3.5 40 145-184 26-66 (84)
38 1wji_A Tudor domain containing 97.6 8.7E-05 3E-09 52.7 5.4 39 147-185 8-46 (63)
39 1wgn_A UBAP1, ubiquitin associ 97.6 3.2E-05 1.1E-09 56.4 2.7 36 185-220 22-57 (63)
40 3ihp_A Ubiquitin carboxyl-term 97.6 0.00018 6E-09 71.1 8.6 74 146-219 650-757 (854)
41 2ekk_A UBA domain from E3 ubiq 97.6 0.00011 3.7E-09 48.7 4.8 38 146-184 7-44 (47)
42 2crn_A Ubash3A protein; compac 97.5 0.00014 4.8E-09 51.8 5.2 40 145-184 6-46 (64)
43 1veg_A NEDD8 ultimate buster-1 97.4 0.00022 7.6E-09 53.7 5.8 35 185-219 32-66 (83)
44 2jy5_A Ubiquilin-1; UBA, alter 97.4 0.0003 1E-08 48.0 6.0 37 148-184 12-49 (52)
45 3e46_A Ubiquitin-conjugating e 97.4 0.00012 4.1E-09 63.8 4.9 72 147-220 178-253 (253)
46 1z96_A DNA-damage, UBA-domain 97.4 0.00024 8.1E-09 44.7 4.8 35 149-183 5-39 (40)
47 2cpw_A CBL-interacting protein 97.4 0.00049 1.7E-08 48.8 6.8 38 147-184 18-56 (64)
48 2knz_A Ubiquilin-4; cytoplasm, 97.4 0.00022 7.5E-09 48.8 4.7 37 149-185 12-49 (53)
49 1whc_A RSGI RUH-027, UBA/UBX 3 97.3 0.00041 1.4E-08 49.1 5.5 39 147-185 8-47 (64)
50 2dag_A Ubiquitin carboxyl-term 97.3 0.00041 1.4E-08 50.5 5.6 39 147-185 8-47 (74)
51 1oqy_A HHR23A, UV excision rep 97.3 0.00011 3.8E-09 67.0 3.1 39 182-220 168-206 (368)
52 2ooa_A E3 ubiquitin-protein li 97.3 0.0002 6.9E-09 50.4 3.7 34 185-218 14-47 (52)
53 1wiv_A UBP14, ubiquitin-specif 97.2 0.00052 1.8E-08 49.9 5.5 39 146-184 27-65 (73)
54 2d9s_A CBL E3 ubiquitin protei 97.2 0.00025 8.5E-09 50.1 3.4 34 186-219 13-46 (53)
55 2bwb_A Ubiquitin-like protein 97.2 0.00049 1.7E-08 46.1 4.7 36 149-184 8-44 (46)
56 1vek_A UBP14, ubiquitin-specif 97.2 0.00066 2.2E-08 50.6 5.8 36 185-220 32-68 (84)
57 2oo9_A E3 ubiquitin-protein li 97.1 0.00049 1.7E-08 47.5 3.7 35 185-219 7-41 (46)
58 2juj_A E3 ubiquitin-protein li 97.1 0.00034 1.2E-08 49.9 3.1 35 185-219 10-44 (56)
59 1vej_A Riken cDNA 4931431F19; 97.0 0.0013 4.3E-08 48.6 6.0 37 149-185 30-67 (74)
60 2dai_A Ubadc1, ubiquitin assoc 97.0 0.00086 2.9E-08 50.0 5.0 38 147-184 28-65 (83)
61 2dkl_A Trinucleotide repeat co 97.0 0.00074 2.5E-08 50.7 4.7 37 149-185 22-58 (85)
62 1wr1_B Ubiquitin-like protein 97.0 0.001 3.5E-08 46.8 4.9 37 149-185 18-55 (58)
63 2qsf_X RAD23, UV excision repa 96.9 0.0007 2.4E-08 56.8 4.4 41 181-221 129-169 (171)
64 2dhy_A CUE domain-containing p 96.8 0.00067 2.3E-08 49.2 2.8 39 180-219 16-57 (67)
65 1wgl_A TOLL-interacting protei 96.7 0.0015 5.2E-08 46.0 4.0 36 184-220 11-49 (59)
66 2dah_A Ubiquilin-3; UBA domain 96.7 0.0024 8.3E-08 44.1 4.9 38 148-185 9-47 (54)
67 1dv0_A DNA repair protein HHR2 96.5 0.00072 2.5E-08 45.4 1.3 36 149-184 5-40 (47)
68 2ooa_A E3 ubiquitin-protein li 96.3 0.0063 2.2E-07 42.8 5.2 42 148-195 11-52 (52)
69 2d9s_A CBL E3 ubiquitin protei 96.3 0.0082 2.8E-07 42.4 5.6 36 149-184 10-45 (53)
70 2cos_A Serine/threonine protei 96.1 0.0029 1E-07 44.8 2.5 41 150-196 11-52 (54)
71 2pwq_A Ubiquitin conjugating e 95.9 0.003 1E-07 53.7 2.4 72 147-221 141-216 (216)
72 1wgn_A UBAP1, ubiquitin associ 95.9 0.0077 2.6E-07 43.9 3.9 37 148-184 19-55 (63)
73 3k9o_A Ubiquitin-conjugating e 95.8 0.0099 3.4E-07 49.2 4.9 36 149-184 164-199 (201)
74 2cos_A Serine/threonine protei 95.6 0.019 6.5E-07 40.7 5.0 34 186-219 13-47 (54)
75 2cwb_A Chimera of immunoglobul 95.4 0.018 6.2E-07 45.1 4.7 38 148-185 66-104 (108)
76 2dna_A Unnamed protein product 95.2 0.029 9.8E-07 40.8 5.0 36 150-185 21-57 (67)
77 2juj_A E3 ubiquitin-protein li 94.7 0.038 1.3E-06 39.4 4.3 34 149-182 8-41 (56)
78 2cp8_A NEXT to BRCA1 gene 1 pr 94.5 0.053 1.8E-06 38.1 4.6 38 149-186 10-48 (54)
79 1otr_A Protein CUE2; protein-p 94.4 0.029 9.8E-07 38.5 3.0 36 185-221 7-45 (49)
80 1tte_A Ubiquitin-conjugating e 94.4 0.028 9.6E-07 47.7 3.6 31 188-218 175-214 (215)
81 3e46_A Ubiquitin-conjugating e 94.3 0.051 1.7E-06 47.3 5.1 37 149-185 216-252 (253)
82 4dbg_B Ring finger protein 31; 94.3 0.16 5.3E-06 42.7 7.8 58 160-217 75-138 (162)
83 2cp9_A EF-TS, EF-TSMT, elongat 94.2 0.037 1.3E-06 39.9 3.4 31 188-218 15-46 (64)
84 1q02_A Sequestosome 1; helical 93.8 0.075 2.6E-06 37.4 4.3 35 184-218 12-48 (52)
85 3dfg_A Xcrecx, regulatory prot 93.5 0.28 9.5E-06 39.2 7.7 70 148-217 34-119 (162)
86 2oo9_A E3 ubiquitin-protein li 93.1 0.18 6.3E-06 34.7 5.2 32 149-180 5-36 (46)
87 2qsf_X RAD23, UV excision repa 90.8 0.21 7.2E-06 41.8 4.1 37 148-184 130-166 (171)
88 1wj7_A Hypothetical protein (R 90.8 0.31 1E-05 38.2 4.7 36 149-184 40-76 (104)
89 4fp9_B Mterf domain-containing 90.3 0.55 1.9E-05 42.1 6.5 21 186-206 117-137 (335)
90 1p3q_Q VPS9P, vacuolar protein 88.2 0.18 6.1E-06 35.4 1.5 43 179-221 9-53 (54)
91 3m66_A Mterf3, mterf domain-co 86.5 1.1 3.9E-05 37.2 5.7 21 150-170 78-98 (270)
92 3mva_O Transcription terminati 86.2 1.5 5.1E-05 38.1 6.5 58 149-206 200-264 (343)
93 4dbg_B Ring finger protein 31; 86.2 0.88 3E-05 38.2 4.8 60 158-219 27-100 (162)
94 3m66_A Mterf3, mterf domain-co 85.5 1 3.5E-05 37.5 4.9 22 150-171 7-28 (270)
95 1q08_A Zn(II)-responsive regul 84.7 0.94 3.2E-05 32.3 3.8 29 179-207 2-30 (99)
96 1tte_A Ubiquitin-conjugating e 84.7 1.9 6.5E-05 36.4 6.2 31 148-178 169-199 (215)
97 3mva_O Transcription terminati 84.6 0.73 2.5E-05 40.1 3.8 53 148-206 19-75 (343)
98 4fp9_B Mterf domain-containing 84.5 2.6 8.9E-05 37.7 7.4 55 149-206 47-102 (335)
99 3c1d_A Protein ORAA, regulator 83.7 3.9 0.00013 32.2 7.3 67 148-214 22-114 (159)
100 2pwq_A Ubiquitin conjugating e 83.4 0.23 7.7E-06 42.1 0.0 36 149-184 178-213 (216)
101 3d5l_A Regulatory protein RECX 83.2 2.4 8.1E-05 35.4 6.1 61 148-208 78-155 (221)
102 1b0n_B Protein (SINI protein); 82.1 1 3.4E-05 31.7 2.9 43 176-218 9-54 (57)
103 3e3v_A Regulatory protein RECX 78.1 2.1 7E-05 34.6 4.0 60 148-207 35-111 (177)
104 1ufz_A Hypothetical protein BA 77.1 1.2 4.2E-05 33.7 2.2 37 184-220 36-75 (83)
105 3hh0_A Transcriptional regulat 76.5 2 7E-05 33.7 3.5 41 177-217 45-85 (146)
106 2di0_A Activating signal coint 71.3 3.2 0.00011 30.4 3.1 26 196-221 29-54 (71)
107 1r8d_A Transcription activator 71.2 6 0.00021 29.0 4.7 61 150-215 17-81 (109)
108 3ihp_A Ubiquitin carboxyl-term 70.8 2.5 8.5E-05 41.9 3.2 36 185-220 655-691 (854)
109 3qao_A LMO0526 protein, MERR-l 67.3 7.2 0.00025 33.1 5.0 40 177-216 44-83 (249)
110 1q06_A Transcriptional regulat 62.8 9.9 0.00034 29.1 4.6 56 150-208 15-72 (135)
111 2vz4_A Tipal, HTH-type transcr 60.3 5.4 0.00018 29.3 2.6 53 150-206 16-71 (108)
112 2dg6_A Putative transcriptiona 60.1 18 0.00063 30.4 6.2 66 149-217 14-85 (222)
113 3gpv_A Transcriptional regulat 58.0 11 0.00036 29.5 4.0 55 149-206 30-86 (148)
114 3gp4_A Transcriptional regulat 57.9 11 0.00039 29.3 4.2 31 177-207 43-73 (142)
115 1uxc_A FRUR (1-57), fructose r 55.5 20 0.00068 24.6 4.7 47 157-206 9-59 (65)
116 3dfg_A Xcrecx, regulatory prot 55.2 20 0.00068 28.3 5.3 58 149-206 85-159 (162)
117 1v92_A NSFL1 cofactor P47; 3-h 53.2 16 0.00055 22.9 3.6 39 176-220 6-44 (46)
118 2dal_A Protein KIAA0794; FAS a 52.7 18 0.00062 24.8 4.1 28 193-220 27-54 (62)
119 1tr8_A Conserved protein (MTH1 51.2 8.7 0.0003 29.4 2.5 26 192-217 76-101 (102)
120 2kna_A Baculoviral IAP repeat- 49.7 28 0.00096 26.3 5.1 41 149-189 28-72 (104)
121 2jml_A DNA binding domain/tran 47.6 12 0.00042 25.9 2.6 55 149-207 19-78 (81)
122 3k6g_A Telomeric repeat-bindin 46.7 18 0.00063 28.6 3.7 32 190-221 22-53 (111)
123 3e3v_A Regulatory protein RECX 46.3 19 0.00064 28.9 3.9 63 149-211 87-168 (177)
124 2xag_B REST corepressor 1; ami 41.6 5.5 0.00019 38.0 0.0 26 194-219 159-184 (482)
125 2dzl_A Protein FAM100B; UBA-li 41.0 49 0.0017 23.2 4.9 38 177-220 19-56 (66)
126 3mvc_A Globin protein 6; oxyge 40.6 32 0.0011 26.8 4.3 42 164-206 67-119 (161)
127 1ixs_A Holliday junction DNA h 39.5 32 0.0011 23.8 3.7 23 149-171 18-40 (62)
128 3mkq_A Coatomer beta'-subunit; 39.3 72 0.0024 28.4 6.8 68 151-220 686-762 (814)
129 1r8e_A Multidrug-efflux transp 38.9 19 0.00064 29.4 2.8 27 180-206 50-76 (278)
130 2hsg_A Glucose-resistance amyl 37.0 49 0.0017 26.9 5.0 47 157-205 11-57 (332)
131 2k5e_A Uncharacterized protein 36.4 33 0.0011 24.1 3.4 22 196-217 40-61 (73)
132 2dae_A KIAA0733 protein; mitog 35.4 15 0.00051 27.4 1.5 24 195-218 25-48 (75)
133 2fi0_A Conserved domain protei 35.2 44 0.0015 23.6 4.0 42 176-217 12-70 (81)
134 1qpz_A PURA, protein (purine n 35.0 75 0.0025 25.9 5.8 47 157-205 9-55 (340)
135 2zhg_A Redox-sensitive transcr 33.9 32 0.0011 27.0 3.3 54 150-206 26-80 (154)
136 2l8n_A Transcriptional repress 33.5 33 0.0011 23.6 3.0 46 157-205 18-64 (67)
137 2dam_A ETEA protein; KIAA0887, 32.7 59 0.002 22.7 4.2 25 196-220 34-58 (67)
138 3rjv_A Putative SEL1 repeat pr 32.4 1.2E+02 0.0041 22.9 6.3 11 207-217 102-112 (212)
139 2oyo_A Uncharacterized peroxid 31.5 48 0.0016 26.1 4.0 48 158-205 105-169 (196)
140 3c1d_A Protein ORAA, regulator 31.2 37 0.0013 26.5 3.3 26 149-174 83-108 (159)
141 3c1l_A Putative antioxidant de 30.8 60 0.0021 25.1 4.4 49 157-205 96-161 (188)
142 2pfx_A Uncharacterized peroxid 30.6 60 0.0021 25.3 4.4 49 157-205 99-164 (191)
143 4g26_A Pentatricopeptide repea 29.8 81 0.0028 28.5 5.7 17 151-167 92-108 (501)
144 3e7l_A Transcriptional regulat 29.2 74 0.0025 21.0 4.1 37 160-196 19-60 (63)
145 2yg9_A DNA-3-methyladenine gly 28.4 1.4E+02 0.0046 24.8 6.4 67 151-219 65-150 (225)
146 1cuk_A RUVA protein; DNA repai 27.7 49 0.0017 27.5 3.6 35 184-218 162-199 (203)
147 2lva_A Ubiquitin carboxyl-term 33.6 13 0.00044 30.2 0.0 35 185-219 21-57 (129)
148 3t6p_A Baculoviral IAP repeat- 26.6 89 0.0031 27.9 5.3 39 148-186 119-161 (345)
149 2prr_A Alkylhydroperoxidase AH 26.0 68 0.0023 25.2 4.0 20 186-205 146-165 (197)
150 1v5x_A PRA isomerase, phosphor 25.2 18 0.0006 30.0 0.4 36 155-191 150-201 (203)
151 3ory_A Flap endonuclease 1; hy 25.0 33 0.0011 30.7 2.2 32 171-207 309-341 (363)
152 3d5l_A Regulatory protein RECX 24.2 1E+02 0.0035 25.4 4.9 58 149-206 130-206 (221)
153 4aaj_A N-(5'-phosphoribosyl)an 23.7 22 0.00076 30.0 0.8 34 155-188 177-225 (228)
154 2ztd_A Holliday junction ATP-d 23.4 67 0.0023 27.1 3.7 35 184-218 166-205 (212)
155 1ixs_A Holliday junction DNA h 23.0 72 0.0025 21.9 3.2 22 164-185 19-40 (62)
156 3gt0_A Pyrroline-5-carboxylate 22.7 1.1E+02 0.0039 24.3 4.8 54 164-217 185-243 (247)
157 2kz2_A Calmodulin, CAM; TR2C, 22.5 1.1E+02 0.0038 20.7 4.1 59 148-209 14-77 (94)
158 2pmy_A RAS and EF-hand domain- 21.3 39 0.0013 22.7 1.5 45 163-210 27-74 (91)
159 3rjv_A Putative SEL1 repeat pr 20.9 2.2E+02 0.0074 21.4 5.9 66 150-218 7-77 (212)
160 3mca_A HBS1, elongation factor 20.7 21 0.00071 33.6 0.0 27 194-220 50-76 (592)
161 1vz0_A PARB, chromosome partit 20.7 2.9E+02 0.0098 22.8 7.0 32 151-185 126-157 (230)
162 2k53_A A3DK08 protein; NESG, C 20.5 1.1E+02 0.0039 21.5 3.9 40 178-217 8-59 (76)
163 3h5t_A Transcriptional regulat 20.2 97 0.0033 25.5 4.0 53 151-205 11-65 (366)
164 3q8k_A Flap endonuclease 1; he 20.2 44 0.0015 29.6 2.0 26 175-205 301-326 (341)
No 1
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.71 E-value=9.9e-18 Score=132.40 Aligned_cols=75 Identities=27% Similarity=0.466 Sum_probs=68.8
Q ss_pred CCCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHHH----------------------------------HHHHHh
Q 046691 146 SGSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFANG----------------------------------YTILRE 191 (222)
Q Consensus 146 ~~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~~----------------------------------~~~L~E 191 (222)
..+-.+|.+|++|||++++|.+||...|.|.+|++|||.. +++|.|
T Consensus 6 ~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~e 85 (118)
T 4ae4_A 6 PSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKE 85 (118)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHH
Confidence 3455689999999999999999999999999999988754 789999
