Query 046692
Match_columns 464
No_of_seqs 312 out of 2415
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:30:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 2.3E-43 5.1E-48 374.9 24.6 293 117-457 204-515 (571)
2 PHA02713 hypothetical protein; 100.0 5.4E-41 1.2E-45 357.7 22.1 293 117-451 194-543 (557)
3 KOG4441 Proteins containing BT 100.0 2.4E-38 5.1E-43 336.6 22.2 250 158-453 301-558 (571)
4 PHA03098 kelch-like protein; P 100.0 4.2E-36 9.2E-41 320.6 26.5 291 117-453 175-523 (534)
5 PHA02790 Kelch-like protein; P 100.0 1E-34 2.2E-39 305.1 24.2 202 188-448 269-477 (480)
6 PHA02713 hypothetical protein; 100.0 2.2E-33 4.7E-38 299.4 25.3 223 191-458 258-506 (557)
7 PLN02153 epithiospecifier prot 100.0 1.1E-30 2.4E-35 263.6 25.7 253 166-458 5-304 (341)
8 PLN02193 nitrile-specifier pro 100.0 6.6E-30 1.4E-34 268.0 25.1 238 168-451 151-420 (470)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 7.7E-30 1.7E-34 257.9 22.9 233 188-458 15-315 (346)
10 TIGR03548 mutarot_permut cycli 100.0 3E-29 6.4E-34 251.3 24.0 224 187-456 10-295 (323)
11 PRK14131 N-acetylneuraminic ac 100.0 1.4E-28 3E-33 251.4 22.4 252 169-458 18-337 (376)
12 PLN02153 epithiospecifier prot 100.0 1.3E-28 2.8E-33 248.5 21.3 251 158-441 50-339 (341)
13 PRK14131 N-acetylneuraminic ac 100.0 4.3E-28 9.2E-33 247.8 19.9 257 167-447 61-374 (376)
14 TIGR03547 muta_rot_YjhT mutatr 100.0 4.2E-28 9.2E-33 245.2 18.8 243 166-433 39-331 (346)
15 TIGR03548 mutarot_permut cycli 100.0 1.1E-27 2.3E-32 240.0 21.6 222 169-432 52-312 (323)
16 PHA03098 kelch-like protein; P 100.0 2.1E-27 4.5E-32 253.7 22.7 222 190-458 250-481 (534)
17 PLN02193 nitrile-specifier pro 99.9 4.6E-26 9.9E-31 239.0 25.9 226 189-458 119-371 (470)
18 PHA02790 Kelch-like protein; P 99.9 1.1E-26 2.4E-31 244.4 18.3 188 161-407 290-478 (480)
19 KOG4693 Uncharacterized conser 99.9 5.1E-23 1.1E-27 190.4 17.7 232 188-457 21-295 (392)
20 KOG4693 Uncharacterized conser 99.9 5.1E-23 1.1E-27 190.3 14.3 207 188-433 86-312 (392)
21 KOG0379 Kelch repeat-containin 99.8 1.1E-19 2.4E-24 190.7 21.7 223 188-452 68-312 (482)
22 KOG1230 Protein containing rep 99.8 4.8E-19 1E-23 172.8 15.9 232 188-448 76-347 (521)
23 KOG0379 Kelch repeat-containin 99.8 1.7E-17 3.7E-22 174.3 19.3 194 225-459 57-270 (482)
24 KOG4152 Host cell transcriptio 99.8 3.4E-18 7.5E-23 170.3 12.3 239 168-449 17-310 (830)
25 KOG1230 Protein containing rep 99.7 2.3E-16 4.9E-21 154.3 16.1 198 224-456 62-298 (521)
26 KOG4152 Host cell transcriptio 99.7 5.7E-16 1.2E-20 154.6 16.4 248 159-432 58-341 (830)
27 COG3055 Uncharacterized protei 99.5 2.8E-12 6E-17 124.3 18.0 245 173-456 30-341 (381)
28 COG3055 Uncharacterized protei 99.5 2.4E-12 5.2E-17 124.8 16.4 240 166-433 68-359 (381)
29 PF13964 Kelch_6: Kelch motif 99.2 2.4E-11 5.2E-16 87.0 6.4 50 228-287 1-50 (50)
30 KOG2437 Muskelin [Signal trans 99.0 2.2E-10 4.9E-15 114.9 5.9 239 188-449 270-542 (723)
31 PF01344 Kelch_1: Kelch motif; 98.9 1.2E-09 2.6E-14 77.0 4.7 47 228-284 1-47 (47)
32 PF13964 Kelch_6: Kelch motif 98.8 8.4E-09 1.8E-13 73.7 5.4 46 368-413 5-50 (50)
33 PF07646 Kelch_2: Kelch motif; 98.8 2.2E-08 4.8E-13 71.2 6.1 49 228-284 1-49 (49)
34 PF13415 Kelch_3: Galactose ox 98.7 2.4E-08 5.2E-13 71.1 5.9 49 238-295 1-49 (49)
35 TIGR01640 F_box_assoc_1 F-box 98.6 2.7E-07 5.7E-12 87.9 11.5 57 391-447 70-132 (230)
36 PF13418 Kelch_4: Galactose ox 98.6 4.5E-08 9.7E-13 69.6 4.7 48 228-285 1-49 (49)
37 PF01344 Kelch_1: Kelch motif; 98.6 3.3E-08 7.2E-13 69.5 3.3 43 368-410 5-47 (47)
38 smart00612 Kelch Kelch domain. 98.5 2.2E-07 4.7E-12 64.8 5.0 46 240-296 1-46 (47)
39 PF13415 Kelch_3: Galactose ox 98.4 5.4E-07 1.2E-11 64.0 5.6 47 190-237 1-49 (49)
40 KOG2437 Muskelin [Signal trans 98.3 4.5E-07 9.8E-12 91.6 4.9 200 213-442 236-472 (723)
41 smart00612 Kelch Kelch domain. 98.3 9E-07 1.9E-11 61.6 4.9 47 192-239 1-47 (47)
42 PF07646 Kelch_2: Kelch motif; 98.3 1.1E-06 2.4E-11 62.4 5.0 43 368-410 5-49 (49)
43 PF13418 Kelch_4: Galactose ox 98.1 1.8E-06 3.8E-11 61.2 2.8 38 373-410 11-48 (49)
44 PF13854 Kelch_5: Kelch motif 98.1 9.3E-06 2E-10 55.6 5.5 42 225-275 1-42 (42)
45 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00013 2.8E-09 69.6 12.0 148 208-411 48-210 (243)
46 PLN02772 guanylate kinase 97.7 0.00013 2.8E-09 74.0 9.2 73 226-325 22-97 (398)
47 TIGR01640 F_box_assoc_1 F-box 97.5 0.0096 2.1E-07 56.5 17.9 196 206-443 14-230 (230)
48 PLN02772 guanylate kinase 97.4 0.0006 1.3E-08 69.2 9.2 76 367-442 27-109 (398)
49 PF07250 Glyoxal_oxid_N: Glyox 97.4 0.0069 1.5E-07 57.9 15.8 150 266-454 47-211 (243)
50 PF07893 DUF1668: Protein of u 96.9 0.032 7E-07 56.4 15.3 47 233-296 70-117 (342)
51 PF12937 F-box-like: F-box-lik 96.8 0.00068 1.5E-08 47.4 1.7 39 141-179 2-40 (47)
52 PF13854 Kelch_5: Kelch motif 96.6 0.0031 6.8E-08 43.0 4.1 34 368-401 8-42 (42)
53 PRK11138 outer membrane biogen 96.4 0.62 1.3E-05 47.9 21.1 191 188-447 67-282 (394)
54 PRK11138 outer membrane biogen 96.2 0.6 1.3E-05 48.0 19.9 65 370-447 252-320 (394)
55 PF07893 DUF1668: Protein of u 96.2 0.084 1.8E-06 53.4 13.2 52 189-247 75-126 (342)
56 smart00256 FBOX A Receptor for 96.1 0.0022 4.8E-08 43.0 1.0 38 143-180 1-38 (41)
57 PF13360 PQQ_2: PQQ-like domai 96.0 1.4 3E-05 41.2 21.5 187 189-444 35-233 (238)
58 PF00646 F-box: F-box domain; 96.0 0.0034 7.4E-08 43.9 1.4 40 142-181 5-44 (48)
59 PF13360 PQQ_2: PQQ-like domai 95.7 1.8 4E-05 40.4 21.7 176 207-448 4-200 (238)
60 TIGR03300 assembly_YfgL outer 95.2 2.8 6.1E-05 42.6 20.2 64 371-447 238-305 (377)
61 TIGR03300 assembly_YfgL outer 95.2 3.5 7.7E-05 41.9 20.8 188 188-447 63-267 (377)
62 PF03089 RAG2: Recombination a 94.9 0.53 1.1E-05 45.5 12.4 83 280-384 81-174 (337)
63 KOG0281 Beta-TrCP (transducin 94.4 0.9 2E-05 45.0 13.0 51 129-180 65-119 (499)
64 PF08450 SGL: SMP-30/Gluconola 94.0 5.7 0.00012 37.7 19.5 197 190-449 11-221 (246)
65 PF12768 Rax2: Cortical protei 93.8 0.77 1.7E-05 45.0 11.4 71 375-450 48-130 (281)
66 smart00284 OLF Olfactomedin-li 92.4 7.4 0.00016 37.5 15.5 78 190-286 34-115 (255)
67 KOG0310 Conserved WD40 repeat- 89.7 20 0.00044 37.1 16.3 57 375-439 250-306 (487)
68 KOG2055 WD40 repeat protein [G 89.1 18 0.0004 37.3 15.4 74 188-283 222-298 (514)
69 PF07707 BACK: BTB And C-termi 87.4 0.11 2.3E-06 42.4 -1.3 31 119-149 68-100 (103)
70 PF03089 RAG2: Recombination a 87.2 5.1 0.00011 38.9 9.7 116 191-324 39-174 (337)
71 PRK13684 Ycf48-like protein; P 87.0 31 0.00068 34.6 16.0 173 208-442 154-332 (334)
72 PF12768 Rax2: Cortical protei 85.4 4 8.6E-05 40.1 8.3 59 390-450 15-81 (281)
73 KOG2120 SCF ubiquitin ligase, 83.3 0.49 1.1E-05 46.3 0.9 39 140-178 98-136 (419)
74 PF10282 Lactonase: Lactonase, 83.2 53 0.0012 33.0 16.8 93 195-298 3-97 (345)
75 KOG0310 Conserved WD40 repeat- 81.4 20 0.00044 37.2 11.5 63 374-443 165-227 (487)
76 PF02191 OLF: Olfactomedin-lik 81.2 51 0.0011 31.7 13.9 69 189-278 29-102 (250)
77 TIGR03866 PQQ_ABC_repeats PQQ- 78.0 63 0.0014 30.5 18.1 64 192-279 2-67 (300)
78 smart00875 BACK BTB And C-term 76.8 1.2 2.6E-05 35.6 1.1 30 119-149 68-99 (101)
79 PF08268 FBA_3: F-box associat 76.6 17 0.00037 30.8 8.3 81 189-280 4-87 (129)
80 PF05096 Glu_cyclase_2: Glutam 76.5 77 0.0017 30.8 15.3 149 233-444 49-206 (264)
81 PLN02919 haloacid dehalogenase 75.8 1.7E+02 0.0037 34.4 21.5 66 373-444 813-891 (1057)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 75.7 51 0.0011 35.5 13.4 69 372-447 118-197 (527)
83 KOG0274 Cdc4 and related F-box 73.9 1.2E+02 0.0026 32.8 15.5 47 132-178 100-146 (537)
84 PRK13684 Ycf48-like protein; P 73.3 1.1E+02 0.0023 30.8 15.9 69 373-450 224-297 (334)
85 PRK11028 6-phosphogluconolacto 72.2 1E+02 0.0023 30.3 19.2 68 375-448 138-214 (330)
86 PRK11028 6-phosphogluconolacto 70.0 1.1E+02 0.0025 30.0 13.8 63 375-443 92-158 (330)
87 PF12217 End_beta_propel: Cata 69.5 1.1E+02 0.0023 29.7 12.2 61 369-430 195-256 (367)
88 PF03178 CPSF_A: CPSF A subuni 68.7 1.1E+02 0.0023 30.2 13.2 61 206-285 62-128 (321)
89 PF08268 FBA_3: F-box associat 68.6 33 0.00072 29.0 8.2 77 372-450 3-89 (129)
90 PF13570 PQQ_3: PQQ-like domai 68.5 9.9 0.00021 25.0 3.9 23 420-442 18-40 (40)
91 COG4946 Uncharacterized protei 68.1 1.6E+02 0.0036 30.9 16.0 17 207-223 288-304 (668)
92 TIGR03074 PQQ_membr_DH membran 67.9 2.2E+02 0.0047 32.3 17.5 51 333-402 335-388 (764)
93 PRK04792 tolB translocation pr 67.2 1.7E+02 0.0036 30.7 16.6 58 391-450 330-391 (448)
94 PF06433 Me-amine-dh_H: Methyl 66.7 71 0.0015 32.2 11.0 71 373-445 248-324 (342)
95 PLN03215 ascorbic acid mannose 66.5 2.7 5.9E-05 42.8 1.1 37 140-176 4-41 (373)
96 KOG0278 Serine/threonine kinas 66.4 30 0.00065 33.2 7.8 60 374-441 235-299 (334)
97 KOG2321 WD40 repeat protein [G 64.9 53 0.0012 35.1 10.0 14 265-278 155-168 (703)
98 PF05096 Glu_cyclase_2: Glutam 63.8 47 0.001 32.2 8.9 78 369-453 49-128 (264)
99 TIGR03074 PQQ_membr_DH membran 63.8 2.6E+02 0.0056 31.7 16.5 38 368-406 310-353 (764)
100 TIGR03866 PQQ_ABC_repeats PQQ- 63.6 1.3E+02 0.0029 28.3 20.4 64 190-276 42-106 (300)
101 PF14870 PSII_BNR: Photosynthe 60.6 1.7E+02 0.0037 29.0 12.6 194 190-450 71-270 (302)
102 PLN00033 photosystem II stabil 60.6 2.1E+02 0.0046 29.6 18.0 28 422-449 337-364 (398)
103 TIGR02800 propeller_TolB tol-p 60.6 2E+02 0.0043 29.3 18.3 57 392-450 303-363 (417)
104 PLN00181 protein SPA1-RELATED; 57.1 3.3E+02 0.0072 30.8 17.1 64 373-442 670-739 (793)
105 KOG2997 F-box protein FBX9 [Ge 52.2 6 0.00013 39.1 0.7 43 140-182 107-154 (366)
106 COG4257 Vgb Streptogramin lyas 51.3 2.5E+02 0.0054 27.6 15.8 58 391-450 254-314 (353)
107 PF12217 End_beta_propel: Cata 50.6 2.5E+02 0.0054 27.3 12.8 56 231-296 193-249 (367)
108 PRK00178 tolB translocation pr 50.2 3E+02 0.0066 28.2 16.6 60 206-281 223-283 (430)
109 KOG2055 WD40 repeat protein [G 49.8 1.6E+02 0.0035 30.8 10.3 64 372-443 312-376 (514)
110 TIGR03075 PQQ_enz_alc_DH PQQ-d 49.2 74 0.0016 34.2 8.5 72 369-447 64-146 (527)
111 PF14870 PSII_BNR: Photosynthe 49.2 2.8E+02 0.0061 27.5 14.4 171 207-438 125-301 (302)
112 KOG4378 Nuclear protein COP1 [ 46.9 3.6E+02 0.0078 28.7 12.3 65 370-442 216-281 (673)
113 cd00200 WD40 WD40 domain, foun 46.3 2.2E+02 0.0049 25.6 18.1 50 392-443 200-251 (289)
114 PF03178 CPSF_A: CPSF A subuni 45.9 3E+02 0.0066 27.0 13.6 76 371-455 95-173 (321)
115 cd00094 HX Hemopexin-like repe 45.5 2.4E+02 0.0051 25.7 16.0 59 374-444 110-178 (194)
116 PF06433 Me-amine-dh_H: Methyl 43.8 3.1E+02 0.0068 27.7 11.3 119 265-410 17-137 (342)
117 cd00216 PQQ_DH Dehydrogenases 39.5 4.9E+02 0.011 27.5 21.5 70 188-280 59-137 (488)
118 smart00564 PQQ beta-propeller 38.0 67 0.0015 19.6 3.8 24 421-444 4-27 (33)
119 cd00200 WD40 WD40 domain, foun 37.8 3E+02 0.0066 24.7 18.9 51 392-444 158-210 (289)
120 PLN03215 ascorbic acid mannose 37.1 2.3E+02 0.0049 29.1 9.3 77 368-452 203-305 (373)
121 smart00284 OLF Olfactomedin-li 36.6 2E+02 0.0043 27.8 8.4 76 375-454 35-115 (255)
122 PTZ00420 coronin; Provisional 36.0 6.1E+02 0.013 27.7 18.4 74 374-449 225-301 (568)
123 COG4257 Vgb Streptogramin lyas 36.0 73 0.0016 31.2 5.2 60 206-281 254-313 (353)
124 KOG0296 Angio-associated migra 35.8 4.9E+02 0.011 26.5 14.4 27 376-408 299-325 (399)
125 cd00216 PQQ_DH Dehydrogenases 35.5 1.3E+02 0.0029 31.8 7.8 73 369-448 56-137 (488)
126 cd00094 HX Hemopexin-like repe 35.4 3.4E+02 0.0074 24.6 14.6 23 372-402 156-178 (194)
127 PF08450 SGL: SMP-30/Gluconola 35.1 2.4E+02 0.0053 26.3 8.9 68 374-452 11-79 (246)
128 PF10282 Lactonase: Lactonase, 35.1 4.7E+02 0.01 26.1 19.1 73 374-452 203-288 (345)
129 PF02191 OLF: Olfactomedin-lik 33.9 1.1E+02 0.0024 29.4 6.3 73 374-452 30-108 (250)
130 KOG1332 Vesicle coat complex C 33.8 2.5E+02 0.0054 27.1 8.2 56 394-450 238-296 (299)
131 KOG0646 WD40 repeat protein [G 33.3 5.9E+02 0.013 26.7 13.2 27 417-443 282-309 (476)
132 PF09910 DUF2139: Uncharacteri 31.6 2E+02 0.0044 28.5 7.5 42 203-244 170-219 (339)
133 KOG3881 Uncharacterized conser 31.5 4.4E+02 0.0095 27.0 10.0 154 188-402 158-323 (412)
134 KOG1036 Mitotic spindle checkp 31.5 5.3E+02 0.012 25.6 13.8 57 207-282 36-92 (323)
135 COG3823 Glutamine cyclotransfe 29.9 1.8E+02 0.0039 27.4 6.5 68 368-441 49-119 (262)
136 KOG0289 mRNA splicing factor [ 29.2 5.4E+02 0.012 26.9 10.3 59 392-452 412-473 (506)
137 PF02897 Peptidase_S9_N: Proly 28.2 6.5E+02 0.014 25.6 16.8 57 205-276 251-312 (414)
138 KOG0316 Conserved WD40 repeat- 27.0 5.8E+02 0.013 24.6 13.9 203 194-464 74-282 (307)
139 KOG0286 G-protein beta subunit 26.9 4E+02 0.0088 26.4 8.6 67 372-444 106-177 (343)
140 PRK04922 tolB translocation pr 26.2 7.3E+02 0.016 25.5 18.5 57 392-450 317-377 (433)
141 KOG2048 WD40 repeat protein [G 25.6 9.3E+02 0.02 26.6 12.1 67 264-348 46-116 (691)
142 KOG0315 G-protein beta subunit 25.2 6.4E+02 0.014 24.5 13.0 51 391-442 146-198 (311)
143 PF07734 FBA_1: F-box associat 23.8 3.6E+02 0.0077 23.7 7.4 83 371-454 2-96 (164)
144 KOG0289 mRNA splicing factor [ 23.3 8.8E+02 0.019 25.4 15.7 35 375-415 444-478 (506)
145 PF10470 AKAP7_RIRII_bdg: PKA- 23.0 68 0.0015 23.2 1.9 23 15-37 5-32 (61)
146 PF03022 MRJP: Major royal jel 22.3 7.4E+02 0.016 24.2 13.5 52 373-430 195-253 (287)
147 TIGR03032 conserved hypothetic 21.6 4.3E+02 0.0093 26.5 7.8 64 390-459 184-249 (335)
148 PF13866 zf-SAP30: SAP30 zinc- 21.1 80 0.0017 24.5 2.1 22 12-33 20-41 (78)
149 PF14781 BBS2_N: Ciliary BBSom 20.5 2.8E+02 0.0061 24.1 5.6 66 376-448 65-134 (136)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.3e-43 Score=374.88 Aligned_cols=293 Identities=21% Similarity=0.304 Sum_probs=243.0
Q ss_pred cccccccC--ccccchhhhhhcccCCCCChHHHHHHHHhhCCcchhhhhhcccc-------ccccccCCchHHH-HHhhc
Q 046692 117 EKFWKKSN--RKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCK-------KWRYLTTTPRFLQ-MRREG 186 (464)
Q Consensus 117 ~~~W~~~~--~r~~~l~~ll~~vrl~~~lp~dl~~~iL~rLp~~sl~~~~~vck-------~W~~l~~~~~f~~-~r~~~ 186 (464)
.++|++|| +|..|++++++++|++++.|.+|.+.+ ....+++.++.|+ .|+.++......+ .+...
T Consensus 204 ~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v----~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~ 279 (571)
T KOG4441|consen 204 AMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIV----ESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRP 279 (571)
T ss_pred HHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHH----hhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCccc
Confidence 46799999 667899999999999988888887755 3333555555554 3544444322111 11111
Q ss_pred c-CCCCeEEEeccccC-CccccceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCcccc
Q 046692 187 L-HQNPWLFLFGAVKD-GYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTH 264 (464)
Q Consensus 187 ~-~~~~~l~v~GG~~~-~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~ 264 (464)
. ...+.||++||... ....+.+.+|||.+++|..+++ |+.+|..+++++++|+|||+||.+ . .....
T Consensus 280 r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~-m~~~r~~~~~~~~~~~lYv~GG~~---------~-~~~~l 348 (571)
T KOG4441|consen 280 RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP-MPSPRCRVGVAVLNGKLYVVGGYD---------S-GSDRL 348 (571)
T ss_pred CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCC-CCcccccccEEEECCEEEEEcccc---------C-CCccc
Confidence 2 45688999999986 5678899999999999999998 889999999999999999999954 1 22567
Q ss_pred ceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCC
Q 046692 265 KGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFD 344 (464)
Q Consensus 265 ~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n 344 (464)
+++|+|||.+++|+.+|+|+.+|..+++++++ | .||++||.++ ...++++|+|||.+|
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~----------------g--~iYavGG~dg----~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD----------------G--KLYAVGGFDG----EKSLNSVECYDPVTN 406 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeEEEC----------------C--EEEEEecccc----ccccccEEEecCCCC
Confidence 89999999999999999999999999999998 3 3899999975 688999999999999
Q ss_pred cccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEEC
Q 046692 345 GFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCN 423 (464)
Q Consensus 345 ~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~ 423 (464)
+|+. .+|+.++.. +++++++++||++||.++....++++++|||.+|+|+.+++|+.+|..++ +++++
T Consensus 407 ~W~~va~m~~~r~~----------~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~ 475 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSG----------HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLN 475 (571)
T ss_pred cccccCCCCcceee----------eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEEC
Confidence 9999 777775432 46789999999999998775689999999999999999999999988876 45999
Q ss_pred CEEEEEeCCC------ceEEEeCCCCcEEEcccCCCCccc
Q 046692 424 GIFYVYSETD------KLAGYDIERGFWIGIQTSPFPPRV 457 (464)
Q Consensus 424 g~lYViGG~~------~v~~YD~~~~~W~~l~~lp~pr~~ 457 (464)
++||++||.+ +|++|||.+++|+.+++|+.+|.-
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 9999999965 599999999999999999988864
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=357.75 Aligned_cols=293 Identities=13% Similarity=0.172 Sum_probs=229.1
Q ss_pred cccccccC-ccccchhhhhhcccCCCCChHHHHH-----------HHHhhC----------C---------------cch
Q 046692 117 EKFWKKSN-RKYLELEDSVRNSRMHIFLPDDILE-----------MCLVRL----------P---------------LTS 159 (464)
Q Consensus 117 ~~~W~~~~-~r~~~l~~ll~~vrl~~~lp~dl~~-----------~iL~rL----------p---------------~~s 159 (464)
.++|++|| .+.+++.+||++|||+++.+.+++. .|...+ | ...
T Consensus 194 v~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r~~~l~~~~g~~~~~~~~ 273 (557)
T PHA02713 194 LLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMYPSCIQFLLDNKQNRNIIPRQLCLVCHDTKYNVCNPC 273 (557)
T ss_pred HHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhhHHHHHHHhhhhhhcccCCcceEEEEecCccccCCCC
Confidence 46799999 2234577999999999988876531 010110 0 012
Q ss_pred hhhhhccccccccccCCchHHHHHhhccCCCCeEEEecccc-CCccccceEEeeCCCCceeeccccccCCCcceEEEEEC
Q 046692 160 LMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVK-DGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIM 238 (464)
Q Consensus 160 l~~~~~vck~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~-~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~ 238 (464)
...+++..++|..++.+|.... .......++.||++||.. .....+.+++|||.+++|..+++ |+.+|..+++++++
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-m~~~R~~~~~~~~~ 351 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHII-NYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-MIKNRCRFSLAVID 351 (557)
T ss_pred EEEEeCCCCeEEECCCCCcccc-ceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-CcchhhceeEEEEC
Confidence 3457788889999888775221 223346789999999975 33456789999999999999998 88999999999999
Q ss_pred CEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceE
Q 046692 239 DDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRS 318 (464)
Q Consensus 239 ~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iy 318 (464)
++|||+||.++ . ...+++++|||.+++|+.+++||.+|..+++++++ |+ ||
T Consensus 352 g~IYviGG~~~---------~--~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~----------------g~--IY 402 (557)
T PHA02713 352 DTIYAIGGQNG---------T--NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLD----------------QY--IY 402 (557)
T ss_pred CEEEEECCcCC---------C--CCCceEEEEECCCCeEEECCCCCcccccccEEEEC----------------CE--EE
Confidence 99999999532 1 24678999999999999999999999999998887 33 89
Q ss_pred EecCcCCCC--------------CCccccccceeeecCCCcccc-cCCCCCCccceecccccccccccccCcEEEEEcCC
Q 046692 319 RLGGVSDVY--------------EDPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGL 383 (464)
Q Consensus 319 viGG~~~~~--------------~~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~ 383 (464)
++||.++.. .+...++++++|||.+|+|+. ++|+.++.. +++++++++||++||.
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~----------~~~~~~~~~IYv~GG~ 472 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR----------PGVVSHKDDIYVVCDI 472 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc----------CcEEEECCEEEEEeCC
Confidence 999976421 011236789999999999998 778776643 4568899999999998
Q ss_pred CCCCCccCceEEEeCCC-CcEEEeccCCCCCCcceEEeEECCEEEEEeCCC---ceEEEeCCCCcEEEcccC
Q 046692 384 GSWDEPLDSGEIYDSVS-NKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETD---KLAGYDIERGFWIGIQTS 451 (464)
Q Consensus 384 ~~~~~~l~~vevYD~~t-~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~---~v~~YD~~~~~W~~l~~l 451 (464)
++.......+++|||.+ |+|+.+++||.++...+ +++++|+||++||.+ .+++||+.+++|+.+++-
T Consensus 473 ~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~-~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 473 KDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH-TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CCCCccceeEEEecCCCCCCeeEccccCcccccce-eEEECCEEEEEeeecceeehhhcCcccccccchhhh
Confidence 64333345789999999 89999999999887655 468999999999965 499999999999988763
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-38 Score=336.62 Aligned_cols=250 Identities=22% Similarity=0.303 Sum_probs=215.3
Q ss_pred chhhhhhccccccccccCCchHHHHHhhccCCCCeEEEecccc-CCccccceEEeeCCCCceeeccccccCCCcceEEEE
Q 046692 158 TSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVK-DGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVS 236 (464)
Q Consensus 158 ~sl~~~~~vck~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~-~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~ 236 (464)
..+..+++..+.|..+..+|.- +.+......++.||++||.+ +...++.+++|||.+++|..+++ |+.+|..+++++
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~-M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP-MNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcc-cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCC-ccCccccceeEE
Confidence 3455678888899999988841 12233347889999999998 56788999999999999999998 999999999999
Q ss_pred ECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccc
Q 046692 237 IMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFP 316 (464)
Q Consensus 237 ~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~ 316 (464)
++|.||++||.+| ...++++++|||.+++|..+++|+.+|+.+++++++ |+
T Consensus 379 l~g~iYavGG~dg-----------~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~----------------g~-- 429 (571)
T KOG4441|consen 379 LDGKLYAVGGFDG-----------EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG----------------GK-- 429 (571)
T ss_pred ECCEEEEEecccc-----------ccccccEEEecCCCCcccccCCCCcceeeeEEEEEC----------------CE--
Confidence 9999999999643 246789999999999999999999999999999997 43
Q ss_pred eEEecCcCCCCCCccccccceeeecCCCcccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEE
Q 046692 317 RSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEI 395 (464)
Q Consensus 317 iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vev 395 (464)
||++||.++. ...++++++|||.+|+|+. ++|+.++.+ .++++.+++||++||.++ ...+.++|.
T Consensus 430 iYi~GG~~~~---~~~l~sve~YDP~t~~W~~~~~M~~~R~~----------~g~a~~~~~iYvvGG~~~-~~~~~~VE~ 495 (571)
T KOG4441|consen 430 LYIIGGGDGS---SNCLNSVECYDPETNTWTLIAPMNTRRSG----------FGVAVLNGKIYVVGGFDG-TSALSSVER 495 (571)
T ss_pred EEEEcCcCCC---ccccceEEEEcCCCCceeecCCccccccc----------ceEEEECCEEEEECCccC-CCccceEEE
Confidence 8999998762 3389999999999999999 899988865 457899999999999987 466788999
Q ss_pred EeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCC------CceEEEeCCCCcEEEcccCCC
Q 046692 396 YDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET------DKLAGYDIERGFWIGIQTSPF 453 (464)
Q Consensus 396 YD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~------~~v~~YD~~~~~W~~l~~lp~ 453 (464)
|||.+|+|+.+++|+.++...+ ++++++++|++||. ++|++|||++++|+....+..
T Consensus 496 ydp~~~~W~~v~~m~~~rs~~g-~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~ 558 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRSAVG-VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPES 558 (571)
T ss_pred EcCCCCceeEcccCcccccccc-EEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCccc
Confidence 9999999999999998887665 46899999999986 489999999999999988433
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=320.64 Aligned_cols=291 Identities=17% Similarity=0.248 Sum_probs=221.6
Q ss_pred cccccccC--ccccchhhhhhcccCCCCChHHHHHHHH--hhCCcch---------------------------------
Q 046692 117 EKFWKKSN--RKYLELEDSVRNSRMHIFLPDDILEMCL--VRLPLTS--------------------------------- 159 (464)
Q Consensus 117 ~~~W~~~~--~r~~~l~~ll~~vrl~~~lp~dl~~~iL--~rLp~~s--------------------------------- 159 (464)
.++|++|+ .|.+++++||++|||+++.+++|.+.+. +......
T Consensus 175 v~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (534)
T PHA03098 175 IIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIY 254 (534)
T ss_pred HHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceE
Confidence 35699998 4668999999999999999888765331 0000000
Q ss_pred -----------hhhhhccccccccccCCchHHHHHhhccCCCCeEEEeccccCC-ccccceEEeeCCCCceeeccccccC
Q 046692 160 -----------LMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDG-YCSGEIHALDVSQDQWHRIDASILK 227 (464)
Q Consensus 160 -----------l~~~~~vck~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~~~-~~~~~v~~yD~~t~~W~~l~~~~~~ 227 (464)
...++...++|..+...+. .........++.||++||.... ...+.++.||+.+++|..+++ ++.
