BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046694
(118 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 90/105 (85%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFY + GRIDLA K+F ++P +D+ASW ++ILGYGMLGEL +AINLFEAM+EDGVEY
Sbjct: 453 LDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDS 512
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
VS+I VL+ACS GGLVE+GKK+F+ MQ +N+KPT+ HYACMV LL
Sbjct: 513 VSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACMVDLL 557
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G ++LA ++F ++ ++D S+ LI+GY ++ LF M G++ V
Sbjct: 354 DMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVV 412
Query: 67 SHIGVLTACSLGGLVEKGKK 86
S++GV++AC+ +++GK+
Sbjct: 413 SYMGVISACANLAALKQGKE 432
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++GR A+ +F+++ K+ SW ++ + A++L M+ DG
Sbjct: 252 IDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNS 311
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
V+ VL AC+ G + GK E+ AR ++ +
Sbjct: 312 VTFTNVLPACARIGFLRPGK----EIHARAIRTGSS 343
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 86/105 (81%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFYT+ GRI LA IFDR+ KD ASW T+ILGYGMLGELD AI+LFE MR+D VEY
Sbjct: 386 LDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDS 445
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
VS I VL+ACS GGL+EKG+K+FDE++AR ++PT+ HYACMV LL
Sbjct: 446 VSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVDLL 490
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y ++G + LA +FD ++D S+ LI+G+ + +++LF M+ G++ V
Sbjct: 287 DMYAKSGHLKLARNVFDT-SLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNV 345
Query: 67 SHIGVLTACSLGGLVEKGKK 86
S +G L+AC+ +++GK+
Sbjct: 346 SFMGALSACANLTAIKQGKE 365
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G A+ +F +L K+ SW +I + VA+ L M++ G
Sbjct: 185 IDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNS 244
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ VL AC+ GLV GK E+ AR++ H C L +
Sbjct: 245 VTFTNVLPACARMGLVRPGK----EIHARSI-----HMGCAFDLFVS 282
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLG-ELDVAINLFEAMREDGVE 62
L FY G + A ++FD +P KD SW T+I + + G A+++F M ++G++
Sbjct: 83 LSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLK 140
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 82/105 (78%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YTR GRIDLA K+F + KD ASW T+ILGYGM GELD AINLFEAM+EDGVEY
Sbjct: 585 LDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDS 644
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
VS + VL+ACS GGL+EKG+K+F M N++PT THYACMV LL
Sbjct: 645 VSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYACMVDLL 689
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y++ G ++LA +F+ + V+D S+ LI+GY + ++ LF MR G+ V
Sbjct: 486 DMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIV 544
Query: 67 SHIGVLTACSLGGLVEKGKK 86
S +GV++AC+ + +GK+
Sbjct: 545 SFMGVVSACANLAFIRQGKE 564
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G +A+ IF+++ V++ SW +I + A+ L M+ G
Sbjct: 384 IDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNN 443
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V+ VL AC+ G + GK E+ AR ++
Sbjct: 444 VTFTNVLPACARLGFLNVGK----EIHARIIR 471
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM--REDGVEY 63
L FY G A K+FD +P +D SW T+I + G + A+ F M + G++
Sbjct: 179 LAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQP 238
Query: 64 YPVSHIGVLTACS--------------------LGGLVEKG----------------KKF 87
V+ + VL C+ LGG V+ G KK
Sbjct: 239 DLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKV 298
Query: 88 FDEMQARNV 96
FDE+ RNV
Sbjct: 299 FDEIDERNV 307
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 86/105 (81%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFYT+ GRID+A ++F+++ KD ASW T+ILGYGM+GEL+ AI++FEAMR+D V+Y
Sbjct: 605 LDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDL 664
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
VS+I VL+ACS GGLVE+G ++F EM A+ ++PTE HY CMV LL
Sbjct: 665 VSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLL 709
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F+ KD S+ LI+GY + ++NLF MR G +
Sbjct: 505 IDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDV 563
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
VS +GV++AC+ +++GK+
Sbjct: 564 VSFVGVISACANLAALKQGKE 584
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G A+ IF L ++ SW +I Y + AI M+E G
Sbjct: 404 IDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNA 463
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ VL AC+ G + GK+
Sbjct: 464 VTFTNVLPACARLGFLGPGKE 484
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 86/105 (81%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFYT+ GRID+A ++F+++ KD ASW T+ILGYGM+GEL+ AI++FEAMR+D V+Y
Sbjct: 456 LDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDL 515
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
VS+I VL+ACS GGLVE+G ++F EM A+ ++PTE HY CMV LL
Sbjct: 516 VSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLL 560
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F+ KD S+ LI+GY + ++NLF MR G +
Sbjct: 356 IDMYAKCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDV 414
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
VS +GV++AC+ +++GK+
Sbjct: 415 VSFVGVISACANLAALKQGKE 435
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G A+ IF L ++ SW +I Y + AI M+E G
Sbjct: 255 IDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNA 314
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ VL AC+ G + GK+
Sbjct: 315 VTFTNVLPACARLGFLGPGKE 335
>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
Length = 778
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 85/110 (77%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ G +D A+KIF+R+ KD ASW T+ILGYGM G++DVA LF+ M++DG+EY
Sbjct: 564 LDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDH 623
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
VS+I VL+ CS GGLV++GKK+F +M A+N+KP + HYACMV LL + Q
Sbjct: 624 VSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQ 673
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+++LA IFDR KD S+ TLI+GY +++LF+ MR G+E+
Sbjct: 464 IDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDA 522
