BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046692
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 211 LDVSQDQWHRIDASI---LKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRS 259
L + D HR+ S + G FS +S++DD Y VG C++ G +D S
Sbjct: 309 LGRATDPEHRVKXSFGTDVGGGNRFSXISVLDDAYKVGXCNNTLLDGSIDPS 360
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 233 SVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSM 289
+V+S MD VYV+GG S DR K + V+ P W+++A M+ ARS+
Sbjct: 143 TVLSHMDLVYVIGGKGS-------DR---KCLNKMCVYDPKKFEWKELAPMQTARSL 189
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 196 FGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSV----------------VSIMD 239
F A+ D G + QWH++ A +K R V D
Sbjct: 280 FTAIYDAEIPGHM-----CNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTND 334
Query: 240 DVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVS 298
V+V G L FG F +G + LTK K + +A+++ + G+ VS
Sbjct: 335 PVFVGGFPGGLNQFGLTTNIRF---RGCIRSLKLTKGTGKPLEVNFAKALELRGVQPVS 390
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|B Chain B, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|C Chain C, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|D Chain D, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
Length = 191
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 196 FGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSV----------------VSIMD 239
F A+ D G + QWH++ A +K R V D
Sbjct: 77 FTAIYDAEIPGHM-----CNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTND 131
Query: 240 DVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVS 298
V+V G L FG F +G + LTK K + +A+++ + G+ VS
Sbjct: 132 PVFVGGFPGGLNQFGLTTNIRF---RGCIRSLKLTKGTGKPLEVNFAKALELRGVQPVS 187
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 196 FGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSV----------------VSIMD 239
F A+ D G + QWH++ A +K R V D
Sbjct: 280 FTAIYDAEIPGHM-----CNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTND 334
Query: 240 DVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVS 298
V+V G L FG F +G + LTK K + +A+++ + G+ VS
Sbjct: 335 PVFVGGFPGGLNQFGLTTNIRF---RGCIRSLKLTKGTGKPLEVNFAKALELRGVQPVS 390
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKW 403
VL+ VGG GS P+D E YD + +W
Sbjct: 16 VLLVVGGFGSQQSPIDVVEKYDPKTQEW 43
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 390 LDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVC-NGIFYVYSE-------TDKLAGYDIE 441
LDS YD V+ KW E++ LP+ V V+ NG+ Y T+++ Y+ +
Sbjct: 126 LDSVLCYDPVAAKWSEVKNLPIK--VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPK 183
Query: 442 RGFW 445
+G W
Sbjct: 184 KGDW 187
>pdb|2AEX|A Chain A, The 1.58a Crystal Structure Of Human Coproporphyrinogen
Oxidase Reveals The Structural Basis Of Hereditary
Coproporphyria
Length = 346
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)
Query: 112 SYGVKEKFWKKSNR-KYLELEDSV-RNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKK 169
S+ +EK W++ R +Y+E R ++ +F P +E L+ LPLT+ +
Sbjct: 268 SFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTA---------R 318
Query: 170 WRYLTT 175
W Y+ +
Sbjct: 319 WEYMHS 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,130,922
Number of Sequences: 62578
Number of extensions: 593842
Number of successful extensions: 1028
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 24
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)