T Consensus 255 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~ 331 (534)
T PHA03098 255 IHITMSIFTYNYITNYSPLSEINTIIDIHY--VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE-LIY 331 (534)
T ss_pred eecccchhhceeeecchhhhhcccccCccc--cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC-CCc
Confidence 0012222344555543331 0111233678899999998643 355689999999999999988 788
Q ss_pred CCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCcccccccc
Q 046692 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCH 307 (464)
Q Consensus 228 ~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~ 307 (464)
+|..+++++++++|||+||..+ ....+++++|||.+++|+.+++||.+|..+++++++
T Consensus 332 ~R~~~~~~~~~~~lyv~GG~~~-----------~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~----------- 389 (534)
T PHA03098 332 PRKNPGVTVFNNRIYVIGGIYN-----------SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN----------- 389 (534)
T ss_pred ccccceEEEECCEEEEEeCCCC-----------CEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC-----------
Confidence 9999999999999999999531 134678999999999999999999999999998876
Q ss_pred CCCCCCccceEEecCcCCCCCCccccccceeeecCCCcccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCC
Q 046692 308 QSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSW 386 (464)
Q Consensus 308 ~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~ 386 (464)
+ .||++||... +...++.+++|||.+++|+. .++|.++.. +++++.+++||++||.+..
T Consensus 390 -----~--~iYv~GG~~~---~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~----------~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 390 -----N--LIYVIGGISK---NDELLKTVECFSLNTNKWSKGSPLPISHYG----------GCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred -----C--EEEEECCcCC---CCcccceEEEEeCCCCeeeecCCCCccccC----------ceEEEECCEEEEECCccCC
Confidence 3 3899999643 22347889999999999998 667665532 3457789999999998543
Q ss_pred C--CccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCC------CceEEEeCCCCcEEEcccCCC
Q 046692 387 D--EPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET------DKLAGYDIERGFWIGIQTSPF 453 (464)
Q Consensus 387 ~--~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~------~~v~~YD~~~~~W~~l~~lp~ 453 (464)
. ..++.+++||+.+++|+.++++|.++..++ +++++++|||+||. +.+++||+++++|..++.+|.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINAS-LCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccce-EEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 2 225679999999999999999998876654 45789999999985 489999999999999988764
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1e-34 Score=305.12 Aligned_cols=202 Identities=17% Similarity=0.179 Sum_probs=173.5
Q ss_pred CCCCeEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceE
Q 046692 188 HQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGV 267 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v 267 (464)
..++.||++||.+.....+.+++|||.+++|..+++ |+.+|..+++++++++||++||.. . .+++
T Consensus 269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~-m~~~r~~~~~v~~~~~iYviGG~~---------~-----~~sv 333 (480)
T PHA02790 269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP-MNSPRLYASGVPANNKLYVVGGLP---------N-----PTSV 333 (480)
T ss_pred EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC-CCchhhcceEEEECCEEEEECCcC---------C-----CCce
Confidence 367899999998765566789999999999999998 789999999999999999999942 1 2568
Q ss_pred EEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCccc
Q 046692 268 LVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFE 347 (464)
Q Consensus 268 ~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~ 347 (464)
++|||.+++|..+|+|+.+|..+++++++ |+ ||++||.++ ..+++++|||.+|+|+
T Consensus 334 e~ydp~~n~W~~~~~l~~~r~~~~~~~~~----------------g~--IYviGG~~~------~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 334 ERWFHGDAAWVNMPSLLKPRCNPAVASIN----------------NV--IYVIGGHSE------TDTTTEYLLPNHDQWQ 389 (480)
T ss_pred EEEECCCCeEEECCCCCCCCcccEEEEEC----------------CE--EEEecCcCC------CCccEEEEeCCCCEEE
Confidence 99999999999999999999999999887 33 899999743 2367899999999999
Q ss_pred c-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEE
Q 046692 348 G-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIF 426 (464)
Q Consensus 348 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~l 426 (464)
. ++|+.++.. +++++++++||++||. +++|||.+|+|+.+++||.++..++ +++++|+|
T Consensus 390 ~~~~m~~~r~~----------~~~~~~~~~IYv~GG~---------~e~ydp~~~~W~~~~~m~~~r~~~~-~~v~~~~I 449 (480)
T PHA02790 390 FGPSTYYPHYK----------SCALVFGRRLFLVGRN---------AEFYCESSNTWTLIDDPIYPRDNPE-LIIVDNKL 449 (480)
T ss_pred eCCCCCCcccc----------ceEEEECCEEEEECCc---------eEEecCCCCcEeEcCCCCCCccccE-EEEECCEE
Confidence 9 777766543 3457899999999983 6899999999999999998887665 46899999
Q ss_pred EEEeCC------CceEEEeCCCCcEEEc
Q 046692 427 YVYSET------DKLAGYDIERGFWIGI 448 (464)
Q Consensus 427 YViGG~------~~v~~YD~~~~~W~~l 448 (464)
||+||. +.+++|||++++|+..
T Consensus 450 YviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 450 LLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred EEECCcCCCcccceEEEEECCCCeEEec
Confidence 999985 4799999999999864
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=299.43 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=183.1
Q ss_pred CeEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEE
Q 046692 191 PWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVF 270 (464)
Q Consensus 191 ~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vy 270 (464)
..+++.||.. ......+++|||.+++|..+++ +|.+|..+++++++++|||+||... . ....+++++|
T Consensus 258 ~~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~-mp~~r~~~~~a~l~~~IYviGG~~~--------~--~~~~~~v~~Y 325 (557)
T PHA02713 258 LCLVCHDTKY-NVCNPCILVYNINTMEYSVIST-IPNHIINYASAIVDNEIIIAGGYNF--------N--NPSLNKVYKI 325 (557)
T ss_pred eEEEEecCcc-ccCCCCEEEEeCCCCeEEECCC-CCccccceEEEEECCEEEEEcCCCC--------C--CCccceEEEE
Confidence 4566655521 1123468999999999999998 7889999999999999999999521 1 1246789999
Q ss_pred eCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCcccc-c
Q 046692 271 SPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-S 349 (464)
Q Consensus 271 dp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~ 349 (464)
||.+++|..+|+|+.+|..+++++++ || ||++||.++ ...++++++|||.+|+|+. +
T Consensus 326 d~~~n~W~~~~~m~~~R~~~~~~~~~----------------g~--IYviGG~~~----~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 326 NIENKIHVELPPMIKNRCRFSLAVID----------------DT--IYAIGGQNG----TNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred ECCCCeEeeCCCCcchhhceeEEEEC----------------CE--EEEECCcCC----CCCCceEEEEECCCCeEEECC
Confidence 99999999999999999999999987 33 899999854 3457889999999999999 7
Q ss_pred CCCCCCccceecccccccccccccCcEEEEEcCCCCCC-----------------CccCceEEEeCCCCcEEEeccCCCC
Q 046692 350 LLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWD-----------------EPLDSGEIYDSVSNKWMEIQRLPVD 412 (464)
Q Consensus 350 ~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~-----------------~~l~~vevYD~~t~~W~~v~~~p~~ 412 (464)
+||.++.. .++++.+++||++||.++.. ..++++++|||.+|+|+.+++|+.+
T Consensus 384 ~mp~~r~~----------~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~ 453 (557)
T PHA02713 384 DMPIALSS----------YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG 453 (557)
T ss_pred CCCccccc----------ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc
Confidence 88877643 34568899999999985421 1267899999999999999999998
Q ss_pred CCcceEEeEECCEEEEEeCCC-------ceEEEeCCC-CcEEEcccCCCCcccc
Q 046692 413 FGVVSSGVVCNGIFYVYSETD-------KLAGYDIER-GFWIGIQTSPFPPRVI 458 (464)
Q Consensus 413 ~~~~~~~v~~~g~lYViGG~~-------~v~~YD~~~-~~W~~l~~lp~pr~~~ 458 (464)
+..++ +++++|+|||+||.+ .+++|||++ ++|+.+++||.+|..+
T Consensus 454 r~~~~-~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 454 TIRPG-VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccCc-EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 77654 468999999999852 579999999 8999999999988754
No 7
>PLN02153 epithiospecifier protein
Probab=99.98 E-value=1.1e-30 Score=263.56 Aligned_cols=253 Identities=16% Similarity=0.227 Sum_probs=184.2
Q ss_pred cccccccccCCch-HHHHHhh--ccCCCCeEEEeccccC--CccccceEEeeCCCCceeeccccccCCC---cceEEEEE
Q 046692 166 VCKKWRYLTTTPR-FLQMRRE--GLHQNPWLFLFGAVKD--GYCSGEIHALDVSQDQWHRIDASILKGR---FMFSVVSI 237 (464)
Q Consensus 166 vck~W~~l~~~~~-f~~~r~~--~~~~~~~l~v~GG~~~--~~~~~~v~~yD~~t~~W~~l~~~~~~~R---~~~s~~~~ 237 (464)
...+|..+..... .+.+|.. ....++.||++||... ....+++++||+.+++|..+++++..+| .+|+++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 3456888765321 1123322 2366899999999753 2345789999999999999987433444 37889999
Q ss_pred CCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCC-----CCCccccEEEEecCCCccccccccCCCCC
Q 046692 238 MDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASM-----RYARSMPILGISEVSPEFSIIPCHQSHQD 312 (464)
Q Consensus 238 ~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m-----~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (464)
+++|||+||+.+ . ...+++++|||.+++|+.+++| |.+|..|++++.+
T Consensus 85 ~~~iyv~GG~~~---------~--~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~---------------- 137 (341)
T PLN02153 85 GTKLYIFGGRDE---------K--REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE---------------- 137 (341)
T ss_pred CCEEEEECCCCC---------C--CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC----------------
Confidence 999999999532 1 2457899999999999999887 7899999988876
Q ss_pred CccceEEecCcCCC--CCCccccccceeeecCCCcccc-cCCC---CCCccceecccccccccccccCcEEEEEcCCCCC
Q 046692 313 RRFPRSRLGGVSDV--YEDPHRLSLRRQYRNSFDGFEG-SLLP---NRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSW 386 (464)
Q Consensus 313 gk~~iyviGG~~~~--~~~~~~l~~ve~Ydp~~n~W~~-~~l~---~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~ 386 (464)
+| ||++||.+.. ......++.+++||+.+++|+. .++. .++.. +++++.+++||++||.+..
T Consensus 138 ~~--iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~----------~~~~~~~~~iyv~GG~~~~ 205 (341)
T PLN02153 138 NH--VYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG----------AGFAVVQGKIWVVYGFATS 205 (341)
T ss_pred CE--EEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc----------ceEEEECCeEEEEeccccc
Confidence 33 8999997531 1112346789999999999998 3332 22211 3456789999999986421
Q ss_pred -------CCccCceEEEeCCCCcEEEecc---CCCCCCcceEEeEECCEEEEEeCC---------------CceEEEeCC
Q 046692 387 -------DEPLDSGEIYDSVSNKWMEIQR---LPVDFGVVSSGVVCNGIFYVYSET---------------DKLAGYDIE 441 (464)
Q Consensus 387 -------~~~l~~vevYD~~t~~W~~v~~---~p~~~~~~~~~v~~~g~lYViGG~---------------~~v~~YD~~ 441 (464)
...++++++||+.+++|+.+.. +|.++..+. +++++++|||+||. +.+++||++
T Consensus 206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~ 284 (341)
T PLN02153 206 ILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFA-HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE 284 (341)
T ss_pred cccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceee-eEEECCEEEEECcccCCccccccccccccccEEEEEcC
Confidence 1235789999999999999964 566665544 46889999999994 378999999
Q ss_pred CCcEEEcccC---CCCcccc
Q 046692 442 RGFWIGIQTS---PFPPRVI 458 (464)
Q Consensus 442 ~~~W~~l~~l---p~pr~~~ 458 (464)
+++|+.+... |.||..+
T Consensus 285 ~~~W~~~~~~~~~~~pr~~~ 304 (341)
T PLN02153 285 TLVWEKLGECGEPAMPRGWT 304 (341)
T ss_pred ccEEEeccCCCCCCCCCccc
Confidence 9999998642 4455443
No 8
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=6.6e-30 Score=268.03 Aligned_cols=238 Identities=18% Similarity=0.277 Sum_probs=182.6
Q ss_pred cccccccCCchHHHHHhhc--cCCCCeEEEeccccCC--ccccceEEeeCCCCceeecccc--ccC-CCcceEEEEECCE
Q 046692 168 KKWRYLTTTPRFLQMRREG--LHQNPWLFLFGAVKDG--YCSGEIHALDVSQDQWHRIDAS--ILK-GRFMFSVVSIMDD 240 (464)
Q Consensus 168 k~W~~l~~~~~f~~~r~~~--~~~~~~l~v~GG~~~~--~~~~~v~~yD~~t~~W~~l~~~--~~~-~R~~~s~~~~~~~ 240 (464)
.+|..+......+.+|..+ ...++.||++||.... ...+++++||+.+++|..+++. +|. .|..+++++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~ 230 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST 230 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence 6898876543222234332 3668999999997532 2346799999999999988752 232 3568899999999
Q ss_pred EEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCC---CCCccccEEEEecCCCccccccccCCCCCCccce
Q 046692 241 VYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASM---RYARSMPILGISEVSPEFSIIPCHQSHQDRRFPR 317 (464)
Q Consensus 241 IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m---~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~i 317 (464)
|||+||.++ . ...+++++|||.+++|+++++| |.+|..|++++++ ++ |
T Consensus 231 lYvfGG~~~---------~--~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~----------------~~--i 281 (470)
T PLN02193 231 LYVFGGRDA---------S--RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE----------------EN--V 281 (470)
T ss_pred EEEECCCCC---------C--CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC----------------CE--E
Confidence 999999532 1 3468899999999999999988 8899999988876 33 8
Q ss_pred EEecCcCCCCCCccccccceeeecCCCcccccCC----CCCCccceecccccccccccccCcEEEEEcCCCCCCCccCce
Q 046692 318 SRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLL----PNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSG 393 (464)
Q Consensus 318 yviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~v 393 (464)
|++||.++ ...++.++.||+.+++|+..+. +..+. .+++++++++||++||.++. .++++
T Consensus 282 Yv~GG~~~----~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~----------~~~~~~~~gkiyviGG~~g~--~~~dv 345 (470)
T PLN02193 282 YVFGGVSA----TARLKTLDSYNIVDKKWFHCSTPGDSFSIRG----------GAGLEVVQGKVWVVYGFNGC--EVDDV 345 (470)
T ss_pred EEECCCCC----CCCcceEEEEECCCCEEEeCCCCCCCCCCCC----------CcEEEEECCcEEEEECCCCC--ccCce
Confidence 99999864 3457789999999999998332 22221 13456788999999998653 36899
Q ss_pred EEEeCCCCcEEEeccC---CCCCCcceEEeEECCEEEEEeCC---------------CceEEEeCCCCcEEEcccC
Q 046692 394 EIYDSVSNKWMEIQRL---PVDFGVVSSGVVCNGIFYVYSET---------------DKLAGYDIERGFWIGIQTS 451 (464)
Q Consensus 394 evYD~~t~~W~~v~~~---p~~~~~~~~~v~~~g~lYViGG~---------------~~v~~YD~~~~~W~~l~~l 451 (464)
++||+.+++|+.++.+ |.++..++ +++++++|||+||. +.+++||+.+++|+.+..+
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~ 420 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKF 420 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccC
Confidence 9999999999999765 66666554 46899999999994 3689999999999999764
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=7.7e-30 Score=257.95 Aligned_cols=233 Identities=16% Similarity=0.167 Sum_probs=171.6
Q ss_pred CCCCeEEEeccccCCccccceEEeeC--CCCceeecccccc-CCCcceEEEEECCEEEEEcCCcCCccCccccCCCcccc
Q 046692 188 HQNPWLFLFGAVKDGYCSGEIHALDV--SQDQWHRIDASIL-KGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTH 264 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~v~~yD~--~t~~W~~l~~~~~-~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~ 264 (464)
..++.|||+||... +.++.||+ .+++|..+++ |+ .+|..+++++++++|||+||+... .........
T Consensus 15 ~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~-~p~~~R~~~~~~~~~~~iYv~GG~~~~-----~~~~~~~~~ 84 (346)
T TIGR03547 15 IIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIAD-FPGGPRNQAVAAAIDGKLYVFGGIGKA-----NSEGSPQVF 84 (346)
T ss_pred EECCEEEEEccccC----CeeEEEECCCCCCCceECCC-CCCCCcccceEEEECCEEEEEeCCCCC-----CCCCcceec
Confidence 67899999999632 56889996 6789999998 55 689999999999999999996320 000011246
Q ss_pred ceEEEEeCCCCCeeecC-CCCCCccccEEE-EecCCCccccccccCCCCCCccceEEecCcCCC-CC---------Cc--
Q 046692 265 KGVLVFSPLTKSWRKVA-SMRYARSMPILG-ISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDV-YE---------DP-- 330 (464)
Q Consensus 265 ~~v~vydp~t~~W~~l~-~m~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~-~~---------~~-- 330 (464)
+++|+|||.+++|+.++ +++.+|..++++ +++ +| ||++||.++. ++ +.
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~----------------g~--IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN----------------GQ--AYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcccceeEEEEeC----------------CE--EEEEcCcChHHHHHHHhhHhhcCccc
Confidence 78999999999999997 456666666555 444 33 8999997531 00 00
Q ss_pred ------------------cccccceeeecCCCcccc-cCCCC-CCccceecccccccccccccCcEEEEEcCCCCCCCcc
Q 046692 331 ------------------HRLSLRRQYRNSFDGFEG-SLLPN-RKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPL 390 (464)
Q Consensus 331 ------------------~~l~~ve~Ydp~~n~W~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l 390 (464)
..++.+++|||.+|+|+. .+||. ++.. +++++.+++||++||........
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~----------~~~~~~~~~iyv~GG~~~~~~~~ 216 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG----------SAIVHKGNKLLLINGEIKPGLRT 216 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCC----------ceEEEECCEEEEEeeeeCCCccc
Confidence 124789999999999999 66764 2322 34577899999999985432223
Q ss_pred CceEEEe--CCCCcEEEeccCCCCCCc-----c-eEEeEECCEEEEEeCCC-----------------------ceEEEe
Q 046692 391 DSGEIYD--SVSNKWMEIQRLPVDFGV-----V-SSGVVCNGIFYVYSETD-----------------------KLAGYD 439 (464)
Q Consensus 391 ~~vevYD--~~t~~W~~v~~~p~~~~~-----~-~~~v~~~g~lYViGG~~-----------------------~v~~YD 439 (464)
..+++|| +.+++|+.+++||.++.. . +.+++++|+|||+||.+ .+++||
T Consensus 217 ~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 296 (346)
T TIGR03547 217 AEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA 296 (346)
T ss_pred hheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE
Confidence 4566665 577899999999876421 1 22467899999999853 578999
Q ss_pred CCCCcEEEcccCCCCcccc
Q 046692 440 IERGFWIGIQTSPFPPRVI 458 (464)
Q Consensus 440 ~~~~~W~~l~~lp~pr~~~ 458 (464)
+++++|+.+++||.|+..+
T Consensus 297 ~~~~~W~~~~~lp~~~~~~ 315 (346)
T TIGR03547 297 LDNGKWSKVGKLPQGLAYG 315 (346)
T ss_pred ecCCcccccCCCCCCceee
Confidence 9999999999999887643
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=3e-29 Score=251.32 Aligned_cols=224 Identities=13% Similarity=0.148 Sum_probs=172.5
Q ss_pred cCCCCeEEEeccccCC----------ccccceEEee-CCC-CceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCc
Q 046692 187 LHQNPWLFLFGAVKDG----------YCSGEIHALD-VSQ-DQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFG 254 (464)
Q Consensus 187 ~~~~~~l~v~GG~~~~----------~~~~~v~~yD-~~t-~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~ 254 (464)
+..++.||++||.+.. ...++++.|+ +.. .+|..+++ +|.+|..++++++++.|||+||..+
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~-lp~~r~~~~~~~~~~~lyviGG~~~----- 83 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ-LPYEAAYGASVSVENGIYYIGGSNS----- 83 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc-CCccccceEEEEECCEEEEEcCCCC-----
Confidence 3578999999997632 1235778775 433 37999987 7889988888999999999999532
Q ss_pred cccCCCccccceEEEEeCCCCCe----eecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCc
Q 046692 255 RVDRSSFKTHKGVLVFSPLTKSW----RKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDP 330 (464)
Q Consensus 255 ~~~~~~~~~~~~v~vydp~t~~W----~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~ 330 (464)
....+++++||+.+++| +.+++||.+|..+++++++ ++ ||++||... .
T Consensus 84 ------~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~----------------~~--iYv~GG~~~----~ 135 (323)
T TIGR03548 84 ------SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD----------------GT--LYVGGGNRN----G 135 (323)
T ss_pred ------CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC----------------CE--EEEEeCcCC----C
Confidence 12467899999999998 7899999999999998887 33 899999642 3
Q ss_pred cccccceeeecCCCcccc-cCCCC-CCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEecc
Q 046692 331 HRLSLRRQYRNSFDGFEG-SLLPN-RKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQR 408 (464)
Q Consensus 331 ~~l~~ve~Ydp~~n~W~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~ 408 (464)
..++.+++||+.+++|+. .++|. ++.. +.+++.+++|||+||.+.. ...++++|||.+++|+.+++
T Consensus 136 ~~~~~v~~yd~~~~~W~~~~~~p~~~r~~----------~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 136 KPSNKSYLFNLETQEWFELPDFPGEPRVQ----------PVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred ccCceEEEEcCCCCCeeECCCCCCCCCCc----------ceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCC
Confidence 457889999999999998 55664 3322 3446789999999998642 24578999999999999987
Q ss_pred CCC---CCC--cceEEeEECCEEEEEeCC--------------------------------------CceEEEeCCCCcE
Q 046692 409 LPV---DFG--VVSSGVVCNGIFYVYSET--------------------------------------DKLAGYDIERGFW 445 (464)
Q Consensus 409 ~p~---~~~--~~~~~v~~~g~lYViGG~--------------------------------------~~v~~YD~~~~~W 445 (464)
|+. ++. ...++++.+++|||+||. +.+++||+.+++|
T Consensus 204 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 283 (323)
T TIGR03548 204 PTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKW 283 (323)
T ss_pred CCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCee
Confidence 642 322 222334558999999985 3599999999999
Q ss_pred EEcccCCC-Ccc
Q 046692 446 IGIQTSPF-PPR 456 (464)
Q Consensus 446 ~~l~~lp~-pr~ 456 (464)
+.++.+|. +|.
T Consensus 284 ~~~~~~p~~~r~ 295 (323)
T TIGR03548 284 KSIGNSPFFARC 295 (323)
T ss_pred eEcccccccccC
Confidence 99998873 454
No 11
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=1.4e-28 Score=251.44 Aligned_cols=252 Identities=18% Similarity=0.168 Sum_probs=177.8
Q ss_pred ccccccCCchHHHHHhhccCCCCeEEEeccccCCccccceEEeeCC--CCceeeccccccCCCcceEEEEECCEEEEEcC
Q 046692 169 KWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVS--QDQWHRIDASILKGRFMFSVVSIMDDVYVVGG 246 (464)
Q Consensus 169 ~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~~~~~~~~v~~yD~~--t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG 246 (464)
.+..++++|..... ......++.||++||... +.++.||+. +++|..+++++..+|..+++++++++|||+||
T Consensus 18 ~~~~l~~lP~~~~~-~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG 92 (376)
T PRK14131 18 NAEQLPDLPVPFKN-GTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGG 92 (376)
T ss_pred ecccCCCCCcCccC-CeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcC
Confidence 44555666642221 233467899999999633 357899986 47899999843468999999999999999999
Q ss_pred CcCCccCccccCCCccccceEEEEeCCCCCeeecCC-CCCCccccEEEE-ecCCCccccccccCCCCCCccceEEecCcC
Q 046692 247 CSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVAS-MRYARSMPILGI-SEVSPEFSIIPCHQSHQDRRFPRSRLGGVS 324 (464)
Q Consensus 247 ~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~-m~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~gk~~iyviGG~~ 324 (464)
+... .+.......+++++|||.+++|+.+++ +|.++..+++++ .+ + .||++||.+
T Consensus 93 ~~~~-----~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~----------------~--~IYv~GG~~ 149 (376)
T PRK14131 93 IGKT-----NSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHN----------------G--KAYITGGVN 149 (376)
T ss_pred CCCC-----CCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeC----------------C--EEEEECCCC
Confidence 6320 000011346789999999999999986 466666666655 44 3 389999975
Q ss_pred CC-CC-----------------------------CccccccceeeecCCCcccc-cCCCC-CCccceecccccccccccc
Q 046692 325 DV-YE-----------------------------DPHRLSLRRQYRNSFDGFEG-SLLPN-RKSYKFIRQKSDQSITKAS 372 (464)
Q Consensus 325 ~~-~~-----------------------------~~~~l~~ve~Ydp~~n~W~~-~~l~~-~~~~~~~~~~~~~~~~~~~ 372 (464)
.. +. +...++.+++|||.+|+|+. .++|. ++.+ ++++.
T Consensus 150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~----------~a~v~ 219 (376)
T PRK14131 150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG----------SAVVI 219 (376)
T ss_pred HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc----------ceEEE
Confidence 31 00 00124679999999999998 66664 3322 34567
Q ss_pred cCcEEEEEcCCCCCCCccCceE--EEeCCCCcEEEeccCCCCCCc------ceE-EeEECCEEEEEeCCC----------
Q 046692 373 KRFVLIAVGGLGSWDEPLDSGE--IYDSVSNKWMEIQRLPVDFGV------VSS-GVVCNGIFYVYSETD---------- 433 (464)
Q Consensus 373 ~~~~iyviGG~~~~~~~l~~ve--vYD~~t~~W~~v~~~p~~~~~------~~~-~v~~~g~lYViGG~~---------- 433 (464)
.+++||++||..........++ .||+.+++|+.+++||.++.. ..+ +++++++|||+||.+
T Consensus 220 ~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~ 299 (376)
T PRK14131 220 KGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQN 299 (376)
T ss_pred ECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhc
Confidence 8999999999743222233333 468899999999999876531 122 457899999999853
Q ss_pred -------------ceEEEeCCCCcEEEcccCCCCcccc
Q 046692 434 -------------KLAGYDIERGFWIGIQTSPFPPRVI 458 (464)
Q Consensus 434 -------------~v~~YD~~~~~W~~l~~lp~pr~~~ 458 (464)
.+++||+++++|+.++.||.||..+
T Consensus 300 ~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~ 337 (376)
T PRK14131 300 GKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG 337 (376)
T ss_pred CCcccccCCcceeehheEEecCCcccccCcCCCCccce
Confidence 3578999999999999999988654
No 12
>PLN02153 epithiospecifier protein
Probab=99.96 E-value=1.3e-28 Score=248.51 Aligned_cols=251 Identities=13% Similarity=0.179 Sum_probs=180.0
Q ss_pred chhhhhhccccccccccCCchHHHHH---hhccCCCCeEEEeccccCCccccceEEeeCCCCceeecccc----ccCCCc
Q 046692 158 TSLMNARLVCKKWRYLTTTPRFLQMR---REGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDAS----ILKGRF 230 (464)
Q Consensus 158 ~sl~~~~~vck~W~~l~~~~~f~~~r---~~~~~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~----~~~~R~ 230 (464)
.+++.+++..++|..++..+..+..+ ......++.||+|||.......+++++||+.+++|..++++ .|.+|.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 45678899999999877554322111 12236689999999987666678899999999999999762 278899
Q ss_pred ceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCC---CCccccEEEEecCCCcccccccc
Q 046692 231 MFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMR---YARSMPILGISEVSPEFSIIPCH 307 (464)
Q Consensus 231 ~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~---~~R~~~~~~~~~~~~~~~~~~~~ 307 (464)
.|++++.+++|||+||+..... .......+++++|||.+++|+.++++. .+|..+++++++
T Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~----------- 193 (341)
T PLN02153 130 FHSMASDENHVYVFGGVSKGGL-----MKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ----------- 193 (341)
T ss_pred eeEEEEECCEEEEECCccCCCc-----cCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEEC-----------
Confidence 9999999999999999642100 001123578999999999999998765 789999888876
Q ss_pred CCCCCCccceEEecCcCCCC----CCccccccceeeecCCCcccc-cC---CCCCCccceecccccccccccccCcEEEE
Q 046692 308 QSHQDRRFPRSRLGGVSDVY----EDPHRLSLRRQYRNSFDGFEG-SL---LPNRKSYKFIRQKSDQSITKASKRFVLIA 379 (464)
Q Consensus 308 ~~~~~gk~~iyviGG~~~~~----~~~~~l~~ve~Ydp~~n~W~~-~~---l~~~~~~~~~~~~~~~~~~~~~~~~~iyv 379 (464)
+| ||++||....+ .+...++.+++||+.+++|+. .. +|.++.. +++++.+++||+
T Consensus 194 -----~~--iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~----------~~~~~~~~~iyv 256 (341)
T PLN02153 194 -----GK--IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV----------FAHAVVGKYIII 256 (341)
T ss_pred -----Ce--EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce----------eeeEEECCEEEE
Confidence 33 89999864211 011236789999999999998 32 3433321 445788999999
Q ss_pred EcCCCC--------CCCccCceEEEeCCCCcEEEec-----cCCCCCCcceEEeEEC-CEEEEEeCC-------CceEEE
Q 046692 380 VGGLGS--------WDEPLDSGEIYDSVSNKWMEIQ-----RLPVDFGVVSSGVVCN-GIFYVYSET-------DKLAGY 438 (464)
Q Consensus 380 iGG~~~--------~~~~l~~vevYD~~t~~W~~v~-----~~p~~~~~~~~~v~~~-g~lYViGG~-------~~v~~Y 438 (464)
+||... .....+++++||+.+++|+.+. ++|..+..++++++.+ ++||++||. +++++|
T Consensus 257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~ 336 (341)
T PLN02153 257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFY 336 (341)
T ss_pred ECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEE
Confidence 999732 1123568999999999999985 4554443334444454 489999996 367777
Q ss_pred eCC
Q 046692 439 DIE 441 (464)
Q Consensus 439 D~~ 441 (464)
+..