Q ss_pred cCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 192 MGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 192 MGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
|||+.+.|++||..|+||.|||+|.|++.
T Consensus 86 MGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 99999999999999999999999999975
No 2
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.19 E-value=5.7e-11 Score=92.61 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=66.3
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHcCC-ChhHHHHHHHH----------------------------------------
Q 046691 147 GSDPVVSRYIALGLNREAVHIAVANYGD-NPTKVREFANG---------------------------------------- 185 (222)
Q Consensus 147 ~~DP~V~ky~amG~~reaV~~Av~~yGd-d~~KV~EFl~~---------------------------------------- 185 (222)
+.+..|.+|++|||+++++.+||..-|. |.+.+.+||..
T Consensus 2 ~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~ 81 (126)
T 2lbc_A 2 IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEI 81 (126)
T ss_dssp CCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHH
Confidence 3456899999999999999999998877 88888888722
Q ss_pred HHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 186 YTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
+.+|.+|||+.+.+..||..++||.++|++.|++.
T Consensus 82 v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 82 VAIITSMGFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 57899999999999999999999999999999975
No 3
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.67 E-value=1.5e-08 Score=92.36 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHH
Q 046691 145 GSGSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFA 183 (222)
Q Consensus 145 ~~~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl 183 (222)
+...+..|.+|++|||+|+.|.+||..-+.|+++++|||
T Consensus 165 g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L 203 (368)
T 1oqy_A 165 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYL 203 (368)
T ss_dssp TTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344577999999999999999999999999999999998
No 4
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.52 E-value=6.6e-08 Score=65.47 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 181 EFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 181 EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
++-..+.+|.+|||+.+.+..||-.|+||.|+|++.|+++
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3555678999999999999999999999999999999875
No 5
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.52 E-value=7.8e-08 Score=66.07 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCC-CCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 180 REFANGYTILREMGF-SSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 180 ~EFl~~~~~L~EMGF-p~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.+|-..+.+|++||| ..+.+..||..++||.++|++.|++.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 467788999999999 99999999999999999999999975
No 6
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.49 E-value=7.2e-08 Score=66.12 Aligned_cols=40 Identities=33% Similarity=0.499 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCC-CCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 181 EFANGYTILREMGF-SSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 181 EFl~~~~~L~EMGF-p~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
+|-..+.+|.+||| ..+.+..||..++||.++|++.|++.
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45667899999999 88999999999999999999999975
No 7
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.49 E-value=8.6e-08 Score=62.53 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=33.4
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.+.+|.+|||+.+.+..||-.|+||.|+|++.|+++
T Consensus 7 ~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 7 AVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 468999999999999999999999999999999875
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.38 E-value=2.2e-07 Score=58.78 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHh
Q 046691 182 FANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLL 218 (222)
Q Consensus 182 Fl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LL 218 (222)
+-....+|.+|||+.+.+..||-.|+||.++|++.|+
T Consensus 4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 4 LNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3446789999999999999999999999999999885
No 9
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.35 E-value=1.6e-07 Score=69.10 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=20.2
Q ss_pred HHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 187 TILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 187 ~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
++|.+|||+.+.|..||-+|+||.|+|++.|++.
T Consensus 34 ~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 34 QKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4555555555555555566666666666666653
No 10
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.33 E-value=4.2e-07 Score=61.18 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHhccCCHHHHHHHHhcc
Q 046691 180 REFANGYTILREMGFS-SNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 180 ~EFl~~~~~L~EMGFp-~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
..|-..+.+|++|||. .+.+..||..++||.++|++.|+++
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 3566778999999996 5568999999999999999999874
No 11
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.32 E-value=3.2e-07 Score=65.39 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.+.+|.+|||+.+.+..||..|+||.|+|++.|++.
T Consensus 12 ~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 12 ALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 356888888888888888888888899998888864
No 12
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.24 E-value=7.4e-07 Score=62.93 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCC-CchHHHHHHhccCCHHHHHHHHhccC
Q 046691 180 REFANGYTILREMGFS-SNNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 180 ~EFl~~~~~L~EMGFp-~~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
..|-..+.+|++|||. .+.+..||..++||.++|++.|+++.
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 5677789999999996 66789999999999999999999864
No 13
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=7.3e-07 Score=62.75 Aligned_cols=36 Identities=11% Similarity=0.326 Sum_probs=18.7
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHH
Q 046691 148 SDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFA 183 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl 183 (222)
.+..|.+|++|||+++++..||...+.|.+++.|||
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L 44 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWI 44 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344555555555555555555554444555555554
No 14
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.18 E-value=1.1e-06 Score=62.59 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=24.8
Q ss_pred HHHHHhcCCCCchHHHHHHhccC-CHHHHHHHHhcc
Q 046691 186 YTILREMGFSSNNVAEVLIMYEN-DTDKALAHLLGS 220 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~~dN-D~DKAL~~LLs~ 220 (222)
+.+|.+|||+.+.+..||..|+| |.|+|++.|++.
T Consensus 23 i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 23 LDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 45667777777777777777776 777777777754
No 15
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.16 E-value=7.8e-07 Score=61.74 Aligned_cols=40 Identities=33% Similarity=0.400 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCCc-hHHHHHHhccCCHHHHHHHHhcc
Q 046691 181 EFANGYTILREMGFSSN-NVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 181 EFl~~~~~L~EMGFp~~-~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
+|-..+.+|++|||... .+..||..+++|.++|++.|++.
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45567899999999775 47999999999999999999964
No 16
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.14 E-value=1.1e-06 Score=64.98 Aligned_cols=39 Identities=23% Similarity=0.493 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCC-CchHHHHHHhccCCHHHHHHHHhcc
Q 046691 182 FANGYTILREMGFS-SNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 182 Fl~~~~~L~EMGFp-~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
|-..+.+|++|||. .+.+..||..++||.++|++.|++.
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 44467899999994 6788999999999999999999875
No 17
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.12 E-value=1.7e-06 Score=63.05 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 186 YTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
+++|.+|||+.+.+..||..|+||.++|++.|++.
T Consensus 33 v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 33 VDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 46788888888888888888888888888888875
No 18
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.10 E-value=1.5e-06 Score=61.99 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCchHHHHHHhccC-CHHHHHHHHhc
Q 046691 186 YTILREMGFSSNNVAEVLIMYEN-DTDKALAHLLG 219 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~~dN-D~DKAL~~LLs 219 (222)
+.+|.+|||+.+.+.+||..++| |.+.|++.|+.
T Consensus 13 v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 13 LEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 34566666666666666666655 66666666654
No 19
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=1.9e-06 Score=57.22 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.+.+|.+|||+.+.+..||..+ ||.|.|++.|++.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 12 QLQQLMDMGFTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 3567777777777777777777 4788888777754
No 20
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.08 E-value=3.1e-06 Score=61.82 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCCCc-hHHHHHHhccCCHHHHHHHHhcc
Q 046691 180 REFANGYTILREMGFSSN-NVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 180 ~EFl~~~~~L~EMGFp~~-~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
..|-..+.+|++|||... .+..||..++||.++|++.|++.
T Consensus 17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 17 VRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 467788999999999655 45899999999999999999975
No 21
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.1e-06 Score=62.75 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=16.4
Q ss_pred HHHHhcCCCCchHHHHHHhccC-CHHHHHHHHhc
Q 046691 187 TILREMGFSSNNVAEVLIMYEN-DTDKALAHLLG 219 (222)
Q Consensus 187 ~~L~EMGFp~~~VaeAL~~~dN-D~DKAL~~LLs 219 (222)
.+|.+|||+.+.+..||..|+| |.|+|++.|+.
T Consensus 14 ~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 14 IQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 3444555555555555555543 45555555543
No 22
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.04 E-value=2.6e-06 Score=60.47 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=15.8
Q ss_pred HHHHhcCCCCchHHHHHHhc-cCCHHHHHHHHhc
Q 046691 187 TILREMGFSSNNVAEVLIMY-ENDTDKALAHLLG 219 (222)
Q Consensus 187 ~~L~EMGFp~~~VaeAL~~~-dND~DKAL~~LLs 219 (222)
.+|.+|||+.+.+..||..| +||.|+|++.|+.
T Consensus 14 ~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 14 ESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 34444444444444444444 3445555554443
No 23
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.98 E-value=4.4e-06 Score=58.98 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCC-CCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 181 EFANGYTILREMGF-SSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 181 EFl~~~~~L~EMGF-p~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.|...+.+|.|||| -.+.-..||.+|++|.++|++.||..