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
VS +G L+ACS ++GK+
Sbjct: 523 VSFMGCLSACSNLSAFKQGKE 543
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY GR A ++FD +P +D SW +L+ G L+ A M GV S
Sbjct: 163 FYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVAS 222
Query: 68 HIGVLTAC 75
+ +L AC
Sbjct: 223 LVSILPAC 230
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ IF+ + V++ SW +I G A L M+++G
Sbjct: 363 MDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNS 422
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ + +L ACS V+ GK+
Sbjct: 423 FTLVNLLPACSRVASVKMGKQ 443
>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
Length = 771
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 85/110 (77%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ G + A+KIF+R+ KD ASW T+ILGYGM G++DVA LF+ M++DGV+Y
Sbjct: 557 LDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDYDH 616
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
VS+I VL+ACS GGLV++GKK+F +M A+N+KP + HYACMV LL + Q
Sbjct: 617 VSYIAVLSACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACMVDLLGRAGQ 666
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ +A IFDR KD S+ TLI+GY +++LF+ MR G+EY
Sbjct: 457 IDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDA 515
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR--NVKP 98
VS +G L+AC+ ++GK+ + R N P
Sbjct: 516 VSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHP 550
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A+ IF+ + ++ SW +I G A +L M+++G
Sbjct: 356 MDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNS 415
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ + +L ACS V+ GK+
Sbjct: 416 FTLVNLLPACSRVASVKMGKQ 436
>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
Length = 601
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 85/113 (75%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ G + A+KIF+++ KD ASW T+ILGYGM G++D+A LFE M+ DG++Y
Sbjct: 385 LDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDH 444
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
VS+I VL ACS GGLV+KGKK+F +M A+N++P + HYACMV LL + Q ++
Sbjct: 445 VSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSK 497
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G++ LA IF+R KD S+ TLILGY ++ LF+ MR G++Y
Sbjct: 285 IDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDA 343
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
VS +G L+AC+ + + GK+
Sbjct: 344 VSFMGALSACTNLSVFKHGKE 364
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A+ IF+++ ++ SW +I G A L M++ G
Sbjct: 184 VDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNS 243
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
++ + VL AC+ ++ GK+
Sbjct: 244 ITLVNVLPACARMASLKMGKQ 264
>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 780
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 85/113 (75%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ G + A+KIF+++ KD ASW T+ILGYGM G++D+A LFE M+ DG++Y
Sbjct: 564 LDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYDH 623
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
VS+I VL ACS GGLV+KGKK+F +M A+N++P + HYACMV LL + Q ++
Sbjct: 624 VSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACMVDLLGRAGQLSK 676
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G++ LA IF+R KD S+ TLILGY ++ LF+ MR G++Y
Sbjct: 464 IDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDA 522
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
VS +G L+AC+ + + GK+
Sbjct: 523 VSFMGALSACTNLSVFKHGKE 543
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY G+ A ++FD +P +D SW +L+ + + G A +M G S
Sbjct: 163 FYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVAS 222
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ V+ AC E+ +KF + A VK
Sbjct: 223 LVSVVPACG----TEQEEKFGLSIHALAVK 248
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A+ IF+++ ++ SW +I G A L M++ G
Sbjct: 363 VDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNS 422
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
++ + VL AC+ ++ GK+
Sbjct: 423 ITLVNVLPACARMASLKMGKQ 443
>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like, partial [Brachypodium distachyon]
Length = 735
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 80/110 (72%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT+ G +D A+KIF+R+ KD ASW +I+GYGM G++D A +LF+ M++ GV Y
Sbjct: 521 LGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDH 580
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
VS+I VL+ CS GGLVE+GKK+F M A+N++P + HYACMV LL + Q
Sbjct: 581 VSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQMHYACMVDLLGRSGQ 630
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ LA IFD L KD S+ TLILGY ++NLF+ + G+EY
Sbjct: 421 IDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDA 479
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+S +G LTAC+ ++GK+
Sbjct: 480 ISFMGALTACTNLSSFKQGKE 500
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F+++ V++ SW +I G A L M++DG
Sbjct: 320 VDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNS 379
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
++ + +L ACS ++ GK+
Sbjct: 380 ITLVNLLPACSRMASLKTGKQ 400
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY G A ++FD +P +D SW +L+ + D A +M GV S
Sbjct: 120 FYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVAS 179
Query: 68 HIGVLTACSL 77
+ V+ AC +
Sbjct: 180 LVSVVPACGV 189
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 15/88 (17%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASW---ITLILGYGMLGELDVAINLFEAMREDGVE 62
+D Y + G ++ + K+F+ +P ++ SW I L G+ G++ + LF M E G
Sbjct: 219 VDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDV---LALFRGMSERG-- 273
Query: 63 YYPVSHIGVLTACS-LGGLVEKGKKFFD 89
+ P G +T S L LVE G +FD
Sbjct: 274 FMP----GSITLSSLLPALVELG--YFD 295
>gi|255565109|ref|XP_002523547.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537254|gb|EEF38886.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 555
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 70/82 (85%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFYT+ G+IDLA KIF R+ KD+ASW T+ILG GMLGEL+ AINLFEAMREDGVEY
Sbjct: 456 LDFYTKCGKIDLACKIFYRISEKDAASWNTIILGVGMLGELEAAINLFEAMREDGVEYDS 515