T Consensus 337 ~~~ 339 (341)
T PLN02153 337 AVN 339 (341)
T ss_pred ecc
Confidence 653
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=4.3e-28 Score=247.82 Aligned_cols=257 Identities=17% Similarity=0.223 Sum_probs=179.2
Q ss_pred ccccccccCCchHHHHHhhccCCCCeEEEeccccC------CccccceEEeeCCCCceeeccccccCCCcceEEEE-ECC
Q 046692 167 CKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKD------GYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVS-IMD 239 (464)
Q Consensus 167 ck~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~~------~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~-~~~ 239 (464)
.++|..++..|...+........++.||++||... ...++++++||+.+++|..++++++.++..|++++ .++
T Consensus 61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~ 140 (376)
T PRK14131 61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNG 140 (376)
T ss_pred CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCC
Confidence 46898887765322222233477899999999764 12357899999999999999864566777777766 899
Q ss_pred EEEEEcCCcCCccCcc---------------------cc--CCCccccceEEEEeCCCCCeeecCCCCC-CccccEEEEe
Q 046692 240 DVYVVGGCSSLTSFGR---------------------VD--RSSFKTHKGVLVFSPLTKSWRKVASMRY-ARSMPILGIS 295 (464)
Q Consensus 240 ~IYVvGG~~gl~~~~~---------------------~~--~~~~~~~~~v~vydp~t~~W~~l~~m~~-~R~~~~~~~~ 295 (464)
+|||+||.++....+. +. .......+++++|||.+++|+.+++||. +|..++++++
T Consensus 141 ~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~ 220 (376)
T PRK14131 141 KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK 220 (376)
T ss_pred EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEE
Confidence 9999999643100000 00 0000124789999999999999999996 7888888777
Q ss_pred cCCCccccccccCCCCCCccceEEecCcCCCCCCccccccce--eeecCCCcccc-cCCCCCCccceecccccccccccc
Q 046692 296 EVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRR--QYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKAS 372 (464)
Q Consensus 296 ~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve--~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~ 372 (464)
+ +| ||++||... ...+...+. .||+..++|+. .+||.++.... ++....+.+++
T Consensus 221 ~----------------~~--iYv~GG~~~---~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~--~~~~~~~~a~~ 277 (376)
T PRK14131 221 G----------------NK--LWLINGEIK---PGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSS--QEGVAGAFAGY 277 (376)
T ss_pred C----------------CE--EEEEeeeEC---CCcCChhheEEEecCCCcceeecCCCCCCCcCCc--CCccceEecee
Confidence 6 33 899999643 112233333 45788899998 67776553211 01111123567
Q ss_pred cCcEEEEEcCCCCCC----------------CccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCC----
Q 046692 373 KRFVLIAVGGLGSWD----------------EPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET---- 432 (464)
Q Consensus 373 ~~~~iyviGG~~~~~----------------~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~---- 432 (464)
.+++||++||.+... .....+++||+.+++|+.+++||.++..+ ++++++++|||+||.
T Consensus 278 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~-~av~~~~~iyv~GG~~~~~ 356 (376)
T PRK14131 278 SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG-VSVSWNNGVLLIGGETAGG 356 (376)
T ss_pred ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccce-EEEEeCCEEEEEcCCCCCC
Confidence 899999999975211 01235789999999999999999988765 456899999999985
Q ss_pred ---CceEEEeCCCCcEEE
Q 046692 433 ---DKLAGYDIERGFWIG 447 (464)
Q Consensus 433 ---~~v~~YD~~~~~W~~ 447 (464)
+.|++|.++.+.|..
T Consensus 357 ~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 357 KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred cEeeeEEEEEEcCCEEEE
Confidence 379999999888765
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=4.2e-28 Score=245.22 Aligned_cols=243 Identities=18% Similarity=0.257 Sum_probs=168.6
Q ss_pred cccccccccCCchHHHHHhhccCCCCeEEEeccccCC------ccccceEEeeCCCCceeeccccccCCCcceEEE-EEC
Q 046692 166 VCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDG------YCSGEIHALDVSQDQWHRIDASILKGRFMFSVV-SIM 238 (464)
Q Consensus 166 vck~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~~~------~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~-~~~ 238 (464)
..++|..++.+|...+........++.||++||.... ...+++++|||.+++|+.++.+++.+|..++++ +++
T Consensus 39 ~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~ 118 (346)
T TIGR03547 39 PSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN 118 (346)
T ss_pred CCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeC
Confidence 5678999988763222222334778999999997532 145789999999999999985466777777766 789
Q ss_pred CEEEEEcCCcCCc------cCccccCC-----------------CccccceEEEEeCCCCCeeecCCCCC-CccccEEEE
Q 046692 239 DDVYVVGGCSSLT------SFGRVDRS-----------------SFKTHKGVLVFSPLTKSWRKVASMRY-ARSMPILGI 294 (464)
Q Consensus 239 ~~IYVvGG~~gl~------~~~~~~~~-----------------~~~~~~~v~vydp~t~~W~~l~~m~~-~R~~~~~~~ 294 (464)
++|||+||.++.. ....++.. .....+++++|||.+++|+.+++||. +|..+++++
T Consensus 119 g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~ 198 (346)
T TIGR03547 119 GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVH 198 (346)
T ss_pred CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEE
Confidence 9999999964310 00000000 00113789999999999999999996 688888888
Q ss_pred ecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeee--cCCCcccc-cCCCCCCccceeccccccccccc
Q 046692 295 SEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYR--NSFDGFEG-SLLPNRKSYKFIRQKSDQSITKA 371 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Yd--p~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~ 371 (464)
++ +| ||++||... .......++.|+ +.+++|+. .+|+.++... +.....+.++
T Consensus 199 ~~----------------~~--iyv~GG~~~---~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~---~~~~~~~~a~ 254 (346)
T TIGR03547 199 KG----------------NK--LLLINGEIK---PGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS---QEGLAGAFAG 254 (346)
T ss_pred EC----------------CE--EEEEeeeeC---CCccchheEEEEecCCCceeeecCCCCCCCCCc---cccccEEeee
Confidence 76 33 899999753 112234455565 57779998 7776653210 0000113356
Q ss_pred ccCcEEEEEcCCCCCC----------------CccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCCC
Q 046692 372 SKRFVLIAVGGLGSWD----------------EPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETD 433 (464)
Q Consensus 372 ~~~~~iyviGG~~~~~----------------~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~ 433 (464)
+.+++||++||..... ..+.++++||+.+++|+.+++||.++..+ ++++++++|||+||.+
T Consensus 255 ~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~-~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 255 ISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYG-VSVSWNNGVLLIGGEN 331 (346)
T ss_pred EECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceee-EEEEcCCEEEEEeccC
Confidence 7899999999975210 11347899999999999999999887554 4568899999999864
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=1.1e-27 Score=240.05 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=164.8
Q ss_pred ccccccCCchHHHHHhhccCCCCeEEEeccccCCccccceEEeeCCCCce----eeccccccCCCcceEEEEECCEEEEE
Q 046692 169 KWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQW----HRIDASILKGRFMFSVVSIMDDVYVV 244 (464)
Q Consensus 169 ~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W----~~l~~~~~~~R~~~s~~~~~~~IYVv 244 (464)
+|..+..+|.... .......++.||++||.......+++++||+.+++| ..+++ +|.+|..|++++++++|||+
T Consensus 52 ~W~~~~~lp~~r~-~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~-lp~~~~~~~~~~~~~~iYv~ 129 (323)
T TIGR03548 52 KWVKDGQLPYEAA-YGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGN-LPFTFENGSACYKDGTLYVG 129 (323)
T ss_pred eEEEcccCCcccc-ceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCC-CCcCccCceEEEECCEEEEE
Confidence 6888877664221 112336689999999987666678999999999998 67776 78899999999999999999
Q ss_pred cCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCC-CCccccEEEEecCCCccccccccCCCCCCccceEEecCc
Q 046692 245 GGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMR-YARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGV 323 (464)
Q Consensus 245 GG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~ 323 (464)
||.. +. ...+++++|||.+++|+.+++|| .+|..+++++++ ++ ||++||.
T Consensus 130 GG~~--------~~---~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~----------------~~--iYv~GG~ 180 (323)
T TIGR03548 130 GGNR--------NG---KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQ----------------NE--LYVFGGG 180 (323)
T ss_pred eCcC--------CC---ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEEC----------------CE--EEEEcCC
Confidence 9942 11 24678999999999999999988 488888887776 33 8999997
Q ss_pred CCCCCCccccccceeeecCCCcccc-cCCCCCCccceeccccc-ccccccccCcEEEEEcCCCCCC--------------
Q 046692 324 SDVYEDPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSD-QSITKASKRFVLIAVGGLGSWD-------------- 387 (464)
Q Consensus 324 ~~~~~~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~-~~~~~~~~~~~iyviGG~~~~~-------------- 387 (464)
++ .....+++|||.+++|+. .+++.... ++.. ..+++++.+++||++||.+...
T Consensus 181 ~~-----~~~~~~~~yd~~~~~W~~~~~~~~~~~-----p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 250 (323)
T TIGR03548 181 SN-----IAYTDGYKYSPKKNQWQKVADPTTDSE-----PISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDE 250 (323)
T ss_pred CC-----ccccceEEEecCCCeeEECCCCCCCCC-----ceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccch
Confidence 54 223457899999999998 44431110 0000 1123455678999999985320
Q ss_pred -----------------CccCceEEEeCCCCcEEEeccCCC-CCCcceEEeEECCEEEEEeCC
Q 046692 388 -----------------EPLDSGEIYDSVSNKWMEIQRLPV-DFGVVSSGVVCNGIFYVYSET 432 (464)
Q Consensus 388 -----------------~~l~~vevYD~~t~~W~~v~~~p~-~~~~~~~~v~~~g~lYViGG~ 432 (464)
...+++++||+.+++|+.++++|. ++..+ ++++++++||++||.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~-~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 251 SLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGA-ALLLTGNNIFSINGE 312 (323)
T ss_pred hhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCch-heEEECCEEEEEecc
Confidence 113679999999999999998874 44443 356899999999985
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=253.73 Aligned_cols=222 Identities=18% Similarity=0.276 Sum_probs=176.8
Q ss_pred CCeEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEE
Q 046692 190 NPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLV 269 (464)
Q Consensus 190 ~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~v 269 (464)
...+++.||... ....+..|++.+++|..+++ ++ .+..|+++++++.|||+||..+ . ....+++++
T Consensus 250 ~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~lyv~GG~~~---------~-~~~~~~v~~ 315 (534)
T PHA03098 250 GSIIYIHITMSI--FTYNYITNYSPLSEINTIID-IH-YVYCFGSVVLNNVIYFIGGMNK---------N-NLSVNSVVS 315 (534)
T ss_pred CcceEeecccch--hhceeeecchhhhhcccccC-cc-ccccceEEEECCEEEEECCCcC---------C-CCeeccEEE
Confidence 345555555431 23346678999999999876 33 3455789999999999999532 1 134578999
Q ss_pred EeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCcccc-
Q 046692 270 FSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG- 348 (464)
Q Consensus 270 ydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~- 348 (464)
||+.+++|..+++|+.+|..+++++++ + .||++||.++ ...++++++|||.+++|+.
T Consensus 316 yd~~~~~W~~~~~~~~~R~~~~~~~~~----------------~--~lyv~GG~~~----~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 316 YDTKTKSWNKVPELIYPRKNPGVTVFN----------------N--RIYVIGGIYN----SISLNTVESWKPGESKWREE 373 (534)
T ss_pred EeCCCCeeeECCCCCcccccceEEEEC----------------C--EEEEEeCCCC----CEecceEEEEcCCCCceeeC
Confidence 999999999999999999999998886 3 3899999753 4567889999999999999
Q ss_pred cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEE
Q 046692 349 SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYV 428 (464)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYV 428 (464)
.++|.++.. +++++.+++||++||.......++++++|||.+++|+.+++||.++..++ +++++++||+
T Consensus 374 ~~lp~~r~~----------~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~iyv 442 (534)
T PHA03098 374 PPLIFPRYN----------PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC-AIYHDGKIYV 442 (534)
T ss_pred CCcCcCCcc----------ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce-EEEECCEEEE
Confidence 777766533 34567899999999975544457899999999999999999998877654 4688999999
Q ss_pred EeCC---------CceEEEeCCCCcEEEcccCCCCcccc
Q 046692 429 YSET---------DKLAGYDIERGFWIGIQTSPFPPRVI 458 (464)
Q Consensus 429 iGG~---------~~v~~YD~~~~~W~~l~~lp~pr~~~ 458 (464)
+||. +.+++||+.+++|+.++++|.||..+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~ 481 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA 481 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc
Confidence 9984 24999999999999999999887643
No 17
>PLN02193 nitrile-specifier protein
Probab=99.95 E-value=4.6e-26 Score=239.04 Aligned_cols=226 Identities=16% Similarity=0.189 Sum_probs=169.4
Q ss_pred CCCeEEEeccccCCccccc--eEEeeCCC----Cceeecccc--ccCCCcceEEEEECCEEEEEcCCcCCccCccccCCC
Q 046692 189 QNPWLFLFGAVKDGYCSGE--IHALDVSQ----DQWHRIDAS--ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSS 260 (464)
Q Consensus 189 ~~~~l~v~GG~~~~~~~~~--v~~yD~~t----~~W~~l~~~--~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~ 260 (464)
.++.|+.|.|..... .+. ++.++|.+ ++|.+++++ +|.+|..|+++++++.|||+||... ..
T Consensus 119 ~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~---------~~ 188 (470)
T PLN02193 119 QGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFT---------PN 188 (470)
T ss_pred cCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCC---------CC
Confidence 467788888865432 333 44557655 899998763 5789999999999999999999521 11
Q ss_pred ccccceEEEEeCCCCCeeecCCC---CC-CccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccc
Q 046692 261 FKTHKGVLVFSPLTKSWRKVASM---RY-ARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLR 336 (464)
Q Consensus 261 ~~~~~~v~vydp~t~~W~~l~~m---~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~v 336 (464)
....+++++||+.+++|..++++ |. +|..+++++++ + .||++||.++ ...++.+
T Consensus 189 ~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~----------------~--~lYvfGG~~~----~~~~ndv 246 (470)
T PLN02193 189 QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG----------------S--TLYVFGGRDA----SRQYNGF 246 (470)
T ss_pred CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC----------------C--EEEEECCCCC----CCCCccE
Confidence 12346799999999999988754 33 24567777776 2 3899999754 3467889
Q ss_pred eeeecCCCcccc-cCC---CCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEecc---C
Q 046692 337 RQYRNSFDGFEG-SLL---PNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQR---L 409 (464)
Q Consensus 337 e~Ydp~~n~W~~-~~l---~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~---~ 409 (464)
++||+.+++|+. .++ |.++.. +++++.+++||++||.+.. ..++++++||+.+++|+.++. +
T Consensus 247 ~~yD~~t~~W~~l~~~~~~P~~R~~----------h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~ 315 (470)
T PLN02193 247 YSFDTTTNEWKLLTPVEEGPTPRSF----------HSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDS 315 (470)
T ss_pred EEEECCCCEEEEcCcCCCCCCCccc----------eEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCC
Confidence 999999999998 454 333322 3456789999999998653 457789999999999999864 4
Q ss_pred CCCCCcceEEeEECCEEEEEeCC-----CceEEEeCCCCcEEEcccC---CCCcccc
Q 046692 410 PVDFGVVSSGVVCNGIFYVYSET-----DKLAGYDIERGFWIGIQTS---PFPPRVI 458 (464)
Q Consensus 410 p~~~~~~~~~v~~~g~lYViGG~-----~~v~~YD~~~~~W~~l~~l---p~pr~~~ 458 (464)
|.++..+. +++++++||++||. +.+++||+.+++|+.++.+ |.||..|
T Consensus 316 ~~~R~~~~-~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 316 FSIRGGAG-LEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred CCCCCCcE-EEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 55555553 45789999999984 5799999999999999765 6666544
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=244.36 Aligned_cols=188 Identities=18% Similarity=0.241 Sum_probs=153.0
Q ss_pred hhhhccccccccccCCchHHHHHhhccCCCCeEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEECCE
Q 046692 161 MNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDD 240 (464)
Q Consensus 161 ~~~~~vck~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~ 240 (464)
.++++..++|..+++++... ........++.||++||.... +.+..|||.+++|..+++ |+.+|..+++++++++
T Consensus 290 ~~Ydp~~~~W~~~~~m~~~r-~~~~~v~~~~~iYviGG~~~~---~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~~~g~ 364 (480)
T PHA02790 290 IAVNYISNNWIPIPPMNSPR-LYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAWVNMPS-LLKPRCNPAVASINNV 364 (480)
T ss_pred EEEECCCCEEEECCCCCchh-hcceEEEECCEEEEECCcCCC---CceEEEECCCCeEEECCC-CCCCCcccEEEEECCE
Confidence 34677777899888876521 112234678999999997532 468999999999999998 8899999999999999
Q ss_pred EEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEe
Q 046692 241 VYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRL 320 (464)
Q Consensus 241 IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyvi 320 (464)
|||+||..+ ..+.+++|||.+++|+.+++|+.+|..+++++++ |+ ||++
T Consensus 365 IYviGG~~~-------------~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~----------------~~--IYv~ 413 (480)
T PHA02790 365 IYVIGGHSE-------------TDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFG----------------RR--LFLV 413 (480)
T ss_pred EEEecCcCC-------------CCccEEEEeCCCCEEEeCCCCCCccccceEEEEC----------------CE--EEEE
Confidence 999999421 1357899999999999999999999999888887 33 8999
Q ss_pred cCcCCCCCCccccccceeeecCCCcccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCC
Q 046692 321 GGVSDVYEDPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSV 399 (464)
Q Consensus 321 GG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~ 399 (464)
||. ++.|||.+|+|+. ++|+.++.. +++++++++||++||.++. ..++++++|||.
T Consensus 414 GG~------------~e~ydp~~~~W~~~~~m~~~r~~----------~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~ 470 (480)
T PHA02790 414 GRN------------AEFYCESSNTWTLIDDPIYPRDN----------PELIIVDNKLLLIGGFYRG-SYIDTIEVYNNR 470 (480)
T ss_pred CCc------------eEEecCCCCcEeEcCCCCCCccc----------cEEEEECCEEEEECCcCCC-cccceEEEEECC
Confidence 983 4789999999999 777766543 4567899999999998643 346789999999
Q ss_pred CCcEEEec
Q 046692 400 SNKWMEIQ 407 (464)
Q Consensus 400 t~~W~~v~ 407 (464)
+|+|+.+.
T Consensus 471 ~~~W~~~~ 478 (480)
T PHA02790 471 TYSWNIWD 478 (480)
T ss_pred CCeEEecC
Confidence 99998763
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.90 E-value=5.1e-23 Score=190.36 Aligned_cols=232 Identities=18% Similarity=0.227 Sum_probs=174.7
Q ss_pred CCCCeEEEeccccCC-----ccccceEEeeCCCCceeecccc------------ccCCCcceEEEEECCEEEEEcCCcCC
Q 046692 188 HQNPWLFLFGAVKDG-----YCSGEIHALDVSQDQWHRIDAS------------ILKGRFMFSVVSIMDDVYVVGGCSSL 250 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~-----~~~~~v~~yD~~t~~W~~l~~~------------~~~~R~~~s~~~~~~~IYVvGG~~gl 250 (464)
..+..||-|||+..+ ...-+++++|..+-+|.++|+- .|..|++|+++.+++++||.||.+.
T Consensus 21 aVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND- 99 (392)
T KOG4693|consen 21 AVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRND- 99 (392)
T ss_pred eecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccC-
Confidence 678999999997643 2334789999999999998871 2456999999999999999999642
Q ss_pred ccCccccCCCccccceEEEEeCCCCCeeecC---CCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCC
Q 046692 251 TSFGRVDRSSFKTHKGVLVFSPLTKSWRKVA---SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVY 327 (464)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~---~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~ 327 (464)
.....+-++.|||.|++|.+.. -.|-+|..|++++.++. +|+|||+...
T Consensus 100 ---------~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~------------------MyiFGGye~~- 151 (392)
T KOG4693|consen 100 ---------DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ------------------MYIFGGYEED- 151 (392)
T ss_pred ---------cccccceeeeeccccccccccceeeecCCccCCceeeEECcE------------------EEEecChHHH-
Confidence 1246778999999999998743 47889999999999743 8999997541
Q ss_pred CCccccccceeeecCCCcccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCC--------CccCceEEEeC
Q 046692 328 EDPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWD--------EPLDSGEIYDS 398 (464)
Q Consensus 328 ~~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~--------~~l~~vevYD~ 398 (464)
-....+.+..+|..+-+|+. .....+..| ..-++++++++.+|++||+.... .+-+.+..+|.
T Consensus 152 -a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw-------RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~ 223 (392)
T KOG4693|consen 152 -AQRFSQDTHVLDFATMTWREMHTKGDPPRW-------RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL 223 (392)
T ss_pred -HHhhhccceeEeccceeeeehhccCCCchh-------hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec
Confidence 23445677889999999998 211111111 11156778889999999985432 23567888999
Q ss_pred CCCcEEEecc---CCCCCCcceEEeEECCEEEEEeCC--------CceEEEeCCCCcEEEccc---CCCCccc
Q 046692 399 VSNKWMEIQR---LPVDFGVVSSGVVCNGIFYVYSET--------DKLAGYDIERGFWIGIQT---SPFPPRV 457 (464)
Q Consensus 399 ~t~~W~~v~~---~p~~~~~~~~~v~~~g~lYViGG~--------~~v~~YD~~~~~W~~l~~---lp~pr~~ 457 (464)
.|..|...++ .|..++.+ ++.+.|++||++||+ +.+++|||.+..|..|.. -|.+|+.
T Consensus 224 ~T~aW~r~p~~~~~P~GRRSH-S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRR 295 (392)
T KOG4693|consen 224 ATGAWTRTPENTMKPGGRRSH-STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRR 295 (392)
T ss_pred cccccccCCCCCcCCCccccc-ceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccc
Confidence 9999998754 34445444 456899999999996 489999999999998854 5666653
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.90 E-value=5.1e-23 Score=190.34 Aligned_cols=207 Identities=16% Similarity=0.248 Sum_probs=160.5
Q ss_pred CCCCeEEEeccccC-CccccceEEeeCCCCceeeccc--cccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCcccc
Q 046692 188 HQNPWLFLFGAVKD-GYCSGEIHALDVSQDQWHRIDA--SILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTH 264 (464)
Q Consensus 188 ~~~~~l~v~GG~~~-~~~~~~v~~yD~~t~~W~~l~~--~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~ 264 (464)
..++.+|+.||.++ ....+.+++|||.+++|.+..- ..|..|.+|+++++++.+||+||+ .......+
T Consensus 86 ~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGy---------e~~a~~FS 156 (392)
T KOG4693|consen 86 EYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGY---------EEDAQRFS 156 (392)
T ss_pred EEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecCh---------HHHHHhhh
Confidence 56799999999886 4567789999999999987543 568899999999999999999995 33334567
Q ss_pred ceEEEEeCCCCCeeecC---CCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCC---CCCcc--ccccc
Q 046692 265 KGVLVFSPLTKSWRKVA---SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDV---YEDPH--RLSLR 336 (464)
Q Consensus 265 ~~v~vydp~t~~W~~l~---~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~---~~~~~--~l~~v 336 (464)
+++.++|..|-+|+.+- ..|.-|..|++.+++ + .+|+|||+.+. |+..+ .-+.+
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~----------------~--~MYiFGGR~D~~gpfHs~~e~Yc~~i 218 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID----------------G--MMYIFGGRSDESGPFHSIHEQYCDTI 218 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhcc----------------c--eEEEeccccccCCCccchhhhhccee
Confidence 89999999999999875 455667888887776 2 38999998653 33322 23456
Q ss_pred eeeecCCCccccc----CCCCC-CccceecccccccccccccCcEEEEEcCCCCC-CCccCceEEEeCCCCcEEEec---
Q 046692 337 RQYRNSFDGFEGS----LLPNR-KSYKFIRQKSDQSITKASKRFVLIAVGGLGSW-DEPLDSGEIYDSVSNKWMEIQ--- 407 (464)
Q Consensus 337 e~Ydp~~n~W~~~----~l~~~-~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~-~~~l~~vevYD~~t~~W~~v~--- 407 (464)
..+|..+..|... ..|.. ++ +++-+++++||++||+.+. +..++++++|||.+..|..|.
T Consensus 219 ~~ld~~T~aW~r~p~~~~~P~GRRS-----------HS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~G 287 (392)
T KOG4693|consen 219 MALDLATGAWTRTPENTMKPGGRRS-----------HSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRG 287 (392)
T ss_pred EEEeccccccccCCCCCcCCCcccc-----------cceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccC
Confidence 6789999999982 12222 23 3456899999999999654 355889999999999999994
Q ss_pred cCCCCCCcceEEeEECCEEEEEeCCC
Q 046692 408 RLPVDFGVVSSGVVCNGIFYVYSETD 433 (464)
Q Consensus 408 ~~p~~~~~~~~~v~~~g~lYViGG~~ 433 (464)
.-|.+++..|+ ++.++++|++||+.
T Consensus 288 k~P~aRRRqC~-~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 288 KYPSARRRQCS-VVSGGKVYLFGGTS 312 (392)
T ss_pred CCCCcccceeE-EEECCEEEEecCCC
Confidence 35666777665 58999999999974
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=190.74 Aligned_cols=223 Identities=17% Similarity=0.264 Sum_probs=179.6
Q ss_pred CCCCeEEEeccccCCccccc--eEEeeCCCCceeeccc--cccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccc
Q 046692 188 HQNPWLFLFGAVKDGYCSGE--IHALDVSQDQWHRIDA--SILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKT 263 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~--v~~yD~~t~~W~~l~~--~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~ 263 (464)
...+.+|+|||......... +|.+|..+..|...+. ..|.+|.+|++++++++||++||+.. ....
T Consensus 68 ~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~----------~~~~ 137 (482)
T KOG0379|consen 68 LIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK----------KYRN 137 (482)
T ss_pred EECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC----------CCCC
Confidence 45899999999876554444 9999999999988765 34679999999999999999999531 1234
Q ss_pred cceEEEEeCCCCCeeecC---CCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeee
Q 046692 264 HKGVLVFSPLTKSWRKVA---SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYR 340 (464)
Q Consensus 264 ~~~v~vydp~t~~W~~l~---~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Yd 340 (464)
.++++.||+.|++|+.+. .+|.+|..|++++++. +||++||... ....++.+++||
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~------------------~l~vfGG~~~---~~~~~ndl~i~d 196 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGT------------------KLVVFGGIGG---TGDSLNDLHIYD 196 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECC------------------EEEEECCccC---cccceeeeeeec
Confidence 789999999999999865 4688999999999873 3999999865 223789999999
Q ss_pred cCCCccccc----CCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEec---cCCCCC
Q 046692 341 NSFDGFEGS----LLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQ---RLPVDF 413 (464)
Q Consensus 341 p~~n~W~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~---~~p~~~ 413 (464)
+.+.+|... +.|.++ ..+++++.+++++++||....+..+++++++|..+..|..+. .+|.++
T Consensus 197 ~~~~~W~~~~~~g~~P~pR----------~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R 266 (482)
T KOG0379|consen 197 LETSTWSELDTQGEAPSPR----------YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR 266 (482)
T ss_pred cccccceecccCCCCCCCC----------CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc
Confidence 999999982 233322 225678899999999999855578999999999999999764 466677
Q ss_pred CcceEEeEECCEEEEEeCC--------CceEEEeCCCCcEEEcccCC
Q 046692 414 GVVSSGVVCNGIFYVYSET--------DKLAGYDIERGFWIGIQTSP 452 (464)
Q Consensus 414 ~~~~~~v~~~g~lYViGG~--------~~v~~YD~~~~~W~~l~~lp 452 (464)
..+.. ++.+..++++||. ..++.||+++..|..+...+
T Consensus 267 ~~h~~-~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 267 SGHSL-TVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ceeee-EEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 77654 4889999999974 25788999999999987755
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.81 E-value=4.8e-19 Score=172.83 Aligned_cols=232 Identities=14% Similarity=0.176 Sum_probs=173.2
Q ss_pred CCCCeEEEecccc-CC---ccccceEEeeCCCCceeeccc-cccCCCcceEEEEE-CCEEEEEcCCcCCccCccccCCCc
Q 046692 188 HQNPWLFLFGAVK-DG---YCSGEIHALDVSQDQWHRIDA-SILKGRFMFSVVSI-MDDVYVVGGCSSLTSFGRVDRSSF 261 (464)
Q Consensus 188 ~~~~~l~v~GG~~-~~---~~~~~v~~yD~~t~~W~~l~~-~~~~~R~~~s~~~~-~~~IYVvGG~~gl~~~~~~~~~~~ 261 (464)
...+-|++|||.- ++ ..-++++.||..+++|.++.+ ..|.||+.|.++++ .|.+|++||.. .+-+...+
T Consensus 76 PekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEf-----aSPnq~qF 150 (521)
T KOG1230|consen 76 PEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEF-----ASPNQEQF 150 (521)
T ss_pred cCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecccc-----CCcchhhh
Confidence 4456899999943 22 355789999999999999865 35789999987777 49999999952 22344556
Q ss_pred cccceEEEEeCCCCCeeecC--CCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceee
Q 046692 262 KTHKGVLVFSPLTKSWRKVA--SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQY 339 (464)
Q Consensus 262 ~~~~~v~vydp~t~~W~~l~--~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Y 339 (464)
...+++|+||..|++|+++. --|.||+.|-+++... .|++|||+-+.-.+.+..+.+++|
T Consensus 151 ~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~------------------~lilFGGFhd~nr~y~YyNDvy~F 212 (521)
T KOG1230|consen 151 HHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKR------------------QLILFGGFHDSNRDYIYYNDVYAF 212 (521)
T ss_pred hhhhheeeeeeccchheeeccCCCCCCCccceeEEeee------------------eEEEEcceecCCCceEEeeeeEEE
Confidence 77899999999999999975 4688999999999862 389999975443455778999999
Q ss_pred ecCCCcccccCCCCCCccceeccccccccccccc-CcEEEEEcCCCCC--------CCccCceEEEeCCC-----CcEEE
Q 046692 340 RNSFDGFEGSLLPNRKSYKFIRQKSDQSITKASK-RFVLIAVGGLGSW--------DEPLDSGEIYDSVS-----NKWME 405 (464)
Q Consensus 340 dp~~n~W~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~iyviGG~~~~--------~~~l~~vevYD~~t-----~~W~~ 405 (464)
|..+-+|+....+.+ ...+++ .+++++. .+.|||.||+... ....++++..+|+. =.|+.
T Consensus 213 dLdtykW~Klepsga----~PtpRS--Gcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 213 DLDTYKWSKLEPSGA----GPTPRS--GCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK 286 (521)
T ss_pred eccceeeeeccCCCC----CCCCCC--cceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence 999999998222221 011111 1334444 8999999998421 13467899999988 47888
Q ss_pred ecc---CCCCCCcceEEeEECCEEEEEeCC---------------CceEEEeCCCCcEEEc
Q 046692 406 IQR---LPVDFGVVSSGVVCNGIFYVYSET---------------DKLAGYDIERGFWIGI 448 (464)
Q Consensus 406 v~~---~p~~~~~~~~~v~~~g~lYViGG~---------------~~v~~YD~~~~~W~~l 448 (464)
+.+ -|.+|..++.++.-|++-|.+||. |.++.||...++|...
T Consensus 287 vkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 287 VKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 855 355777766666678899999983 5899999999999865
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=174.30 Aligned_cols=194 Identities=21% Similarity=0.203 Sum_probs=151.1
Q ss_pred ccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecC---CCCCCccccEEEEecCCCcc
Q 046692 225 ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVA---SMRYARSMPILGISEVSPEF 301 (464)
Q Consensus 225 ~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~---~m~~~R~~~~~~~~~~~~~~ 301 (464)
.|.+|..|+++.+++++||+||.... + .....+++++|..+..|...+ ..|.+|+.+.+++++.