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47788999999999 77888999999999999999999964
No 24
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.98 E-value=5.4e-06 Score=68.82 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHcCCCHHH----HHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 147 GSDPVVSRYIALGLNREA----VHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 147 ~~DP~V~ky~amG~~rea----V~~Av~~yGdd~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
|.+..++++... ++++ |..-++.|...+.+..+|-....+|.+|||..+.|-+||..|++|.++|++.|++.
T Consensus 126 p~n~~aa~~~~~--~~~~f~~~a~~~~~~~a~~~~~~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 126 PQDAVVANQYKQ--NPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp CSCHHHHHHHHH--CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred cccHHHHHHHHH--CHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 455556555533 2333 33334456666666678888899999999999999999999999999999999873
No 25
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=97.98 E-value=2.2e-06 Score=57.76 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhccC
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
...+|.+|||+.+.|.+||..|++|.+.|...|++..
T Consensus 7 aI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 7 AIERLKALGFPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp HHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4678999999999999999999999999999998753
No 26
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=4.7e-06 Score=62.32 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=21.7
Q ss_pred HHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 186 YTILREMGFSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
+.+|.+|||+.+.+..||..|+||.+.|++.|++
T Consensus 33 i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 33 LRQLTEMGFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4556666666666666666666666666666664
No 27
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.94 E-value=5.4e-06 Score=62.56 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 145 GSGSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 145 ~~~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
..+.+..|.+|++|||++++|..||...+.|.+++.|||..
T Consensus 26 ~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 26 ASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34456678888888888888888888777777777777643
No 28
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.90 E-value=7.8e-06 Score=61.42 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.+.+|.+|||+.+.+.+||..+++|.|.|++.|+..
T Consensus 24 ~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 24 LIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 367888888888888888888888999999888864
No 29
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=97.84 E-value=1.1e-05 Score=63.36 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCC-chHHHHHHhccCCHHHHHHHHhcc
Q 046691 181 EFANGYTILREMGFSS-NNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 181 EFl~~~~~L~EMGFp~-~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.|-..+.+|+||||.. +.+..||..+++|.++||+.|+++
T Consensus 65 ~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 65 QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp TTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4566789999999965 699999999999999999999975
No 30
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=97.80 E-value=1.2e-05 Score=63.25 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 184 NGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 184 ~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
..+.+|.+|||+.+.|..||..+.||.|+|++.|+.
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 457899999999999999999999999999999986
No 31
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.80 E-value=7.3e-05 Score=54.96 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=36.9
Q ss_pred CCCCCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 144 VGSGSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 144 ~~~~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
.....|..|.+|++|||+++.|..||...+.|.+++.|||.
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34445789999999999999999999999999999999985
No 32
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.78 E-value=1.9e-05 Score=51.28 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 147 GSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 147 ~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
|.+..|.+|++|||+++.|..||...+.|.+++.|||.
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34568999999999999999999999999999999984
No 33
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=97.75 E-value=1.9e-05 Score=61.27 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCchHHHHHHhccC-CHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYEN-DTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dN-D~DKAL~~LLs~ 220 (222)
.+++|.+|||+...+++||..|+| |.++|++.|+..
T Consensus 6 ~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 6 SVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp HHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 468999999999999999999988 999999999864
No 34
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.71 E-value=4.3e-05 Score=51.55 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=34.3
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
+..|.+|++|||+++.|..||...+.|.+++.|||..
T Consensus 9 ~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5689999999999999999999999999999999854
No 35
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=6.4e-05 Score=52.75 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.+.+|.+|||+.+.+..||..|+||.|+|++.|+..
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 12 CVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 467999999999999999999999999999999864
No 36
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.69 E-value=5.1e-05 Score=59.60 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhc-CCCCchHHHHHHhccCCHHHHHHHHhccC
Q 046691 181 EFANGYTILREM-GFSSNNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 181 EFl~~~~~L~EM-GFp~~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
+|-....+|.|| ||..+.+..||..||||.++||+.|+.+.
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 565667899999 99999999999999999999999999763
No 37
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.66 E-value=2.7e-05 Score=58.12 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCCCcHHHHHHHHcCCCHHHHHHHHHHcCC-ChhHHHHHHH
Q 046691 145 GSGSDPVVSRYIALGLNREAVHIAVANYGD-NPTKVREFAN 184 (222)
Q Consensus 145 ~~~~DP~V~ky~amG~~reaV~~Av~~yGd-d~~KV~EFl~ 184 (222)
..+.+..|.+|++|||++++|.+||..-++ |.+.++|||.
T Consensus 26 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~ 66 (84)
T 1vek_A 26 PVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLL 66 (84)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345677889999999999999999887764 8888888874
No 38
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.62 E-value=8.7e-05 Score=52.73 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=35.5
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 147 GSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 147 ~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
+.+..|.+|++|||++++|..||...+.|.+++.|||..
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 467799999999999999999999999999999999853
No 39
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.57 E-value=3.2e-05 Score=56.36 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
+...|..|||..+.+..||-+++||.|+|+|-|.+.
T Consensus 22 ~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 22 CVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 367888999999999999999999999999998864
No 40
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.56 E-value=0.00018 Score=71.13 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=62.3
Q ss_pred CCCcHHHHHHHHcCCCHHHHHHHHHHcCC-ChhHHHHHH---------------------------------HHHHHHHh
Q 046691 146 SGSDPVVSRYIALGLNREAVHIAVANYGD-NPTKVREFA---------------------------------NGYTILRE 191 (222)
Q Consensus 146 ~~~DP~V~ky~amG~~reaV~~Av~~yGd-d~~KV~EFl---------------------------------~~~~~L~E 191 (222)
.+...++..|++|||++.+...|+..-|. +.+-+.+++ ..+..|.+
T Consensus 650 ~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~ 729 (854)
T 3ihp_A 650 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVS 729 (854)
T ss_dssp ---CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHT
T ss_pred CcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHH
Confidence 45667999999999999999999998877 566666655 23678999
Q ss_pred cCCCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 192 MGFSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 192 MGFp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
|||..+....||...+||.++|++.+.+
T Consensus 730 mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 730 MGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 9999999999999999999999999875
No 41
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=0.00011 Score=48.71 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 146 SGSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 146 ~~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
.+.+..|.+|++|||+++++..||..-| |.+.+.|||.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 3467799999999999999999999887 8999999974
No 42
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.50 E-value=0.00014 Score=51.78 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHHcCCCHHHHHHHHHHcCC-ChhHHHHHHH
Q 046691 145 GSGSDPVVSRYIALGLNREAVHIAVANYGD-NPTKVREFAN 184 (222)
Q Consensus 145 ~~~~DP~V~ky~amG~~reaV~~Av~~yGd-d~~KV~EFl~ 184 (222)
+.+....|.+|++|||++++|.+||..-|. |.+.++|||.
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~ 46 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLH 46 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345566899999999999999999998877 9999999984
No 43
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.44 E-value=0.00022 Score=53.74 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
.+.+|.+|||..+.|..||-+++||.++|++.|++
T Consensus 32 ~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 32 SINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35789999999999999999999999999999997
No 44
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=97.44 E-value=0.0003 Score=48.00 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=34.1
Q ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHH
Q 046691 148 SDPVVSRYIALGL-NREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 148 ~DP~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
-+..|.+|++||| +++++..||...+.|.+++.|||.
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3568999999999 999999999999999999999984
No 45
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.43 E-value=0.00012 Score=63.78 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHcCCCHHH----HHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 147 GSDPVVSRYIALGLNREA----VHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 147 ~~DP~V~ky~amG~~rea----V~~Av~~yGdd~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
|.+..++++... +++. |..-++.|...+.+..+|-....+|.||||..+.|-.||-.|+.|.++|++.|+++
T Consensus 178 Pln~eaa~l~~~--d~~~f~~~ar~~t~~yA~~~~~~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 178 PQDAVVANQYKQ--NPEMFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp CSCHHHHHHHHH--CHHHHHHHHHHHHHHHHCCSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred hhhHHHHHHHHH--CHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 455555555433 2333 33344466666666778888899999999999999999999999999999999973
No 46
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.41 E-value=0.00024 Score=44.66 Aligned_cols=35 Identities=9% Similarity=0.228 Sum_probs=32.6
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREFA 183 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl 183 (222)
+..|.+|++|||+++.+..||..-+.|.+++.+|+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55899999999999999999999999999999987
No 47
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.38 E-value=0.00049 Score=48.80 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHcCC-ChhHHHHHHH
Q 046691 147 GSDPVVSRYIALGLNREAVHIAVANYGD-NPTKVREFAN 184 (222)
Q Consensus 147 ~~DP~V~ky~amG~~reaV~~Av~~yGd-d~~KV~EFl~ 184 (222)
+.+..|.+|++|||++++|..||..-+. |.+.++|||.
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5567899999999999999999999887 9999999984
No 48
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=97.38 E-value=0.00022 Score=48.77 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=33.5
Q ss_pred cHHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 149 DPVVSRYIALGL-NREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 149 DP~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
+..|.+|++||| +++++..||...+.|.+++.|||..
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 346899999999 9999999999999999999999853
No 49
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.30 E-value=0.00041 Score=49.14 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHcC-CChhHHHHHHHH
Q 046691 147 GSDPVVSRYIALGLNREAVHIAVANYG-DNPTKVREFANG 185 (222)
Q Consensus 147 ~~DP~V~ky~amG~~reaV~~Av~~yG-dd~~KV~EFl~~ 185 (222)
+.+..|.+|++|||++++|.+||..-| .|.+.++|||..
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 8 AELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 456689999999999999999999996 699999999853
No 50
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00041 Score=50.51 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHcCC-ChhHHHHHHHH
Q 046691 147 GSDPVVSRYIALGLNREAVHIAVANYGD-NPTKVREFANG 185 (222)
Q Consensus 147 ~~DP~V~ky~amG~~reaV~~Av~~yGd-d~~KV~EFl~~ 185 (222)
+.+..|.+|++|||++++|.+||..-+. |.+.++|||..
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 5677999999999999999999998886 89999999853
No 51
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.28 E-value=0.00011 Score=66.96 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 182 FANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 182 Fl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
|-....+|.+|||+.+.|..||-.++||.|+|++.|+++
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344458999999999999999999999999999999875
No 52
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=97.28 E-value=0.0002 Score=50.44 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHh
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLL 218 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LL 218 (222)
...+|.+|||+.+.|-.||...+||.|-|...|+
T Consensus 14 ~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl 47 (52)
T 2ooa_A 14 KIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456777777777777777777777777776665
No 53
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.23 E-value=0.00052 Score=49.89 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 146 SGSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 146 ~~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
.+.+..|.+|++|||++++|..||..-+.|.++++|||.
T Consensus 27 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 27 DIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp SSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356779999999999999999999999999999999985
No 54
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.19 E-value=0.00025 Score=50.14 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 186 YTILREMGFSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
..+|.+|||+.+.|-.||..++||.|-|...|+.
T Consensus 13 I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 13 IERLMSQGYSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5677788888888888888888888888777764
No 55
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=97.19 E-value=0.00049 Score=46.11 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=33.0
Q ss_pred cHHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHH
Q 046691 149 DPVVSRYIALGL-NREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 149 DP~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
+..|.+|++||| +++++..||...+.|.++++|||.
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567899999999 689999999999999999999985
No 56
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.18 E-value=0.00066 Score=50.59 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCchHHHHHHhcc-CCHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYE-NDTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~d-ND~DKAL~~LLs~ 220 (222)
.+.+|.+|||+.+.+..||..+. +|.++|++.|++.
T Consensus 32 ~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 32 IVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35689999999999999999885 6999999999974
No 57
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=97.06 E-value=0.00049 Score=47.50 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
....|.+|||..+.|..||..++||.+.|.+.|+.
T Consensus 7 ~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 7 EIENLMSQGYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 46789999999999999999999999999998874
No 58
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=97.06 E-value=0.00034 Score=49.95 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
...+|.+|||..+.|-.||...+||.+-|...|+.
T Consensus 10 ~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 10 EIENLMSQGYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 45789999999999999999999999999988874
No 59
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.03 E-value=0.0013 Score=48.59 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=34.0
Q ss_pred cHHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 149 DPVVSRYIALGL-NREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 149 DP~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
+..|.+|++||| ++++|..||...+.|.++++|||..
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 568999999999 7999999999999999999999863
No 60
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.00086 Score=50.02 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 147 GSDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 147 ~~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
+.+..|.+|++|||++++|..||..-+.|.+.++|||.
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~ 65 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI 65 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45668999999999999999999988889999999984
No 61
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.01 E-value=0.00074 Score=50.65 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=33.3
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
+..|.+|++|||++++|..||..-+.|.+.+.|||..
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6689999999999999999998878899999999753
No 62
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.98 E-value=0.001 Score=46.81 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=33.6
Q ss_pred cHHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 149 DPVVSRYIALGL-NREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 149 DP~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
+..+.+|.+||| +++++..||...+.|.+++.|||..
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 568899999999 6999999999999999999999853
No 63
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=96.94 E-value=0.0007 Score=56.77 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhccC
Q 046691 181 EFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 181 EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
|.-....+|.+|||+.+.|-+||..||.|.+.|...|+..+
T Consensus 129 ee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~ 169 (171)
T 2qsf_X 129 EDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 169 (171)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC-
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 33455789999999999999999999999999999999753
No 64
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.00067 Score=49.23 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCC---chHHHHHHhccCCHHHHHHHHhc
Q 046691 180 REFANGYTILREMGFSS---NNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 180 ~EFl~~~~~L~EMGFp~---~~VaeAL~~~dND~DKAL~~LLs 219 (222)
.||-..+.+|++| ||. ..|..+|..|+||.|+||+.||.