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
VS+I VL+ACS GGLVEKGKK+
Sbjct: 516 VSYIAVLSACSHGGLVEKGKKY 537
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G ++LA +F+ + ++D S+ LI+GY +++LF M G+E V
Sbjct: 357 DMYAKCGFLNLARNVFN-ISLRDEVSYNILIVGYSQTTNSSESLSLFLEMGLVGMERDVV 415
Query: 67 SHIGVLTACSLGGLVEKGKK 86
S++GV+ AC+ +++G++
Sbjct: 416 SYMGVIAACASLVALKQGEE 435
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G A+ +F + K+ SW ++ + AI L M+ DG P
Sbjct: 255 IDMYAKSGHSTQASVVFHLMTEKNVVSWNAMVANFAQNRFELAAIELVRQMQTDGAIPNP 314
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
V+ L AC+ G + GK E+ AR
Sbjct: 315 VTFTNALPACARMGFLRPGK----EIHAR 339
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
L FY TG + A K+FD + +D SW TL+ + + G A++LF M G
Sbjct: 52 LLFYGNTGYLSDAKKVFDEMLERDVVSWNTLLGAFSVNGFYLKALDLFYEMNLRSGFRPN 111
Query: 65 PVSHIGVLTACS 76
V+ + VL C+
Sbjct: 112 MVTVVSVLPVCA 123
>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Brachypodium distachyon]
Length = 648
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY R G + A ++F+ +P K SW LI GYGM G +VAINLF+ M +G+
Sbjct: 316 INFYARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLFQTMVSEGIRPDN 375
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ +G+L+ACS G+ ++G+K+F M+ A ++PT HY CMV LL
Sbjct: 376 VAMVGLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLL 421
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 5/115 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M+ +D Y + GR+DLA K+F + ++ +SW +LI+GY M G++ A+ F+ MRE G
Sbjct: 404 MLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAG 463
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV---KPTETHYACMVYLLIK 112
V V+ +GVL+AC GG++ +GK +FD M +NV KP HY CMV LL K
Sbjct: 464 VPPNQVTFVGVLSACVHGGMINEGKHYFDMM--KNVYGFKPQLPHYGCMVDLLSK 516
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G ++ A K+F++ + SW +I G G A+N+F +R+ G+E
Sbjct: 306 ISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDD 365
Query: 66 VSHIGVLTAC-SLGGL 80
+ + V +AC SLG L
Sbjct: 366 FTIVSVTSACGSLGNL 381
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 5/115 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M+ +D Y + GR+DLA K+F + ++ +SW +LI+GY M G++ A+ F+ MRE G
Sbjct: 399 MLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAG 458
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV---KPTETHYACMVYLLIK 112
V V+ +GVL+AC GG++ +GK +FD M +NV KP HY CMV LL K
Sbjct: 459 VPPNQVTFVGVLSACVHGGMINEGKHYFDMM--KNVYGFKPQLPHYGCMVDLLSK 511
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G ++ A K+F++ + SW +I G G A+N+F +R+ G+E
Sbjct: 301 ISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDD 360
Query: 66 VSHIGVLTAC-SLGGL 80
+ + V +AC SLG L
Sbjct: 361 FTIVSVTSACGSLGNL 376
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID A ++F +P ++ SW T+I GY G AIN+F+ MR G E
Sbjct: 533 VDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNN 592
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +LTACS GGL+ +G+++FD M+ + +KP HYACMV LL
Sbjct: 593 ITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLL 638
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY G + A ++FD KD +W T+I GY + A+ +FE M VE
Sbjct: 299 IHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNE 358
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ I V++ACS G +E GK+ ++++ +N++ + + + ++ + +K
Sbjct: 359 VTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVK 405
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A + FD+ P K++ W +I GY + ++ LF M E GV P+ H
Sbjct: 434 YAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGV--VPIEH 491
Query: 69 --IGVLTAC 75
+ VL+AC
Sbjct: 492 TLVSVLSAC 500
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
LD Y + + A ++FDR+ KD SW +++ GY G+L+ A F+ R++ V +
Sbjct: 400 LDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWS 459
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
++ S ++ K F EM R V P E
Sbjct: 460 -----AMIAGYSQNNKPKESLKLFHEMMERGVVPIE 490
>gi|297727903|ref|NP_001176315.1| Os11g0114800 [Oryza sativa Japonica Group]
gi|255679719|dbj|BAH95043.1| Os11g0114800, partial [Oryza sativa Japonica Group]
Length = 483
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+DLA K+FDR+ ++D W +I+G+ + G A+ LF++M+ +E P
Sbjct: 335 IDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCSYEALELFDSMK---IEPNP 391
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+ +GVLTACS GGLV +G+K+F+ M + + P HY CM+ +L +Y +
Sbjct: 392 VTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGR 442
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G +D A+++F +P +D S +LI GY LG+ A+ +F+ M+E+ +E ++ + +L
Sbjct: 241 GYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLIL 300
Query: 73 TACSLGGLVEKGKKFFDEMQARNV 96
AC+ G +E G +Q++ +
Sbjct: 301 GACAKDGKLELGTDIHINLQSKGI 324
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR+ A K FD +P K++ SW L+ + + A + +AM E + ++
Sbjct: 172 VSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAMPERNLSWW- 230
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ + S+ G +++ + F EM R+V
Sbjct: 231 --NAEIARNVSI-GYMDEASRLFREMPQRDV 258
>gi|77548396|gb|ABA91193.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125533163|gb|EAY79711.1| hypothetical protein OsI_34859 [Oryza sativa Indica Group]
gi|125575980|gb|EAZ17202.1| hypothetical protein OsJ_32710 [Oryza sativa Japonica Group]
Length = 537
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+DLA K+FDR+ ++D W +I+G+ + G A+ LF++M+ +E P
Sbjct: 389 IDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCSYEALELFDSMK---IEPNP 445
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+ +GVLTACS GGLV +G+K+F+ M + + P HY CM+ +L +Y +
Sbjct: 446 VTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGR 496
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G +D A+++F +P +D S +LI GY LG+ A+ +F+ M+E+ +E ++ + +L
Sbjct: 295 GYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLIL 354
Query: 73 TACSLGGLVEKGKKFFDEMQARNV 96
AC+ G +E G +Q++ +
Sbjct: 355 GACAKDGKLELGTDIHINLQSKGI 378
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR+ A K FD +P K++ SW L+ + + A + +AM E + ++
Sbjct: 226 VSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAMPERNLSWW- 284
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ + S+ G +++ + F EM R+V