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~------~---~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~---- 123 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSG------D---RLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGD---- 123 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCC------C---ccccceeEEeecCCcccccccccCCCCCcccceeEEEECC----
Confidence 57789999999999999999996421 1 011116999999999998754 4678999999999873
Q ss_pred ccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCcccc-c---CCCCCCccceecccccccccccccCcEE
Q 046692 302 SIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-S---LLPNRKSYKFIRQKSDQSITKASKRFVL 377 (464)
Q Consensus 302 ~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~---~l~~~~~~~~~~~~~~~~~~~~~~~~~i 377 (464)
.||+|||.+. ....++.+..||+.+++|+. . ..|..+ .++++++++.+|
T Consensus 124 --------------~l~lfGG~~~---~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r----------~~Hs~~~~g~~l 176 (482)
T KOG0379|consen 124 --------------KLYLFGGTDK---KYRNLNELHSLDLSTRTWSLLSPTGDPPPPR----------AGHSATVVGTKL 176 (482)
T ss_pred --------------eEEEEccccC---CCCChhheEeccCCCCcEEEecCcCCCCCCc----------ccceEEEECCEE
Confidence 3999999864 13447889999999999997 2 222222 124567788999
Q ss_pred EEEcCCCCCCCccCceEEEeCCCCcEEEec---cCCCCCCcceEEeEECCEEEEEeCC-------CceEEEeCCCCcEEE
Q 046692 378 IAVGGLGSWDEPLDSGEIYDSVSNKWMEIQ---RLPVDFGVVSSGVVCNGIFYVYSET-------DKLAGYDIERGFWIG 447 (464)
Q Consensus 378 yviGG~~~~~~~l~~vevYD~~t~~W~~v~---~~p~~~~~~~~~v~~~g~lYViGG~-------~~v~~YD~~~~~W~~ 447 (464)
||+||.+.....++++++||+++.+|.++. ..|.+|..+. +++++++++|+||. ++++.+|+.+.+|..
T Consensus 177 ~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~-~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~ 255 (482)
T KOG0379|consen 177 VVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHA-MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKL 255 (482)
T ss_pred EEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCce-EEEECCeEEEEeccccCCceecceEeeecccceeee
Confidence 999999876557999999999999999983 4555676664 46899999999874 489999999999997
Q ss_pred cc---cCCCCccccc
Q 046692 448 IQ---TSPFPPRVIE 459 (464)
Q Consensus 448 l~---~lp~pr~~~~ 459 (464)
+. .+|.||..|.
T Consensus 256 ~~~~g~~p~~R~~h~ 270 (482)
T KOG0379|consen 256 LPTGGDLPSPRSGHS 270 (482)
T ss_pred ccccCCCCCCcceee
Confidence 65 3677777664
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.76 E-value=3.4e-18 Score=170.26 Aligned_cols=239 Identities=18% Similarity=0.293 Sum_probs=165.9
Q ss_pred cccccccCCch-HHHHHhhc--cCCCCeEEEeccccCCccccceEEeeCCCCceeeccc--cccCCCcceEEEEECCEEE
Q 046692 168 KKWRYLTTTPR-FLQMRREG--LHQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDA--SILKGRFMFSVVSIMDDVY 242 (464)
Q Consensus 168 k~W~~l~~~~~-f~~~r~~~--~~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~--~~~~~R~~~s~~~~~~~IY 242 (464)
-+|+.+..... .++.|..+ ....+.|++|||-+++ ..++++.||..+|+|..-+. ..|.+...|+++..+++||
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtril 95 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRIL 95 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEE
Confidence 35776654322 12222222 2678899999997655 56789999999999986543 4677888899999999999
Q ss_pred EEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecC-------CCCCCccccEEEEecCCCccccccccCCCCCCcc
Q 046692 243 VVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVA-------SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRF 315 (464)
Q Consensus 243 VvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~-------~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~ 315 (464)
||||.. .++ ++.++++-.....-.|+++. ++|.||..|++.++++ |
T Consensus 96 vFGGMv---EYG-------kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn----------------K- 148 (830)
T KOG4152|consen 96 VFGGMV---EYG-------KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN----------------K- 148 (830)
T ss_pred EEccEe---eec-------cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEecc----------------E-
Confidence 999942 222 34566655554555677764 4688999999998873 2
Q ss_pred ceEEecCcCCCCCCc-----cccccceeeecCCC----cccc----cCCCCCC-ccceeccccccccccccc------Cc
Q 046692 316 PRSRLGGVSDVYEDP-----HRLSLRRQYRNSFD----GFEG----SLLPNRK-SYKFIRQKSDQSITKASK------RF 375 (464)
Q Consensus 316 ~iyviGG~~~~~~~~-----~~l~~ve~Ydp~~n----~W~~----~~l~~~~-~~~~~~~~~~~~~~~~~~------~~ 375 (464)
.|+|||.....+|+ ++++..+..+..-. .|+. ..+|.++ +|. ++.+ ..
T Consensus 149 -cYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHT-----------AViY~eKDs~~s 216 (830)
T KOG4152|consen 149 -CYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHT-----------AVIYTEKDSKKS 216 (830)
T ss_pred -eEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccce-----------eEEEEeccCCcc
Confidence 79999976543333 34555554433322 3776 2333333 332 2333 45
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCcEEEec---cCCCCCCcceEEeEECCEEEEEeCC--------------------
Q 046692 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQ---RLPVDFGVVSSGVVCNGIFYVYSET-------------------- 432 (464)
Q Consensus 376 ~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~---~~p~~~~~~~~~v~~~g~lYViGG~-------------------- 432 (464)
++||+||+.+ -.+.++|..|+++-+|.+.. -.|.+|..|.+ ++++++||||||-
T Consensus 217 kmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa-~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCT 293 (830)
T KOG4152|consen 217 KMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSA-TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCT 293 (830)
T ss_pred eEEEEccccc--ccccceeEEecceeecccccccCCCCCCcccccc-eeecceeEEecceeeeeccccccccccceeeec
Confidence 8999999977 46899999999999999872 24556777754 5899999999982
Q ss_pred CceEEEeCCCCcEEEcc
Q 046692 433 DKLAGYDIERGFWIGIQ 449 (464)
Q Consensus 433 ~~v~~YD~~~~~W~~l~ 449 (464)
+++-+.++++..|..+-
T Consensus 294 ssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 294 SSLACLNLDTMAWETLL 310 (830)
T ss_pred cceeeeeecchheeeee
Confidence 37888999999999763
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.71 E-value=2.3e-16 Score=154.25 Aligned_cols=198 Identities=16% Similarity=0.129 Sum_probs=147.3
Q ss_pred cccCCCcceEEEEE--CCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeec--CCCCCCccccEEEEecCCC
Q 046692 224 SILKGRFMFSVVSI--MDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKV--ASMRYARSMPILGISEVSP 299 (464)
Q Consensus 224 ~~~~~R~~~s~~~~--~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l--~~m~~~R~~~~~~~~~~~~ 299 (464)
++|.||+++++.+. .+.|+++||.- +++......+++++||..+++|+++ |..|.||+.|.++++..+
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf-------~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~- 133 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEF-------YNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSN- 133 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEeccee-------ecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccC-
Confidence 36889999887765 67999999942 4555566789999999999999986 567889999999888632
Q ss_pred ccccccccCCCCCCccceEEecCcCCCC--CCccccccceeeecCCCccccc---CCCCC-Cccceeccccccccccccc
Q 046692 300 EFSIIPCHQSHQDRRFPRSRLGGVSDVY--EDPHRLSLRRQYRNSFDGFEGS---LLPNR-KSYKFIRQKSDQSITKASK 373 (464)
Q Consensus 300 ~~~~~~~~~~~~~gk~~iyviGG~~~~~--~~~~~l~~ve~Ydp~~n~W~~~---~l~~~-~~~~~~~~~~~~~~~~~~~ 373 (464)
.+|++||.-... ...+.-...+.||..+++|+.. .-|.+ .+| -+++.
T Consensus 134 ----------------~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGH-----------RMvaw 186 (521)
T KOG1230|consen 134 ----------------ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGH-----------RMVAW 186 (521)
T ss_pred ----------------eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccc-----------eeEEe
Confidence 489999953210 1123446678999999999982 22222 243 34677
Q ss_pred CcEEEEEcCCCCC---CCccCceEEEeCCCCcEEEecc---CCCCCCcceEEeEECCEEEEEeCC---------------
Q 046692 374 RFVLIAVGGLGSW---DEPLDSGEIYDSVSNKWMEIQR---LPVDFGVVSSGVVCNGIFYVYSET--------------- 432 (464)
Q Consensus 374 ~~~iyviGG~~~~---~~~l~~vevYD~~t~~W~~v~~---~p~~~~~~~~~v~~~g~lYViGG~--------------- 432 (464)
..+|++|||+... ..+++++++||+.+-+|+.+.+ -|.+|+.++..+.-.|.|||+||+
T Consensus 187 K~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~h 266 (521)
T KOG1230|consen 187 KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRH 266 (521)
T ss_pred eeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCcee
Confidence 7899999998432 2458999999999999999954 356777777665569999999996
Q ss_pred CceEEEeCCC-----CcEEEcccC---CCCcc
Q 046692 433 DKLAGYDIER-----GFWIGIQTS---PFPPR 456 (464)
Q Consensus 433 ~~v~~YD~~~-----~~W~~l~~l---p~pr~ 456 (464)
+.++..+++. -.|..+.+. |.||.
T Consensus 267 sDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs 298 (521)
T KOG1230|consen 267 SDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS 298 (521)
T ss_pred eeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence 2678888887 568777653 55664
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.69 E-value=5.7e-16 Score=154.58 Aligned_cols=248 Identities=13% Similarity=0.139 Sum_probs=172.4
Q ss_pred hhhhhhccccccccccCCchHHHHHhhc--cCCCCeEEEeccccC-CccccceEEeeCCCCceeeccc------cccCCC
Q 046692 159 SLMNARLVCKKWRYLTTTPRFLQMRREG--LHQNPWLFLFGAVKD-GYCSGEIHALDVSQDQWHRIDA------SILKGR 229 (464)
Q Consensus 159 sl~~~~~vck~W~~l~~~~~f~~~r~~~--~~~~~~l~v~GG~~~-~~~~~~v~~yD~~t~~W~~l~~------~~~~~R 229 (464)
+|..++...++|..-......+...... ...+..|++|||..+ +..++++|-+....-.|.++.+ ++|.||
T Consensus 58 ELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPR 137 (830)
T KOG4152|consen 58 ELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPR 137 (830)
T ss_pred hhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCc
Confidence 4466888899996433322222222222 267889999999764 4567777666666667777755 467899
Q ss_pred cceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCC----eeec---CCCCCCccccEEEEecCCCccc
Q 046692 230 FMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKS----WRKV---ASMRYARSMPILGISEVSPEFS 302 (464)
Q Consensus 230 ~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~----W~~l---~~m~~~R~~~~~~~~~~~~~~~ 302 (464)
.+|++..++++.|+|||....+. .-+.+...+++++++.+..-+. |... ..+|.+|..|.++++..+
T Consensus 138 lGHSFsl~gnKcYlFGGLaNdse--DpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eK---- 211 (830)
T KOG4152|consen 138 LGHSFSLVGNKCYLFGGLANDSE--DPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEK---- 211 (830)
T ss_pred cCceeEEeccEeEEecccccccc--CcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEec----
Confidence 99999999999999999532110 0112345678999999988554 8653 368899999998887322
Q ss_pred cccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCcccccCCCCCCccceecccccccccccccCcEEEEEcC
Q 046692 303 IIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGG 382 (464)
Q Consensus 303 ~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG 382 (464)
+.++-.+|++||.+| .++..++..|..+-.|....+.. +++....-+.+..+++++||+||
T Consensus 212 --------Ds~~skmvvyGGM~G-----~RLgDLW~Ldl~Tl~W~kp~~~G------~~PlPRSLHsa~~IGnKMyvfGG 272 (830)
T KOG4152|consen 212 --------DSKKSKMVVYGGMSG-----CRLGDLWTLDLDTLTWNKPSLSG------VAPLPRSLHSATTIGNKMYVFGG 272 (830)
T ss_pred --------cCCcceEEEEccccc-----ccccceeEEecceeecccccccC------CCCCCcccccceeecceeEEecc
Confidence 223445899999877 78899999999999999733221 11222222556889999999999
Q ss_pred CCC----C---------CCccCceEEEeCCCCcEEEec-------cCCCCCCcceEEeEECCEEEEEeCC
Q 046692 383 LGS----W---------DEPLDSGEIYDSVSNKWMEIQ-------RLPVDFGVVSSGVVCNGIFYVYSET 432 (464)
Q Consensus 383 ~~~----~---------~~~l~~vevYD~~t~~W~~v~-------~~p~~~~~~~~~v~~~g~lYViGG~ 432 (464)
.-. . -...+++-++++.+..|+.+- ..|.+|..||+ +.++..||+..|.
T Consensus 273 WVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCA-vAigtRlYiWSGR 341 (830)
T KOG4152|consen 273 WVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCA-VAIGTRLYIWSGR 341 (830)
T ss_pred eeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccccccee-EEeccEEEEEecc
Confidence 620 0 024567888999999999872 25666777765 5899999999874
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.47 E-value=2.8e-12 Score=124.35 Aligned_cols=245 Identities=18% Similarity=0.149 Sum_probs=160.8
Q ss_pred ccCCchHHHHHhhccCCCCeEEEeccccCCccccceEEeeCCC--CceeeccccccCCCcceEEEEECCEEEEEcCCcCC
Q 046692 173 LTTTPRFLQMRREGLHQNPWLFLFGAVKDGYCSGEIHALDVSQ--DQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSL 250 (464)
Q Consensus 173 l~~~~~f~~~r~~~~~~~~~l~v~GG~~~~~~~~~v~~yD~~t--~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl 250 (464)
++..|.+...- ..+..+..+||-=|... ..++..|... ..|.+++..+..+|.....++++++|||+||...
T Consensus 30 lPdlPvg~KnG-~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk- 103 (381)
T COG3055 30 LPDLPVGFKNG-AGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK- 103 (381)
T ss_pred CCCCCcccccc-ccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc-
Confidence 44444433221 23356667777655322 2567777654 6899999988999999999999999999999532
Q ss_pred ccCccccCCCccccceEEEEeCCCCCeeecCCC-CCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCC---
Q 046692 251 TSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASM-RYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDV--- 326 (464)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~--- 326 (464)
.+.......+++++|||.+|+|.++... |..-..+..+..+. . .||.+||.+..
T Consensus 104 -----~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~---------------~--~i~f~GGvn~~if~ 161 (381)
T COG3055 104 -----SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNG---------------T--KIYFFGGVNQNIFN 161 (381)
T ss_pred -----CCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCC---------------c--eEEEEccccHHhhh
Confidence 2223346689999999999999998743 33333333344331 1 38999996521
Q ss_pred ----------------------CC-----CccccccceeeecCCCcccc-cCCCCCCccceecccccccccccccCcEEE
Q 046692 327 ----------------------YE-----DPHRLSLRRQYRNSFDGFEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLI 378 (464)
Q Consensus 327 ----------------------~~-----~~~~l~~ve~Ydp~~n~W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iy 378 (464)
|. |...+..+..|+|.++.|+. -..|.....+ ++.+..++++.
T Consensus 162 ~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG---------sa~~~~~n~~~ 232 (381)
T COG3055 162 GYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG---------SAVVIKGNKLT 232 (381)
T ss_pred hhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccC---------cceeecCCeEE
Confidence 11 11234567789999999998 3344332211 23345678899
Q ss_pred EEcCCCCCCCccCceEEEeCCCC--cEEEeccCCCCCCcc-----eE-EeEECCEEEEEeCC------------------
Q 046692 379 AVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPVDFGVV-----SS-GVVCNGIFYVYSET------------------ 432 (464)
Q Consensus 379 viGG~~~~~~~l~~vevYD~~t~--~W~~v~~~p~~~~~~-----~~-~v~~~g~lYViGG~------------------ 432 (464)
+|-|.-...-+...+.+++...+ +|..+..+|.+.+.. ++ .-..++.+.|.||.
T Consensus 233 lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~ 312 (381)
T COG3055 233 LINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHE 312 (381)
T ss_pred EEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccccccc
Confidence 99887432233456677777644 899998888754322 11 12457888888863
Q ss_pred -------CceEEEeCCCCcEEEcccCCCCcc
Q 046692 433 -------DKLAGYDIERGFWIGIQTSPFPPR 456 (464)
Q Consensus 433 -------~~v~~YD~~~~~W~~l~~lp~pr~ 456 (464)
+.|+.+| .+.|+.+..||.+..
T Consensus 313 Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~ 341 (381)
T COG3055 313 GLSKSWNSEVYIFD--NGSWKIVGELPQGLA 341 (381)
T ss_pred chhhhhhceEEEEc--CCceeeecccCCCcc
Confidence 2677777 899999999998764
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.45 E-value=2.4e-12 Score=124.77 Aligned_cols=240 Identities=17% Similarity=0.246 Sum_probs=155.1
Q ss_pred cccccccccCCchHHHHHhhccCCCCeEEEeccccCC-----ccccceEEeeCCCCceeeccccccCCCcceEEEEECC-
Q 046692 166 VCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDG-----YCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMD- 239 (464)
Q Consensus 166 vck~W~~l~~~~~f~~~r~~~~~~~~~l~v~GG~~~~-----~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~- 239 (464)
..+.|..+..-|.-.+........++.||+|||.... ...++++.|||.+|+|+++....|..-.+++++++++
T Consensus 68 ~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~ 147 (381)
T COG3055 68 PGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGT 147 (381)
T ss_pred CCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCc
Confidence 4578999887775433333345788999999997532 3467899999999999999886677777888888887
Q ss_pred EEEEEcCCcCCccCcc-------ccCC-----------------CccccceEEEEeCCCCCeeecCCCCC-CccccEEEE
Q 046692 240 DVYVVGGCSSLTSFGR-------VDRS-----------------SFKTHKGVLVFSPLTKSWRKVASMRY-ARSMPILGI 294 (464)
Q Consensus 240 ~IYVvGG~~gl~~~~~-------~~~~-----------------~~~~~~~v~vydp~t~~W~~l~~m~~-~R~~~~~~~ 294 (464)
+||++||.+..+ |+. .+.+ .+.....|+.|||.+++|+.+...|. +++..+++.
T Consensus 148 ~i~f~GGvn~~i-f~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~ 226 (381)
T COG3055 148 KIYFFGGVNQNI-FNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVI 226 (381)
T ss_pred eEEEEccccHHh-hhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceee
Confidence 999999964311 110 0000 11223679999999999999885554 555533322
Q ss_pred ecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCC--cccc-cCCCCCCccceeccccccccccc
Q 046692 295 SEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFD--GFEG-SLLPNRKSYKFIRQKSDQSITKA 371 (464)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n--~W~~-~~l~~~~~~~~~~~~~~~~~~~~ 371 (464)
-+ ++ +.+|-|.-. +.-+...+.+++...+ +|.. +.+|.+.+... +-...+-..
T Consensus 227 ~~----------------n~--~~lInGEiK---pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~---eGvAGaf~G 282 (381)
T COG3055 227 KG----------------NK--LTLINGEIK---PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNK---EGVAGAFSG 282 (381)
T ss_pred cC----------------Ce--EEEEcceec---CCccccceeEEEeccCceeeeeccCCCCCCCCCc---cccceeccc
Confidence 22 23 566666422 2345555666777655 5777 55555443211 001111123
Q ss_pred ccCcEEEEEcCCC----------C----CC----CccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCCC
Q 046692 372 SKRFVLIAVGGLG----------S----WD----EPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETD 433 (464)
Q Consensus 372 ~~~~~iyviGG~~----------~----~~----~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~ 433 (464)
..++.+.+.||.. + .. ...+.|+++| .+.|+.+..||.+.+.. +.+..++++|+|||.+
T Consensus 283 ~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG-~s~~~nn~vl~IGGE~ 359 (381)
T COG3055 283 KSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYG-VSLSYNNKVLLIGGET 359 (381)
T ss_pred eeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccce-EEEecCCcEEEEcccc
Confidence 4667888888852 0 00 1144677776 89999999999865543 3457899999999853
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.23 E-value=2.4e-11 Score=87.00 Aligned_cols=50 Identities=30% Similarity=0.507 Sum_probs=44.1
Q ss_pred CCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCc
Q 046692 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYAR 287 (464)
Q Consensus 228 ~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R 287 (464)
||.+|++++++++|||+||... . ....+++++|||.|++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~---------~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDN---------S-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCC---------C-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6889999999999999999532 1 356889999999999999999999987
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.04 E-value=2.2e-10 Score=114.90 Aligned_cols=239 Identities=18% Similarity=0.134 Sum_probs=151.9
Q ss_pred CCCCeEEEeccccCCccccceEEeeCCCCceeeccc--cccCCCcceEEEEECC--EEEEEcCCcCCccCccccCCCccc
Q 046692 188 HQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDA--SILKGRFMFSVVSIMD--DVYVVGGCSSLTSFGRVDRSSFKT 263 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~--~~~~~R~~~s~~~~~~--~IYVvGG~~gl~~~~~~~~~~~~~ 263 (464)
..++.||+.||+++.....++|.|+...++|..+.- ..|..|+.|.++..-. ++|+.|-+-+++. .+....
T Consensus 270 ~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~-----r~~~s~ 344 (723)
T KOG2437|consen 270 VQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSV-----RNSKSL 344 (723)
T ss_pred CCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccccc-----cccccc
Confidence 456799999999988888899999999999998864 2577899999887755 9999999755432 233345
Q ss_pred cceEEEEeCCCCCeeecCC------CCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccce
Q 046692 264 HKGVLVFSPLTKSWRKVAS------MRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRR 337 (464)
Q Consensus 264 ~~~v~vydp~t~~W~~l~~------m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve 337 (464)
-+++|+||..++.|.-+.- -|.....|.+++.+ .|..|||+||+.-. .+.....-..
T Consensus 345 RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~----------------~k~~iyVfGGr~~~-~~e~~f~GLY 407 (723)
T KOG2437|consen 345 RSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDS----------------EKHMIYVFGGRILT-CNEPQFSGLY 407 (723)
T ss_pred ccceEEEecCCceeEEecccccccCCcceeecceeeEec----------------CcceEEEecCeecc-CCCccccceE
Confidence 6889999999999987752 13344555555554 33359999997531 1122345678
Q ss_pred eeecCCCcccc--cCCCCCC-ccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEec-------
Q 046692 338 QYRNSFDGFEG--SLLPNRK-SYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQ------- 407 (464)
Q Consensus 338 ~Ydp~~n~W~~--~~l~~~~-~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~------- 407 (464)
.||.....|+. .....+. .-....++-.+++.+..-+.++|++||.... ..++-...||+....=..+.
T Consensus 408 af~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-~El~L~f~y~I~~E~~~~~s~~~k~ds 486 (723)
T KOG2437|consen 408 AFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-TELNLFFSYDIDSEHVDIISDGTKKDS 486 (723)
T ss_pred EEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-eEEeehhcceeccccchhhhccCcCcc
Confidence 89999999987 1111111 1233345666777778889999999997553 22333344554433222221
Q ss_pred cCCCCCCcceEE--eEECCEEEEEeC------------CCceEEEeCCCCcEEEcc
Q 046692 408 RLPVDFGVVSSG--VVCNGIFYVYSE------------TDKLAGYDIERGFWIGIQ 449 (464)
Q Consensus 408 ~~p~~~~~~~~~--v~~~g~lYViGG------------~~~v~~YD~~~~~W~~l~ 449 (464)
+|-..+++..-+ -.-+..|++.-| .++.+.|++.++.|..|.
T Consensus 487 S~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~ 542 (723)
T KOG2437|consen 487 SMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY 542 (723)
T ss_pred ccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence 111111111100 011334554333 257889999999998654
No 31
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.94 E-value=1.2e-09 Score=76.97 Aligned_cols=47 Identities=26% Similarity=0.531 Sum_probs=40.7
Q ss_pred CCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCC
Q 046692 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMR 284 (464)
Q Consensus 228 ~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~ 284 (464)
||..|++++++++|||+||..+ .....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~----------~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG----------NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES----------TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc----------cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999532 2357889999999999999999986
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.80 E-value=8.4e-09 Score=73.71 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=40.4
Q ss_pred ccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCC
Q 046692 368 ITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDF 413 (464)
Q Consensus 368 ~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~ 413 (464)
.++++.+++||++||........+++++||+++++|+.+++||.+|
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 4568899999999999774467899999999999999999999865
No 33
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.75 E-value=2.2e-08 Score=71.20 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=40.7
Q ss_pred CCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCC
Q 046692 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMR 284 (464)
Q Consensus 228 ~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~ 284 (464)
||..|++++++++|||+||+. ........+++++||+.+++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~--------~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYG--------TDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcc--------cCCCCcccceeEEEECCCCEEeecCCCC
Confidence 688999999999999999961 1122356789999999999999999875
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.74 E-value=2.4e-08 Score=71.06 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=41.5
Q ss_pred CCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEe
Q 046692 238 MDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGIS 295 (464)
Q Consensus 238 ~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~ 295 (464)
+++|||+||+.. ......+++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~---------~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD---------DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC---------CCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 579999999531 2235679999999999999999999999999998763
No 35
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.63 E-value=2.7e-07 Score=87.91 Aligned_cols=57 Identities=26% Similarity=0.465 Sum_probs=42.6
Q ss_pred CceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCC-----C-ceEEEeCCCCcEEE
Q 046692 391 DSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET-----D-KLAGYDIERGFWIG 447 (464)
Q Consensus 391 ~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~-----~-~v~~YD~~~~~W~~ 447 (464)
..+++|+..+++|+.+...+........++.+||.||.+... . .|.+||+.+++|..
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~ 132 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKE 132 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEee
Confidence 478999999999999975443211112256899999998631 1 69999999999996
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.63 E-value=4.5e-08 Score=69.56 Aligned_cols=48 Identities=33% Similarity=0.515 Sum_probs=30.0
Q ss_pred CCcceEEEEE-CCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCC
Q 046692 228 GRFMFSVVSI-MDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRY 285 (464)
Q Consensus 228 ~R~~~s~~~~-~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~ 285 (464)
||.+|+++.+ ++.|||+||++. + ....+++|+||+.+++|+++++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~---------~-~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS---------S-GSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-----------TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCC---------C-CcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999988 599999999532 1 1478899999999999999998873
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.60 E-value=3.3e-08 Score=69.50 Aligned_cols=43 Identities=26% Similarity=0.523 Sum_probs=38.9
Q ss_pred ccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCC
Q 046692 368 ITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLP 410 (464)
Q Consensus 368 ~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p 410 (464)
+++++.+++||++||.......++++++||+.+++|+.+++||
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5678999999999999875578999999999999999999987
No 38
>smart00612 Kelch Kelch domain.
Probab=98.49 E-value=2.2e-07 Score=64.83 Aligned_cols=46 Identities=33% Similarity=0.500 Sum_probs=38.8
Q ss_pred EEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEec
Q 046692 240 DVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISE 296 (464)
Q Consensus 240 ~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~ 296 (464)
+|||+||..+ ....+++++|||.+++|+.+++|+.+|..+++++++
T Consensus 1 ~iyv~GG~~~-----------~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDG-----------GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCC-----------CceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence 4899999531 135788999999999999999999999999888764
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.42 E-value=5.4e-07 Score=64.00 Aligned_cols=47 Identities=21% Similarity=0.435 Sum_probs=41.4
Q ss_pred CCeEEEecccc--CCccccceEEeeCCCCceeeccccccCCCcceEEEEE
Q 046692 190 NPWLFLFGAVK--DGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSI 237 (464)
Q Consensus 190 ~~~l~v~GG~~--~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~ 237 (464)
++.|||+||.. .....++++.||+.+++|+++++ +|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~-~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGD-LPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCC-CCCCccceEEEEC
Confidence 46899999988 56678999999999999999976 8899999998863
No 40
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.34 E-value=4.5e-07 Score=91.60 Aligned_cols=200 Identities=15% Similarity=0.072 Sum_probs=126.5
Q ss_pred CCCCceeecccc---------ccCCCcceEEEEECC--EEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecC
Q 046692 213 VSQDQWHRIDAS---------ILKGRFMFSVVSIMD--DVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVA 281 (464)
Q Consensus 213 ~~t~~W~~l~~~---------~~~~R~~~s~~~~~~--~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~ 281 (464)
+.+..|.+++.. -|..|.+|.++.-.+ -||+.||.+| .+...++|.|+-..+.|..+.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-----------~~~l~DFW~Y~v~e~~W~~iN 304 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG-----------TQDLADFWAYSVKENQWTCIN 304 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCccc-----------chhHHHHHhhcCCcceeEEee
Confidence 455678777652 256789999987754 8999999543 256889999999999998864
Q ss_pred ---CCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCC--CCCccccccceeeecCCCcccccCCCCCCc
Q 046692 282 ---SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDV--YEDPHRLSLRRQYRNSFDGFEGSLLPNRKS 356 (464)
Q Consensus 282 ---~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~--~~~~~~l~~ve~Ydp~~n~W~~~~l~~~~~ 356 (464)
..|-+|+.|-++.-... .| +|++|-+-+. ......-+..+.||..++.|...++.....
T Consensus 305 ~~t~~PG~RsCHRMVid~S~--------------~K--LYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~d 368 (723)
T KOG2437|consen 305 RDTEGPGARSCHRMVIDISR--------------RK--LYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAAD 368 (723)
T ss_pred cCCCCCcchhhhhhhhhhhH--------------hH--HhhhhhccccccccccccccceEEEecCCceeEEeccccccc
Confidence 36778888877654311 33 7999975321 011122356789999999999843333321
Q ss_pred cceecccccccccccccCcE--EEEEcCCCC--CCCccCceEEEeCCCCcEEEeccCCC----------CCCcceE-EeE
Q 046692 357 YKFIRQKSDQSITKASKRFV--LIAVGGLGS--WDEPLDSGEIYDSVSNKWMEIQRLPV----------DFGVVSS-GVV 421 (464)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~--iyviGG~~~--~~~~l~~vevYD~~t~~W~~v~~~p~----------~~~~~~~-~v~ 421 (464)
.+ +..-.+ +.+++...+ |||+||..- ......-++.||.....|..+..--. .|-.++. ...
T Consensus 369 GG-P~~vfD--HqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~ 445 (723)
T KOG2437|consen 369 GG-PKLVFD--HQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHS 445 (723)
T ss_pred CC-cceeec--ceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcC
Confidence 11 111123 334555555 999999833 22346788999999999987642111 1111221 124
Q ss_pred ECCEEEEEeCCC------ceEEEeCCC
Q 046692 422 CNGIFYVYSETD------KLAGYDIER 442 (464)
Q Consensus 422 ~~g~lYViGG~~------~v~~YD~~~ 442 (464)
-+.++|++||+. -..+||+..
T Consensus 446 ~n~~ly~fggq~s~~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 446 KNRCLYVFGGQRSKTELNLFFSYDIDS 472 (723)
T ss_pred CCCeEEeccCcccceEEeehhcceecc
Confidence 478999999863 335565543
No 41
>smart00612 Kelch Kelch domain.
Probab=98.33 E-value=9e-07 Score=61.64 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=41.0
Q ss_pred eEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEECC
Q 046692 192 WLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMD 239 (464)
Q Consensus 192 ~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~ 239 (464)
.||++||.......+.+++|||.+++|..+++ |+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPS-MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCC-CCCccccceEEEeCC
Confidence 48999998765667889999999999999997 889999999988764
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.31 E-value=1.1e-06 Score=62.41 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=36.5
Q ss_pred ccccccCcEEEEEcCC--CCCCCccCceEEEeCCCCcEEEeccCC
Q 046692 368 ITKASKRFVLIAVGGL--GSWDEPLDSGEIYDSVSNKWMEIQRLP 410 (464)
Q Consensus 368 ~~~~~~~~~iyviGG~--~~~~~~l~~vevYD~~t~~W~~v~~~p 410 (464)
+++++.+++||++||+ .......+++++||+++++|+.+++||
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 4567899999999999 333456889999999999999998875
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.13 E-value=1.8e-06 Score=61.24 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=25.4
Q ss_pred cCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCC
Q 046692 373 KRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLP 410 (464)
Q Consensus 373 ~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p 410 (464)
.+++||++||.+.....++++++||+.+++|++++++|
T Consensus 11 ~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 11 GDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred eCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 36899999999776567999999999999999998887
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.08 E-value=9.3e-06 Score=55.63 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=34.0
Q ss_pred ccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCC
Q 046692 225 ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTK 275 (464)
Q Consensus 225 ~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~ 275 (464)
+|.+|..|++++++++|||+||..+ ......+++|+||..+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~---------~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG---------NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC---------CCCCEECcEEEEECCCC
Confidence 3678999999999999999999542 22356789999998763
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.91 E-value=0.00013 Score=69.64 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=94.0
Q ss_pred eEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCC----CCeeecC-C
Q 046692 208 IHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLT----KSWRKVA-S 282 (464)
Q Consensus 208 v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t----~~W~~l~-~ 282 (464)
...||+.+++++.+......-.+++ +..-++.+.++||.. + -.+.+-.|+|.+ ..|.+.+ .