T Consensus 16 ~~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 16 LEFNQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCSHHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3556678889999 985 56899999999999999999996
No 65
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.70 E-value=0.0015 Score=46.04 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCC---chHHHHHHhccCCHHHHHHHHhcc
Q 046691 184 NGYTILREMGFSS---NNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 184 ~~~~~L~EMGFp~---~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
..+.+|++| ||. ..|..+|..|+||.|+||+.||.-
T Consensus 11 e~l~~L~em-FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDM-FPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHH-CSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 456789999 875 669999999999999999999974
No 66
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.69 E-value=0.0024 Score=44.07 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=33.9
Q ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 148 SDPVVSRYIALGL-NREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 148 ~DP~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
-+..+.+|.+||| +++++..||...+.|-+++.|||..
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3678999999999 6678899999999999999999864
No 67
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=96.53 E-value=0.00072 Score=45.40 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=33.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
+..|.+|++|||++..|..|+..-|.|.+.+.+||-
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf 40 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAYFACEKNENLAANFLL 40 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 458999999999999999999999999999999873
No 68
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=96.32 E-value=0.0063 Score=42.83 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=33.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCC
Q 046691 148 SDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFANGYTILREMGFS 195 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~~~~~L~EMGFp 195 (222)
-+..|++|++|||+|+.|..||..-..|-+-+..+ |+|..||
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~Aani------Llef~~~ 52 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSI------LREFAFP 52 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHH------HHHHCCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHH------HHHhcCC
Confidence 34789999999999999999999888887766544 4555554
No 69
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.29 E-value=0.0082 Score=42.39 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=30.1
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
+--|++|++|||+|+.|..||..-..|-+-+..+|.
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345999999999999999999998888776665543
No 70
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.09 E-value=0.0029 Score=44.85 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHhcCCCC
Q 046691 150 PVVSRYIALGLNREAVHIAVANYGD-NPTKVREFANGYTILREMGFSS 196 (222)
Q Consensus 150 P~V~ky~amG~~reaV~~Av~~yGd-d~~KV~EFl~~~~~L~EMGFp~ 196 (222)
.-+..|++|||++++|++||..=|. +-+-+.|| |..|+|+.
T Consensus 11 qmlq~L~eMGFd~erae~Alk~Tg~~Gle~Amew------L~k~~~~~ 52 (54)
T 2cos_A 11 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEY------ISKMSGPS 52 (54)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHH------HHHHSCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHH------HHHhcCCC
Confidence 4577888888888888888887666 55555554 45677765
No 71
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=95.93 E-value=0.003 Score=53.65 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=12.2
Q ss_pred CCcHHHHHHHHcCCCHHH----HHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhccC
Q 046691 147 GSDPVVSRYIALGLNREA----VHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 147 ~~DP~V~ky~amG~~rea----V~~Av~~yGdd~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
|.++.++++... ++++ |..-++.|...+.. .++-....+|.+|||..+.+-.||..++-|+++|++.||+++
T Consensus 141 Pln~eaa~~~~~--d~~~f~~~ar~~t~~ya~~~~~-~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 141 PQDAEVAKMYKE--NHALFVKTASVWTKTFATGPKE-EPREVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp CSCHHHHHHHHH--CHHHHHHHHHHHHHHHSCCC---------------------------------------------
T ss_pred cccHHHHHHHHH--CHHHHHHHHHHHHHHhcCCCcc-cchhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 455555555432 3332 23333445543221 145566788999999999999999999999999999999763
No 72
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.86 E-value=0.0077 Score=43.87 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=34.0
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 148 SDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
+...|..+++|||+++.|..||+.-|.|-+++.||+-
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLF 55 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLF 55 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4557999999999999999999999999999999973
No 73
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=95.80 E-value=0.0099 Score=49.18 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=34.3
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
|..|.+|++|||+++.|..||...+.|.+++.|+|.
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 779999999999999999999999999999999985
No 74
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.62 E-value=0.019 Score=40.68 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCchHHHHHHhccC-CHHHHHHHHhc
Q 046691 186 YTILREMGFSSNNVAEVLIMYEN-DTDKALAHLLG 219 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~~dN-D~DKAL~~LLs 219 (222)
+.+|.||||+++.|..||-+-+| ..+.||+.|+-
T Consensus 13 lq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 68999999999999999999888 79999999874
No 75
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=95.40 E-value=0.018 Score=45.12 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=34.4
Q ss_pred CcHHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 148 SDPVVSRYIALGL-NREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 148 ~DP~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
-+..+.+|.+||| +++++.+||..-+.|.++++|+|..
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3779999999999 6789999999999999999999864
No 76
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.23 E-value=0.029 Score=40.81 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=32.3
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 150 PVVSRYIALGL-NREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 150 P~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
..+.+|.+||| +++++..||..-+.|.++++|||..
T Consensus 21 ~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 21 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 37899999998 7888899999999999999999864
No 77
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=94.67 E-value=0.038 Score=39.44 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=28.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREF 182 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EF 182 (222)
|..|++|++|||+|+.|.+||..=..|-+-+..+
T Consensus 8 e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNi 41 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNI 41 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHH
Confidence 5589999999999999999999877777665544
No 78
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.49 E-value=0.053 Score=38.11 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=33.9
Q ss_pred cHHHHHHHHcCC-CHHHHHHHHHHcCCChhHHHHHHHHH
Q 046691 149 DPVVSRYIALGL-NREAVHIAVANYGDNPTKVREFANGY 186 (222)
Q Consensus 149 DP~V~ky~amG~-~reaV~~Av~~yGdd~~KV~EFl~~~ 186 (222)
.+...+|.+||| ++++-.+||...+.|-++|+|-|..+
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 348889999999 99999999999999999999987654
No 79
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=94.40 E-value=0.029 Score=38.50 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCC---chHHHHHHhccCCHHHHHHHHhccC
Q 046691 185 GYTILREMGFSS---NNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 185 ~~~~L~EMGFp~---~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
...+|.|| ||. ..|+-+|.+|++|.|+|++.||...
T Consensus 7 ~v~~L~EM-FP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 7 KLSILMDM-FPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHH-CSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 45678888 664 6788999999999999999999763
No 80
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=94.39 E-value=0.028 Score=47.69 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=23.8
Q ss_pred HHHhcCCCCchHHHHHHhccCCH---------HHHHHHHh
Q 046691 188 ILREMGFSSNNVAEVLIMYENDT---------DKALAHLL 218 (222)
Q Consensus 188 ~L~EMGFp~~~VaeAL~~~dND~---------DKAL~~LL 218 (222)
+|.+|||..+.|-+||-.|+.|. +|.|+.||
T Consensus 175 ~~~~mg~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 214 (215)
T 1tte_A 175 EFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELL 214 (215)
T ss_dssp HHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHcCCCcccchhhhhHHHHHHHHh
Confidence 34678888888888888887775 67777776
No 81
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=94.27 E-value=0.051 Score=47.28 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=34.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
|..|.+|++|||++++|..||...+-|.+++.|+|..
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 6799999999999999999999999999999999853
No 82
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=94.25 E-value=0.16 Score=42.70 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHHHH-----HHHHHhcC-CCCchHHHHHHhccCCHHHHHHHH
Q 046691 160 LNREAVHIAVANYGDNPTKVREFANG-----YTILREMG-FSSNNVAEVLIMYENDTDKALAHL 217 (222)
Q Consensus 160 ~~reaV~~Av~~yGdd~~KV~EFl~~-----~~~L~EMG-Fp~~~VaeAL~~~dND~DKAL~~L 217 (222)
++...+..|+..-|.|..+++.-|.. |.+|...| |..+.+-+||-.|.+|++.||-.|
T Consensus 75 ~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 75 FSCQEARRAWLDRHGNLDEAVEECVRTRRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 67788999999999999998888754 99999999 567889999999999999999776
No 83
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=94.21 E-value=0.037 Score=39.91 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=25.2
Q ss_pred HHHh-cCCCCchHHHHHHhccCCHHHHHHHHh
Q 046691 188 ILRE-MGFSSNNVAEVLIMYENDTDKALAHLL 218 (222)
Q Consensus 188 ~L~E-MGFp~~~VaeAL~~~dND~DKAL~~LL 218 (222)
+||| -|-.-.+.++||..||+|.++|++.|=
T Consensus 15 ~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 15 KLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp HHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3444 367778999999999999999999873
No 84
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=93.85 E-value=0.075 Score=37.40 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCch--HHHHHHhccCCHHHHHHHHh
Q 046691 184 NGYTILREMGFSSNN--VAEVLIMYENDTDKALAHLL 218 (222)
Q Consensus 184 ~~~~~L~EMGFp~~~--VaeAL~~~dND~DKAL~~LL 218 (222)
.++.++..|||.-+. ...+|...+.|..|||+.+=
T Consensus 12 ~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 467899999999765 47999999999999999863
No 85
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=93.46 E-value=0.28 Score=39.17 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=53.8
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHc---C--CChhHHHHHHHH-----------HHHHHhcCCCCchHHHHHHhccCCHH
Q 046691 148 SDPVVSRYIALGLNREAVHIAVANY---G--DNPTKVREFANG-----------YTILREMGFSSNNVAEVLIMYENDTD 211 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~~y---G--dd~~KV~EFl~~-----------~~~L~EMGFp~~~VaeAL~~~dND~D 211 (222)
.-.+..||..+|++.+.|..+|+.+ | ||..-+..|+.. -..|+.-|+..+.|.+||..++.|..
T Consensus 34 ~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~de~ 113 (162)
T 3dfg_A 34 KKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHGLDSDAVSAAMATFEGDWT 113 (162)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHHHHHTTCCSCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcCCCHHHHHHHHHhCcHhHH
Confidence 4568899999999999999999843 4 355556666554 55789999999999999999887765
Q ss_pred HHHHHH
Q 046691 212 KALAHL 217 (222)
Q Consensus 212 KAL~~L 217 (222)
.++..|
T Consensus 114 e~a~~l 119 (162)
T 3dfg_A 114 ENALDL 119 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 86
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=93.13 E-value=0.18 Score=34.69 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=26.9
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVR 180 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~ 180 (222)
+-.+++|++|||+++.|.+||..=..|-+-+.
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~ 36 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAK 36 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHH
Confidence 55789999999999999999998777765544
No 87
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=90.82 E-value=0.21 Score=41.76 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=33.8
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 148 SDPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
++..|.+|++|||+|+.|-.|+..-+.|++.+.+||.
T Consensus 130 e~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 130 DDQAISRLCELGFERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3568999999999999999999999999999999875
No 88
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.79 E-value=0.31 Score=38.20 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=33.4
Q ss_pred cHHHHHHHHc-CCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 149 DPVVSRYIAL-GLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 149 DP~V~ky~am-G~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
|.-|.+|++| ||+++.|..||...+.|..++.+||.
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll 76 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 76 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678999999 99999999999999999999999875
No 89
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=90.25 E-value=0.55 Score=42.07 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=11.1
Q ss_pred HHHHHhcCCCCchHHHHHHhc
Q 046691 186 YTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~~ 206 (222)
+.-|+++||..+.|..+|..|
T Consensus 117 l~fL~~lGl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 117 SSYLQKLGLGEGKLKRVLYCC 137 (335)
T ss_dssp HHHHHHTTCTTTTHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHhC
Confidence 344455555555555555544
No 90
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=88.20 E-value=0.18 Score=35.42 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhc--CCCCchHHHHHHhccCCHHHHHHHHhccC
Q 046691 179 VREFANGYTILREM--GFSSNNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 179 V~EFl~~~~~L~EM--GFp~~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
-.|+-..+.+|++| .+..+.|..+|..++++.|+|++.||.=|
T Consensus 9 ~~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms 53 (54)
T 1p3q_Q 9 ENERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLS 53 (54)
T ss_dssp HHHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC------
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 46888999999999 34468899999999999999999999754
No 91
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=86.47 E-value=1.1 Score=37.22 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=9.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 046691 150 PVVSRYIALGLNREAVHIAVA 170 (222)
Q Consensus 150 P~V~ky~amG~~reaV~~Av~ 170 (222)
|.++-|.+.|++.+.+...+.