Sbjct: 285 --NAEIARNVSI-GYMDEASRLFREMPQRDV 312
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FDR+P KD W +++GYG+ G+ +I LF AMR+ GV
Sbjct: 417 IDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPND 476
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ +G+LTAC GLVE+G F M+ ++P HYAC+V LL
Sbjct: 477 VTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLL 521
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I AN +F RL + SW ++I GY G+ A+ +F MR+ V ++
Sbjct: 217 LYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIA 276
Query: 68 HIGVLTACSLGGLVEKGKK 86
+ VL A + +E GK
Sbjct: 277 LVSVLRAYTDVEDLEHGKS 295
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I + Y R G+++L ++FD++ +D SW +LI YG+ G AI +FE M +G
Sbjct: 315 VISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNG 374
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQ 115
VE P+S + VL ACS GLV++GK F+ M A + P+ HYACMV LL + N+
Sbjct: 375 VEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANR 430
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ +F+++PVK+ SW +I Y G+ A+ LF + + + P
Sbjct: 217 VDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCP 276
Query: 66 VS 67
S
Sbjct: 277 NS 278
>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera]
gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+DLA ++F R+ + +SW ++I+GY M G+L A+ F MRE GV
Sbjct: 274 VDMYGKCGRMDLAYRVFSRMDEPNVSSWTSMIVGYAMHGQLYDALECFRCMREAGVRPNH 333
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+AC GG V++GK +FD M A + P HY CMV LL
Sbjct: 334 VTFIGVLSACVHGGAVQEGKYYFDMMTTAYGLVPRMQHYGCMVDLL 379
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G A+K+F++ + SW +I G G A+ +F MR+ G E
Sbjct: 171 ISVYSKAGEFQNAHKVFEQNRFRKLGSWNAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDE 230
Query: 66 VSHIGVLTAC-SLGGL 80
V+ + V +AC SLG L
Sbjct: 231 VTMVSVTSACGSLGHL 246
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +DLA K+FDR+ ++D W +I+G+ + G A+ LF++M+ +E P
Sbjct: 317 IDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMK---IEPNP 373
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+ +GVLTACS GGLV +G+K+F+ M + + P HY CM+ +L +Y +
Sbjct: 374 VTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGK 424
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G +D A +IF +P +D+ SW +LI GY LG+ A+ +F+ M+E+G++ ++ +
Sbjct: 220 VRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLV 279
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
VL AC+ G ++ G +Q + +
Sbjct: 280 LVLGACAKIGKLDLGTNIHRNLQNKGI 306
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A +IF L VKD+ASW ++I G M G+ A+ LF M++ GV
Sbjct: 412 IEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDD 471
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IGVL+ACS GGLVE+G+KFF+ M+ +KP HY C+V LL
Sbjct: 472 ITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLL 517
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + +A +F+ +P K+ W T++ GY GEL+ A LFE P
Sbjct: 280 LDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEG--------SP 331
Query: 66 VSHIGVLTACSLGGLVE-----KGKKFFDEMQARNVKP 98
+ + + TA + G V+ + F EMQ R VKP
Sbjct: 332 IRDVVIWTA-MINGYVQFNRFDEAVALFREMQIRKVKP 368
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G ++ A ++F+ P++D W +I GY D A+ LF M+ V+
Sbjct: 314 YANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIV 373
Query: 69 IGVLTACSLGGLVEKGK---KFFDE 90
+ +LT C+ G +E+GK +F DE
Sbjct: 374 VSLLTGCAQTGAIEQGKWIHEFIDE 398
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
+D Y + D+ +FD +P +D SW +I GY + AIN+F M+E+ G+
Sbjct: 179 IDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPD 238
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ + L+AC+ +E GKK
Sbjct: 239 EATVVSTLSACTALKRLELGKK 260
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +DLA K+FDR+ ++D W +I+G+ + G A+ LF++M+ +E P
Sbjct: 303 IDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMK---IEPNP 359
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+ +GVLTACS GGLV +G+K+F+ M + + P HY CM+ +L +Y +
Sbjct: 360 VTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGK 410
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G +D A +IF +P +D+ SW +LI GY LG+ A+ +F+ M+E+G++ ++ +
Sbjct: 206 VRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLV 265
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
VL AC+ G ++ G +Q + +
Sbjct: 266 LVLGACAKIGKLDLGTNIHRNLQNKGI 292
>gi|357129190|ref|XP_003566249.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like, partial [Brachypodium distachyon]
Length = 453
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 65/102 (63%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++F +P +D SW TLI+G+G+ G DVA+ LF+ M +GVE
Sbjct: 241 VDMYVKCGELAFAEQVFSMMPRRDVISWSTLIVGHGLSGRSDVALRLFDEMGIEGVEQNS 300
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
V+ +G L+AC+ G+V+K F++M+ + +KP HY+CM
Sbjct: 301 VTFLGALSACAHSGMVDKAYAIFEQMKQQGIKPELKHYSCMA 342
>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
Length = 646
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++F+ R G + A ++FD +P + SW TLI+GYGM G+ D+A++LFE M +
Sbjct: 315 INFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDS 374
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ +G+L+ACS G+ ++G+K+F M+ ++P HY CMV LL
Sbjct: 375 VAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLL 420
>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
Length = 602
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++F+ R G + A ++FD +P + SW TLI+GYGM G+ D+A++LFE M +
Sbjct: 271 INFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFETMVSEATAPDS 330
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ +G+L+ACS G+ ++G+K+F M+ ++P HY CMV LL
Sbjct: 331 VAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLL 376
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I + Y R G++D+ ++FDR+ +D SW +LI YG+ G AI +FE M +G
Sbjct: 322 VISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANG 381
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
PV+ + VL ACS GLVE+GK+ F+ M + +KP HYACMV LL + N+
Sbjct: 382 ASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANR 437
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G +D A+ +F+ +PV++ SW +I Y G+ A+ F M + + P
Sbjct: 224 VDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSP 283