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg-~~L~dG~ll~tGG~~--------~-----G~~~ir~~~p~~~~~~~~w~e~~~~ 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGG-AFLPDGRLLQTGGDN--------D-----GNKAIRIFTPCTSDGTCDWTESPND 113 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCc-CCCCCCCEEEeCCCC--------c-----cccceEEEecCCCCCCCCceECccc
Confidence 4579999999999875222222222 233489999999942 1 234577788876 6798876 5
Q ss_pred CCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCc---ccccCCCC------
Q 046692 283 MRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDG---FEGSLLPN------ 353 (464)
Q Consensus 283 m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~---W~~~~l~~------ 353 (464)
|..+|..+++..+.+ |+ ++++||... .+.|.|.+.... +...-+..
T Consensus 114 m~~~RWYpT~~~L~D---------------G~--vlIvGG~~~--------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~ 168 (243)
T PF07250_consen 114 MQSGRWYPTATTLPD---------------GR--VLIVGGSNN--------PTYEFWPPKGPGPGPVTLPFLSQTSDTLP 168 (243)
T ss_pred ccCCCccccceECCC---------------CC--EEEEeCcCC--------CcccccCCccCCCCceeeecchhhhccCc
Confidence 999999999998875 44 899999742 233433332211 11111111
Q ss_pred CCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcE-EEeccCCC
Q 046692 354 RKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKW-MEIQRLPV 411 (464)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W-~~v~~~p~ 411 (464)
..-|.+ ....-+|+||+++... ..+||+.++++ +.++.+|.
T Consensus 169 ~nlYP~---------~~llPdG~lFi~an~~--------s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 169 NNLYPF---------VHLLPDGNLFIFANRG--------SIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred cccCce---------EEEcCCCCEEEEEcCC--------cEEEeCCCCeEEeeCCCCCC
Confidence 011221 2345678999998753 37899999987 77788876
No 46
>PLN02772 guanylate kinase
Probab=97.74 E-value=0.00013 Score=74.00 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=58.5
Q ss_pred cCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeec---CCCCCCccccEEEEecCCCccc
Q 046692 226 LKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKV---ASMRYARSMPILGISEVSPEFS 302 (464)
Q Consensus 226 ~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l---~~m~~~R~~~~~~~~~~~~~~~ 302 (464)
..++..++++++++++||+||.+ + .....+.+++||+.|++|... .+.|.||..|+++++++.
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~--------d--~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~---- 87 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNH--------E--GNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKD---- 87 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccC--------C--CccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCc----
Confidence 45888999999999999999953 1 112568899999999999864 467889999999999743
Q ss_pred cccccCCCCCCccceEEecCcCC
Q 046692 303 IIPCHQSHQDRRFPRSRLGGVSD 325 (464)
Q Consensus 303 ~~~~~~~~~~gk~~iyviGG~~~ 325 (464)
.|+++++.++
T Consensus 88 -------------rilv~~~~~~ 97 (398)
T PLN02772 88 -------------RILVIKKGSA 97 (398)
T ss_pred -------------eEEEEeCCCC
Confidence 3899987643
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.49 E-value=0.0096 Score=56.48 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=104.1
Q ss_pred cceEEeeCCCCceeeccccccCCCcc-----eEEEE--E--CCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCC
Q 046692 206 GEIHALDVSQDQWHRIDASILKGRFM-----FSVVS--I--MDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKS 276 (464)
Q Consensus 206 ~~v~~yD~~t~~W~~l~~~~~~~R~~-----~s~~~--~--~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~ 276 (464)
..++.+||.|++|..+|. ++.++.. ++++. . +=+|..+... .. ......+++|+..+++
T Consensus 14 ~~~~V~NP~T~~~~~LP~-~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~---------~~--~~~~~~~~Vys~~~~~ 81 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT-PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDR---------SG--NRNQSEHQVYTLGSNS 81 (230)
T ss_pred CcEEEECCCCCCEEecCC-CCCcccccccceEEEeecccCCcEEEEEEEee---------cC--CCCCccEEEEEeCCCC
Confidence 468999999999999986 3322110 11110 0 1122222210 00 0123468999999999
Q ss_pred eeecCCCCCC-ccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCcccc-cCCCCC
Q 046692 277 WRKVASMRYA-RSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-SLLPNR 354 (464)
Q Consensus 277 W~~l~~m~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~~l~~~ 354 (464)
|+.+.+.+.. ......+.++ |. ||-+..... ......+-.||..+.+|.. .++|..
T Consensus 82 Wr~~~~~~~~~~~~~~~v~~~----------------G~--lyw~~~~~~----~~~~~~IvsFDl~~E~f~~~i~~P~~ 139 (230)
T TIGR01640 82 WRTIECSPPHHPLKSRGVCIN----------------GV--LYYLAYTLK----TNPDYFIVSFDVSSERFKEFIPLPCG 139 (230)
T ss_pred ccccccCCCCccccCCeEEEC----------------CE--EEEEEEECC----CCCcEEEEEEEcccceEeeeeecCcc
Confidence 9998743221 1111122333 22 444432211 0111267889999999995 666643
Q ss_pred CccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEe-CCCCcEEEeccCCC--CCC----cceEEeEECCEEE
Q 046692 355 KSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYD-SVSNKWMEIQRLPV--DFG----VVSSGVVCNGIFY 427 (464)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD-~~t~~W~~v~~~p~--~~~----~~~~~v~~~g~lY 427 (464)
.... ......+..+|+|.++...... ..-++++.+ -....|+++-.++. ... ....++..+|+|+
T Consensus 140 ~~~~------~~~~~L~~~~G~L~~v~~~~~~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~ 211 (230)
T TIGR01640 140 NSDS------VDYLSLINYKGKLAVLKQKKDT--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIV 211 (230)
T ss_pred cccc------ccceEEEEECCEEEEEEecCCC--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEE
Confidence 3210 0012345677888887754221 112566654 33557998754442 111 1123456788888
Q ss_pred EEeCC--Cc-eEEEeCCCC
Q 046692 428 VYSET--DK-LAGYDIERG 443 (464)
Q Consensus 428 ViGG~--~~-v~~YD~~~~ 443 (464)
+.... .. +..||++++
T Consensus 212 ~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 212 LCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEeCCCCceEEEEEeccCC
Confidence 87653 23 899999875
No 48
>PLN02772 guanylate kinase
Probab=97.43 E-value=0.0006 Score=69.20 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=55.8
Q ss_pred cccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEe---ccCCCCCCcceEEeEECCEEEEEeCC----CceEEEe
Q 046692 367 SITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEI---QRLPVDFGVVSSGVVCNGIFYVYSET----DKLAGYD 439 (464)
Q Consensus 367 ~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v---~~~p~~~~~~~~~v~~~g~lYViGG~----~~v~~YD 439 (464)
+.+++.+++++||+||........+.+++||+.+++|... ...|.++..+.++++-+++|+|+++. +.+|...
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~ 106 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLE 106 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEE
Confidence 3567889999999999866433567999999999999886 34566676666554447899999742 3566555
Q ss_pred CCC
Q 046692 440 IER 442 (464)
Q Consensus 440 ~~~ 442 (464)
++|
T Consensus 107 ~~t 109 (398)
T PLN02772 107 VDT 109 (398)
T ss_pred cCC
Confidence 544
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.42 E-value=0.0069 Score=57.91 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=89.9
Q ss_pred eEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCC--
Q 046692 266 GVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSF-- 343 (464)
Q Consensus 266 ~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~-- 343 (464)
....|||.|++++.+... -..++ ++|....||+ +..+||..+ ....+..|+|..
T Consensus 47 ~s~~yD~~tn~~rpl~v~---td~FC-------------Sgg~~L~dG~--ll~tGG~~~------G~~~ir~~~p~~~~ 102 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQ---TDTFC-------------SGGAFLPDGR--LLQTGGDND------GNKAIRIFTPCTSD 102 (243)
T ss_pred EEEEEecCCCcEEeccCC---CCCcc-------------cCcCCCCCCC--EEEeCCCCc------cccceEEEecCCCC
Confidence 357899999999877532 11111 1223333466 688998632 345677788765
Q ss_pred --Ccccc--cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCC-----cEEEeccCC--CC
Q 046692 344 --DGFEG--SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN-----KWMEIQRLP--VD 412 (464)
Q Consensus 344 --n~W~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~-----~W~~v~~~p--~~ 412 (464)
.+|.+ ..|...+=|. .....-+|+++|+||.... +.|.+.+... .|..+.... .+
T Consensus 103 ~~~~w~e~~~~m~~~RWYp---------T~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~ 168 (243)
T PF07250_consen 103 GTCDWTESPNDMQSGRWYP---------TATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLP 168 (243)
T ss_pred CCCCceECcccccCCCccc---------cceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCc
Confidence 56877 3466655443 3345668999999998632 3454444221 222222211 11
Q ss_pred CCcc-eEEeEECCEEEEEeCCCceEEEeCCCCcE-EEcccCCCC
Q 046692 413 FGVV-SSGVVCNGIFYVYSETDKLAGYDIERGFW-IGIQTSPFP 454 (464)
Q Consensus 413 ~~~~-~~~v~~~g~lYViGG~~~v~~YD~~~~~W-~~l~~lp~p 454 (464)
.... ...+.-+|+||+++.. .-..||+.++++ +.++.+|-.
T Consensus 169 ~nlYP~~~llPdG~lFi~an~-~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 169 NNLYPFVHLLPDGNLFIFANR-GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred cccCceEEEcCCCCEEEEEcC-CcEEEeCCCCeEEeeCCCCCCC
Confidence 2222 1223569999999865 556789999987 788888754
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.88 E-value=0.032 Score=56.42 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=34.5
Q ss_pred EEEE-ECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEec
Q 046692 233 SVVS-IMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISE 296 (464)
Q Consensus 233 s~~~-~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~ 296 (464)
.++. .+++|+.++.. ....+||+.|..-..+|.|+.+...+.+..++
T Consensus 70 ~F~al~gskIv~~d~~-----------------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG 117 (342)
T PF07893_consen 70 DFFALHGSKIVAVDQS-----------------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVG 117 (342)
T ss_pred EEEEecCCeEEEEcCC-----------------CCeEEEECCCCeEeccCCCCCCCcceEEEEeC
Confidence 3444 49999888762 23789999999988888888777776555554
No 51
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.78 E-value=0.00068 Score=47.43 Aligned_cols=39 Identities=31% Similarity=0.589 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHhhCCcchhhhhhccccccccccCCchH
Q 046692 141 IFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRF 179 (464)
Q Consensus 141 ~~lp~dl~~~iL~rLp~~sl~~~~~vck~W~~l~~~~~f 179 (464)
..||+|++.+||+.++..++.++..+||+|+.++..+.+
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 468999999999999999999999999999999877644
No 52
>PF13854 Kelch_5: Kelch motif
Probab=96.64 E-value=0.0031 Score=42.98 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=27.6
Q ss_pred ccccccCcEEEEEcCCCC-CCCccCceEEEeCCCC
Q 046692 368 ITKASKRFVLIAVGGLGS-WDEPLDSGEIYDSVSN 401 (464)
Q Consensus 368 ~~~~~~~~~iyviGG~~~-~~~~l~~vevYD~~t~ 401 (464)
+++++.+++||++||... ....++++++||+.++
T Consensus 8 hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 8 HSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred eEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 455678899999999984 5567899999998763
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.36 E-value=0.62 Score=47.91 Aligned_cols=191 Identities=16% Similarity=0.151 Sum_probs=101.6
Q ss_pred CCCCeEEEeccccCCccccceEEeeCCCCc--eeeccccc----c---CCCcceEEEEECCEEEEEcCCcCCccCccccC
Q 046692 188 HQNPWLFLFGAVKDGYCSGEIHALDVSQDQ--WHRIDASI----L---KGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDR 258 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~--W~~l~~~~----~---~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~ 258 (464)
..++.+|+... ...+++||..+++ |+.-.... . ..+...+.++.++.||+.+.
T Consensus 67 v~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------------ 128 (394)
T PRK11138 67 VAYNKVYAADR------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------------ 128 (394)
T ss_pred EECCEEEEECC------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------------
Confidence 45677777654 2368999988765 87532210 0 11222345667889987543
Q ss_pred CCccccceEEEEeCCCCC--eeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccc
Q 046692 259 SSFKTHKGVLVFSPLTKS--WRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLR 336 (464)
Q Consensus 259 ~~~~~~~~v~vydp~t~~--W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~v 336 (464)
...++.+|+.|++ |+.-.+ ......+ ++.+ ++ +|+..+ ...+
T Consensus 129 -----~g~l~ald~~tG~~~W~~~~~-~~~~ssP--~v~~----------------~~--v~v~~~----------~g~l 172 (394)
T PRK11138 129 -----KGQVYALNAEDGEVAWQTKVA-GEALSRP--VVSD----------------GL--VLVHTS----------NGML 172 (394)
T ss_pred -----CCEEEEEECCCCCCcccccCC-CceecCC--EEEC----------------CE--EEEECC----------CCEE
Confidence 1248899998875 865321 1111221 1222 22 454332 1246
Q ss_pred eeeecCCCc--cccc-CCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCC--cEEEeccCCC
Q 046692 337 RQYRNSFDG--FEGS-LLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPV 411 (464)
Q Consensus 337 e~Ydp~~n~--W~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~--~W~~v~~~p~ 411 (464)
..+|+.+.+ |+.. ..+...... ..+.++.++.+|+..+. ..+..+|+.+. .|+.-...|.
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~--------~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRG--------ESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccC--------CCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCC
Confidence 778887776 6652 211110000 01223456677775432 25677888776 4875322221
Q ss_pred CC-------CcceEEeEECCEEEEEeCCCceEEEeCCCC--cEEE
Q 046692 412 DF-------GVVSSGVVCNGIFYVYSETDKLAGYDIERG--FWIG 447 (464)
Q Consensus 412 ~~-------~~~~~~v~~~g~lYViGG~~~v~~YD~~~~--~W~~ 447 (464)
.. .....-++.++.+|+.+....+.++|+.++ .|+.
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 10 011122467899998876678899998876 4764
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.20 E-value=0.6 Score=48.03 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=45.2
Q ss_pred ccccCcEEEEEcCCCCCCCccCceEEEeCCCCc--EEEeccCCCCCCcceEEeEECCEEEEEeCCCceEEEeCCCC--cE
Q 046692 370 KASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNK--WMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERG--FW 445 (464)
Q Consensus 370 ~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~--W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~~v~~YD~~~~--~W 445 (464)
.++.++.+|+.+.. ..+.++|+.+.+ |+.- +... ...++.++.||+......+.++|+.++ .|
T Consensus 252 P~v~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~--~~~~----~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 252 PVVVGGVVYALAYN-------GNLVALDLRSGQIVWKRE--YGSV----NDFAVDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred cEEECCEEEEEEcC-------CeEEEEECCCCCEEEeec--CCCc----cCcEEECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 35668899986532 367899998764 8763 2211 113467999999987789999999876 47
Q ss_pred EE
Q 046692 446 IG 447 (464)
Q Consensus 446 ~~ 447 (464)
+.
T Consensus 319 ~~ 320 (394)
T PRK11138 319 SQ 320 (394)
T ss_pred cc
Confidence 53
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.19 E-value=0.084 Score=53.43 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=39.6
Q ss_pred CCCeEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCC
Q 046692 189 QNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGC 247 (464)
Q Consensus 189 ~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~ 247 (464)
.+.+|+.++.. ..+..||+.+..-..+|. ++.+...-.++.++++|||+...
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~-l~~pk~~pisv~VG~~LY~m~~~ 126 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPR-LHSPKRCPISVSVGDKLYAMDRS 126 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCC-CCCCCcceEEEEeCCeEEEeecc
Confidence 46777777553 347899999999998887 55555555677779999999874
No 56
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=96.14 E-value=0.0022 Score=42.97 Aligned_cols=38 Identities=42% Similarity=0.766 Sum_probs=34.5
Q ss_pred ChHHHHHHHHhhCCcchhhhhhccccccccccCCchHH
Q 046692 143 LPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFL 180 (464)
Q Consensus 143 lp~dl~~~iL~rLp~~sl~~~~~vck~W~~l~~~~~f~ 180 (464)
+|++++..|+.+++..++.++..+|++|+.+...+.+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 68999999999999999999999999999998877643
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.98 E-value=1.4 Score=41.22 Aligned_cols=187 Identities=18% Similarity=0.138 Sum_probs=101.7
Q ss_pred CCCeEEEeccccCCccccceEEeeCCCCc--eeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccce
Q 046692 189 QNPWLFLFGAVKDGYCSGEIHALDVSQDQ--WHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKG 266 (464)
Q Consensus 189 ~~~~l~v~GG~~~~~~~~~v~~yD~~t~~--W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~ 266 (464)
.++.+|+.. ....++++|+.+++ |+.-.+ .......+..++.|||..+. +.
T Consensus 35 ~~~~v~~~~------~~~~l~~~d~~tG~~~W~~~~~----~~~~~~~~~~~~~v~v~~~~-----------------~~ 87 (238)
T PF13360_consen 35 DGGRVYVAS------GDGNLYALDAKTGKVLWRFDLP----GPISGAPVVDGGRVYVGTSD-----------------GS 87 (238)
T ss_dssp ETTEEEEEE------TTSEEEEEETTTSEEEEEEECS----SCGGSGEEEETTEEEEEETT-----------------SE
T ss_pred eCCEEEEEc------CCCEEEEEECCCCCEEEEeecc----ccccceeeecccccccccce-----------------ee
Confidence 456677663 23478999998876 655322 12222247779999888651 25
Q ss_pred EEEEeCCCCC--ee-ecCCCCCC--ccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeec
Q 046692 267 VLVFSPLTKS--WR-KVASMRYA--RSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRN 341 (464)
Q Consensus 267 v~vydp~t~~--W~-~l~~m~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp 341 (464)
++.+|..+++ |+ .....+.. .......+.+ + .+|+... ...+..+|+
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~----------------~--~~~~~~~----------~g~l~~~d~ 139 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG----------------D--RLYVGTS----------SGKLVALDP 139 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET----------------T--EEEEEET----------CSEEEEEET
T ss_pred eEecccCCcceeeeeccccccccccccccCceEec----------------C--EEEEEec----------cCcEEEEec
Confidence 8999988876 88 34332222 2333333332 1 1333321 234567887
Q ss_pred CCCc--ccc-cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCc--EEEeccCCCCCCcc
Q 046692 342 SFDG--FEG-SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNK--WMEIQRLPVDFGVV 416 (464)
Q Consensus 342 ~~n~--W~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~--W~~v~~~p~~~~~~ 416 (464)
.+.. |+. ...+..... +..........+..++.+|+..+.+ .+..+|..++. |+.. +.. ..
T Consensus 140 ~tG~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~~w~~~--~~~---~~ 205 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSP--ISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEKLWSKP--ISG---IY 205 (238)
T ss_dssp TTTEEEEEEESSTT-SS----EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEEEEEEC--SS----EC
T ss_pred CCCcEEEEeecCCCCCCcc--eeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCCEEEEec--CCC---cc
Confidence 7665 665 222111100 0000011123344567899887653 14555999987 8332 222 12
Q ss_pred eEEeEECCEEEEEeCCCceEEEeCCCCc
Q 046692 417 SSGVVCNGIFYVYSETDKLAGYDIERGF 444 (464)
Q Consensus 417 ~~~v~~~g~lYViGG~~~v~~YD~~~~~ 444 (464)
......++.||+......|.++|+.+++
T Consensus 206 ~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 206 SLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 2134668899998867799999999874
No 58
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=95.97 E-value=0.0034 Score=43.88 Aligned_cols=40 Identities=40% Similarity=0.672 Sum_probs=33.5
Q ss_pred CChHHHHHHHHhhCCcchhhhhhccccccccccCCchHHH
Q 046692 142 FLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQ 181 (464)
Q Consensus 142 ~lp~dl~~~iL~rLp~~sl~~~~~vck~W~~l~~~~~f~~ 181 (464)
.||+|++.+|+.+++..++.++..+|++|+.+...+.+..
T Consensus 5 ~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 5 DLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 5899999999999999999999999999999998876543
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.69 E-value=1.8 Score=40.40 Aligned_cols=176 Identities=18% Similarity=0.094 Sum_probs=96.2
Q ss_pred ceEEeeCCCCc--eeeccccccCCCcceE--EEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCC--eeec
Q 046692 207 EIHALDVSQDQ--WHRIDASILKGRFMFS--VVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKS--WRKV 280 (464)
Q Consensus 207 ~v~~yD~~t~~--W~~l~~~~~~~R~~~s--~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~--W~~l 280 (464)
.+.++|+.+++ |+.-. ..+..... .+..++.+|+..+ ...++.+|+.|++ |+.-
T Consensus 4 ~l~~~d~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~v~~~~~-----------------~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL---GPGIGGPVATAVPDGGRVYVASG-----------------DGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp EEEEEETTTTEEEEEEEC---SSSCSSEEETEEEETTEEEEEET-----------------TSEEEEEETTTSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEC---CCCCCCccceEEEeCCEEEEEcC-----------------CCEEEEEECCCCCEEEEee
Confidence 57889987765 77621 11222223 3447889988854 2358999998886 6653
Q ss_pred CCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCc--ccc--cCCCCCCc
Q 046692 281 ASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDG--FEG--SLLPNRKS 356 (464)
Q Consensus 281 ~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~--W~~--~~l~~~~~ 356 (464)
. +.+-... ....+ ++ +|+..+. ..+..+|..+.+ |+. ...+....
T Consensus 64 ~--~~~~~~~-~~~~~----------------~~--v~v~~~~----------~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 64 L--PGPISGA-PVVDG----------------GR--VYVGTSD----------GSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp C--SSCGGSG-EEEET----------------TE--EEEEETT----------SEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred c--cccccce-eeecc----------------cc--cccccce----------eeeEecccCCcceeeeecccccccccc
Confidence 2 2221121 12222 22 5555421 146677866554 773 22122211
Q ss_pred cceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCC--cEEEeccCCCCCC-------cceEEeEECCEEE
Q 046692 357 YKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPVDFG-------VVSSGVVCNGIFY 427 (464)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~--~W~~v~~~p~~~~-------~~~~~v~~~g~lY 427 (464)
.. ....++.++.+|+... -..+.++|+.+. .|+.-...+.... .....+..++.+|
T Consensus 113 ~~--------~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 113 RS--------SSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp B----------SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred cc--------ccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 11 0223344667777653 236899999877 4777544433111 1122334568999
Q ss_pred EEeCCCceEEEeCCCCc--EEEc
Q 046692 428 VYSETDKLAGYDIERGF--WIGI 448 (464)
Q Consensus 428 ViGG~~~v~~YD~~~~~--W~~l 448 (464)
+..+...+..+|..+++ |+..
T Consensus 178 ~~~~~g~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 178 VSSGDGRVVAVDLATGEKLWSKP 200 (238)
T ss_dssp EECCTSSEEEEETTTTEEEEEEC
T ss_pred EEcCCCeEEEEECCCCCEEEEec
Confidence 99877667777999997 8543
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.21 E-value=2.8 Score=42.59 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=43.2
Q ss_pred cccCcEEEEEcCCCCCCCccCceEEEeCCCC--cEEEeccCCCCCCcceEEeEECCEEEEEeCCCceEEEeCCCC--cEE
Q 046692 371 ASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERG--FWI 446 (464)
Q Consensus 371 ~~~~~~iyviGG~~~~~~~l~~vevYD~~t~--~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~~v~~YD~~~~--~W~ 446 (464)
++.++.+|+.... ..+.+||+++. .|+.- .+ . ....++.++.+|+......+.++|..++ .|+
T Consensus 238 ~~~~~~vy~~~~~-------g~l~a~d~~tG~~~W~~~--~~---~-~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 238 VVDGGQVYAVSYQ-------GRVAALDLRSGRVLWKRD--AS---S-YQGPAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred EEECCEEEEEEcC-------CEEEEEECCCCcEEEeec--cC---C-ccCceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 4567888886532 35789999776 37653 11 1 1122467999999877778999999776 576
Q ss_pred E
Q 046692 447 G 447 (464)
Q Consensus 447 ~ 447 (464)
.
T Consensus 305 ~ 305 (377)
T TIGR03300 305 N 305 (377)
T ss_pred c
Confidence 4
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.16 E-value=3.5 Score=41.87 Aligned_cols=188 Identities=17% Similarity=0.139 Sum_probs=96.5
Q ss_pred CCCCeEEEeccccCCccccceEEeeCCCCc--eeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccc
Q 046692 188 HQNPWLFLFGAVKDGYCSGEIHALDVSQDQ--WHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHK 265 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~--W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~ 265 (464)
..++.+|+.+. ...+++||+.+++ |+.-... ....+.++.++.+|+.+. + .
T Consensus 63 v~~~~v~v~~~------~g~v~a~d~~tG~~~W~~~~~~----~~~~~p~v~~~~v~v~~~----------~-------g 115 (377)
T TIGR03300 63 VAGGKVYAADA------DGTVVALDAETGKRLWRVDLDE----RLSGGVGADGGLVFVGTE----------K-------G 115 (377)
T ss_pred EECCEEEEECC------CCeEEEEEccCCcEeeeecCCC----CcccceEEcCCEEEEEcC----------C-------C
Confidence 34566665543 1368999988765 8643221 112234455777876543 1 2
Q ss_pred eEEEEeCCCCC--eeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCC
Q 046692 266 GVLVFSPLTKS--WRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSF 343 (464)
Q Consensus 266 ~v~vydp~t~~--W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~ 343 (464)
.++.+|+.+++ |+.-.+ .... ....+.+ ++ +|+..+. ..+..+|+.+
T Consensus 116 ~l~ald~~tG~~~W~~~~~--~~~~-~~p~v~~----------------~~--v~v~~~~----------g~l~a~d~~t 164 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLS--SEVL-SPPLVAN----------------GL--VVVRTND----------GRLTALDAAT 164 (377)
T ss_pred EEEEEECCCCcEeeeeccC--ceee-cCCEEEC----------------CE--EEEECCC----------CeEEEEEcCC
Confidence 58899998775 865321 1111 1111111 21 4443321 2356778776
Q ss_pred Cc--ccccCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCC--cEEEeccCCCCC------
Q 046692 344 DG--FEGSLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPVDF------ 413 (464)
Q Consensus 344 n~--W~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~--~W~~v~~~p~~~------ 413 (464)
.+ |+........... .....+..++.+|+ |..+ ..+..+|+.+. .|+.-...+...
T Consensus 165 G~~~W~~~~~~~~~~~~-------~~~sp~~~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 165 GERLWTYSRVTPALTLR-------GSASPVIADGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred CceeeEEccCCCceeec-------CCCCCEEECCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 54 6652111110000 00122344565554 3322 25788998776 486532222110
Q ss_pred -CcceEEeEECCEEEEEeCCCceEEEeCCCC--cEEE
Q 046692 414 -GVVSSGVVCNGIFYVYSETDKLAGYDIERG--FWIG 447 (464)
Q Consensus 414 -~~~~~~v~~~g~lYViGG~~~v~~YD~~~~--~W~~ 447 (464)
......++.++.+|+.+....+.+||++++ .|..
T Consensus 231 ~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 231 VDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred hccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 011223467899999877778999999876 4765
No 62
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=94.88 E-value=0.53 Score=45.48 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=55.4
Q ss_pred cCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCC--------CC--ccccccceeeecCCCccccc
Q 046692 280 VASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVY--------ED--PHRLSLRRQYRNSFDGFEGS 349 (464)
Q Consensus 280 l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~--------~~--~~~l~~ve~Ydp~~n~W~~~ 349 (464)
+.+.|.+|+.|++.++... ||-...+|||++-.- ++ ......|...|.++...+.-
T Consensus 81 vGdvP~aRYGHt~~vV~Sr--------------GKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah 146 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSR--------------GKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAH 146 (337)
T ss_pred cCCCCcccccceEEEEEEC--------------CcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccc
Confidence 4688999999999888644 565788999975320 00 11234456668888887774
Q ss_pred CCCCCC-ccceecccccccccccccCcEEEEEcCCC
Q 046692 350 LLPNRK-SYKFIRQKSDQSITKASKRFVLIAVGGLG 384 (464)
Q Consensus 350 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~iyviGG~~ 384 (464)
.+|.-. +..| +.+...++.+|++||..
T Consensus 147 ~lpEl~dG~SF--------Hvslar~D~VYilGGHs 174 (337)
T PF03089_consen 147 TLPELQDGQSF--------HVSLARNDCVYILGGHS 174 (337)
T ss_pred cchhhcCCeEE--------EEEEecCceEEEEccEE
Confidence 444443 3333 44567789999999974
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.43 E-value=0.9 Score=44.98 Aligned_cols=51 Identities=29% Similarity=0.434 Sum_probs=40.9
Q ss_pred chhhhhhcccCCCCCh----HHHHHHHHhhCCcchhhhhhccccccccccCCchHH
Q 046692 129 ELEDSVRNSRMHIFLP----DDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFL 180 (464)
Q Consensus 129 ~l~~ll~~vrl~~~lp----~dl~~~iL~rLp~~sl~~~~~vck~W~~l~~~~~f~ 180 (464)
|+..+|+. .|...+| +.+.++||+.|...+|..+..+||+|+.+...+...
T Consensus 65 ~~rpmLqr-DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~W 119 (499)
T KOG0281|consen 65 YLKPMLQR-DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLW 119 (499)
T ss_pred HHHHHHHH-HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHH
Confidence 33334433 5667788 999999999999999999999999999988776643
No 64
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.02 E-value=5.7 Score=37.69 Aligned_cols=197 Identities=12% Similarity=0.019 Sum_probs=102.5
Q ss_pred CCeEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEE--CCEEEEEcCCcCCccCccccCCCccccceE
Q 046692 190 NPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSI--MDDVYVVGGCSSLTSFGRVDRSSFKTHKGV 267 (464)
Q Consensus 190 ~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~--~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v 267 (464)
++.||+..- ....++.+|+.+.+-..+.. +. ..+++.. ++.+||.... ..
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~-~~----~~G~~~~~~~g~l~v~~~~------------------~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL-PG----PNGMAFDRPDGRLYVADSG------------------GI 62 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES-SS----EEEEEEECTTSEEEEEETT------------------CE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec-CC----CceEEEEccCCEEEEEEcC------------------ce
Confidence 456666632 23478999999988766544 11 2344444 7888888651 24
Q ss_pred EEEeCCCCCeeecCCCCC---CccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCC
Q 046692 268 LVFSPLTKSWRKVASMRY---ARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFD 344 (464)
Q Consensus 268 ~vydp~t~~W~~l~~m~~---~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n 344 (464)
.++|+.+++++.+...+. +...+--.+++.+ |+ ||+-.-.... ........+.++++. .