T Consensus 78 p~v~~L~~~Gls~~~i~~~l~ 98 (270)
T 3m66_A 78 TRVAYLHSKNFSKADVAQMVR 98 (270)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 334444444444444444443
No 92
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=86.20 E-value=1.5 Score=38.14 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=42.1
Q ss_pred cHHHHHHH-HcCCCHHHHHHHHHHcC-----CChhHHHHH-HHHHHHHHhcCCCCchHHHHHHhc
Q 046691 149 DPVVSRYI-ALGLNREAVHIAVANYG-----DNPTKVREF-ANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 149 DP~V~ky~-amG~~reaV~~Av~~yG-----dd~~KV~EF-l~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
++.|..|. .+|++.+.+..+|..++ .+.+.+++= ....+.|+++||+.++|..++..|
T Consensus 200 ~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~ 264 (343)
T 3mva_O 200 KANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSY 264 (343)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 56677777 59999999888887654 455555542 223345678999999999998765
No 93
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=86.15 E-value=0.88 Score=38.16 Aligned_cols=60 Identities=13% Similarity=0.251 Sum_probs=41.6
Q ss_pred cCCCHHHHHHHHHHcCCChhHHHHHHHH-----HHHHH----hc-----CCCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 158 LGLNREAVHIAVANYGDNPTKVREFANG-----YTILR----EM-----GFSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 158 mG~~reaV~~Av~~yGdd~~KV~EFl~~-----~~~L~----EM-----GFp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
.||..|.|..|+ .|+.+.. =.++|+. +.+.. .. .|+..++++||+.+.+|.++|...|+-
T Consensus 27 ~GfspEEV~aAl-~~~g~~~-P~~WLk~ewp~ll~~V~~la~~~~~~~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~ 100 (162)
T 4dbg_B 27 AGACPEEIFSAL-QYSGTEV-PLQWLRSELPYVLEMVAELAGQQDPGLGAFSCQEARRAWLDRHGNLDEAVEECVR 100 (162)
T ss_dssp SCCCHHHHHHHH-HHHTCCC-CHHHHHHHSCSHHHHHHHHHHHHCGGGCCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHccCChHHHHHHHHH
Confidence 499999999999 5643221 2333332 11111 12 367799999999999999999999873
No 94
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=85.47 E-value=1 Score=37.50 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 046691 150 PVVSRYIALGLNREAVHIAVAN 171 (222)
Q Consensus 150 P~V~ky~amG~~reaV~~Av~~ 171 (222)
++++.|..+|++...+......
T Consensus 7 ~~l~~L~~lGv~~~~i~k~p~~ 28 (270)
T 3m66_A 7 ETLQKLVLLGVDLSKIEKHPEA 28 (270)
T ss_dssp HHHHHHHHTTCCHHHHTTSHHH
T ss_pred HHHHHHHHcCCCHHHHhhccch
Confidence 3444455555555544444443
No 95
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=84.75 E-value=0.94 Score=32.34 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHhcc
Q 046691 179 VREFANGYTILREMGFSSNNVAEVLIMYE 207 (222)
Q Consensus 179 V~EFl~~~~~L~EMGFp~~~VaeAL~~~d 207 (222)
..+.+.....|+++||+.+.|++.|-..+
T Consensus 2 dl~rL~~I~~lr~lGfsL~eIk~~l~~~~ 30 (99)
T 1q08_A 2 DLQRLKFIRHARQLGFSLESIRELLSIRI 30 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Confidence 35678888999999999999999997664
No 96
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=84.66 E-value=1.9 Score=36.43 Aligned_cols=31 Identities=6% Similarity=0.287 Sum_probs=26.8
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHcCCChhH
Q 046691 148 SDPVVSRYIALGLNREAVHIAVANYGDNPTK 178 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~~yGdd~~K 178 (222)
.+..|.++++|||++++|-.|+...|-|...
T Consensus 169 ~~~~v~~~~~mg~~~~~~~~al~~~~~~~~~ 199 (215)
T 1tte_A 169 DHDLIDEFESQGFEKDKIVEVLRRLGVKSLD 199 (215)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHSCCSSCC
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHcCCCccc
Confidence 4669999999999999999999988876544
No 97
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=84.65 E-value=0.73 Score=40.12 Aligned_cols=53 Identities=15% Similarity=0.372 Sum_probs=30.6
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHH-cCC---ChhHHHHHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 148 SDPVVSRYIALGLNREAVHIAVAN-YGD---NPTKVREFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~~-yGd---d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
.|.+|..|..+|++.+.+..+-.. +-. +++.|.+| |+++||+...|+.++..|
T Consensus 19 ~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~f------L~~~G~s~~~i~~iv~~~ 75 (343)
T 3mva_O 19 NEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMF------LLSKGASKEVIASIISRY 75 (343)
T ss_dssp -CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHH------HHHTTCCHHHHHHHHHHC
T ss_pred cHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHH------HHHcCCCHHHHHHHHHhC
Confidence 466788888888887765443211 122 34444433 347777777777766554
No 98
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=84.49 E-value=2.6 Score=37.68 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=38.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGD-NPTKVREFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGd-d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
+.++++|.+|||+.+.|..+|..+-. -...+. ...+.|..+||+.+.|..+|..|
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~---~~i~~L~~LGls~e~V~kiL~k~ 102 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRGASLQQLL---DIISEFILLGLNPEPVCVVLKKS 102 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHH---HHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCcccchhHHH---HHHHHHHHcCCCHHHHHHHHHhC
Confidence 45788888888888888888875544 443333 33556666788888888887665
No 99
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=83.71 E-value=3.9 Score=32.21 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=47.5
Q ss_pred CcHHHHHHHHc-----C-----CCHHHHHHHHH-----HcCCChhHHHHHHHH-----------HHHHHhcCCCCchHHH
Q 046691 148 SDPVVSRYIAL-----G-----LNREAVHIAVA-----NYGDNPTKVREFANG-----------YTILREMGFSSNNVAE 201 (222)
Q Consensus 148 ~DP~V~ky~am-----G-----~~reaV~~Av~-----~yGdd~~KV~EFl~~-----------~~~L~EMGFp~~~Vae 201 (222)
.-.+..||..+ | ++.+.|..+|+ +|=||..=+..|+.. -..|+.-|+..+.|.+
T Consensus 22 ~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~G~~~I~~eL~~KGI~~~~i~~ 101 (159)
T 3c1d_A 22 EQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGISREATEK 101 (159)
T ss_dssp HHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCccHHHHHHHHHHcCCCHHHHHH
Confidence 34566777774 7 88888888887 334466666666654 4578888999999999
Q ss_pred HHHhccCCHHHHH
Q 046691 202 VLIMYENDTDKAL 214 (222)
Q Consensus 202 AL~~~dND~DKAL 214 (222)
||..++.|...++
T Consensus 102 al~~~~~d~~~~a 114 (159)
T 3c1d_A 102 AMREADIDWAALA 114 (159)
T ss_dssp HHHHHCCCHHHHH
T ss_pred HHHHcCHhHHHHH
Confidence 9998887755433
No 100
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=83.38 E-value=0.23 Score=42.15 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=0.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPTKVREFAN 184 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~ 184 (222)
|..|.++++|||+++.|-+|+...|-|.+++.|.|.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~ 213 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLL 213 (216)
T ss_dssp ------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHh
Confidence 789999999999999999999999999999988754
No 101
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=83.15 E-value=2.4 Score=35.35 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=48.4
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHH-----HcCCChhHHHHHHHH------------HHHHHhcCCCCchHHHHHHhccC
Q 046691 148 SDPVVSRYIALGLNREAVHIAVA-----NYGDNPTKVREFANG------------YTILREMGFSSNNVAEVLIMYEN 208 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~-----~yGdd~~KV~EFl~~------------~~~L~EMGFp~~~VaeAL~~~dN 208 (222)
.-.+..||..+|++.+.|..+|+ +|=||..=+..|+.. -..|+.-|++.+.|.+||..++.
T Consensus 78 ~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~ 155 (221)
T 3d5l_A 78 ESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQFTP 155 (221)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGCCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhCCH
Confidence 56788999999999999999887 344466666666654 45788899999999999998754
No 102
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=82.10 E-value=1 Score=31.72 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCH---HHHHHHHh
Q 046691 176 PTKVREFANGYTILREMGFSSNNVAEVLIMYENDT---DKALAHLL 218 (222)
Q Consensus 176 ~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~---DKAL~~LL 218 (222)
.+...|++..+.+.+++||+.++|.+-|..++-+. +.+..|-+
T Consensus 9 ~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~~~~~~~~~~rs~~~ 54 (57)
T 1b0n_B 9 FELDQEWVELMVEAKEANISPEEIRKYLLLNKKSAHPGPAARSHTV 54 (57)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC---------------
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcchHHHhcCC
Confidence 34568999999999999999999999999887665 35555543
No 103
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=78.14 E-value=2.1 Score=34.63 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=46.5
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHH-----HcCCChhHHHHHHHH------------HHHHHhcCCCCchHHHHHHhcc
Q 046691 148 SDPVVSRYIALGLNREAVHIAVA-----NYGDNPTKVREFANG------------YTILREMGFSSNNVAEVLIMYE 207 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~-----~yGdd~~KV~EFl~~------------~~~L~EMGFp~~~VaeAL~~~d 207 (222)
.-.+..||..+||+.+.|..+|+ +|=||..=+..|+.. -..|+.-|.+.+.|.+||...+
T Consensus 35 ~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~ 111 (177)
T 3e3v_A 35 RKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYT 111 (177)
T ss_dssp HHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 44677888899999999998887 344466666666654 5578899999999999998764
No 104
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=77.07 E-value=1.2 Score=33.67 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=30.2
Q ss_pred HHHHHHHh-cC--CCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 184 NGYTILRE-MG--FSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 184 ~~~~~L~E-MG--Fp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.++.++|+ +| -+.+.+-+|-++||-|.+|||+.+|+.
T Consensus 36 SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 36 SCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 34556655 34 788899999999999999999999965
No 105
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=76.50 E-value=2 Score=33.70 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHH
Q 046691 177 TKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHL 217 (222)
Q Consensus 177 ~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~L 217 (222)
....+.+.....|+++||+.+.|++.|...+.+.+.+++.|
T Consensus 45 ~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~~~~~~~~~~L 85 (146)
T 3hh0_A 45 KDDLYVLQQIQSFKHLGFSLGEIQNIILQRDIETEVFLRQM 85 (146)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 44556677788889999999999999988777777665543
No 106
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=71.31 E-value=3.2 Score=30.45 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=20.8
Q ss_pred CchHHHHHHhccCCHHHHHHHHhccC
Q 046691 196 SNNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 196 ~~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
..-|..+|..||||.|+++.+||..+
T Consensus 29 ~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 29 EGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 44578888888999999999988653
No 107
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=71.19 E-value=6 Score=29.01 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCCHH-HHHHHHHHcCC---ChhHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHH
Q 046691 150 PVVSRYIALGLNRE-AVHIAVANYGD---NPTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALA 215 (222)
Q Consensus 150 P~V~ky~amG~~re-aV~~Av~~yGd---d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~ 215 (222)
.++..|.+.|+=.. +.. .-|. ++ ...+-+.....|+++||+.+.|++.|...+.+..+.|+
T Consensus 17 ~tLR~ye~~Gll~p~~~~----~~g~R~Y~~-~dl~~l~~I~~l~~~G~~l~~I~~~l~~~~~~~~~~l~ 81 (109)
T 1r8d_A 17 RTLHHYDNIELLNPSALT----DAGYRLYSD-ADLERLQQILFFKEIGFRLDEIKEMLDHPNFDRKAALQ 81 (109)
T ss_dssp HHHHHHHHTTSSCCSEEC----TTCCEEBCH-HHHHHHHHHHHHHHTTCCHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHCCCCCCCeEC----CCCCeeeCH-HHHHHHHHHHHHHHCCCCHHHHHHHHhCCCHHHHHHHH
Confidence 46777777776321 100 1122 33 33445566777899999999999988765545544443
No 108
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=70.78 E-value=2.5 Score=41.90 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=30.8
Q ss_pred HHHHHHhcCCCCchHHHHHHhccC-CHHHHHHHHhcc
Q 046691 185 GYTILREMGFSSNNVAEVLIMYEN-DTDKALAHLLGS 220 (222)
Q Consensus 185 ~~~~L~EMGFp~~~VaeAL~~~dN-D~DKAL~~LLs~ 220 (222)
.+.+|.+|||+.+....||...+| |.|.|+..|++.
T Consensus 655 ~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~h 691 (854)
T 3ihp_A 655 VIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 691 (854)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhc
Confidence 478999999999999999998866 599998887653
No 109
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=67.27 E-value=7.2 Score=33.11 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHH
Q 046691 177 TKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAH 216 (222)
Q Consensus 177 ~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~ 216 (222)
....+-|.....|+++||+.+.|++.|-..+.|...+|+.
T Consensus 44 ~~dl~~L~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~L~~ 83 (249)
T 3qao_A 44 EKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDM 83 (249)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHhccCchHHHHHHHH
Confidence 4556677778889999999999999998766676666553
No 110
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=62.79 E-value=9.9 Score=29.15 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCchHHHHHHhccC
Q 046691 150 PVVSRYIALGLNREAVHIAVANYGD--NPTKVREFANGYTILREMGFSSNNVAEVLIMYEN 208 (222)
Q Consensus 150 P~V~ky~amG~~reaV~~Av~~yGd--d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dN 208 (222)
.+++.|-+.|+=.... +- .-|. =.....+-+.....|+++||+.+.|++.|...++
T Consensus 15 ~tLR~ye~~Gll~p~~-r~--~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~ 72 (135)
T 1q06_A 15 KAIRFYEEKGLVTPPM-RS--ENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNLFND 72 (135)
T ss_dssp HHHHHHHHTTCSCCCE-EC--TTSCEECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCc-cC--CCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhhc
Confidence 4667777777621100 00 1122 2234455666777789999999999999876543
No 111
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=60.27 E-value=5.4 Score=29.31 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCCHH-HHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 150 PVVSRYIALGLNRE-AVHIAVANYGD--NPTKVREFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 150 P~V~ky~amG~~re-aV~~Av~~yGd--d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
.++..|.+.|+=.. ... .-|. =.....+-+.....|+++||+.+.|++.|...