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ +E+G+
Sbjct: 284 NSVTMVSVLQACASLAALEQGR 305
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +DLA K+FDR+ ++D W +I+G+ + G A+ LF++M+ +E P
Sbjct: 186 IDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMK---IEPNP 242
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+ +GVLTACS GGLV +G+K+F+ M + + P HY CM+ +L +Y +
Sbjct: 243 VTFLGVLTACSHGGLVNEGRKYFNSMIEDYRIVPYVKHYGCMIDMLCRYGK 293
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G +D A +IF +P +D+ SW +LI GY LG+ A+ +F+ M+E+G++ ++ +
Sbjct: 89 VRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLV 148
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
VL AC+ G ++ G +Q + +
Sbjct: 149 LVLGACAKIGKLDLGTNIHRNLQNKGI 175
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 13/118 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV------------AINLF 53
LD YT+ G ++ A ++FD++P KD SW T+++GY +GE D AI LF
Sbjct: 279 LDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALF 338
Query: 54 EAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
M+ED V+ V+ +L ACS GLVE+G+ FF++M+ V P HYACMV +L
Sbjct: 339 SKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDIL 396
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY + G + L ++F P +D SW ++I + G + A+ LF+ M V+
Sbjct: 178 IHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNG 237
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ +GVL+AC+ E G+
Sbjct: 238 ITMVGVLSACAKKSDFEFGR 257
>gi|76556518|emb|CAJ32535.1| pentatricopeptide repeat-containing protein [Hordeum vulgare subsp.
vulgare]
Length = 652
Score = 94.4 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++F+ R G + A ++FD +P K SW LI GYGM G D+AIN F+ M G+
Sbjct: 318 INFHARCGSLPQAQQLFDEMPRKSIVSWTALITGYGMHGHGDIAINFFQRMVSQGIRPDN 377
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS + +L+ACS G E+G K+F M++ ++PT HYACMV LL
Sbjct: 378 VSMVALLSACSHAGKYEEGCKYFFAMESTYKLRPTLEHYACMVDLL 423
Score = 42.0 bits (97), Expect = 0.053, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 17 LANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTA 74
LA ++FD +P+ +D SW ++ + G A+ L+ MR GVE ++ +GVL++
Sbjct: 224 LARQVFDEMPLATRDLVSWTAVLSAHAQGGLAVDALELYRRMRGHGVEPDALTLVGVLSS 283
Query: 75 CS 76
CS
Sbjct: 284 CS 285
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++F+ +P K+ SW ++I + M G+ D AI LF M+E +E
Sbjct: 391 IDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+ IGVL ACS GLVE+G+KFF M + P HY CMV L + N
Sbjct: 451 VTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANH 501
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GRI A +FD++ +D +W +I GY D + L+E M+ G E +
Sbjct: 161 YAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIIL 220
Query: 69 IGVLTACSLGGLVEKGK 85
VL+AC+ G + GK
Sbjct: 221 CTVLSACAHAGNLSYGK 237
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A IFDR+ KD W +I GY + A+ LF M+ +
Sbjct: 290 LSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQ 349
Query: 66 VSHIGVLTACS-LGGLVE 82
++ + V++AC+ +G LV+
Sbjct: 350 ITMLSVISACANVGALVQ 367
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y G + LA +++D+LP K ++ GY LG + A +F+ M E +
Sbjct: 259 VNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDL---- 314
Query: 66 VSHIGVLTACSLGGLVE-----KGKKFFDEMQARNVKPTE 100
V + + G E + + F+EMQ R + P +
Sbjct: 315 -----VCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQ 349
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 3/107 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ID A + F+ +PVK+S +W LI G G A+ LF +MRE G+E
Sbjct: 364 VDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTD 423
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN--VKPTETHYACMVYLL 110
V+ IGVL ACS LVE+G++ FD M AR+ +KP HY CMV LL
Sbjct: 424 VTFIGVLMACSHSCLVEEGRRHFDSM-ARDYGIKPRVEHYGCMVDLL 469
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G I A ++FD + +D +W +I GY + A+ LF M+
Sbjct: 258 LVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLAR 317
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
VE V+ + VL+AC++ G +E GK
Sbjct: 318 VEPNDVTMVSVLSACAVLGALETGK 342
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDL+ ++FD++P +D SW T+I GYG+ G A LF +M+ G E
Sbjct: 449 IDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDD 508
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ I ++ ACS GLV +GK +FD M + + P HY CMV LL +
Sbjct: 509 VTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 556
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I+ A +FD + +KD+ S+ L+ GY G+ + A +F+ M+ V+
Sbjct: 348 LSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDI 407
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ G+
Sbjct: 408 ATMVSLIPACSHLAALQHGR 427
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ L+ + G++ LA ++FDR+P D+ ++ LI Y G AI+L+ +M V
Sbjct: 37 QQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVP 96
Query: 63 YYPVSHIGVLTACS 76
+ VL ACS
Sbjct: 97 PNKYTFPFVLKACS 110
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + + A ++F + V++ +W LI G+ + + A NLF+ M +G+ +
Sbjct: 246 LDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLS 305
Query: 66 VSHIG-VLTACS 76
+ + L C+
Sbjct: 306 ATSVASALRVCA 317
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDL+ ++FD++P +D SW T+I GYG+ G A LF +M+ G E
Sbjct: 449 IDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDD 508
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ I ++ ACS GLV +GK +FD M + + P HY CMV LL +
Sbjct: 509 VTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 556
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I+ A +FD + +KD+ S+ L+ GY G+ + A +F+ M+ V+
Sbjct: 348 LSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDI 407
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ G+
Sbjct: 408 ATMVSLIPACSHLAALQHGR 427
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ L+ + G++ LA ++FDR+P D+ ++ LI Y G AI+L+ +M V
Sbjct: 37 QQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVP 96
Query: 63 YYPVSHIGVLTACS 76
+ VL ACS
Sbjct: 97 PNKYTFPFVLKACS 110
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + + A ++F + V++ +W LI G+ + + A NLF+ M +G+ +
Sbjct: 246 LDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLS 305
Query: 66 VSHIG-VLTACS 76
+ + L C+
Sbjct: 306 ATSVASALRVCA 317