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--------------G~--ly~t~~~~~~-~~~~~~g~v~~~~~~-~ 124 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--------------GN--LYVTDSGGGG-ASGIDPGSVYRIDPD-G 124 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--------------S---EEEEEECCBC-TTCGGSEEEEEEETT-S
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--------------CC--EEEEecCCCc-cccccccceEEECCC-C
Confidence 667999999988776532 2233323344433 33 4543211100 000011456667776 4
Q ss_pred cccc--cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCc--EEE---eccCCCCCCcce
Q 046692 345 GFEG--SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNK--WME---IQRLPVDFGVVS 417 (464)
Q Consensus 345 ~W~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~--W~~---v~~~p~~~~~~~ 417 (464)
+.+. ..+..+.+-. ..--+..||+.--. ...++.||+.... +.. +..++...+...
T Consensus 125 ~~~~~~~~~~~pNGi~-----------~s~dg~~lyv~ds~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 125 KVTVVADGLGFPNGIA-----------FSPDGKTLYVADSF------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp EEEEEEEEESSEEEEE-----------EETTSSEEEEEETT------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred eEEEEecCcccccceE-----------ECCcchheeecccc------cceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence 4333 2222221111 11223468876543 3468899886443 432 334444332233
Q ss_pred EE-eEECCEEEEEe-CCCceEEEeCCCCcEEEcc
Q 046692 418 SG-VVCNGIFYVYS-ETDKLAGYDIERGFWIGIQ 449 (464)
Q Consensus 418 ~~-v~~~g~lYViG-G~~~v~~YD~~~~~W~~l~ 449 (464)
.. +--+|.|||.. +.+.|.+||++-..-..+.
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence 22 22378999874 5679999999955554444
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.79 E-value=0.77 Score=45.02 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCCCCccCceEEEeCCCCcEEEecc-C----CCCCCcceEEeE---ECCEEEEEeC----CCceEEEeCCC
Q 046692 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQR-L----PVDFGVVSSGVV---CNGIFYVYSE----TDKLAGYDIER 442 (464)
Q Consensus 375 ~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~-~----p~~~~~~~~~v~---~~g~lYViGG----~~~v~~YD~~~ 442 (464)
++||+.|-..........+-.||..+.+|+.+.. . |.+. .+.++ -...+++.|. ...+..|| -
T Consensus 48 ~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv---~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--G 122 (281)
T PF12768_consen 48 NQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV---TALTFISNDGSNFWVAGRSANGSTFLMKYD--G 122 (281)
T ss_pred CEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcE---EEEEeeccCCceEEEeceecCCCceEEEEc--C
Confidence 4677777553322234567889999999998865 2 2221 12112 2345776663 45788886 5
Q ss_pred CcEEEccc
Q 046692 443 GFWIGIQT 450 (464)
Q Consensus 443 ~~W~~l~~ 450 (464)
.+|..+..
T Consensus 123 s~W~~i~~ 130 (281)
T PF12768_consen 123 SSWSSIGS 130 (281)
T ss_pred CceEeccc
Confidence 58998877
No 66
>smart00284 OLF Olfactomedin-like domains.
Probab=92.38 E-value=7.4 Score=37.53 Aligned_cols=78 Identities=9% Similarity=0.032 Sum_probs=44.4
Q ss_pred CCeEEEeccccCCccccceEEee----CCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccc
Q 046692 190 NPWLFLFGAVKDGYCSGEIHALD----VSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHK 265 (464)
Q Consensus 190 ~~~l~v~GG~~~~~~~~~v~~yD----~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~ 265 (464)
++.++++.+.. ...+.+..|. ....++.+.-. +|.+-.+-+.++.+|.+|.--. ...
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~-Lp~~~~GtG~VVYngslYY~~~----------------~s~ 94 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHP-LPHAGQGTGVVVYNGSLYFNKF----------------NSH 94 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEE-CCCccccccEEEECceEEEEec----------------CCc
Confidence 46788876642 1122344442 23333322111 3444556678888999987644 235
Q ss_pred eEEEEeCCCCCeeecCCCCCC
Q 046692 266 GVLVFSPLTKSWRKVASMRYA 286 (464)
Q Consensus 266 ~v~vydp~t~~W~~l~~m~~~ 286 (464)
.+.+||..+++=.....+|.+
T Consensus 95 ~iiKydL~t~~v~~~~~Lp~a 115 (255)
T smart00284 95 DICRFDLTTETYQKEPLLNGA 115 (255)
T ss_pred cEEEEECCCCcEEEEEecCcc
Confidence 699999999886544445533
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.66 E-value=20 Score=37.14 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCCCceEEEe
Q 046692 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYD 439 (464)
Q Consensus 375 ~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~~v~~YD 439 (464)
+.-.+.||.++ .|-+|| +..|..+..+..+-.....++.-++.-.|+|..|.+..+-
T Consensus 250 ~~rLlS~sLD~------~VKVfd--~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 250 STRLLSGSLDR------HVKVFD--TTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred CceEeeccccc------ceEEEE--ccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 34455566655 578998 5568888776665444444556688888898877666554
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.09 E-value=18 Score=37.35 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=41.1
Q ss_pred CCCCeEEEeccccCCccccceEEeeCCCCceeeccccccCCC---cceEEEEECCEEEEEcCCcCCccCccccCCCcccc
Q 046692 188 HQNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGR---FMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTH 264 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R---~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~ 264 (464)
....-+++++|.+.. -.++..|-.+|. .+.+ +.-.+ ....++.-+....+++|. .
T Consensus 222 Hp~~plllvaG~d~~---lrifqvDGk~N~--~lqS-~~l~~fPi~~a~f~p~G~~~i~~s~r----------------r 279 (514)
T KOG2055|consen 222 HPTAPLLLVAGLDGT---LRIFQVDGKVNP--KLQS-IHLEKFPIQKAEFAPNGHSVIFTSGR----------------R 279 (514)
T ss_pred cCCCceEEEecCCCc---EEEEEecCccCh--hhee-eeeccCccceeeecCCCceEEEeccc----------------c
Confidence 334556777776543 245556666665 3333 22112 122222223336677773 2
Q ss_pred ceEEEEeCCCCCeeecCCC
Q 046692 265 KGVLVFSPLTKSWRKVASM 283 (464)
Q Consensus 265 ~~v~vydp~t~~W~~l~~m 283 (464)
.-++.||..+.+-.++.++
T Consensus 280 ky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred eEEEEeeccccccccccCC
Confidence 3479999999988887764
No 69
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=87.38 E-value=0.11 Score=42.36 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=26.7
Q ss_pred cccccC--ccccchhhhhhcccCCCCChHHHHH
Q 046692 119 FWKKSN--RKYLELEDSVRNSRMHIFLPDDILE 149 (464)
Q Consensus 119 ~W~~~~--~r~~~l~~ll~~vrl~~~lp~dl~~ 149 (464)
+|++|+ .|..++.+|+++||++.+.+++|.+
T Consensus 68 ~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~L~~ 100 (103)
T PF07707_consen 68 RWLKHNPENREEHLKELLSCIRFPLLSPEELQN 100 (103)
T ss_dssp HHHHCTHHHHTTTHHHHHCCCHHHCT-HHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCCcccCCHHHHHH
Confidence 499999 4778999999999999999988876
No 70
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=87.23 E-value=5.1 Score=38.93 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=61.9
Q ss_pred CeEEEeccccCC-ccccceEEeeCCCCc---e-------eeccccccCCCcceEEEEE----CCEEEEEcCCcCCccCcc
Q 046692 191 PWLFLFGAVKDG-YCSGEIHALDVSQDQ---W-------HRIDASILKGRFMFSVVSI----MDDVYVVGGCSSLTSFGR 255 (464)
Q Consensus 191 ~~l~v~GG~~~~-~~~~~v~~yD~~t~~---W-------~~l~~~~~~~R~~~s~~~~----~~~IYVvGG~~gl~~~~~ 255 (464)
...++-||..++ ..+..+|.....+.. = ..+....|.+|++|++-++ ..-+.++||.+-...-.+
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 445566776643 344556655443322 1 1222347899999998776 334667788642111000
Q ss_pred ccC---CCccccceEEEEeCCCCCeee--cCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcC
Q 046692 256 VDR---SSFKTHKGVLVFSPLTKSWRK--VASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVS 324 (464)
Q Consensus 256 ~~~---~~~~~~~~v~vydp~t~~W~~--l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~ 324 (464)
... +...-.-.|+..|+.-+-.+. +|.+...-+.|...+-++ .+|++||-+
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D------------------~VYilGGHs 174 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARND------------------CVYILGGHS 174 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCc------------------eEEEEccEE
Confidence 000 001122346777777776543 566665655554444332 599999953
No 71
>PRK13684 Ycf48-like protein; Provisional
Probab=86.99 E-value=31 Score=34.64 Aligned_cols=173 Identities=13% Similarity=0.163 Sum_probs=87.2
Q ss_pred eEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEE-EeCCCCCeeecCCCCCC
Q 046692 208 IHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLV-FSPLTKSWRKVASMRYA 286 (464)
Q Consensus 208 v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~v-ydp~t~~W~~l~~m~~~ 286 (464)
++.=+-.-.+|+.+... . .-..+.+....+..|++.|..| .++. .|....+|+.++. +..
T Consensus 154 i~~S~DgG~tW~~~~~~-~-~g~~~~i~~~~~g~~v~~g~~G----------------~i~~s~~~gg~tW~~~~~-~~~ 214 (334)
T PRK13684 154 IYRTTDGGKNWEALVED-A-AGVVRNLRRSPDGKYVAVSSRG----------------NFYSTWEPGQTAWTPHQR-NSS 214 (334)
T ss_pred EEEECCCCCCceeCcCC-C-cceEEEEEECCCCeEEEEeCCc----------------eEEEEcCCCCCeEEEeeC-CCc
Confidence 44444455789998762 2 2234455555555555555221 1222 2445567988754 444
Q ss_pred ccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceee--ecCCCcccccCCCCC-Cccceeccc
Q 046692 287 RSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQY--RNSFDGFEGSLLPNR-KSYKFIRQK 363 (464)
Q Consensus 287 R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Y--dp~~n~W~~~~l~~~-~~~~~~~~~ 363 (464)
+...+++...+ ++ ++++|.... ..+ +..-.+|+....|.. ..+.+
T Consensus 215 ~~l~~i~~~~~---------------g~--~~~vg~~G~-----------~~~~s~d~G~sW~~~~~~~~~~~~~l---- 262 (334)
T PRK13684 215 RRLQSMGFQPD---------------GN--LWMLARGGQ-----------IRFNDPDDLESWSKPIIPEITNGYGY---- 262 (334)
T ss_pred ccceeeeEcCC---------------CC--EEEEecCCE-----------EEEccCCCCCccccccCCccccccce----
Confidence 44444444332 22 566654211 112 122346886444422 12211
Q ss_pred cccccccc-ccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccC-CCCCCcceEEeEECCEEEEEeCCCceEEEeCC
Q 046692 364 SDQSITKA-SKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRL-PVDFGVVSSGVVCNGIFYVYSETDKLAGYDIE 441 (464)
Q Consensus 364 ~~~~~~~~-~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~-p~~~~~~~~~v~~~g~lYViGG~~~v~~YD~~ 441 (464)
.+.+ ..++.+|++|..+. +..-...-.+|+.+... ..+.........-+++.|+.|....|..|+..
T Consensus 263 ----~~v~~~~~~~~~~~G~~G~-------v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 263 ----LDLAYRTPGEIWAGGGNGT-------LLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred ----eeEEEcCCCCEEEEcCCCe-------EEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecCC
Confidence 1111 22567888876432 22223334699997431 12222333333447889999888899999876
Q ss_pred C
Q 046692 442 R 442 (464)
Q Consensus 442 ~ 442 (464)
.
T Consensus 332 ~ 332 (334)
T PRK13684 332 A 332 (334)
T ss_pred C
Confidence 4
No 72
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.37 E-value=4 Score=40.06 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=42.5
Q ss_pred cCceEEEeCCCCcEEEeccCCCCCCcceEEeEE-CCEEEEEeC-------CCceEEEeCCCCcEEEccc
Q 046692 390 LDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVC-NGIFYVYSE-------TDKLAGYDIERGFWIGIQT 450 (464)
Q Consensus 390 l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~-~g~lYViGG-------~~~v~~YD~~~~~W~~l~~ 450 (464)
...+-.||+.+.+|..+..= -.+........ +++||+.|. ...+..||.++..|..+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 55788899999999998642 11222223333 788888873 2368999999999998877
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.25 E-value=0.49 Score=46.32 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=35.1
Q ss_pred CCCChHHHHHHHHhhCCcchhhhhhccccccccccCCch
Q 046692 140 HIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPR 178 (464)
Q Consensus 140 ~~~lp~dl~~~iL~rLp~~sl~~~~~vck~W~~l~~~~~ 178 (464)
+-.+||+|++.|++.|+.+++++...||++|+.+.....
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 567899999999999999999999999999998876544
No 74
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.23 E-value=53 Score=32.96 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=47.3
Q ss_pred EeccccCC-ccccceEEeeCCCCceeeccccccCCC-cceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeC
Q 046692 195 LFGAVKDG-YCSGEIHALDVSQDQWHRIDASILKGR-FMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSP 272 (464)
Q Consensus 195 v~GG~~~~-~~~~~v~~yD~~t~~W~~l~~~~~~~R-~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp 272 (464)
++|++..+ ...-.++.||..+.++..+........ ...++..-++.||++..... + ...-..+..++
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~-------~----~g~v~~~~i~~ 71 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG-------D----SGGVSSYRIDP 71 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS-------T----TTEEEEEEEET
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc-------C----CCCEEEEEECC
Confidence 45555431 112245667889999988765211111 11222224788999966210 0 11122455566
Q ss_pred CCCCeeecCCCCCCccccEEEEecCC
Q 046692 273 LTKSWRKVASMRYARSMPILGISEVS 298 (464)
Q Consensus 273 ~t~~W~~l~~m~~~R~~~~~~~~~~~ 298 (464)
.+++.+.+...+..-..++...+..+
T Consensus 72 ~~g~L~~~~~~~~~g~~p~~i~~~~~ 97 (345)
T PF10282_consen 72 DTGTLTLLNSVPSGGSSPCHIAVDPD 97 (345)
T ss_dssp TTTEEEEEEEEEESSSCEEEEEECTT
T ss_pred CcceeEEeeeeccCCCCcEEEEEecC
Confidence 66788887766644444444444433
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.44 E-value=20 Score=37.20 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=37.4
Q ss_pred CcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCCCceEEEeCCCC
Q 046692 374 RFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERG 443 (464)
Q Consensus 374 ~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~~v~~YD~~~~ 443 (464)
++.|++.||+++ .|-.||..+.+ ..+..+......-...+.-+|.+++..|-+.|-.+|..++
T Consensus 165 ~~hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 165 NDHIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred CCeEEEecCCCc------eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC
Confidence 457999999877 57889998874 3343443322222222233556666655566777776543
No 76
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.20 E-value=51 Score=31.75 Aligned_cols=69 Identities=7% Similarity=0.016 Sum_probs=39.5
Q ss_pred CCCeEEEeccccCCccccceEEeeC-----CCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccc
Q 046692 189 QNPWLFLFGAVKDGYCSGEIHALDV-----SQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKT 263 (464)
Q Consensus 189 ~~~~l~v~GG~~~~~~~~~v~~yD~-----~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~ 263 (464)
..+.+|++.+.... .+..|.- ..++..+.-. +|.+-.+-+.++.+|.+|---. .
T Consensus 29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~-Lp~~~~GtG~vVYngslYY~~~----------------~ 87 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYK-LPYPWQGTGHVVYNGSLYYNKY----------------N 87 (250)
T ss_pred CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEE-EeceeccCCeEEECCcEEEEec----------------C
Confidence 45778888875543 3444422 2222222212 3334445566677777765532 2
Q ss_pred cceEEEEeCCCCCee
Q 046692 264 HKGVLVFSPLTKSWR 278 (464)
Q Consensus 264 ~~~v~vydp~t~~W~ 278 (464)
.+.+.+||..+++=.
T Consensus 88 s~~IvkydL~t~~v~ 102 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVV 102 (250)
T ss_pred CceEEEEECcCCcEE
Confidence 467999999998754
No 77
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=78.02 E-value=63 Score=30.54 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=34.8
Q ss_pred eEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEE-EC-CEEEEEcCCcCCccCccccCCCccccceEEE
Q 046692 192 WLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVS-IM-DDVYVVGGCSSLTSFGRVDRSSFKTHKGVLV 269 (464)
Q Consensus 192 ~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~-~~-~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~v 269 (464)
.+|+.++.+ +.+..||+.+++-...-.....++ +++. .+ ..+|+.++. .+.+.+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~----------------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD----------------SDTIQV 57 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC----------------CCeEEE
Confidence 356665532 368889988776433222111121 2222 23 457777661 235889
Q ss_pred EeCCCCCeee
Q 046692 270 FSPLTKSWRK 279 (464)
Q Consensus 270 ydp~t~~W~~ 279 (464)
||+.+++...
T Consensus 58 ~d~~~~~~~~ 67 (300)
T TIGR03866 58 IDLATGEVIG 67 (300)
T ss_pred EECCCCcEEE
Confidence 9998876543
No 78
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=76.80 E-value=1.2 Score=35.59 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=24.7
Q ss_pred cccccC--ccccchhhhhhcccCCCCChHHHHH
Q 046692 119 FWKKSN--RKYLELEDSVRNSRMHIFLPDDILE 149 (464)
Q Consensus 119 ~W~~~~--~r~~~l~~ll~~vrl~~~lp~dl~~ 149 (464)
+|++|+ ++. ++.++++++|++++.++++..
T Consensus 68 ~W~~~~~~~~~-~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 68 RWVKHDPERRR-HLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHCCHHHHH-HHHHHHHhCCCCCCCHHHHHh
Confidence 499999 344 899999999999998877643
No 79
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=76.64 E-value=17 Score=30.82 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCCeEEEeccccCCccccceEEeeCCCCceeecccc--ccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccce
Q 046692 189 QNPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDAS--ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKG 266 (464)
Q Consensus 189 ~~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~--~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~ 266 (464)
.++.+|-.... .......+.+||..+.+|+.++.| .........++.++|+|-++.-.. .. ....-+
T Consensus 4 inGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~---------~~-~~~~~~ 72 (129)
T PF08268_consen 4 INGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYND---------QG-EPDSID 72 (129)
T ss_pred ECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecC---------CC-CcceEE
Confidence 35566655544 223456789999999999998763 234455667788888888875521 10 012346
Q ss_pred EEEE-eCCCCCeeec
Q 046692 267 VLVF-SPLTKSWRKV 280 (464)
Q Consensus 267 v~vy-dp~t~~W~~l 280 (464)
+|+. |..+++|.+.
T Consensus 73 iWvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 73 IWVLEDYEKQEWSKK 87 (129)
T ss_pred EEEeeccccceEEEE
Confidence 7777 5667889864
No 80
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=76.48 E-value=77 Score=30.76 Aligned_cols=149 Identities=15% Similarity=0.083 Sum_probs=81.0
Q ss_pred EEEE-ECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCC
Q 046692 233 SVVS-IMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQ 311 (464)
Q Consensus 233 s~~~-~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 311 (464)
+... .++.+|.--|..| .+.+.+||+.|++=..-.+++..-..-+++.+++
T Consensus 49 GL~~~~~g~LyESTG~yG--------------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-------------- 100 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG--------------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-------------- 100 (264)
T ss_dssp EEEEEETTEEEEEECSTT--------------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--------------
T ss_pred cEEecCCCEEEEeCCCCC--------------cEEEEEEECCCCcEEEEEECCccccceeEEEECC--------------
Confidence 4444 5789998877422 3578999999998766666766556666677763
Q ss_pred CCccceEEecCcCCCCCCccccccceeeecCCCcccc-cCCCC-CCccceecccccccccccccCcEEEEEcCCCCCCCc
Q 046692 312 DRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-SLLPN-RKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEP 389 (464)
Q Consensus 312 ~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~ 389 (464)
+ ||.+==.+ .....||+.+ .+. ...+. ..+|+. +..+..||+..|.
T Consensus 101 --~--l~qLTWk~---------~~~f~yd~~t--l~~~~~~~y~~EGWGL-----------t~dg~~Li~SDGS------ 148 (264)
T PF05096_consen 101 --K--LYQLTWKE---------GTGFVYDPNT--LKKIGTFPYPGEGWGL-----------TSDGKRLIMSDGS------ 148 (264)
T ss_dssp --E--EEEEESSS---------SEEEEEETTT--TEEEEEEE-SSS--EE-----------EECSSCEEEE-SS------
T ss_pred --E--EEEEEecC---------CeEEEEcccc--ceEEEEEecCCcceEE-----------EcCCCEEEEECCc------
Confidence 2 66664332 3345566643 121 11111 234443 3556678888884
Q ss_pred cCceEEEeCCCCcEEEeccCCC-----CCCcceEEeEECCEEEE-EeCCCceEEEeCCCCc
Q 046692 390 LDSGEIYDSVSNKWMEIQRLPV-----DFGVVSSGVVCNGIFYV-YSETDKLAGYDIERGF 444 (464)
Q Consensus 390 l~~vevYD~~t~~W~~v~~~p~-----~~~~~~~~v~~~g~lYV-iGG~~~v~~YD~~~~~ 444 (464)
+.++..||.+-+ ....+.. +.....-.-.++|.||. +=-++.|.+-||+++.
T Consensus 149 -~~L~~~dP~~f~--~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 149 -SRLYFLDPETFK--EVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp -SEEEEE-TTT-S--EEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-B
T ss_pred -cceEEECCcccc--eEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCe
Confidence 467889987543 2222221 11111222356888885 3356889999999985
No 81
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.83 E-value=1.7e+02 Score=34.44 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=43.3
Q ss_pred cCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCC-----------CCCcceE-EeEECCEEEEEe-CCCceEEEe
Q 046692 373 KRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPV-----------DFGVVSS-GVVCNGIFYVYS-ETDKLAGYD 439 (464)
Q Consensus 373 ~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~-----------~~~~~~~-~v~~~g~lYViG-G~~~v~~YD 439 (464)
.++.|||....+ ..|.+||+.++..+.+..... ....... ++.-+|.+||.. +.+.|..+|
T Consensus 813 ~dG~LYVADs~N------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 813 KDGQIYVADSYN------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred CCCcEEEEECCC------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 456799987543 378999999988877654221 1112222 223478899986 456889999
Q ss_pred CCCCc
Q 046692 440 IERGF 444 (464)
Q Consensus 440 ~~~~~ 444 (464)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 98865
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=75.66 E-value=51 Score=35.48 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=39.8
Q ss_pred ccCcEEEEEcCCCCCCCccCceEEEeCCCC--cEEEec-cCCCCCCcceEEeEECCEEEEEeC------CCceEEEeCCC
Q 046692 372 SKRFVLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQ-RLPVDFGVVSSGVVCNGIFYVYSE------TDKLAGYDIER 442 (464)
Q Consensus 372 ~~~~~iyviGG~~~~~~~l~~vevYD~~t~--~W~~v~-~~p~~~~~~~~~v~~~g~lYViGG------~~~v~~YD~~~ 442 (464)
+.+++||+... + ..+.++|..+. .|+.-. .+.......++-++.++++|+-.. ...|.+||.++
T Consensus 118 v~~~~v~v~t~-d------g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~T 190 (527)
T TIGR03075 118 LYDGKVFFGTL-D------ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKT 190 (527)
T ss_pred EECCEEEEEcC-C------CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCC
Confidence 44557776332 1 25678888766 476532 222112222333577999887532 24799999988
Q ss_pred C--cEEE
Q 046692 443 G--FWIG 447 (464)
Q Consensus 443 ~--~W~~ 447 (464)
+ .|+.
T Consensus 191 G~~lW~~ 197 (527)
T TIGR03075 191 GKLVWRR 197 (527)
T ss_pred CceeEec
Confidence 7 4764
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=73.86 E-value=1.2e+02 Score=32.80 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=39.6
Q ss_pred hhhhcccCCCCChHHHHHHHHhhCCcchhhhhhccccccccccCCch
Q 046692 132 DSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPR 178 (464)
Q Consensus 132 ~ll~~vrl~~~lp~dl~~~iL~rLp~~sl~~~~~vck~W~~l~~~~~ 178 (464)
+-+...+|...||.++...||..|+..++++...+|+.|+.+.....
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccc
Confidence 33445578889999999999999999999999999999998876544
No 84
>PRK13684 Ycf48-like protein; Provisional
Probab=73.35 E-value=1.1e+02 Score=30.83 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=38.7
Q ss_pred cCcEEEEEcCCCCCCCccCceEEEe--CCCCcEEEeccCCCC---CCcceEEeEECCEEEEEeCCCceEEEeCCCCcEEE
Q 046692 373 KRFVLIAVGGLGSWDEPLDSGEIYD--SVSNKWMEIQRLPVD---FGVVSSGVVCNGIFYVYSETDKLAGYDIERGFWIG 447 (464)
Q Consensus 373 ~~~~iyviGG~~~~~~~l~~vevYD--~~t~~W~~v~~~p~~---~~~~~~~v~~~g~lYViGG~~~v~~YD~~~~~W~~ 447 (464)
.++.++++|..+. ..+. -.-.+|+.+. +|.. ......+..-++.+|++|....+..-...-..|+.
T Consensus 224 ~~g~~~~vg~~G~--------~~~~s~d~G~sW~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~ 294 (334)
T PRK13684 224 PDGNLWMLARGGQ--------IRFNDPDDLESWSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEK 294 (334)
T ss_pred CCCCEEEEecCCE--------EEEccCCCCCcccccc-CCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeE
Confidence 4567888875321 2342 2234899763 3421 22222222236789998876666655555679998
Q ss_pred ccc
Q 046692 448 IQT 450 (464)
Q Consensus 448 l~~ 450 (464)
+..
T Consensus 295 ~~~ 297 (334)
T PRK13684 295 DPV 297 (334)
T ss_pred CCc
Confidence 754
No 85
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=72.16 E-value=1e+02 Score=30.29 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCCCCccCceEEEeCCCCc-EEEe----ccCCCCCCcceEEeEEC-CEEEEEeC-CCceEEEeCC--CCcE
Q 046692 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNK-WMEI----QRLPVDFGVVSSGVVCN-GIFYVYSE-TDKLAGYDIE--RGFW 445 (464)
Q Consensus 375 ~~iyviGG~~~~~~~l~~vevYD~~t~~-W~~v----~~~p~~~~~~~~~v~~~-g~lYViGG-~~~v~~YD~~--~~~W 445 (464)
..+|+..-. .+.+.+||..++. -... ...+...+-...+..-+ ..+||... .+.|..||.. ++++
T Consensus 138 ~~l~v~~~~------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 138 RTLWVPCLK------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred CEEEEeeCC------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 456665532 3478999987632 2110 01122111111121223 46788754 6788888876 4455
Q ss_pred EEc
Q 046692 446 IGI 448 (464)
Q Consensus 446 ~~l 448 (464)
+.+
T Consensus 212 ~~~ 214 (330)
T PRK11028 212 ECV 214 (330)
T ss_pred EEE
Confidence 443
No 86
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=70.04 E-value=1.1e+02 Score=30.00 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=32.4
Q ss_pred cEEEEEcCCCCCCCccCceEEEeCCCCc--EEEeccCCCCCCcceEEeEEC-CEEEEEe-CCCceEEEeCCCC
Q 046692 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNK--WMEIQRLPVDFGVVSSGVVCN-GIFYVYS-ETDKLAGYDIERG 443 (464)
Q Consensus 375 ~~iyviGG~~~~~~~l~~vevYD~~t~~--W~~v~~~p~~~~~~~~~v~~~-g~lYViG-G~~~v~~YD~~~~ 443 (464)
..||+.... -+.+.+||..++. ...+..++.....++.+..-+ ..+|+.. +.+.|..||+.++
T Consensus 92 ~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 92 RFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 457766432 2367788876431 122222222112222222223 4677765 4578999998763
No 87
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=69.46 E-value=1.1e+02 Score=29.72 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=34.1
Q ss_pred cccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcce-EEeEECCEEEEEe
Q 046692 369 TKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVS-SGVVCNGIFYVYS 430 (464)
Q Consensus 369 ~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~-~~v~~~g~lYViG 430 (464)
+.-.++++||+.--....+..-..+..-+..-..|+.+ .+|....... ..+.+++.||++|
T Consensus 195 CvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~sl-rfp~nvHhtnlPFakvgD~l~mFg 256 (367)
T PF12217_consen 195 CVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSL-RFPNNVHHTNLPFAKVGDVLYMFG 256 (367)
T ss_dssp EEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEE-E-TT---SS---EEEETTEEEEEE
T ss_pred hhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhc-cccccccccCCCceeeCCEEEEEe
Confidence 44578899999863322223344566667777789988 4554221111 1357899999998
No 88
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=68.70 E-value=1.1e+02 Score=30.25 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=39.2
Q ss_pred cceEEeeCCCC-----ceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCC-eee
Q 046692 206 GEIHALDVSQD-----QWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKS-WRK 279 (464)
Q Consensus 206 ~~v~~yD~~t~-----~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~-W~~ 279 (464)
..++.|+.... ++..+.. ...+-.-.+++.+++.|.+.-| +.+.+|+...++ +..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~~~~lv~~~g------------------~~l~v~~l~~~~~l~~ 122 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSFNGRLVVAVG------------------NKLYVYDLDNSKTLLK 122 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEETTEEEEEET------------------TEEEEEEEETTSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhhCCEEEEeec------------------CEEEEEEccCcccchh
Confidence 67889998885 5665544 2223334677788888666655 247788888777 766
Q ss_pred cCCCCC
Q 046692 280 VASMRY 285 (464)
Q Consensus 280 l~~m~~ 285 (464)
.+.+..
T Consensus 123 ~~~~~~ 128 (321)
T PF03178_consen 123 KAFYDS 128 (321)
T ss_dssp EEEE-B
T ss_pred hheecc
Confidence 655443
No 89
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=68.58 E-value=33 Score=29.00 Aligned_cols=77 Identities=18% Similarity=0.066 Sum_probs=49.3
Q ss_pred ccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccC--CCCCCcceEEeEECCEEEEEeCC-------CceEEE-eCC
Q 046692 372 SKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRL--PVDFGVVSSGVVCNGIFYVYSET-------DKLAGY-DIE 441 (464)
Q Consensus 372 ~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~--p~~~~~~~~~v~~~g~lYViGG~-------~~v~~Y-D~~ 441 (464)
+.||.+|-..-.. ......+..||..+.+|+.+... +.........+.++|+|-++.-. -.|+.. |-+
T Consensus 3 cinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 5678888776651 13356789999999999988432 12222223346889999887521 134444 566
Q ss_pred CCcEEEccc
Q 046692 442 RGFWIGIQT 450 (464)
Q Consensus 442 ~~~W~~l~~ 450 (464)
+++|.....
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 789997644
No 90
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=68.50 E-value=9.9 Score=25.02 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=18.5
Q ss_pred eEECCEEEEEeCCCceEEEeCCC
Q 046692 420 VVCNGIFYVYSETDKLAGYDIER 442 (464)
Q Consensus 420 v~~~g~lYViGG~~~v~~YD~~~ 442 (464)
++.+|.+|+.+....++++|+++
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT-
T ss_pred EEECCEEEEEcCCCEEEEEeCCC
Confidence 57799999998888999999874
No 91
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=68.11 E-value=1.6e+02 Score=30.92 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.7
Q ss_pred ceEEeeCCCCceeeccc
Q 046692 207 EIHALDVSQDQWHRIDA 223 (464)
Q Consensus 207 ~v~~yD~~t~~W~~l~~ 223 (464)
++|.|||.+.+-.++.-
T Consensus 288 dIylydP~td~lekldI 304 (668)
T COG4946 288 DIYLYDPETDSLEKLDI 304 (668)
T ss_pred cEEEeCCCcCcceeeec
Confidence 79999999999887754
No 92
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.89 E-value=2.2e+02 Score=32.26 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=30.8
Q ss_pred cccceeeecCCCc--ccccCC-CCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCc
Q 046692 333 LSLRRQYRNSFDG--FEGSLL-PNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNK 402 (464)
Q Consensus 333 l~~ve~Ydp~~n~--W~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~ 402 (464)
...+..||..+.+ |+.... |... . ....+..|..||-+.| ....||++++.