T Consensus 16 ~tLR~ye~~Gll~p~~r~----~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~ 71 (108)
T 2vz4_A 16 RTLHHYDDIGLLVPSERS----HAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDDP 71 (108)
T ss_dssp HHHHHHHHHTSSCCSEEC----SSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC-
T ss_pred HHHHHHHHCCCCCCCccC----CCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCC
Confidence 46667777776221 100 0122 12344556677788899999999999988643
No 112
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=60.14 E-value=18 Score=30.44 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=42.1
Q ss_pred cHHHHHHHHcCCCH--HHHHHHHHHcCCChhHHHHHHHHHHHHHhc-CCCCchHHHHHHhccCC---HHHHHHHH
Q 046691 149 DPVVSRYIALGLNR--EAVHIAVANYGDNPTKVREFANGYTILREM-GFSSNNVAEVLIMYEND---TDKALAHL 217 (222)
Q Consensus 149 DP~V~ky~amG~~r--eaV~~Av~~yGdd~~KV~EFl~~~~~L~EM-GFp~~~VaeAL~~~dND---~DKAL~~L 217 (222)
-.+++.|-+.|+=. .+-.-+-..|. ..-.+-+.....|+++ ||+.+.|++.|..++++ .+..++.+
T Consensus 14 ~~TLRyYE~~GLl~p~~R~~~gyR~Y~---~~dl~~L~~I~~lr~~~G~sL~eIk~~l~~~~~~~~~~~~~l~~~ 85 (222)
T 2dg6_A 14 TATIKYYLREGLLPPGRQVNATTAEYD---EDHLRRLRLVRALIQVGKVPVATAREVLGHVDDDSLGRTVRLGAA 85 (222)
T ss_dssp HHHHHHHHHHTSSCCC---------CC---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCeeCCCCceeeC---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcCCCCHHHHHHHH
Confidence 35788888888722 33333344443 3456667788889999 99999999999987653 45666554
No 113
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=57.98 E-value=11 Score=29.50 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=34.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGD--NPTKVREFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGd--d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
-.+++.|-+.|+=... .+. .-|. =.....+.+.....|+++||+.+.|++.|..+
T Consensus 30 ~~tLR~Ye~~Gll~p~-~r~--~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 30 ISQIRYYDKQGLFPFL-QRN--EKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWS 86 (148)
T ss_dssp HHHHHHHHHTTCCTTC-EEC--TTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCC-cCC--CCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 3466666666664211 000 1122 22445566777888899999999999999865
No 114
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=57.91 E-value=11 Score=29.27 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCchHHHHHHhcc
Q 046691 177 TKVREFANGYTILREMGFSSNNVAEVLIMYE 207 (222)
Q Consensus 177 ~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~d 207 (222)
....+.+.....|+++||+.+.|++.|..++
T Consensus 43 ~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~ 73 (142)
T 3gp4_A 43 AEDLRWILFTRQMRRAGLSIEALIDYLALFR 73 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4455667777888999999999999887653
No 115
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=55.47 E-value=20 Score=24.60 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=25.9
Q ss_pred HcCCCHHHHHHHHHHcC---C-ChhHHHHHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 157 ALGLNREAVHIAVANYG---D-NPTKVREFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 157 amG~~reaV~~Av~~yG---d-d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
..|+++..|.++|..-+ . +++... .-...+++|||.++.++..|..-
T Consensus 9 ~aGVS~sTVSrvLng~~~~~~vs~et~~---rI~~aa~~lgY~pn~~a~~l~~~ 59 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKAKQYRVSDKTVE---KVMAVVREHNYHPNAVAAGLRLQ 59 (65)
T ss_dssp HHTSCHHHHHHHHHTCTTTTTCTTHHHH---HHHHHHHHHTCCCC---------
T ss_pred HHCcCHHHHHHHHcCCCCCCCCCHHHHH---HHHHHHHHhCCCccHHHHHHHHh
Confidence 56999999999998554 2 332221 12334588999999999988753
No 116
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=55.19 E-value=20 Score=28.32 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=38.8
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCCChh-HH----------------HHHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGDNPT-KV----------------REFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGdd~~-KV----------------~EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
-.+..+|..+|++.+.+..||+.+-.++. .+ .+.-+.+.-|.--||+.+.|..||-..
T Consensus 85 ~~I~~eL~~KGI~~~~I~~al~~~~~de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~~~ 159 (162)
T 3dfg_A 85 LHIRAELGTHGLDSDAVSAAMATFEGDWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRGFDGNSIRLATRFD 159 (162)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTTCCSCHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHhcC
Confidence 46788999999999999988887643321 11 122334556777788888888776543
No 117
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=53.15 E-value=16 Score=22.89 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 176 PTKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 176 ~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.++|.+|+ .+. |-..+....-|-.|+.|.+.||..+...
T Consensus 6 ~~~i~~F~----~iT--g~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 6 QDALREFV----AVT--GAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHH----HHT--CCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHH----HHh--CcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 34566665 333 5567777778888999999999987643
No 118
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.74 E-value=18 Score=24.84 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 193 GFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 193 GFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
|=..+.....|-+|+.|.+.||..+...
T Consensus 27 g~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 27 GASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp CCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3345566666788999999999988643
No 119
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=51.18 E-value=8.7 Score=29.41 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=20.2
Q ss_pred cCCCCchHHHHHHhccCCHHHHHHHH
Q 046691 192 MGFSSNNVAEVLIMYENDTDKALAHL 217 (222)
Q Consensus 192 MGFp~~~VaeAL~~~dND~DKAL~~L 217 (222)
.|-+...+.+||-.||||.=.||-.|
T Consensus 76 ~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 76 TGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred hCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 45555566789999999999998765
No 120
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=49.74 E-value=28 Score=26.27 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=30.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHH----cCCChhHHHHHHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVAN----YGDNPTKVREFANGYTIL 189 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~----yGdd~~KV~EFl~~~~~L 189 (222)
-|+|...++|||++..|..+|.. -|.+-+-+.+.+..+-.-
T Consensus 28 s~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 28 NPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp CTHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 46899999999999999998874 466655566666554443
No 121
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=47.63 E-value=12 Score=25.89 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=33.7
Q ss_pred cHHHHHHHHc-CCCHHHHHHHHHHcCC---ChhHHHHHHHHHHHHH-hcCCCCchHHHHHHhcc
Q 046691 149 DPVVSRYIAL-GLNREAVHIAVANYGD---NPTKVREFANGYTILR-EMGFSSNNVAEVLIMYE 207 (222)
Q Consensus 149 DP~V~ky~am-G~~reaV~~Av~~yGd---d~~KV~EFl~~~~~L~-EMGFp~~~VaeAL~~~d 207 (222)
-.+++.|.+. |+..-. +- ..-|. +.+ ..+-+.....|+ ++||+.+.|++.|...+
T Consensus 19 ~~tlR~ye~~~gl~~p~--r~-~~~g~R~Y~~~-dl~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 19 EATLRAWERRYGFPRPL--RS-EGNNYRVYSRE-EVEAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHTCCSCCB--SS-SCSSSCEECHH-HHHHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCc--CC-CCCCeeecCHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 3466777764 664221 10 00121 333 344566778888 99999999999987654
No 122
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=46.75 E-value=18 Score=28.65 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=26.4
Q ss_pred HhcCCCCchHHHHHHhccCCHHHHHHHHhccC
Q 046691 190 REMGFSSNNVAEVLIMYENDTDKALAHLLGSS 221 (222)
Q Consensus 190 ~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~s 221 (222)
.|..-..-.|-.||++..+|+++|...|++..
T Consensus 22 eef~~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 22 EKFNLDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHhhhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 34455666889999999999999999999874
No 123
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=46.29 E-value=19 Score=28.93 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=41.3
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCC-Ch---------hHHH---------HHHHHHHHHHhcCCCCchHHHHHHhccCC
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGD-NP---------TKVR---------EFANGYTILREMGFSSNNVAEVLIMYEND 209 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGd-d~---------~KV~---------EFl~~~~~L~EMGFp~~~VaeAL~~~dND 209 (222)
--+..+|..+|++.+.+..||+.+-. ++ +|.. ..-+.+.-|.--||+.+.|..||-..+.+
T Consensus 87 ~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~ 166 (177)
T 3e3v_A 87 KVIKLNLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLI 166 (177)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCC
Confidence 34677888899999988888876632 11 1111 11233566788899999999998765544
Q ss_pred HH
Q 046691 210 TD 211 (222)
Q Consensus 210 ~D 211 (222)
.|
T Consensus 167 ~~ 168 (177)
T 3e3v_A 167 FD 168 (177)
T ss_dssp --
T ss_pred CC
Confidence 43
No 124
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=41.63 E-value=5.5 Score=38.01 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred CCCchHHHHHHhccCCHHHHHHHHhc
Q 046691 194 FSSNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 194 Fp~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
|..+.+-..|..|+.|.++||..|..
T Consensus 159 ~n~EqAL~~L~~~~yDi~~AL~~L~~ 184 (482)
T 2xag_B 159 YNMEQALGMLFWHKHNIEKSLADLPN 184 (482)
T ss_dssp --------------------------
T ss_pred ccHHHHHHHHHHccCCHHHHHHHHhc
Confidence 33344555678888888888887753
No 125
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.00 E-value=49 Score=23.16 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 177 TKVREFANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 177 ~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
++|.+|+. +. |=..+.....|-.++.|+|.||+.+...
T Consensus 19 ~~i~qF~~----iT--g~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVL----AA--GCAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHH----HH--CCCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHH----Hc--CCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45666653 32 4456666677888999999999988654
No 126
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=40.56 E-value=32 Score=26.78 Aligned_cols=42 Identities=17% Similarity=0.083 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHh--------cCCCCch---HHHHHHhc
Q 046691 164 AVHIAVANYGDNPTKVREFANGYTILRE--------MGFSSNN---VAEVLIMY 206 (222)
Q Consensus 164 aV~~Av~~yGdd~~KV~EFl~~~~~L~E--------MGFp~~~---VaeAL~~~ 206 (222)
.+..+|.++ ||++++.++|..+-+.+- .||..+. +.+||+.|
T Consensus 67 ~l~~~V~~L-dd~~~l~~~L~~LG~~H~~~~~~~~~~Gv~~~~f~~~g~all~~ 119 (161)
T 3mvc_A 67 LMDDLIANL-DSPSATVAGLREAGEKHVWPTRNQYGCPFHAHLLDQFATAMIER 119 (161)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHHHTTCCSSTTTTSSCCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHH
Confidence 356677777 578899999999999887 3898864 77888864
No 127
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=39.51 E-value=32 Score=23.80 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=12.5
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHH
Q 046691 149 DPVVSRYIALGLNREAVHIAVAN 171 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~ 171 (222)
+.++.-|++.||++..+..||..
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 33555555555555555555543
No 128
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=39.28 E-value=72 Score=28.41 Aligned_cols=68 Identities=16% Similarity=-0.038 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCChhHHHHH---------HHHHHHHHhcCCCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 151 VVSRYIALGLNREAVHIAVANYGDNPTKVREF---------ANGYTILREMGFSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 151 ~V~ky~amG~~reaV~~Av~~yGdd~~KV~EF---------l~~~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.+.++.-...+.+.+.+|..+-|+ -.++... +..+.++.+. =...++|+.++..-||.|+|++.|+..
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~~d-~~~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNAHD-LESLFLLHSSFNNKEGLVTLAKDAET-TGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTC-HHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHccC-hhhhHHHHHHcCCHHHHHHHHHHHHH-cCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555556677777777776665 1222111 1111111111 123466777788889999999998753
No 129
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=38.86 E-value=19 Score=29.39 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 180 REFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 180 ~EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
.+-+.....|+++||+.+.|++.|...
T Consensus 50 ~~~l~~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 50 LIHLDLIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp GGHHHHHHHHHHTTCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhC
Confidence 344555667788888888888877543
No 130
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=37.03 E-value=49 Score=26.87 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=34.6
Q ss_pred HcCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCchHHHHHHh
Q 046691 157 ALGLNREAVHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIM 205 (222)
Q Consensus 157 amG~~reaV~~Av~~yGdd~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~ 205 (222)
.-|.++.-|.++|.+.+.=.++.+|= =+...+||||.++..+.+|..