>gi|255565775|ref|XP_002523877.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536965|gb|EEF38603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 302
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A K+FDR+P ++ SW T++ GYGM G+ + LF M E+G
Sbjct: 147 INMYAKCGNLAGARKVFDRMPARNEVSWATMMAGYGMHGKGGEVLVLFNRMVEEGSSVDA 206
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V VL+ACS GG+VEKG ++F M+ R VKP+ HY CMV +L
Sbjct: 207 VCLTAVLSACSHGGMVEKGAEYFGMMEERFGVKPSLEHYTCMVDML 252
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M+ +D Y + GR+D A ++F+ +P ++ SW ++I GY G A+ F MRE G
Sbjct: 256 MMNSLIDMYGKCGRMDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEALECFRQMREFG 315
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V ++ +GVL+AC GGLVE+GK +F M++ N++P +HY C+V LL + Q
Sbjct: 316 VRPNKITFVGVLSACVHGGLVEEGKAYFAMMKSEFNLEPGLSHYGCIVDLLSRDGQ 371
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A +FD P + SW +I G G + A+ +F MR G E
Sbjct: 158 ITLYCKAGELENARNVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDD 217
Query: 66 VSHIGVLTACSLGGL 80
+ + V +AC GGL
Sbjct: 218 FTMVSVTSAC--GGL 230
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 65/100 (65%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY + + + +FD++P +D SW ++ILGYG+ G +D+A++LF+ MR GV+ V+
Sbjct: 255 FYVKCAALGYSYNLFDKMPERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVT 314
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
+G L+AC+ G+VE+ +F+ M+ V P HYACMV
Sbjct: 315 FLGALSACTHTGMVERAHTYFEMMKEYGVAPELKHYACMV 354
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++ A +FD +P +D+ W ++ GY E +A+++F M GV V
Sbjct: 155 YVTFGKVLDARVLFDEMPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVM 214
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
I +L AC G ++ GK + R + +VY +K
Sbjct: 215 ISLLLACGQLGWLKHGKSVHGWITRRCLALGLNLGNALVYFYVK 258
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 66/106 (62%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y++ G + +A+ +FDR+ + SW +I GYGM G+++ I+LF M G++ +
Sbjct: 744 DMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDI 803
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ + +L+ACS G VE+GK +F+ M V+P H+ACMV LL +
Sbjct: 804 TFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSR 849
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + ANK+F+++ K +W ++I G+ G AI LF+ M + V+
Sbjct: 642 IDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDK 701
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + V+ ACS G +EKGK
Sbjct: 702 LTFLSVIQACSHLGYLEKGK 721
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G LA +FD +P KD +W +I GYGM G + AI F MR+ G+E
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDE 300
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQKA 117
VS I +L ACS GL+++G +FF+ MQ NVKP HYAC+V LL + + A
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLA 353
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +D A +FD + V+ +W +LI Y G D AI LF M +GV
Sbjct: 40 LDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDI 99
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
+ VL AC+ G +E GK + ++ +++
Sbjct: 100 FTITTVLHACACNGSLENGKDVHNYIRENDMQSN 133
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFE----AMREDGV 61
+D Y + G ++ AN +F +PVKD SW T+I GY + A++LF M+ DG
Sbjct: 141 MDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGT 200
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKK---------FFDEMQARNV 96
+L AC+ +++GK+ FF + Q N
Sbjct: 201 TL-----ACILPACASLASLDRGKEVHGHILRNGFFSDQQVANA 239
>gi|296083925|emb|CBI24313.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 65/100 (65%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY + + + +FD++P +D SW ++ILGYG+ G +D+A++LF+ MR GV+ V+
Sbjct: 207 FYVKCAALGYSYNLFDKMPERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDVT 266
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
+G L+AC+ G+VE+ +F+ M+ V P HYACMV
Sbjct: 267 FLGALSACTHTGMVERAHTYFEMMKEYGVAPELKHYACMV 306
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 20 KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79
+ F +L +D+ W ++ GY E +A+++F M GV V I +L AC G
Sbjct: 118 EFFLKLWKRDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLG 177
Query: 80 LVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
++ GK + R + +VY +K
Sbjct: 178 WLKHGKSVHGWITRRCLALGLNLGNALVYFYVK 210
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D + K+F+ + KD+ SW ++ GY + G D AI LF M+E V+
Sbjct: 319 IDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 378
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS + VL+AC GLVE+G+K F M + ++KP HYACMV LL
Sbjct: 379 VSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 424
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A ++FD++P +D +W +I G + VA +F+ M V+
Sbjct: 157 VDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQM----VDQDD 212
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS ++ + G + + FD+M+ NV
Sbjct: 213 VSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 243
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
++ Y+ + DLA +FD P W ++I Y + + A+ ++ M E G+E
Sbjct: 90 INLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERD 149
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
G++ S G +++ ++ FD+M R+V
Sbjct: 150 VFIGAGLVDMYSKMGDLKRAREVFDKMPKRDV 181
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 17 LANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76
+A ++FD++ +D SW T++ GY G + LF+ M+ V + ++ A
Sbjct: 199 VARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNV-----IIAAYM 253
Query: 77 LGGLVEKGKKFFDEMQARNVKPTETHY 103
G ++ F +M+ N P +
Sbjct: 254 QNGHAKEAISSFHQMRLENFHPNSVTF 280
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 66/106 (62%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y++ G + +A+ +FDR+ + SW +I GYGM G+++ I+LF M G++ +
Sbjct: 547 DMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDI 606
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ + +L+ACS G VE+GK +F+ M V+P H+ACMV LL +
Sbjct: 607 TFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSR 652
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + ANK+F+++ K +W ++I G+ G AI LF+ M + V+
Sbjct: 445 IDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDK 504
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + V+ ACS G +EKGK