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~--~------------~~~~g~~~~~gg~n~W-----~~~s~D~~~gl 388 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPT--A------------PPAPGETYTRNTPNSW-----SVASYDEKLGL 388 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcc--c------------CCCCCCEeccCCCCcc-----CceEEcCCCCe
Confidence 4567889998886 766221 1110 0 1124567887776555 45678888875
No 93
>PRK04792 tolB translocation protein TolB; Provisional
Probab=67.15 E-value=1.7e+02 Score=30.67 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=32.9
Q ss_pred CceEEEeCCCCcEEEeccCCCCCCcceEEeEECC-EEEEEe---CCCceEEEeCCCCcEEEccc
Q 046692 391 DSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNG-IFYVYS---ETDKLAGYDIERGFWIGIQT 450 (464)
Q Consensus 391 ~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g-~lYViG---G~~~v~~YD~~~~~W~~l~~ 450 (464)
..++.+|..+++++.+.. ...... .....-+| .||+.+ +...|+.+|+.++..+.+..
T Consensus 330 ~~Iy~~dl~~g~~~~Lt~-~g~~~~-~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 330 PQIYRVNLASGKVSRLTF-EGEQNL-GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS 391 (448)
T ss_pred ceEEEEECCCCCEEEEec-CCCCCc-CeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC
Confidence 367788888888877742 111111 11222244 455543 23468888988888776654
No 94
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=66.66 E-value=71 Score=32.18 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=41.2
Q ss_pred cCcEEEEEc---CCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECC--EEEEEe-CCCceEEEeCCCCcE
Q 046692 373 KRFVLIAVG---GLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNG--IFYVYS-ETDKLAGYDIERGFW 445 (464)
Q Consensus 373 ~~~~iyviG---G~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g--~lYViG-G~~~v~~YD~~~~~W 445 (464)
..++||+.- +.+.+..+-..||+||+.+.+ .+..++......+..+.-++ .||.+. +...+..||..+++-
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 457899875 223444556799999999986 44444432212122233344 467654 456899999999853
No 95
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=66.48 E-value=2.7 Score=42.78 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=31.7
Q ss_pred CCCChHHHHHHHHhhCC-cchhhhhhccccccccccCC
Q 046692 140 HIFLPDDILEMCLVRLP-LTSLMNARLVCKKWRYLTTT 176 (464)
Q Consensus 140 ~~~lp~dl~~~iL~rLp-~~sl~~~~~vck~W~~l~~~ 176 (464)
|..||+||+..|..+|| ..++.+++.+|+.|++....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 56799999999999995 56899999999999876543
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=66.39 E-value=30 Score=33.20 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccC-CCCCC-cceEEeEECCEEEEEeCCC---ceEEEeCC
Q 046692 374 RFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRL-PVDFG-VVSSGVVCNGIFYVYSETD---KLAGYDIE 441 (464)
Q Consensus 374 ~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~-p~~~~-~~~~~v~~~g~lYViGG~~---~v~~YD~~ 441 (464)
+..+||+||.+. .++.||-.++. ++... ....+ .++.-..-+|.+|..|..+ .++.-.+.
T Consensus 235 ~k~~fVaGged~------~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 235 KKEFFVAGGEDF------KVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CCceEEecCcce------EEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 347999999765 46788888774 44432 11122 2222234599999998544 44444443
No 97
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=64.88 E-value=53 Score=35.13 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=12.1
Q ss_pred ceEEEEeCCCCCee
Q 046692 265 KGVLVFSPLTKSWR 278 (464)
Q Consensus 265 ~~v~vydp~t~~W~ 278 (464)
.+|+++|...+.|-
T Consensus 155 ~evYRlNLEqGrfL 168 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFL 168 (703)
T ss_pred cceEEEEccccccc
Confidence 46999999999984
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=63.84 E-value=47 Score=32.24 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=52.6
Q ss_pred cccc-cCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeC-CCceEEEeCCCCcEE
Q 046692 369 TKAS-KRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSE-TDKLAGYDIERGFWI 446 (464)
Q Consensus 369 ~~~~-~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG-~~~v~~YD~~~~~W~ 446 (464)
+... .++.||..-|..+ -+.+..||+.+++=....++|... +.-..+.++++||...- ......||+.+ .+
T Consensus 49 GL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~-FgEGit~~~d~l~qLTWk~~~~f~yd~~t--l~ 121 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRY-FGEGITILGDKLYQLTWKEGTGFVYDPNT--LK 121 (264)
T ss_dssp EEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESSSSEEEEEETTT--TE
T ss_pred cEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccc-cceeEEEECCEEEEEEecCCeEEEEcccc--ce
Confidence 3344 5689999888765 357889999999876666777643 33445789999999874 35678888864 34
Q ss_pred EcccCCC
Q 046692 447 GIQTSPF 453 (464)
Q Consensus 447 ~l~~lp~ 453 (464)
.+...+.
T Consensus 122 ~~~~~~y 128 (264)
T PF05096_consen 122 KIGTFPY 128 (264)
T ss_dssp EEEEEE-
T ss_pred EEEEEec
Confidence 4444443
No 99
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.77 E-value=2.6e+02 Score=31.67 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=22.7
Q ss_pred ccccccCcEEEEEcCCCCC----CCccCceEEEeCCCC--cEEEe
Q 046692 368 ITKASKRFVLIAVGGLGSW----DEPLDSGEIYDSVSN--KWMEI 406 (464)
Q Consensus 368 ~~~~~~~~~iyviGG~~~~----~~~l~~vevYD~~t~--~W~~v 406 (464)
.+.++.++.||+ |+.... ......+..||..|. .|+.-
T Consensus 310 s~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 310 SPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred cCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 344667777777 443211 123457889999887 47653
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=63.63 E-value=1.3e+02 Score=28.26 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=34.0
Q ss_pred CCeEEEeccccCCccccceEEeeCCCCceee-ccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEE
Q 046692 190 NPWLFLFGAVKDGYCSGEIHALDVSQDQWHR-IDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVL 268 (464)
Q Consensus 190 ~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~-l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~ 268 (464)
+..+|+.++. .+.+..||+.+.+... ++. ...+. ...+..-++.+|+.++. .+.+.
T Consensus 42 g~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~~~~g~~l~~~~~~----------------~~~l~ 98 (300)
T TIGR03866 42 GKLLYVCASD-----SDTIQVIDLATGEVIGTLPS-GPDPE-LFALHPNGKILYIANED----------------DNLVT 98 (300)
T ss_pred CCEEEEEECC-----CCeEEEEECCCCcEEEeccC-CCCcc-EEEECCCCCEEEEEcCC----------------CCeEE
Confidence 3456666542 2358889998877644 322 11111 11111124457666551 13588
Q ss_pred EEeCCCCC
Q 046692 269 VFSPLTKS 276 (464)
Q Consensus 269 vydp~t~~ 276 (464)
+||+.+.+
T Consensus 99 ~~d~~~~~ 106 (300)
T TIGR03866 99 VIDIETRK 106 (300)
T ss_pred EEECCCCe
Confidence 89988754
No 101
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.61 E-value=1.7e+02 Score=29.00 Aligned_cols=194 Identities=13% Similarity=0.149 Sum_probs=78.3
Q ss_pred CCeEEEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEE-CCEEEEEcCCcCCccCccccCCCccccceEE
Q 046692 190 NPWLFLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSI-MDDVYVVGGCSSLTSFGRVDRSSFKTHKGVL 268 (464)
Q Consensus 190 ~~~l~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~-~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~ 268 (464)
++..+++|.. ..++.-.-.-.+|.+++.+.+.+-..+.+..+ ++.++++|.. ..++
T Consensus 71 ~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-----------------G~iy 127 (302)
T PF14870_consen 71 GNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-----------------GAIY 127 (302)
T ss_dssp TTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT-------------------EE
T ss_pred CCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-----------------CcEE
Confidence 3456666531 12333333457899986433334444554444 5667666552 1245
Q ss_pred EEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCcccc
Q 046692 269 VFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG 348 (464)
Q Consensus 269 vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~ 348 (464)
+-.=.-.+|+.+..-.. -....+.... ||+ +++++.... .....||....|+.
T Consensus 128 ~T~DgG~tW~~~~~~~~-gs~~~~~r~~---------------dG~--~vavs~~G~---------~~~s~~~G~~~w~~ 180 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSETS-GSINDITRSS---------------DGR--YVAVSSRGN---------FYSSWDPGQTTWQP 180 (302)
T ss_dssp EESSTTSSEEEEE-S-----EEEEEE-T---------------TS---EEEEETTSS---------EEEEE-TT-SS-EE
T ss_pred EeCCCCCCeeEcccCCc-ceeEeEEECC---------------CCc--EEEEECccc---------EEEEecCCCccceE
Confidence 55445668987653222 1111111222 243 344443222 11345777778887
Q ss_pred cCCCCCCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEe--CCCCcEEEeccCCC---CCCcceEEeEEC
Q 046692 349 SLLPNRKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYD--SVSNKWMEIQRLPV---DFGVVSSGVVCN 423 (464)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD--~~t~~W~~v~~~p~---~~~~~~~~v~~~ 423 (464)
...+..+.-.. ++ -.-++.|+++. .++ .+..=+ -...+|.+.. .|. ..+....+..-+
T Consensus 181 ~~r~~~~riq~--------~g-f~~~~~lw~~~-~Gg------~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 181 HNRNSSRRIQS--------MG-FSPDGNLWMLA-RGG------QIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EE--SSS-EEE--------EE-E-TTS-EEEEE-TTT------EEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSS
T ss_pred EccCccceehh--------ce-ecCCCCEEEEe-CCc------EEEEccCCCCcccccccc-CCcccCceeeEEEEecCC
Confidence 32222211110 11 12345677655 333 223333 2345777732 232 222222222336
Q ss_pred CEEEEEeCCCceEEEeCCCCcEEEccc
Q 046692 424 GIFYVYSETDKLAGYDIERGFWIGIQT 450 (464)
Q Consensus 424 g~lYViGG~~~v~~YD~~~~~W~~l~~ 450 (464)
+.+++.||...+++=.-.-+.|++...
T Consensus 244 ~~~wa~gg~G~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 244 NEIWAVGGSGTLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp S-EEEEESTT-EEEESSTTSS-EE-GG
T ss_pred CCEEEEeCCccEEEeCCCCccceECcc
Confidence 899999998877766666678998764
No 102
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=60.60 E-value=2.1e+02 Score=29.59 Aligned_cols=28 Identities=7% Similarity=-0.056 Sum_probs=22.4
Q ss_pred ECCEEEEEeCCCceEEEeCCCCcEEEcc
Q 046692 422 CNGIFYVYSETDKLAGYDIERGFWIGIQ 449 (464)
Q Consensus 422 ~~g~lYViGG~~~v~~YD~~~~~W~~l~ 449 (464)
-++.+++.|....+..-...-+.|+...
T Consensus 337 ~d~~~~a~G~~G~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 337 SKKEAWAAGGSGILLRSTDGGKSWKRDK 364 (398)
T ss_pred CCCcEEEEECCCcEEEeCCCCcceeEcc
Confidence 3678999987777777777778999976
No 103
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=60.59 E-value=2e+02 Score=29.25 Aligned_cols=57 Identities=11% Similarity=-0.055 Sum_probs=32.4
Q ss_pred ceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeC----CCceEEEeCCCCcEEEccc
Q 046692 392 SGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSE----TDKLAGYDIERGFWIGIQT 450 (464)
Q Consensus 392 ~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG----~~~v~~YD~~~~~W~~l~~ 450 (464)
.++++|..+..++.+..-.. ........-+|+.+++.. ...|..||+.++.++.+..
T Consensus 303 ~iy~~d~~~~~~~~l~~~~~--~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 303 QIYMMDADGGEVRRLTFRGG--YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred eEEEEECCCCCEEEeecCCC--CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence 67778888777776642211 111112223555444432 2378999998887776653
No 104
>PLN00181 protein SPA1-RELATED; Provisional
Probab=57.14 E-value=3.3e+02 Score=30.76 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=31.5
Q ss_pred cCcEEEEEcCCCCCCCccCceEEEeCCCC----cEEEeccCCCCCCcc-eEEeEECCEEEEEeCC-CceEEEeCCC
Q 046692 373 KRFVLIAVGGLGSWDEPLDSGEIYDSVSN----KWMEIQRLPVDFGVV-SSGVVCNGIFYVYSET-DKLAGYDIER 442 (464)
Q Consensus 373 ~~~~iyviGG~~~~~~~l~~vevYD~~t~----~W~~v~~~p~~~~~~-~~~v~~~g~lYViGG~-~~v~~YD~~~ 442 (464)
.++..++.|+.++ .+.+||.... .|..+..+....... ..+...++.+.+.|+. ..|..|+...
T Consensus 670 ~~~~~lvs~s~D~------~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 670 VDSSTLVSSSTDN------TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred eCCCEEEEEECCC------EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 3455666666543 5778887643 243333322211111 1122334555556543 4677777643
No 105
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=52.21 E-value=6 Score=39.07 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHhhCC-----cchhhhhhccccccccccCCchHHHH
Q 046692 140 HIFLPDDILEMCLVRLP-----LTSLMNARLVCKKWRYLTTTPRFLQM 182 (464)
Q Consensus 140 ~~~lp~dl~~~iL~rLp-----~~sl~~~~~vck~W~~l~~~~~f~~~ 182 (464)
+..||+|++..||.++- ..+|-++.++|+.|....-.|.+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 46899999999987664 47899999999999999988887654
No 106
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=51.33 E-value=2.5e+02 Score=27.63 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=39.5
Q ss_pred CceEEEeCCCCcEEEeccCCCCCCcceEEeEEC--CEEEEE-eCCCceEEEeCCCCcEEEccc
Q 046692 391 DSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCN--GIFYVY-SETDKLAGYDIERGFWIGIQT 450 (464)
Q Consensus 391 ~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~--g~lYVi-GG~~~v~~YD~~~~~W~~l~~ 450 (464)
..+..|||.+.+|.+- ++|......-+. .++ |.++.- -+.+.|.+||+++.++++++.
T Consensus 254 g~l~rfdPs~~sW~ey-pLPgs~arpys~-rVD~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 254 GSLHRFDPSVTSWIEY-PLPGSKARPYSM-RVDRHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ceeeEeCcccccceee-eCCCCCCCccee-eeccCCcEEeeccccCceeecCcccceEEEecC
Confidence 4678999999999987 566532222222 333 344442 256789999999999988765
No 107
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=50.59 E-value=2.5e+02 Score=27.34 Aligned_cols=56 Identities=5% Similarity=-0.070 Sum_probs=28.4
Q ss_pred ceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecC-CCCCCccccEEEEec
Q 046692 231 MFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVA-SMRYARSMPILGISE 296 (464)
Q Consensus 231 ~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~-~m~~~R~~~~~~~~~ 296 (464)
..++-..++.||+.--. .. ....-+.+.+.+-.-..|..+. |-+.-.+....+.++
T Consensus 193 EPCvkyY~g~LyLtTRg--------t~--~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvg 249 (367)
T PF12217_consen 193 EPCVKYYDGVLYLTTRG--------TL--PTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVG 249 (367)
T ss_dssp EEEEEEETTEEEEEEEE--------S---TTS---EEEEESSTTSS-EEEE-TT---SS---EEEET
T ss_pred cchhhhhCCEEEEEEcC--------cC--CCCCcceeeeecccCCchhhccccccccccCCCceeeC
Confidence 34555779999998431 11 1134567888888888998764 223334444455554
No 108
>PRK00178 tolB translocation protein TolB; Provisional
Probab=50.20 E-value=3e+02 Score=28.24 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=33.9
Q ss_pred cceEEeeCCCCceeeccccccCCCcceEEEEEC-CEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecC
Q 046692 206 GEIHALDVSQDQWHRIDASILKGRFMFSVVSIM-DDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVA 281 (464)
Q Consensus 206 ~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~-~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~ 281 (464)
..++.+|+.+++-..+.. ... .......+.+ .+|++.... ++ ..+++++|..++..+.+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~-~~g-~~~~~~~SpDG~~la~~~~~---------~g-----~~~Iy~~d~~~~~~~~lt 283 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN-FEG-LNGAPAWSPDGSKLAFVLSK---------DG-----NPEIYVMDLASRQLSRVT 283 (430)
T ss_pred CEEEEEECCCCCEEEccC-CCC-CcCCeEECCCCCEEEEEEcc---------CC-----CceEEEEECCCCCeEEcc
Confidence 468889998888777754 211 1111122223 445443321 11 246899999988877664
No 109
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=49.77 E-value=1.6e+02 Score=30.77 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=39.9
Q ss_pred ccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEe-EECCEEEEEeCCCceEEEeCCCC
Q 046692 372 SKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGV-VCNGIFYVYSETDKLAGYDIERG 443 (464)
Q Consensus 372 ~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v-~~~g~lYViGG~~~v~~YD~~~~ 443 (464)
...+.++++-|..+ .|......|+.| +..+...-....... .-+.+|+++||+..|+.+|+.++
T Consensus 312 Shd~~fia~~G~~G------~I~lLhakT~el--i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNG------HIHLLHAKTKEL--ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred cCCCCeEEEcccCc------eEEeehhhhhhh--hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc
Confidence 34556778777755 356666777777 334433222222121 23456888899999999999876
No 110
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=49.20 E-value=74 Score=34.24 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=46.4
Q ss_pred cccccCcEEEEEcCCCCCCCccCceEEEeCCCC--cEEEeccCCCCCC-------cceEEeEECCEEEEEeCCCceEEEe
Q 046692 369 TKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPVDFG-------VVSSGVVCNGIFYVYSETDKLAGYD 439 (464)
Q Consensus 369 ~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~--~W~~v~~~p~~~~-------~~~~~v~~~g~lYViGG~~~v~~YD 439 (464)
+.++.++.||+.... ..+.++|..+. .|+.-...+.... .....++.++++|+......+.++|
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEE
Confidence 345678899996542 35788998875 5876543322110 0111346789999876667899999
Q ss_pred CCCC--cEEE
Q 046692 440 IERG--FWIG 447 (464)
Q Consensus 440 ~~~~--~W~~ 447 (464)
.+++ .|+.
T Consensus 137 a~TGk~~W~~ 146 (527)
T TIGR03075 137 AKTGKVVWSK 146 (527)
T ss_pred CCCCCEEeec
Confidence 9876 4764
No 111
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=49.17 E-value=2.8e+02 Score=27.53 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=73.3
Q ss_pred ceEEeeCCCCceeeccccccCCCcceEEEEE-CCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCCCCC
Q 046692 207 EIHALDVSQDQWHRIDASILKGRFMFSVVSI-MDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVASMRY 285 (464)
Q Consensus 207 ~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~-~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~m~~ 285 (464)
.++.=.-.-.+|+.+.. ... -....+... ++.+.+++.. + +-+.-.||-...|..... +.
T Consensus 125 ~iy~T~DgG~tW~~~~~-~~~-gs~~~~~r~~dG~~vavs~~----------G------~~~~s~~~G~~~w~~~~r-~~ 185 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVVS-ETS-GSINDITRSSDGRYVAVSSR----------G------NFYSSWDPGQTTWQPHNR-NS 185 (302)
T ss_dssp -EEEESSTTSSEEEEE--S-----EEEEEE-TTS-EEEEETT----------S------SEEEEE-TT-SS-EEEE---S
T ss_pred cEEEeCCCCCCeeEccc-CCc-ceeEeEEECCCCcEEEEECc----------c------cEEEEecCCCccceEEcc-Cc
Confidence 45554445568988765 222 222233333 5555445441 1 123457888889987653 34
Q ss_pred CccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeee--cCCCcccccCCCC-CCccceecc
Q 046692 286 ARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYR--NSFDGFEGSLLPN-RKSYKFIRQ 362 (464)
Q Consensus 286 ~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Yd--p~~n~W~~~~l~~-~~~~~~~~~ 362 (464)
.|.-.+++...+. . |+++. ..+. +..=+ ...++|..+..|. ..++.++
T Consensus 186 ~~riq~~gf~~~~---------------~--lw~~~-~Gg~---------~~~s~~~~~~~~w~~~~~~~~~~~~~~l-- 236 (302)
T PF14870_consen 186 SRRIQSMGFSPDG---------------N--LWMLA-RGGQ---------IQFSDDPDDGETWSEPIIPIKTNGYGIL-- 236 (302)
T ss_dssp SS-EEEEEE-TTS------------------EEEEE-TTTE---------EEEEE-TTEEEEE---B-TTSS--S-EE--
T ss_pred cceehhceecCCC---------------C--EEEEe-CCcE---------EEEccCCCCccccccccCCcccCceeeE--
Confidence 5555566655432 2 44443 1110 01111 2345677733333 3344432
Q ss_pred cccccccccc-cCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccC-CCCCCcceEEeEECCEEEEEeCCCceEEE
Q 046692 363 KSDQSITKAS-KRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRL-PVDFGVVSSGVVCNGIFYVYSETDKLAGY 438 (464)
Q Consensus 363 ~~~~~~~~~~-~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~-p~~~~~~~~~v~~~g~lYViGG~~~v~~Y 438 (464)
.++. -++.+++.||.+. +.+=.-.-++|++.... +.+-........-.++-||+|....+++|
T Consensus 237 ------d~a~~~~~~~wa~gg~G~-------l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 237 ------DLAYRPPNEIWAVGGSGT-------LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ------EEEESSSS-EEEEESTT--------EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ------EEEecCCCCEEEEeCCcc-------EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 1222 3478999998643 34444455789998532 22222333333456799999987788887
No 112
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=46.89 E-value=3.6e+02 Score=28.68 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=35.1
Q ss_pred ccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCC-CceEEEeCCC
Q 046692 370 KASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET-DKLAGYDIER 442 (464)
Q Consensus 370 ~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~-~~v~~YD~~~ 442 (464)
..-.+..|+|.=|++. .+.+||.....=+.- +....-....+..-+|.+.++|.. ..|..||+..
T Consensus 216 fspsne~l~vsVG~Dk------ki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDK------KINIYDIRSQASTDR--LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ecCCccceEEEecccc------eEEEeecccccccce--eeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 3445678888878754 788999985532221 111111222122235555566543 3677888753
No 113
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=46.31 E-value=2.2e+02 Score=25.62 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=27.2
Q ss_pred ceEEEeCCCCcEEEeccCCCCCCcceEEeEE-CCEEEEEeC-CCceEEEeCCCC
Q 046692 392 SGEIYDSVSNKWMEIQRLPVDFGVVSSGVVC-NGIFYVYSE-TDKLAGYDIERG 443 (464)
Q Consensus 392 ~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~-~g~lYViGG-~~~v~~YD~~~~ 443 (464)
.+.+||..+... +..+............. ++.+++.++ ...+..||..+.
T Consensus 200 ~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 200 TIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred cEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 678999876433 33331111112222222 356666665 568899998753
No 114
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=45.86 E-value=3e+02 Score=27.00 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=46.5
Q ss_pred cccCcEEEEEcCCCCCCCccCceEEEeCCCCc-EEEeccCCCCCCcceEEeEECCEEEEEeCCCc--eEEEeCCCCcEEE
Q 046692 371 ASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNK-WMEIQRLPVDFGVVSSGVVCNGIFYVYSETDK--LAGYDIERGFWIG 447 (464)
Q Consensus 371 ~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~-W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~~--v~~YD~~~~~W~~ 447 (464)
+.++++|.+.-| +.+.+|+...+. +...+.+..+.. .....++++.|+|-.-... +..|+.+..+-..
T Consensus 95 ~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~-i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~ 165 (321)
T PF03178_consen 95 CSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFY-ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLIL 165 (321)
T ss_dssp EEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSS-EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEE
T ss_pred hhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEE-EEEEeccccEEEEEEcccCEEEEEEEccCCEEEE
Confidence 344566555555 267888888888 888877766543 3344577887776554454 4567876666666
Q ss_pred cccCCCCc
Q 046692 448 IQTSPFPP 455 (464)
Q Consensus 448 l~~lp~pr 455 (464)
++.-+.|+
T Consensus 166 va~d~~~~ 173 (321)
T PF03178_consen 166 VARDYQPR 173 (321)
T ss_dssp EEEESS-B
T ss_pred EEecCCCc
Confidence 66544443
No 115
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=45.54 E-value=2.4e+02 Score=25.68 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCCCCccCceEEEeCCCCcEEE-----e----ccCCCCCCcceEEeEEC-CEEEEEeCCCceEEEeCCCC
Q 046692 374 RFVLIAVGGLGSWDEPLDSGEIYDSVSNKWME-----I----QRLPVDFGVVSSGVVCN-GIFYVYSETDKLAGYDIERG 443 (464)
Q Consensus 374 ~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~-----v----~~~p~~~~~~~~~v~~~-g~lYViGG~~~v~~YD~~~~ 443 (464)
++++|++.|. ..+.||...++... + ..+|. .. .++...+ +++|++-|. ..++||..+.
T Consensus 110 ~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~--~i-daa~~~~~~~~yfF~g~-~y~~~d~~~~ 177 (194)
T cd00094 110 NGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDFPGVPD--KV-DAAFRWLDGYYYFFKGD-QYWRFDPRSK 177 (194)
T ss_pred CCEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcCCCcCC--Cc-ceeEEeCCCcEEEEECC-EEEEEeCccc
Confidence 6899999884 44677765554311 1 11221 22 2333344 899999764 7899999876
Q ss_pred c
Q 046692 444 F 444 (464)
Q Consensus 444 ~ 444 (464)
+
T Consensus 178 ~ 178 (194)
T cd00094 178 E 178 (194)
T ss_pred e
Confidence 6
No 116
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=43.82 E-value=3.1e+02 Score=27.70 Aligned_cols=119 Identities=12% Similarity=0.019 Sum_probs=58.9
Q ss_pred ceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCC
Q 046692 265 KGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFD 344 (464)
Q Consensus 265 ~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n 344 (464)
..++++|..+++- +.-++.+-.. .++... ++|+ +|+..=+-..-.-..+.+.++.||+.+-
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~-~~~~sp---------------dgk~-~y~a~T~~sR~~rG~RtDvv~~~D~~TL 77 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLG-NVALSP---------------DGKT-IYVAETFYSRGTRGERTDVVEIWDTQTL 77 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSE-EEEE-T---------------TSSE-EEEEEEEEEETTEEEEEEEEEEEETTTT
T ss_pred ceEEEEECCCCcE--EEEeecccCC-ceeECC---------------CCCE-EEEEEEEEeccccccceeEEEEEecCcC
Confidence 5799999888763 2222222222 222221 2443 6765421100001367889999999988
Q ss_pred cccc-cCCCCC-CccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCC
Q 046692 345 GFEG-SLLPNR-KSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLP 410 (464)
Q Consensus 345 ~W~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p 410 (464)
.-+. ..+|.. +....+ .+ ...+...-+..+||.-= .+-.+|-+-|...++-...-+.|
T Consensus 78 ~~~~EI~iP~k~R~~~~~-~~--~~~~ls~dgk~~~V~N~-----TPa~SVtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 78 SPTGEIEIPPKPRAQVVP-YK--NMFALSADGKFLYVQNF-----TPATSVTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp EEEEEEEETTS-B--BS---G--GGEEE-TTSSEEEEEEE-----SSSEEEEEEETTTTEEEEEEEGT
T ss_pred cccceEecCCcchheecc-cc--cceEEccCCcEEEEEcc-----CCCCeEEEEECCCCceeeeecCC
Confidence 6444 344432 221110 00 11122233445565432 34568899999988764433333
No 117
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=39.45 E-value=4.9e+02 Score=27.54 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=39.0
Q ss_pred CCCCeEEEeccccCCccccceEEeeCCCCc--eeeccccc---cCC-CcceEEEEEC-CEEEEEcCCcCCccCccccCCC
Q 046692 188 HQNPWLFLFGAVKDGYCSGEIHALDVSQDQ--WHRIDASI---LKG-RFMFSVVSIM-DDVYVVGGCSSLTSFGRVDRSS 260 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~--W~~l~~~~---~~~-R~~~s~~~~~-~~IYVvGG~~gl~~~~~~~~~~ 260 (464)
..++.+|+... ...++++|..+.+ |+.-.... ..+ -....++..+ +.||+...
T Consensus 59 v~~g~vy~~~~------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------------- 118 (488)
T cd00216 59 VVDGDMYFTTS------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------------- 118 (488)
T ss_pred EECCEEEEeCC------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--------------
Confidence 44666776543 1468999998755 87532211 000 0112234446 78887543
Q ss_pred ccccceEEEEeCCCCC--eeec
Q 046692 261 FKTHKGVLVFSPLTKS--WRKV 280 (464)
Q Consensus 261 ~~~~~~v~vydp~t~~--W~~l 280 (464)
...++.+|+.|++ |+.-
T Consensus 119 ---~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 119 ---DGRLVALDAETGKQVWKFG 137 (488)
T ss_pred ---CCeEEEEECCCCCEeeeec
Confidence 1247888888765 7653
No 118
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=38.04 E-value=67 Score=19.55 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=18.5
Q ss_pred EECCEEEEEeCCCceEEEeCCCCc
Q 046692 421 VCNGIFYVYSETDKLAGYDIERGF 444 (464)
Q Consensus 421 ~~~g~lYViGG~~~v~~YD~~~~~ 444 (464)
..++.+|+......+.++|.++++
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCc
Confidence 456788887767789999987763
No 119
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=37.77 E-value=3e+02 Score=24.70 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=25.7
Q ss_pred ceEEEeCCCCcEEEeccCCCCCCcceEEeE-ECC-EEEEEeCCCceEEEeCCCCc
Q 046692 392 SGEIYDSVSNKWMEIQRLPVDFGVVSSGVV-CNG-IFYVYSETDKLAGYDIERGF 444 (464)
Q Consensus 392 ~vevYD~~t~~W~~v~~~p~~~~~~~~~v~-~~g-~lYViGG~~~v~~YD~~~~~ 444 (464)
.+.+||..+.+ .+..+............ -++ .+++.+....+..||+.+.+
T Consensus 158 ~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 158 TIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred cEEEEEccccc--cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 67889987443 22222221111112222 244 45555445688999987644
No 120
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=37.12 E-value=2.3e+02 Score=29.11 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=44.2
Q ss_pred ccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCC-----CCC-CcceEEeEECCEEEEEeCC---------
Q 046692 368 ITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLP-----VDF-GVVSSGVVCNGIFYVYSET--------- 432 (464)
Q Consensus 368 ~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p-----~~~-~~~~~~v~~~g~lYViGG~--------- 432 (464)
...+.++|++|++.- ...++++|.+-. =+++++.. ... +.....|...|.||++...
T Consensus 203 ~DIi~~kGkfYAvD~-------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~ 274 (373)
T PLN03215 203 SDIIVHKGQTYALDS-------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRK 274 (373)
T ss_pred eEEEEECCEEEEEcC-------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccc
Confidence 345789999999943 235566664321 12222111 011 1112245677889887531
Q ss_pred ---------C--ceEEEeCCCCcEEEcccCC
Q 046692 433 ---------D--KLAGYDIERGFWIGIQTSP 452 (464)
Q Consensus 433 ---------~--~v~~YD~~~~~W~~l~~lp 452 (464)
. .|+..|.+..+|.++.+|.