T Consensus 11 ~agVS~~TVSrvln~~~~vs~~tr~r--V~~aa~~lgY~pn~~ar~l~~ 57 (332)
T 2hsg_A 11 EASVSMATVSRVVNGNPNVKPSTRKK--VLETIERLGYRPNAVARGLAS 57 (332)
T ss_dssp HTTSCHHHHHHHHTTCTTSCHHHHHH--HHHHHHHHTCCSCHHHHHHTT
T ss_pred HhCCCHHHHHHHHcCCCCCCHHHHHH--HHHHHHHHCCCcCHHHHHHHh
Confidence 46999999999999877622222322 245678999999999998864
No 131
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=36.43 E-value=33 Score=24.15 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=19.1
Q ss_pred CchHHHHHHhccCCHHHHHHHH
Q 046691 196 SNNVAEVLIMYENDTDKALAHL 217 (222)
Q Consensus 196 ~~~VaeAL~~~dND~DKAL~~L 217 (222)
-..+.+|..+|+-|.|+-|+.|
T Consensus 40 ~~tL~~Aa~~~gid~~~ll~~L 61 (73)
T 2k5e_A 40 NESLEQGANAHGLNVEDILRDL 61 (73)
T ss_dssp GSBHHHHHHHTTCCHHHHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHH
Confidence 5789999999999999877766
No 132
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.37 E-value=15 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.3
Q ss_pred CCchHHHHHHhccCCHHHHHHHHh
Q 046691 195 SSNNVAEVLIMYENDTDKALAHLL 218 (222)
Q Consensus 195 p~~~VaeAL~~~dND~DKAL~~LL 218 (222)
|.+.|++.+++++|++|+.++.|=
T Consensus 25 Pd~VVsqc~~qN~~Nl~aC~~~L~ 48 (75)
T 2dae_A 25 PEVVVSRCMLQNNNNLDACCAVLS 48 (75)
T ss_dssp CHHHHHHHHTTTTSCSHHHHHHHH
T ss_pred cHHHHHHHHHHhccCHHHHHHHHH
Confidence 457899999999999999999874
No 133
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=35.21 E-value=44 Score=23.62 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=32.3
Q ss_pred hhHHHHHHHH----HHHHHhcCCCC-------------chHHHHHHhccCCHHHHHHHH
Q 046691 176 PTKVREFANG----YTILREMGFSS-------------NNVAEVLIMYENDTDKALAHL 217 (222)
Q Consensus 176 ~~KV~EFl~~----~~~L~EMGFp~-------------~~VaeAL~~~dND~DKAL~~L 217 (222)
.++|.|-+.. ...|++.||.. ..+++|..+|+-|.|+-++.|
T Consensus 12 d~~I~elv~~~P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L 70 (81)
T 2fi0_A 12 SIPVAEVVDKHPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTL 70 (81)
T ss_dssp TSBHHHHHHHCGGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHCHHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHH
Confidence 4556666655 46778888763 678899999999999988876
No 134
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=35.01 E-value=75 Score=25.94 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=34.1
Q ss_pred HcCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCchHHHHHHh
Q 046691 157 ALGLNREAVHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIM 205 (222)
Q Consensus 157 amG~~reaV~~Av~~yGdd~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~ 205 (222)
.-|.++.-|.++|.+-+.=-++.+|=+ +...+||||.++.++.+|..
T Consensus 9 ~agVS~~TVSrvLn~~~~vs~~tr~rV--~~~a~~lgY~pn~~ar~l~~ 55 (340)
T 1qpz_A 9 RANVSTTTVSHVINKTRFVAEETRNAV--WAAIKELHYSPSAVARSLKV 55 (340)
T ss_dssp HHTSCHHHHHHHHHTCSCCCHHHHHHH--HHHHHHHTCCCCHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCcCCCCHHHHHHH--HHHHHHhCCCCCHHHHhhcc
Confidence 469999999999997776222222222 35678999999999998865
No 135
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=33.92 E-value=32 Score=27.04 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCCH-HHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 150 PVVSRYIALGLNR-EAVHIAVANYGDNPTKVREFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 150 P~V~ky~amG~~r-eaV~~Av~~yGdd~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
.+++.|-+.|+=. .+..-+-..| ++ ...+-+.....|+++||+.+.|++.|-..
T Consensus 26 ~TLR~ye~~Gll~p~r~~~g~R~Y--~~-~dl~~l~~I~~lr~~G~sl~eI~~~l~~~ 80 (154)
T 2zhg_A 26 SALHFYESKGLITSIRNSGNQRRY--KR-DVLRYVAIIKIAQRIGIPLATIGEAFGVL 80 (154)
T ss_dssp HHHHHHHHTTSSCCEECTTSCEEB--CT-THHHHHHHHHHHHHHTCCHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCcccCCCCCEEe--CH-HHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 4677777777632 1111111112 22 33455666777889999999999988653
No 136
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=33.52 E-value=33 Score=23.57 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=25.1
Q ss_pred HcCCCHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHhcCCCCchHHHHHHh
Q 046691 157 ALGLNREAVHIAVANYGD-NPTKVREFANGYTILREMGFSSNNVAEVLIM 205 (222)
Q Consensus 157 amG~~reaV~~Av~~yGd-d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~ 205 (222)
..|+++..|.++|.+-+. .++ ..+ .-+..+++|||..+.++..|..
T Consensus 18 ~aGVS~sTVSr~ln~~~~vs~~-t~~--rV~~~a~~lgY~pn~~a~~l~~ 64 (67)
T 2l8n_A 18 KAKVSTATVSRALMNPDKVSQA-TRN--RVEKAAREVGYLPQPMGRNVKR 64 (67)
T ss_dssp HTTCCHHHHHHTTTCCCCSCHH-HHH--HHHHHHHHHCCCC---------
T ss_pred HHCCCHHHHHHHHcCCCCCCHH-HHH--HHHHHHHHhCCCccHHHHHhhc
Confidence 459999999999875443 222 222 2245678999999999888753
No 137
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.69 E-value=59 Score=22.69 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=19.4
Q ss_pred CchHHHHHHhccCCHHHHHHHHhcc
Q 046691 196 SNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 196 ~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
.+.+...|-.||.|.|.||..+...
T Consensus 34 ~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 34 MDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4455667888999999999988753
No 138
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=32.41 E-value=1.2e+02 Score=22.93 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=5.7
Q ss_pred cCCHHHHHHHH
Q 046691 207 ENDTDKALAHL 217 (222)
Q Consensus 207 dND~DKAL~~L 217 (222)
..|.++|++.+
T Consensus 102 ~~d~~~A~~~~ 112 (212)
T 3rjv_A 102 ATDVAHAITLL 112 (212)
T ss_dssp SCCHHHHHHHH
T ss_pred ccCHHHHHHHH
Confidence 34555555544
No 139
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=31.46 E-value=48 Score=26.06 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=27.5
Q ss_pred cCCCHHHHHHHHHHcCC-----ChhHHHHHHHH------------HHHHHhcCCCCchHHHHHHh
Q 046691 158 LGLNREAVHIAVANYGD-----NPTKVREFANG------------YTILREMGFSSNNVAEVLIM 205 (222)
Q Consensus 158 mG~~reaV~~Av~~yGd-----d~~KV~EFl~~------------~~~L~EMGFp~~~VaeAL~~ 205 (222)
.|.+.+.+......|.. .+.-+.+|+.. +..|++.||....|.|+++.
T Consensus 105 ~G~~~~~i~~l~~~~~~~~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~el~~~ 169 (196)
T 2oyo_A 105 FLGDPQKADAVAVNWRHADLTEREQALAAYAEKLTRHPAEVTAADLEPLRAVGLDDHQIMELVQV 169 (196)
T ss_dssp HHTCHHHHHHHHHCGGGSCCCHHHHHHHHHHHHHHHCGGGCCGGGGHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46666555433333332 34556667655 45567777777777776653
No 140
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.18 E-value=37 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=19.7
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCC
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGD 174 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGd 174 (222)
--+..+|..+|++.+.+..||+.+-.
T Consensus 83 ~~I~~eL~~KGI~~~~i~~al~~~~~ 108 (159)
T 3c1d_A 83 ARIRQELNQKGISREATEKAMREADI 108 (159)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCH
Confidence 34677888889998888888876543
No 141
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=30.75 E-value=60 Score=25.15 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=25.5
Q ss_pred HcCCCHHHHHHHHHHcCC-----ChhHHHHHHHH------------HHHHHhcCCCCchHHHHHHh
Q 046691 157 ALGLNREAVHIAVANYGD-----NPTKVREFANG------------YTILREMGFSSNNVAEVLIM 205 (222)
Q Consensus 157 amG~~reaV~~Av~~yGd-----d~~KV~EFl~~------------~~~L~EMGFp~~~VaeAL~~ 205 (222)
..|.+.+.+......|.. .+.-+.+|+.. +..|++.||....|.|+++.
T Consensus 96 ~~G~~~~~i~~l~~~~~~~~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~el~~~ 161 (188)
T 3c1l_A 96 QLSGDPALGEMLVMNFRAADLSPRQTAMLEFAVKLTEEPAKIVEADRAALRKAGFSDRDIWDIAST 161 (188)
T ss_dssp HHHSCHHHHHHHHHCGGGGCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 346665554332222221 34455566655 55566666666666665543
No 142
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=30.57 E-value=60 Score=25.30 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=26.1
Q ss_pred HcCCCHHHHHHHHHHcCC-----ChhHHHHHHHH------------HHHHHhcCCCCchHHHHHHh
Q 046691 157 ALGLNREAVHIAVANYGD-----NPTKVREFANG------------YTILREMGFSSNNVAEVLIM 205 (222)
Q Consensus 157 amG~~reaV~~Av~~yGd-----d~~KV~EFl~~------------~~~L~EMGFp~~~VaeAL~~ 205 (222)
..|.+.+.+......|.. .+.-+.+|+.. +..|++.||....|.|+++.
T Consensus 99 ~~G~~~~~i~~l~~~~~~~~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~el~~~ 164 (191)
T 2pfx_A 99 QLSGDPQLGEMLVMNYRVAPLDARQRVMLDFAAKMTRASAEIEEADREVLRSHGFNDRDIWDIANV 164 (191)
T ss_dssp HHHTCHHHHHHHHHCGGGSCCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 346666655433323332 34456677665 44555666666666665543
No 143
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=29.81 E-value=81 Score=28.52 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=7.8
Q ss_pred HHHHHHHcCCCHHHHHH
Q 046691 151 VVSRYIALGLNREAVHI 167 (222)
Q Consensus 151 ~V~ky~amG~~reaV~~ 167 (222)
+..+..+.|+.++.+..
T Consensus 92 lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHhCCCCCHHHH
Confidence 33444455555544443
No 144
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=29.20 E-value=74 Score=20.95 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHcCCChhHHHHHH-----HHHHHHHhcCCCC
Q 046691 160 LNREAVHIAVANYGDNPTKVREFA-----NGYTILREMGFSS 196 (222)
Q Consensus 160 ~~reaV~~Av~~yGdd~~KV~EFl-----~~~~~L~EMGFp~ 196 (222)
+.++.+..|++..|.|.+++.+.| ..+.+|+..|...
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhCCCC
Confidence 457778888888888888888875 3477777777643
No 145
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=28.39 E-value=1.4e+02 Score=24.75 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=45.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHc----CC-ChhHHHHHHHHHHHHHhcCCCCc------hHHHHHHhccC--------CHH
Q 046691 151 VVSRYIALGLNREAVHIAVANY----GD-NPTKVREFANGYTILREMGFSSN------NVAEVLIMYEN--------DTD 211 (222)
Q Consensus 151 ~V~ky~amG~~reaV~~Av~~y----Gd-d~~KV~EFl~~~~~L~EMGFp~~------~VaeAL~~~dN--------D~D 211 (222)
+|.-++..-.+-.+|..++.++ |. +++.+.+ .....|+..||... .++++++.... +.+
T Consensus 65 Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~--~~~e~Lr~~G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~ 142 (225)
T 2yg9_A 65 LVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLK--VSGDDLRGVGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDE 142 (225)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTT--SCHHHHHHTTCCHHHHHHHHHHHHHHHTTSSCGGGCTTSCHH
T ss_pred HHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHc--CCHHHHHHCCCcHHHHHHHHHHHHHHHhCCcCHHHHhcCCHH
Confidence 7888888889988888877644 64 5555542 12456799999753 45566655333 667
Q ss_pred HHHHHHhc
Q 046691 212 KALAHLLG 219 (222)
Q Consensus 212 KAL~~LLs 219 (222)
.+++.|++
T Consensus 143 e~~~~L~~ 150 (225)
T 2yg9_A 143 LVIAELVQ 150 (225)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 78888875
No 146
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=27.71 E-value=49 Score=27.48 Aligned_cols=35 Identities=9% Similarity=0.283 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCchHHHHHHhc---cCCHHHHHHHHh
Q 046691 184 NGYTILREMGFSSNNVAEVLIMY---ENDTDKALAHLL 218 (222)
Q Consensus 184 ~~~~~L~EMGFp~~~VaeAL~~~---dND~DKAL~~LL 218 (222)
.....|..+||....+..|+... +.|.|..|...|
T Consensus 162 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~lir~AL 199 (203)
T 1cuk_A 162 EAVARLVALGYKPQEASRMVSKIARPDASSETLIREAL 199 (203)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 47888999999999999999887 456776665544
No 147
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.59 E-value=13 Score=30.22 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=29.1
Q ss_pred HHHHHHhc-CCC-CchHHHHHHhccCCHHHHHHHHhc
Q 046691 185 GYTILREM-GFS-SNNVAEVLIMYENDTDKALAHLLG 219 (222)
Q Consensus 185 ~~~~L~EM-GFp-~~~VaeAL~~~dND~DKAL~~LLs 219 (222)
.++||||. |-. ..-+-+||-.+|+|..+|+..|-.
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 57788875 666 677889999999999999998754
No 148
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=26.56 E-value=89 Score=27.86 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=31.1
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHH----HcCCChhHHHHHHHHH
Q 046691 148 SDPVVSRYIALGLNREAVHIAVA----NYGDNPTKVREFANGY 186 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~----~yGdd~~KV~EFl~~~ 186 (222)
.-|+|..-++|||++..|..+|+ .-|.+-+.+.+.+..+
T Consensus 119 ~~~~v~~~l~mGf~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~ 161 (345)
T 3t6p_A 119 NTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSAL 161 (345)
T ss_dssp CSHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCSHHHHHHHH
T ss_pred cCHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcCCHHHHHHHH
Confidence 46899999999999999999887 5677666666666654
No 149
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=25.95 E-value=68 Score=25.16 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=12.0
Q ss_pred HHHHHhcCCCCchHHHHHHh
Q 046691 186 YTILREMGFSSNNVAEVLIM 205 (222)
Q Consensus 186 ~~~L~EMGFp~~~VaeAL~~ 205 (222)
+..|++.||....|.|+++.