Sbjct: 505 LTFLSVIQACSHLGYLEKGK 524
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A ++F+ +P + +A W +I Y G A+N+F M+E +E V+
Sbjct: 246 YGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTM 305
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
+GVL AC+ G V++G+ + R + P
Sbjct: 306 VGVLCACARLGRVKEGRSVHGFVIRRAMDP 335
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y +D A K FD +P++D +W +++L + G+ +++F M + VE
Sbjct: 142 LCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDS 201
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
V+ + V ACS G + G+ + R ++ +
Sbjct: 202 VTMLSVTEACSELGSLRLGRSVHGYVVRREIESNAS 237
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I + Y R G++++ ++FDR+ +D SW +LI YG+ G AI +FE M +G
Sbjct: 322 VISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANG 381
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
PV+ + VL ACS GLVE+GK+ F+ M + +KP HYACMV LL + N+
Sbjct: 382 ASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANR 437
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G +D A+ +F +PV++ SW +I Y G+ A+ F M + + P
Sbjct: 224 VDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSP 283
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ +E+GK
Sbjct: 284 NSVTMVSVLQACASLAALEQGK 305
>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
Length = 646
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++F+ R G + A ++FD +P + SW LI+GYGM G+ D+A++LFE M +
Sbjct: 315 INFHARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLFETMVSEATAPDS 374
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ +G+L+ACS G+ ++G+K+F M+ ++P HY CMV LL
Sbjct: 375 VAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLL 420
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++FD +P KD W +I GYGM G AI+ FE MR G+E
Sbjct: 502 VDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEE 561
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQKAR 118
S +L AC+ GL+++G K FD M++ N++P HYACMV LLI+ +R
Sbjct: 562 SSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSR 615
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ AN IF +LPVK+ SW T+I GY + A+ LF M++ ++
Sbjct: 402 MNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDD 460
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
V+ VL AC+ +EKG++ + R ++ H AC
Sbjct: 461 VTMACVLPACAGLAALEKGREIHGHI-LRKGYFSDLHVAC 499
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G ++ AN++F ++ SW ++I + G AI LF+ M+ G+
Sbjct: 301 LDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDI 360
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ V+ AC+ ++KG++ + ++ N+
Sbjct: 361 YAVTSVVHACACSNSLDKGREVHNHIKKNNM 391
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A +FD L +D SW ++I G M G + F M GV+ +
Sbjct: 203 YFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATL 262
Query: 69 IGVLTACSLGGLVEKGK 85
+ VL AC+ G + G+
Sbjct: 263 VNVLVACANVGNLTLGR 279
>gi|302776360|ref|XP_002971351.1| hypothetical protein SELMODRAFT_94907 [Selaginella moellendorffii]
gi|300161333|gb|EFJ27949.1| hypothetical protein SELMODRAFT_94907 [Selaginella moellendorffii]
Length = 201
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
LDFY + G +D A ++FD + +D +W LI GYG LG+ A F MRE+GV
Sbjct: 60 LDFYAKCGAMDCAQRVFDSIADWRDVVAWNCLIAGYGRLGDSGKATEAFGRMREEGVRPS 119
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ + VLT CS GLVE+G+K + M + V PT HY CMV LL + ++
Sbjct: 120 AITFVSVLTMCSHCGLVEEGRKCLESMAPKFGVHPTVQHYTCMVDLLARADR 171
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D + K+F+ + KD+ SW ++ GY + G D AI LF M+E V+
Sbjct: 675 IDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 734
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS + VL+AC GLVE+G+K F M + ++KP HYACMV LL
Sbjct: 735 VSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 780
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D+A ++FD++ +D SW T++ GY G + LF+ M+ V
Sbjct: 270 IDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINK 329
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
VS + A + +EKGK+
Sbjct: 330 VSAVSAFLAAAETIDLEKGKE 350
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G A F+R+ +D +W +LI GY +G+ AI++F +R +
Sbjct: 472 VSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDA 531
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ +GV+ AC+L +++G
Sbjct: 532 GTMVGVVPACALLNDLDQG 550
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A ++FD++P +D +W +I G + A++ F +M+ GVE
Sbjct: 171 VDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSS 230
Query: 66 VSHIGVLTA-CSLGGL 80
VS + + C L +
Sbjct: 231 VSLLNLFPGICKLSNI 246
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+ + DLA +FD P W ++I Y + + A+ ++ M E G+E
Sbjct: 70 INLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDK 129
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ VL AC+ +++G F E+ R ++
Sbjct: 130 YTFTFVLKACTGALNLQEGVWFHGEIDRRGLE 161
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
P + Y + G + A ++F L +D +W +I G + A++LF+ M+ ++
Sbjct: 369 PLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKP 428
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
V+ + +L AC+ L++ GK
Sbjct: 429 NRVTLMSILPACADLSLLKLGKS 451
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G + A +F++ KD +W +I Y G AI+ F MR +
Sbjct: 573 IDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPN 632
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ + VL A + +G F
Sbjct: 633 SVTFVSVLPAAAYLAAFREGMAF 655
>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
Length = 640
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++F+ R G + A ++FD +P K SW LI G+GM G DVA++LFE M +G+
Sbjct: 308 INFHARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGIRPDN 367
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ + + +ACS GL ++G+++F M++ ++PT HY CMV LL
Sbjct: 368 VAMVALFSACSHAGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDLL 413
>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
Length = 1056
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++F+ R G + A ++FD +P K SW LI G+GM G VA++LFE M +G+
Sbjct: 724 INFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAVSLFERMVSEGIHPDN 783
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ +GVL+ACS GL ++G+ +F M++ ++PT HY C+V LL