T Consensus 275 ~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 275 ADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred cccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 1 3455588899999999876
No 121
>smart00284 OLF Olfactomedin-like domains.
Probab=36.65 E-value=2e+02 Score=27.84 Aligned_cols=76 Identities=17% Similarity=0.046 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCCCCccCceEEEeC----CCCcEEEeccCCCCCCcceEEeEECCEEEEEe-CCCceEEEeCCCCcEEEcc
Q 046692 375 FVLIAVGGLGSWDEPLDSGEIYDS----VSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYS-ETDKLAGYDIERGFWIGIQ 449 (464)
Q Consensus 375 ~~iyviGG~~~~~~~l~~vevYD~----~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViG-G~~~v~~YD~~~~~W~~l~ 449 (464)
+++|+..+.+.. .+.+..|.. ....+...-.+|.+....+ .++.||.||.-- ++..|..||+.++.=....
T Consensus 35 ~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG-~VVYngslYY~~~~s~~iiKydL~t~~v~~~~ 110 (255)
T smart00284 35 SLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPHAGQGTG-VVVYNGSLYFNKFNSHDICRFDLTTETYQKEP 110 (255)
T ss_pred ceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCCcccccc-EEEECceEEEEecCCccEEEEECCCCcEEEEE
Confidence 589998775311 234555544 2344544445666444333 368999999854 5679999999998765555
Q ss_pred cCCCC
Q 046692 450 TSPFP 454 (464)
Q Consensus 450 ~lp~p 454 (464)
.+|..
T Consensus 111 ~Lp~a 115 (255)
T smart00284 111 LLNGA 115 (255)
T ss_pred ecCcc
Confidence 55543
No 122
>PTZ00420 coronin; Provisional
Probab=36.04 E-value=6.1e+02 Score=27.65 Aligned_cols=74 Identities=9% Similarity=0.062 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCCCCccCceEEEeCCC-CcEEEeccCCCCCCcc-eEEeEECCEEEEEe-CCCceEEEeCCCCcEEEcc
Q 046692 374 RFVLIAVGGLGSWDEPLDSGEIYDSVS-NKWMEIQRLPVDFGVV-SSGVVCNGIFYVYS-ETDKLAGYDIERGFWIGIQ 449 (464)
Q Consensus 374 ~~~iyviGG~~~~~~~l~~vevYD~~t-~~W~~v~~~p~~~~~~-~~~v~~~g~lYViG-G~~~v~~YD~~~~~W~~l~ 449 (464)
++..++.+|.+.. ....+.+||..+ ..-.....+....+.. ...-.-.|.+|+.| |-..|..|+...+.-..+.
T Consensus 225 d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 225 DDNYILSTGFSKN--NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred CCCEEEEEEcCCC--CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 3445555555431 123688999874 2211111111111100 00011247889888 5668889998776544433
No 123
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=35.96 E-value=73 Score=31.21 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=39.7
Q ss_pred cceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecC
Q 046692 206 GEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVA 281 (464)
Q Consensus 206 ~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~ 281 (464)
..+++|||++.+|..-+-+-..+|-....+--.+.++..- -..+.+.+|||.|-+.+.+|
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~se----------------a~agai~rfdpeta~ftv~p 313 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSE----------------ADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred ceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeec----------------cccCceeecCcccceEEEec
Confidence 4689999999999887653345554333333344554421 12456899999999988775
No 124
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=35.83 E-value=4.9e+02 Score=26.51 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCcEEEecc
Q 046692 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQR 408 (464)
Q Consensus 376 ~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~ 408 (464)
.|.++|+.++ .+-+||..+-+-+.+-.
T Consensus 299 pL~A~G~vdG------~i~iyD~a~~~~R~~c~ 325 (399)
T KOG0296|consen 299 PLAACGSVDG------TIAIYDLAASTLRHICE 325 (399)
T ss_pred chhhcccccc------eEEEEecccchhheecc
Confidence 6888888765 67889998766555543
No 125
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=35.51 E-value=1.3e+02 Score=31.84 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=46.1
Q ss_pred cccccCcEEEEEcCCCCCCCccCceEEEeCCCC--cEEEeccCCC----CCCcceEEeEEC-CEEEEEeCCCceEEEeCC
Q 046692 369 TKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPV----DFGVVSSGVVCN-GIFYVYSETDKLAGYDIE 441 (464)
Q Consensus 369 ~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~--~W~~v~~~p~----~~~~~~~~v~~~-g~lYViGG~~~v~~YD~~ 441 (464)
+.++.+++||+.... ..+.++|..+. .|+.-...+. +.......++.+ +++|+......|.++|.+
T Consensus 56 sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~ 128 (488)
T cd00216 56 TPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAE 128 (488)
T ss_pred CCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECC
Confidence 346778899986542 36788998765 5887433221 001111123456 899987666789999987
Q ss_pred CC--cEEEc
Q 046692 442 RG--FWIGI 448 (464)
Q Consensus 442 ~~--~W~~l 448 (464)
++ .|+.-
T Consensus 129 TG~~~W~~~ 137 (488)
T cd00216 129 TGKQVWKFG 137 (488)
T ss_pred CCCEeeeec
Confidence 65 57753
No 126
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=35.42 E-value=3.4e+02 Score=24.60 Aligned_cols=23 Identities=13% Similarity=-0.164 Sum_probs=17.4
Q ss_pred ccCcEEEEEcCCCCCCCccCceEEEeCCCCc
Q 046692 372 SKRFVLIAVGGLGSWDEPLDSGEIYDSVSNK 402 (464)
Q Consensus 372 ~~~~~iyviGG~~~~~~~l~~vevYD~~t~~ 402 (464)
..++++|.+-|. ..+.||..+++
T Consensus 156 ~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 156 WLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred eCCCcEEEEECC--------EEEEEeCccce
Confidence 344789998874 66889988775
No 127
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=35.14 E-value=2.4e+02 Score=26.33 Aligned_cols=68 Identities=19% Similarity=0.015 Sum_probs=46.5
Q ss_pred CcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeE-ECCEEEEEeCCCceEEEeCCCCcEEEcccCC
Q 046692 374 RFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVV-CNGIFYVYSETDKLAGYDIERGFWIGIQTSP 452 (464)
Q Consensus 374 ~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~-~~g~lYViGG~~~v~~YD~~~~~W~~l~~lp 452 (464)
++.||++.-. ...++.+|+.++.-+.+ ..+.+ .+.++. -++.||+... ..+..+|+.+++++.+...+
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~-~~~~~---~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTGEVEVI-DLPGP---NGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEE-ESSSE---EEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcC------CCEEEEEECCCCeEEEE-ecCCC---ceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeecc
Confidence 5788988643 34789999998876554 33332 222222 3788888865 56677799999999888763
No 128
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=35.12 E-value=4.7e+02 Score=26.07 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=40.7
Q ss_pred CcEEEEEcCCCCCCCccCceEEEeCC--CCcEEEec---cCCCCCCc--ceEE-eEE--CCEEEEEe-CCCceEEEeC--
Q 046692 374 RFVLIAVGGLGSWDEPLDSGEIYDSV--SNKWMEIQ---RLPVDFGV--VSSG-VVC--NGIFYVYS-ETDKLAGYDI-- 440 (464)
Q Consensus 374 ~~~iyviGG~~~~~~~l~~vevYD~~--t~~W~~v~---~~p~~~~~--~~~~-v~~--~g~lYViG-G~~~v~~YD~-- 440 (464)
+..+|++..... .|.+|+.. +..++.+. .+|..... ..+. +.. +..|||.- |.+.|..|++
T Consensus 203 g~~~Yv~~e~s~------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 203 GKYAYVVNELSN------TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp SSEEEEEETTTT------EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred cCEEEEecCCCC------cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 358999886533 45555444 66776664 34332211 2222 223 44688864 6788999987
Q ss_pred CCCcEEEcccCC
Q 046692 441 ERGFWIGIQTSP 452 (464)
Q Consensus 441 ~~~~W~~l~~lp 452 (464)
.++.-+.+...+
T Consensus 277 ~~g~l~~~~~~~ 288 (345)
T PF10282_consen 277 ATGTLTLVQTVP 288 (345)
T ss_dssp TTTTEEEEEEEE
T ss_pred CCCceEEEEEEe
Confidence 445555554433
No 129
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=33.92 E-value=1.1e+02 Score=29.43 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCCCCccCceEEEeC-----CCCcEEEeccCCCCCCcceEEeEECCEEEEE-eCCCceEEEeCCCCcEEE
Q 046692 374 RFVLIAVGGLGSWDEPLDSGEIYDS-----VSNKWMEIQRLPVDFGVVSSGVVCNGIFYVY-SETDKLAGYDIERGFWIG 447 (464)
Q Consensus 374 ~~~iyviGG~~~~~~~l~~vevYD~-----~t~~W~~v~~~p~~~~~~~~~v~~~g~lYVi-GG~~~v~~YD~~~~~W~~ 447 (464)
.++||++.+..+. .++.|.. ..+.+...-.||.+....+ .++.||.||.- .+++.|.+||+.++.=..
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG-~vVYngslYY~~~~s~~IvkydL~t~~v~~ 103 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTG-HVVYNGSLYYNKYNSRNIVKYDLTTRSVVA 103 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEeceeccCC-eEEECCcEEEEecCCceEEEEECcCCcEEE
Confidence 3589999987553 4444433 2334444445665444433 35889998864 467899999999986443
Q ss_pred cccCC
Q 046692 448 IQTSP 452 (464)
Q Consensus 448 l~~lp 452 (464)
-..||
T Consensus 104 ~~~L~ 108 (250)
T PF02191_consen 104 RRELP 108 (250)
T ss_pred EEECC
Confidence 33344
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.78 E-value=2.5e+02 Score=27.11 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=35.3
Q ss_pred EEEeCCCCcEEEe--ccCCCCCCcceEEeEECCEEEEEeCCCceEEEeCCCC-cEEEccc
Q 046692 394 EIYDSVSNKWMEI--QRLPVDFGVVSSGVVCNGIFYVYSETDKLAGYDIERG-FWIGIQT 450 (464)
Q Consensus 394 evYD~~t~~W~~v--~~~p~~~~~~~~~v~~~g~lYViGG~~~v~~YD~~~~-~W~~l~~ 450 (464)
+.-+-+...|+.- .++|...... +=...++.|-|-||.|.|..+-...+ +|..+..
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~v-SWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWRV-SWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred EEecCccCcccccccccCCcceEEE-EEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 3344455678653 4455432222 22245777778889999988877655 9998865
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=33.34 E-value=5.9e+02 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.0
Q ss_pred eEEeEECCEEEEEeCCC-ceEEEeCCCC
Q 046692 417 SSGVVCNGIFYVYSETD-KLAGYDIERG 443 (464)
Q Consensus 417 ~~~v~~~g~lYViGG~~-~v~~YD~~~~ 443 (464)
+.++..+|.+.+.|+.+ .|..+|+.+.
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchH
Confidence 33456799999999754 6677777654
No 132
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.58 E-value=2e+02 Score=28.50 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=26.8
Q ss_pred ccccceEEeeCCCCce--eecccc------ccCCCcceEEEEECCEEEEE
Q 046692 203 YCSGEIHALDVSQDQW--HRIDAS------ILKGRFMFSVVSIMDDVYVV 244 (464)
Q Consensus 203 ~~~~~v~~yD~~t~~W--~~l~~~------~~~~R~~~s~~~~~~~IYVv 244 (464)
.....+++||..+++| ...+.. +...|..-.+++..+++|++
T Consensus 170 ~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 170 KGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred cCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 3456899999999999 433321 11123344567777888776
No 133
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.53 E-value=4.4e+02 Score=27.04 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCeEEEeccccCCccccceEEeeCCCCc--eeeccccccCCCcceEEEEECCEEEEEc--CCcCCccCccccCCCccc
Q 046692 188 HQNPWLFLFGAVKDGYCSGEIHALDVSQDQ--WHRIDASILKGRFMFSVVSIMDDVYVVG--GCSSLTSFGRVDRSSFKT 263 (464)
Q Consensus 188 ~~~~~l~v~GG~~~~~~~~~v~~yD~~t~~--W~~l~~~~~~~R~~~s~~~~~~~IYVvG--G~~gl~~~~~~~~~~~~~ 263 (464)
...+.|+.+||..+ .+.+-+||..+.+ |+.-.. ++.......-+-.-+--|+=| - +.-.....
T Consensus 158 ~~~p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNv-pnD~L~LrVPvW~tdi~Fl~g~~~---------~~fat~T~ 224 (412)
T KOG3881|consen 158 DTDPYIVATGGKEN---INELKIWDLEQSKQIWSAKNV-PNDRLGLRVPVWITDIRFLEGSPN---------YKFATITR 224 (412)
T ss_pred CCCCceEecCchhc---ccceeeeecccceeeeeccCC-CCccccceeeeeeccceecCCCCC---------ceEEEEec
Q ss_pred cceEEEEeCCCCCeeecCCCCCCccccEEEEecCCCccccccccCCCC------CCccceEEecCcCCCCCCccccccce
Q 046692 264 HKGVLVFSPLTKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQ------DRRFPRSRLGGVSDVYEDPHRLSLRR 337 (464)
Q Consensus 264 ~~~v~vydp~t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~------~gk~~iyviGG~~~~~~~~~~l~~ve 337 (464)
...+-.|||.+++ +++......-...+......+++|.++++.-... .+|....-++|..|
T Consensus 225 ~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG------------ 291 (412)
T KOG3881|consen 225 YHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG------------ 291 (412)
T ss_pred ceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC------------
Q ss_pred eeecCCCcccccCCCCCCccceecccccccccccccCcE--EEEEcCCCCCCCccCceEEEeCCCCc
Q 046692 338 QYRNSFDGFEGSLLPNRKSYKFIRQKSDQSITKASKRFV--LIAVGGLGSWDEPLDSGEIYDSVSNK 402 (464)
Q Consensus 338 ~Ydp~~n~W~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--iyviGG~~~~~~~l~~vevYD~~t~~ 402 (464)
+......... +.+.+|.+. -+-+||.++++
T Consensus 292 -----------------------------sirsih~hp~~~~las~GLDR------yvRIhD~ktrk 323 (412)
T KOG3881|consen 292 -----------------------------SIRSIHCHPTHPVLASCGLDR------YVRIHDIKTRK 323 (412)
T ss_pred -----------------------------CcceEEEcCCCceEEeeccce------eEEEeecccch
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=31.47 E-value=5.3e+02 Score=25.61 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=31.0
Q ss_pred ceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCCeeecCC
Q 046692 207 EIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKSWRKVAS 282 (464)
Q Consensus 207 ~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~W~~l~~ 282 (464)
.+..||..+++-... ....-.-..++..+..=.++|| .+ ..+-+||..+..=..+..
T Consensus 36 slrlYdv~~~~l~~~---~~~~~plL~c~F~d~~~~~~G~---------~d-------g~vr~~Dln~~~~~~igt 92 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK---FKHGAPLLDCAFADESTIVTGG---------LD-------GQVRRYDLNTGNEDQIGT 92 (323)
T ss_pred cEEEEeccchhhhhh---eecCCceeeeeccCCceEEEec---------cC-------ceEEEEEecCCcceeecc
Confidence 467788877632111 1111111234444555556677 22 358899999987665543
No 135
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=1.8e+02 Score=27.41 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=43.0
Q ss_pred ccccccCcEEEEEcCCCCCCCccCceEEEeCCCCc--EEEeccCCCCCCcceEEeEECCEEEEEeCCC-ceEEEeCC
Q 046692 368 ITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNK--WMEIQRLPVDFGVVSSGVVCNGIFYVYSETD-KLAGYDIE 441 (464)
Q Consensus 368 ~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~--W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~-~v~~YD~~ 441 (464)
.+....++.||..-|..+ .+.+.++|..+.+ |++ +++.+..+....+.+++.+|...-.. .-..||+.
T Consensus 49 QGL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~--~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~ 119 (262)
T COG3823 49 QGLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSE--KLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD 119 (262)
T ss_pred cceeeeCCEEEEeccccc----cceeEEEeccCceEEEEe--ecCCccccccceeeccceEEEEEeccceeEEEChH
Confidence 345567788888888755 4578999998664 444 34433333334568899999886432 23445543
No 136
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=29.25 E-value=5.4e+02 Score=26.87 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=36.0
Q ss_pred ceEEEeCCCCcEEEeccCCCCCCcceEEeEE--CCEEEEEeCCC-ceEEEeCCCCcEEEcccCC
Q 046692 392 SGEIYDSVSNKWMEIQRLPVDFGVVSSGVVC--NGIFYVYSETD-KLAGYDIERGFWIGIQTSP 452 (464)
Q Consensus 392 ~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~--~g~lYViGG~~-~v~~YD~~~~~W~~l~~lp 452 (464)
+|.++|..... .+..++.+-........+ -|...+++|.+ .|+.|+-.+..|+.+..++
T Consensus 412 ~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 412 SVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred eEEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh
Confidence 48889997664 333333332211111223 35666666654 7788888999999987765
No 137
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=28.19 E-value=6.5e+02 Score=25.57 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=34.7
Q ss_pred ccceEEeeCCCC-----ceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCCCCC
Q 046692 205 SGEIHALDVSQD-----QWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPLTKS 276 (464)
Q Consensus 205 ~~~v~~yD~~t~-----~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~t~~ 276 (464)
.+.++..|.... .|..+.. ...-..+.+...++.+|+.-..+ .....+..++..+..
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~--~~~~~~~~v~~~~~~~yi~Tn~~-------------a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSP--REDGVEYYVDHHGDRLYILTNDD-------------APNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEE--SSSS-EEEEEEETTEEEEEE-TT--------------TT-EEEEEETTSTS
T ss_pred CCeEEEEeccccCCCcCCcEEEeC--CCCceEEEEEccCCEEEEeeCCC-------------CCCcEEEEecccccc
Confidence 468899998875 7887754 22223334555688999886521 123457888877665
No 138
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.96 E-value=5.8e+02 Score=24.58 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred EEeccccCCccccceEEeeCCCCceeeccccccCCCcceEEEEECCEEEEEcCCcCCccCccccCCCccccceEEEEeCC
Q 046692 194 FLFGAVKDGYCSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDRSSFKTHKGVLVFSPL 273 (464)
Q Consensus 194 ~v~GG~~~~~~~~~v~~yD~~t~~W~~l~~~~~~~R~~~s~~~~~~~IYVvGG~~gl~~~~~~~~~~~~~~~~v~vydp~ 273 (464)
|.-|| .-..++.||..|++-.+--. ...+.-+...---+..|.+.|+ .-.++-+||-.
T Consensus 74 f~s~G-----gDk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~Sgs----------------fD~s~r~wDCR 131 (307)
T KOG0316|consen 74 FASCG-----GDKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGS----------------FDSSVRLWDCR 131 (307)
T ss_pred cccCC-----CCceEEEEEcccCeeeeecc-cccceeeEEEecCcceEEEecc----------------ccceeEEEEcc
Q ss_pred CCCeeecCCCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCCCCCccccccceeeecCCCcccccCCCC
Q 046692 274 TKSWRKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPN 353 (464)
Q Consensus 274 t~~W~~l~~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~~~~~~~l~~ve~Ydp~~n~W~~~~l~~ 353 (464)
+++-+++.-+..++.......+... ..+.|..+| .+..||....+-..--+..
T Consensus 132 S~s~ePiQildea~D~V~Si~v~~h------------------eIvaGS~DG---------tvRtydiR~G~l~sDy~g~ 184 (307)
T KOG0316|consen 132 SRSFEPIQILDEAKDGVSSIDVAEH------------------EIVAGSVDG---------TVRTYDIRKGTLSSDYFGH 184 (307)
T ss_pred cCCCCccchhhhhcCceeEEEeccc------------------EEEeeccCC---------cEEEEEeecceeehhhcCC
Q ss_pred CCccceecccccccccccccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEEeEECCEEEEEeCCC
Q 046692 354 RKSYKFIRQKSDQSITKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETD 433 (464)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~g~lYViGG~~ 433 (464)
+.. +.....++...++|-.++ ++...|-++.+--..-.=......---+...+..-+|++|..
T Consensus 185 pit-----------~vs~s~d~nc~La~~l~s------tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 185 PIT-----------SVSFSKDGNCSLASSLDS------TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred cce-----------eEEecCCCCEEEEeeccc------eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccC
Q ss_pred --ceEEEeCCCCcEEEcccCCCCccc----cccCCCC
Q 046692 434 --KLAGYDIERGFWIGIQTSPFPPRV----IEYYPKL 464 (464)
Q Consensus 434 --~v~~YD~~~~~W~~l~~lp~pr~~----~~~~~~l 464 (464)
.|+.||+.... .+..++.+... ..+||++
T Consensus 248 DG~Vy~wdLvd~~--~~sk~~~~~~v~v~dl~~hp~~ 282 (307)
T KOG0316|consen 248 DGKVYFWDLVDET--QISKLSVVSTVIVTDLSCHPTM 282 (307)
T ss_pred CceEEEEEeccce--eeeeeccCCceeEEeeecccCc
No 139
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=26.90 E-value=4e+02 Score=26.36 Aligned_cols=67 Identities=22% Similarity=0.183 Sum_probs=36.4
Q ss_pred ccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEe----ccCCCCCCcceEEeEECCEEEEEe-CCCceEEEeCCCCc
Q 046692 372 SKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEI----QRLPVDFGVVSSGVVCNGIFYVYS-ETDKLAGYDIERGF 444 (464)
Q Consensus 372 ~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v----~~~p~~~~~~~~~v~~~g~lYViG-G~~~v~~YD~~~~~ 444 (464)
.-.+.+++.||.+. ..-+|+..+..=+.. ..++...+...++-.+++.-.+.| |-.+..-+|+++++
T Consensus 106 sPSg~~VAcGGLdN------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 106 SPSGNFVACGGLDN------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ 177 (343)
T ss_pred CCCCCeEEecCcCc------eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce
Confidence 44578999999864 567888875422211 123434444444445555444443 44455556666554
No 140
>PRK04922 tolB translocation protein TolB; Provisional
Probab=26.20 E-value=7.3e+02 Score=25.54 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=31.0
Q ss_pred ceEEEeCCCCcEEEeccCCCCCCcceEEeEEC-CEEEEEeC---CCceEEEeCCCCcEEEccc
Q 046692 392 SGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCN-GIFYVYSE---TDKLAGYDIERGFWIGIQT 450 (464)
Q Consensus 392 ~vevYD~~t~~W~~v~~~p~~~~~~~~~v~~~-g~lYViGG---~~~v~~YD~~~~~W~~l~~ 450 (464)
.++++|..+++++.+..-. .. .......-+ ..|++..+ ...|..+|+.++..+.+..
T Consensus 317 ~iy~~dl~~g~~~~lt~~g-~~-~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 317 QIYRVAASGGSAERLTFQG-NY-NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred eEEEEECCCCCeEEeecCC-CC-ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC
Confidence 5677777777776664211 11 111111223 44555432 2368889988888776654
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.63 E-value=9.3e+02 Score=26.56 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=44.7
Q ss_pred cceEEEEeCCCCCeeecC--CCCCCccccEEEEecCCCccccccccCCCCCCccceEEecCcCCC-CCCccccccceeee
Q 046692 264 HKGVLVFSPLTKSWRKVA--SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDV-YEDPHRLSLRRQYR 340 (464)
Q Consensus 264 ~~~v~vydp~t~~W~~l~--~m~~~R~~~~~~~~~~~~~~~~~~~~~~~~~gk~~iyviGG~~~~-~~~~~~l~~ve~Yd 340 (464)
...+++|||.. .|-.-+ +.+..|+--+++.++. +| ++-+|+...+ .+|.+.+.....+|
T Consensus 46 ~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~---------------~R--LFS~g~sg~i~EwDl~~lk~~~~~d 107 (691)
T KOG2048|consen 46 DGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEG---------------GR--LFSSGLSGSITEWDLHTLKQKYNID 107 (691)
T ss_pred CCcEEEEccCC-CceeeEEEecCCCCceeeEEEccC---------------Ce--EEeecCCceEEEEecccCceeEEec
Confidence 34689999988 464433 3356676666776642 33 7888876544 46777777777788
Q ss_pred cCCCc-ccc
Q 046692 341 NSFDG-FEG 348 (464)
Q Consensus 341 p~~n~-W~~ 348 (464)
+..+. |..
T Consensus 108 ~~gg~IWsi 116 (691)
T KOG2048|consen 108 SNGGAIWSI 116 (691)
T ss_pred CCCcceeEE
Confidence 77665 765
No 142
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=25.15 E-value=6.4e+02 Score=24.49 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=28.4
Q ss_pred CceEEEeCCCCcEEEeccCCCCCCcceEE-eEECCEEEEEeC-CCceEEEeCCC
Q 046692 391 DSGEIYDSVSNKWMEIQRLPVDFGVVSSG-VVCNGIFYVYSE-TDKLAGYDIER 442 (464)
Q Consensus 391 ~~vevYD~~t~~W~~v~~~p~~~~~~~~~-v~~~g~lYViGG-~~~v~~YD~~~ 442 (464)
..|.++|..++.-+.. .+|.+.....+. +..+|++.+... ....+++++-+
T Consensus 146 g~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 4789999999976554 466654433333 334555444332 12455555443
No 143
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=23.83 E-value=3.6e+02 Score=23.67 Aligned_cols=83 Identities=19% Similarity=0.063 Sum_probs=47.6
Q ss_pred cccCcEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCC---cceE-EeEECCEEEEEeC---C--CceEEEe--
Q 046692 371 ASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFG---VVSS-GVVCNGIFYVYSE---T--DKLAGYD-- 439 (464)
Q Consensus 371 ~~~~~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~---~~~~-~v~~~g~lYViGG---~--~~v~~YD-- 439 (464)
+.++|.+|-+........ ...+..||..+.+.....++|.... .... +++.++.|-++-. . -.|+.-+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 356788888876533211 1168899999999944445665333 1111 2334777777632 1 2444443
Q ss_pred -CCCCcEEEcccCCCC
Q 046692 440 -IERGFWIGIQTSPFP 454 (464)
Q Consensus 440 -~~~~~W~~l~~lp~p 454 (464)
.....|+++-..+.+
T Consensus 81 ~~~~~SWtK~~~i~~~ 96 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLP 96 (164)
T ss_pred ccCcceEEEEEEEecC
Confidence 337899987665533
No 144
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=23.26 E-value=8.8e+02 Score=25.41 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCc
Q 046692 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGV 415 (464)
Q Consensus 375 ~~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~ 415 (464)
|...+++|.+ -.|++|+-.+..|+++..++..-+.
T Consensus 444 Gt~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~~sg~ 478 (506)
T KOG0289|consen 444 GTYLGIAGSD------LQVYICKKKTKSWTEIKELADHSGL 478 (506)
T ss_pred CCeEEeecce------eEEEEEecccccceeeehhhhcccc
Confidence 4556666542 2678889999999999887764433
No 145
>PF10470 AKAP7_RIRII_bdg: PKA-RI-RII subunit binding domain of A-kinase anchor protein; InterPro: IPR019511 This entry represents the RI-RII subunit-binding domain found at the C-terminal of the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA, for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes, by binding to its regulatory subunits, RI and RII, hence being known as a dual-specific AKAP []. The 25 crucial amino acids of RII-binding domains in general form structurally conserved amphipathic helices with unrelated sequences; hydrophobic amino acid residues form the backbone of the interaction and hydrogen bond- and salt-bridge-forming amino acid residues increase the affinity of the interaction []. The nuclear localisation signal-containing domain is found at the N terminus.
Probab=23.02 E-value=68 Score=23.18 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=16.0
Q ss_pred hccccchhhHHHHH-----HHHHHHHhc
Q 046692 15 RDFESLSVSKRLVR-----SVSRKLRNK 37 (464)
Q Consensus 15 ~~~~~~~~~~~~~~-----~~~~~~~~~ 37 (464)
.|.|-+++|||||. .|-|-|+.-
T Consensus 5 DdaeL~~lSKrlVenAVlkAvQQy~eEt 32 (61)
T PF10470_consen 5 DDAELVRLSKRLVENAVLKAVQQYLEET 32 (61)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677899999984 455555543
No 146
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.33 E-value=7.4e+02 Score=24.18 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=30.4
Q ss_pred cCcEEEEEcCCCCCCCccCceEEEeCCC----CcEEEeccCCCCCCcceEEeEEC---CEEEEEe
Q 046692 373 KRFVLIAVGGLGSWDEPLDSGEIYDSVS----NKWMEIQRLPVDFGVVSSGVVCN---GIFYVYS 430 (464)
Q Consensus 373 ~~~~iyviGG~~~~~~~l~~vevYD~~t----~~W~~v~~~p~~~~~~~~~v~~~---g~lYViG 430 (464)
.+|.||..-- ..+.|.++|+.+ .....+..-+....+.....+.+ |.||+..
T Consensus 195 ~~G~ly~~~~------~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDV------EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEEC------CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecC------CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 3566666332 245889999987 56677765554344444444445 8999986
No 147
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=21.58 E-value=4.3e+02 Score=26.53 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=43.6
Q ss_pred cCceEEEeCCCCcEEEe-ccCCCCCCcceEEeEECCEEEEEe-CCCceEEEeCCCCcEEEcccCCCCccccc
Q 046692 390 LDSGEIYDSVSNKWMEI-QRLPVDFGVVSSGVVCNGIFYVYS-ETDKLAGYDIERGFWIGIQTSPFPPRVIE 459 (464)
Q Consensus 390 l~~vevYD~~t~~W~~v-~~~p~~~~~~~~~v~~~g~lYViG-G~~~v~~YD~~~~~W~~l~~lp~pr~~~~ 459 (464)
.+...+.|..+|+ .+ ..+..+.+ --.++|+||+.- |...+..+|+++++.+.+..+|-..+...
T Consensus 184 ~~gG~vidv~s~e--vl~~GLsmPhS----PRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~ 249 (335)
T TIGR03032 184 RDGGCVIDIPSGE--VVASGLSMPHS----PRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLA 249 (335)
T ss_pred cCCeEEEEeCCCC--EEEcCccCCcC----CcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccc
Confidence 4566778888884 33 33332221 125789999985 66789999999999999988875444333
No 148
>PF13866 zf-SAP30: SAP30 zinc-finger; PDB: 2KDP_A 2LD7_A.
Probab=21.14 E-value=80 Score=24.48 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=12.0
Q ss_pred hhhhccccchhhHHHHHHHHHH
Q 046692 12 SLRRDFESLSVSKRLVRSVSRK 33 (464)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~ 33 (464)
.+.|---..|.|||+.++|+|+
T Consensus 20 rC~rpAgnas~SKRiqktv~Qk 41 (78)
T PF13866_consen 20 RCGRPAGNASYSKRIQKTVAQK 41 (78)
T ss_dssp ---SB--S----HHHHHHHHHH
T ss_pred cccCcccChhHHHHHHHHHHHh
Confidence 6777777889999999999997
No 149
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=20.53 E-value=2.8e+02 Score=24.08 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=39.1
Q ss_pred EEEEEcCCCCCCCccCceEEEeCCCCcEEEeccCCCCCCcceEE--eEECCEEEEEeCCCceEEEeCCCC--cEEEc
Q 046692 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSG--VVCNGIFYVYSETDKLAGYDIERG--FWIGI 448 (464)
Q Consensus 376 ~iyviGG~~~~~~~l~~vevYD~~t~~W~~v~~~p~~~~~~~~~--v~~~g~lYViGG~~~v~~YD~~~~--~W~~l 448 (464)
-+.++|- ..++.+||...|+=---..+|........+ ......+.++||...|..||-+-+ .|...
T Consensus 65 D~LliGt-------~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 65 DCLLIGT-------QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CEEEEec-------cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 4556664 347899999998621122344321111111 112467899999999999997655 47653
Done!