T Consensus 146 ~~~l~~~G~s~~ei~el~~~ 165 (197)
T 2prr_A 146 FEALREHGFTDEDAWDIAAI 165 (197)
T ss_dssp HHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 44556666666666665543
No 150
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=25.21 E-value=18 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHcCCCHHHHHHHHHHc---------------CC-ChhHHHHHHHHHHHHHh
Q 046691 155 YIALGLNREAVHIAVANY---------------GD-NPTKVREFANGYTILRE 191 (222)
Q Consensus 155 y~amG~~reaV~~Av~~y---------------Gd-d~~KV~EFl~~~~~L~E 191 (222)
+++.|++.+-|..|+ .+ |. |.+|+.+|+.....+++
T Consensus 150 ~LAGGL~peNV~~ai-~~~p~gVDvsSGvE~~pG~KD~~ki~~fi~~~r~~~~ 201 (203)
T 1v5x_A 150 ILAGGIAPENLEEVL-ALRPYALDLASGVEEAPGVKSAEKLRALFARLASLRM 201 (203)
T ss_dssp EECSSCCSTTHHHHH-HHCCSEEEESGGGEEETTEECHHHHHHHHHHHHHTC-
T ss_pred EEECCCCHHHHHHHH-hcCCCEEEeCCceecCCCCcCHHHHHHHHHHHHHhhh
Confidence 458899999998888 42 22 89999999988776543
No 151
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=25.04 E-value=33 Score=30.74 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=24.0
Q ss_pred HcCC-ChhHHHHHHHHHHHHHhcCCCCchHHHHHHhcc
Q 046691 171 NYGD-NPTKVREFANGYTILREMGFSSNNVAEVLIMYE 207 (222)
Q Consensus 171 ~yGd-d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~d 207 (222)
.||. |.+++++||. .|.||.++.|.++|..-.
T Consensus 309 ~w~~pd~~~l~~fl~-----~~~~f~~~rv~~~~~~l~ 341 (363)
T 3ory_A 309 EWHTPDPDAVKRILV-----DEHDFSIDRVSTALERYV 341 (363)
T ss_dssp CCCCCCHHHHHHHHT-----TTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-----hccCCCHHHHHHHHHHHH
Confidence 3666 7777888765 588999999988887543
No 152
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.16 E-value=1e+02 Score=25.37 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=38.4
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHcCC-Chh-HHH-----------------HHHHHHHHHHhcCCCCchHHHHHHhc
Q 046691 149 DPVVSRYIALGLNREAVHIAVANYGD-NPT-KVR-----------------EFANGYTILREMGFSSNNVAEVLIMY 206 (222)
Q Consensus 149 DP~V~ky~amG~~reaV~~Av~~yGd-d~~-KV~-----------------EFl~~~~~L~EMGFp~~~VaeAL~~~ 206 (222)
--+..+|..+|++.+.+..||+.+-. ++. .+. +.-+.+.-|.--||+.+.|..+|-..
T Consensus 130 ~~I~~eL~~KGI~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 130 GIIRQHLRQKGIGESDIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHHHHHHTTCCHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 34677888999999999888876621 111 111 12334566777899999998888655
No 153
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=23.73 E-value=22 Score=29.98 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=27.5
Q ss_pred HHHcCCCHHHHHHHHHHcC--------------C-ChhHHHHHHHHHHH
Q 046691 155 YIALGLNREAVHIAVANYG--------------D-NPTKVREFANGYTI 188 (222)
Q Consensus 155 y~amG~~reaV~~Av~~yG--------------d-d~~KV~EFl~~~~~ 188 (222)
+++-|++.+-|..||+.++ - |.+|+.+|++....
T Consensus 177 iLAGGL~peNV~~Ai~~~~P~gVDVsSGVEs~G~KD~~KI~~Fi~~vr~ 225 (228)
T 4aaj_A 177 IVAGGLNAENVEEVIKVVKPYGVDVSSGVEKYGIKDPKLVEEFVRRAKN 225 (228)
T ss_dssp EEESSCCTTTHHHHHHHHCCSEEEESGGGEETTEECHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHhCCCEEEeCCCCCCCCCcCHHHHHHHHHHHhc
Confidence 4589999999999998643 2 89999999886543
No 154
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=23.40 E-value=67 Score=27.10 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCCchHHHHHHhc-----cCCHHHHHHHHh
Q 046691 184 NGYTILREMGFSSNNVAEVLIMY-----ENDTDKALAHLL 218 (222)
Q Consensus 184 ~~~~~L~EMGFp~~~VaeAL~~~-----dND~DKAL~~LL 218 (222)
..+..|..+||....+..|+... +.|.|..|...|
T Consensus 166 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~AL 205 (212)
T 2ztd_A 166 PVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSAL 205 (212)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 46788889999999999888765 345665554433
No 155
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=22.97 E-value=72 Score=21.94 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=12.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHH
Q 046691 164 AVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 164 aV~~Av~~yGdd~~KV~EFl~~ 185 (222)
.|..||.++|.+++.+..-+..
T Consensus 19 ea~~AL~aLGY~~~ea~kav~~ 40 (62)
T 1ixs_A 19 EAVMALAALGFKEAQARAVVLD 40 (62)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 3556666666665555554444
No 156
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=22.67 E-value=1.1e+02 Score=24.35 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCChhHHHHHHHH-----HHHHHhcCCCCchHHHHHHhccCCHHHHHHHH
Q 046691 164 AVHIAVANYGDNPTKVREFANG-----YTILREMGFSSNNVAEVLIMYENDTDKALAHL 217 (222)
Q Consensus 164 aV~~Av~~yGdd~~KV~EFl~~-----~~~L~EMGFp~~~VaeAL~~~dND~DKAL~~L 217 (222)
+...|....|=+++++.+++.. ...+.+-|-....+.+....-.+-+.++|..|
T Consensus 185 al~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~~p~~l~~~v~spgG~t~~gl~~l 243 (247)
T 3gt0_A 185 AMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGTTIEAVATL 243 (247)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSCC-----------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCCchHHHHHHHH
Confidence 3334333466677777777554 34456667777777777777777777777665
No 157
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=22.55 E-value=1.1e+02 Score=20.72 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=39.0
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHHcCCChh---HHHHHHHHHHHHHhcC--CCCchHHHHHHhccCC
Q 046691 148 SDPVVSRYIALGLNREAVHIAVANYGDNPT---KVREFANGYTILREMG--FSSNNVAEVLIMYEND 209 (222)
Q Consensus 148 ~DP~V~ky~amG~~reaV~~Av~~yGdd~~---KV~EFl~~~~~L~EMG--Fp~~~VaeAL~~~dND 209 (222)
--.++.+.+...-..+.+..+...|-.|.+ ...||...+.. +| +....+.+.+..+|-|
T Consensus 14 ~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~---~g~~~~~~e~~~l~~~~D~d 77 (94)
T 2kz2_A 14 ENLYFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTN---LGEKLTDEEVDEMIREADID 77 (94)
T ss_dssp CTHHHHHHHCCCSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHH---HTCCCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCC
Confidence 345666777777888999999988854433 34566655544 45 4556777777777644
No 158
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.26 E-value=39 Score=22.71 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCChh---HHHHHHHHHHHHHhcCCCCchHHHHHHhccCCH
Q 046691 163 EAVHIAVANYGDNPT---KVREFANGYTILREMGFSSNNVAEVLIMYENDT 210 (222)
Q Consensus 163 eaV~~Av~~yGdd~~---KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dND~ 210 (222)
+.+..+...|-.|.+ ...||... |+.+|+....|.+.+..+|.|-
T Consensus 27 ~~l~~~F~~~D~d~~G~I~~~El~~~---l~~~g~~~~~~~~~~~~~D~d~ 74 (91)
T 2pmy_A 27 ARLRSVFAACDANRSGRLEREEFRAL---CTELRVRPADAEAVFQRLDADR 74 (91)
T ss_dssp HHHHHHHHHHCTTCSSSEEHHHHHHH---HHHTTCCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCCCCCCcHHHHHHH---HHHcCcCHHHHHHHHHHhCCCC
Confidence 334455555533322 34566554 4556888888888888777553
No 159
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=20.93 E-value=2.2e+02 Score=21.44 Aligned_cols=66 Identities=14% Similarity=-0.006 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHc-CCChhHHHHHHHHHHHHHhcCCCCchHHHHHHhccC----CHHHHHHHHh
Q 046691 150 PVVSRYIALGLNREAVHIAVANY-GDNPTKVREFANGYTILREMGFSSNNVAEVLIMYEN----DTDKALAHLL 218 (222)
Q Consensus 150 P~V~ky~amG~~reaV~~Av~~y-Gdd~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~~dN----D~DKAL~~LL 218 (222)
....+.++.|.......+|..-+ ..|.+|+.+++.. ..+.|.+.....=+.+-.++ |.++|++.|.
T Consensus 7 ~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~---a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 7 SQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQK---AAAQGDGDALALLAQLKIRNPQQADYPQARQLAE 77 (212)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH---HHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 35566778888877777777633 3477777777554 44567766655555555556 8999998774
No 160
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=20.74 E-value=21 Score=33.61 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=0.0
Q ss_pred CCCchHHHHHHhccCCHHHHHHHHhcc
Q 046691 194 FSSNNVAEVLIMYENDTDKALAHLLGS 220 (222)
Q Consensus 194 Fp~~~VaeAL~~~dND~DKAL~~LLs~ 220 (222)
-+.+.|.+||+.+.+|++||+++||..
T Consensus 50 ~~~~~~~~a~~~y~~d~~k~~~~~l~~ 76 (592)
T 3mca_A 50 ISEKEIADTVWYYYFDVEKSVNYLLQK 76 (592)
T ss_dssp ---------------------------
T ss_pred CcHHHHHHHhhhhhcchhhHHHHhhhh
Confidence 588999999999999999999999864
No 161
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=20.68 E-value=2.9e+02 Score=22.83 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCChhHHHHHHHH
Q 046691 151 VVSRYIALGLNREAVHIAVANYGDNPTKVREFANG 185 (222)
Q Consensus 151 ~V~ky~amG~~reaV~~Av~~yGdd~~KV~EFl~~ 185 (222)
.+.++++.|++.+.++.. +|-+...|..++..
T Consensus 126 ~~~~l~~~g~t~~~iA~~---lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 126 GYQALLEMGLTQEEVARR---VGKARSTVANALRL 157 (230)
T ss_dssp HHHHHHHTTCCHHHHHHH---HTCCHHHHHHHHHG
T ss_pred HHHHHHHcCCCHHHHHHH---HCcCHHHHHHHHHH
Confidence 445566777777666543 56677777666544
No 162
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=20.48 E-value=1.1e+02 Score=21.51 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=26.8
Q ss_pred HHHHHHHH----HHHHHhcCC--------CCchHHHHHHhccCCHHHHHHHH
Q 046691 178 KVREFANG----YTILREMGF--------SSNNVAEVLIMYENDTDKALAHL 217 (222)
Q Consensus 178 KV~EFl~~----~~~L~EMGF--------p~~~VaeAL~~~dND~DKAL~~L 217 (222)
+|.|.+.. ...|++.|+ .-..+.+|+..|+-|.|+-|+.|
T Consensus 8 tI~eIv~~~P~~~~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eL 59 (76)
T 2k53_A 8 IIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKEL 59 (76)
T ss_dssp BHHHHHHHCGGGHHHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHCHHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHH
Confidence 34444443 345666665 24678999999999998777665
No 163
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.23 E-value=97 Score=25.53 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCC-CchHHHHHHh
Q 046691 151 VVSRYI-ALGLNREAVHIAVANYGDNPTKVREFANGYTILREMGFS-SNNVAEVLIM 205 (222)
Q Consensus 151 ~V~ky~-amG~~reaV~~Av~~yGdd~~KV~EFl~~~~~L~EMGFp-~~~VaeAL~~ 205 (222)
++..+. .-|.++.-|.+||.+.+.=.++..|=+ +...+||||. ++.++.+|..
T Consensus 11 Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV--~~~a~~lgY~~pn~~a~~l~~ 65 (366)
T 3h5t_A 11 TLASIAAKLGISRTTVSNAYNRPEQLSAELRQRI--LDTAEDMGYLGPDPVARSLRT 65 (366)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHH--HHHHHHTTC------------
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHH--HHHHHHhCCCCCCHHHHHhhc
Confidence 444444 579999999999997665122222221 4567899998 9999888853
No 164
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=20.21 E-value=44 Score=29.57 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=18.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCchHHHHHHh
Q 046691 175 NPTKVREFANGYTILREMGFSSNNVAEVLIM 205 (222)
Q Consensus 175 d~~KV~EFl~~~~~L~EMGFp~~~VaeAL~~ 205 (222)
|.+++.+|+. .|+||.++.|..+|-.
T Consensus 301 d~~~l~~fl~-----~~~~f~~~rv~~~~~~ 326 (341)
T 3q8k_A 301 NEEELIKFMC-----GEKQFSEERIRSGVKR 326 (341)
T ss_dssp CHHHHHHHHT-----TTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-----HhcCCCHHHHHHHHHH
Confidence 4555555542 7899999999888764
Done!