Sbjct: 784 VAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDLL 829
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR DLA KIF L K+ ++W LI G + G++ +I++FE MR G +
Sbjct: 352 IDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNG 411
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVLTAC+ GGLV++G++ F M + V+P HY CMV +L
Sbjct: 412 ITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDML 457
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I A ++F+++P ++ SW ++ Y GELDVA +F+ M G
Sbjct: 153 LGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNV-- 210
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++T + GL+ +K FDEM RN+ T
Sbjct: 211 VSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNT 246
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G + LA K+FD +PV++ SW T++ GY + GE++ A LF+ M E V VS
Sbjct: 220 FARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDV----VSW 275
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTE 100
+++ + + + F MQ+ NV P E
Sbjct: 276 TCMISGYAQARCYTETLELFRAMQSESNVLPNE 308
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 71/108 (65%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G+I ++ +IFDR+ +D SW T+I+GYG+ G A++LF+ ++ G++
Sbjct: 455 IDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDD 514
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ I VL+ACS GLV +GK +F M Q N+KP HY CMV LL +
Sbjct: 515 VTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLAR 562
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
LD Y + + A KIF+ + K+ W +I GY + + A+ L++ M G+
Sbjct: 252 LDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPT 311
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM 91
P + +L AC+ +++GKK M
Sbjct: 312 PATLATMLRACAQLTDLKRGKKLHCHM 338
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G + AI F MR+ G+E
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS I +L ACS GL+E+G +FF M+ N++P HYACMV LL
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLL 579
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G +D A ++F+++ ++ SW ++I GY G D AI L + M ++GV+
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDV 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
V+ +L AC+ G ++ GK D ++A N+
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNM 383
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 14 RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73
R + A+++FD+L +D SW ++I GY G + + +++ M G++ + I VL
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259
Query: 74 ACSLGGLVEKGK 85
C+ G + GK
Sbjct: 260 GCANSGTLSLGK 271
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY G + ++FD + K+ W ++ Y +G+ +I LF+ M E G+E
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE--- 197
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
G E + FD++ R+V
Sbjct: 198 ------------GKRPESASELFDKLCDRDV 216
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G + AI F MR+ G+E
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS I +L ACS GL+E+G +FF M+ N++P HYACMV LL
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLL 579
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G +D A ++F+++ ++ SW ++I GY G D AI L + M ++GV+
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
V+ +L AC+ G ++ GK D ++A N++
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNMESN 386
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 14 RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73
R + A ++FD+L +D SW ++I GY G + + +++ M G++ + I VL
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259
Query: 74 ACSLGGLVEKGK 85
C+ G + GK
Sbjct: 260 GCANSGTLSLGK 271
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ FY G + ++FD + K+ W ++ Y +G+ +I LF+ M E G+E
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G + AI F MR+ G+E
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 533
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS I +L ACS GL+E+G +FF M+ N++P HYACMV LL
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLL 579
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G +D A ++F+++ ++ SW ++I GY G D AI L + M ++GV+
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
V+ +L AC+ G ++ GK D ++A N++
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNMESN 386
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 14 RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73
R + A ++FD+L +D SW ++I GY G + + +++ M G++ + I VL
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 259
Query: 74 ACSLGGLVEKGK 85
C+ G + GK
Sbjct: 260 GCANSGTLSLGK 271
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ FY G + ++FD + K+ W ++ Y +G+ +I LF+ M E G+E
Sbjct: 141 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++F+ +P ++S +W +I G + G ++ AI F M + G+
Sbjct: 429 IDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDE 488
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVLTAC GGLVE+G+K+FD+M++R N+ P HY+CMV LL
Sbjct: 489 ITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLL 534
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G ++ +FD + K SW T+I+GY G LD+A LF M E
Sbjct: 292 LVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKN 351
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
V V+ ++ +C L + + F EMQ N+KP
Sbjct: 352 V----VAWNAMIGSCVQANLSFEALELFREMQWSNMKP 385
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G LA+K+FD V+D SW +LI GY + A+ +++ M + V+ V+ IGV+
Sbjct: 203 GESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVV 262
Query: 73 TACS 76
+AC+
Sbjct: 263 SACA 266
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G + AI F MR+ G+E
Sbjct: 336 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDE 395
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS I +L ACS GL+E+G +FF M+ N++P HYACMV LL
Sbjct: 396 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLL 441
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 54/91 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G +D A ++F+++ ++ SW ++I GY G D AI L + M ++GV+
Sbjct: 155 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDV 214
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
V+ +L AC+ G ++ GK D ++A N+
Sbjct: 215 VAITSILHACARSGSLDNGKDVHDYIKANNM 245
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 14 RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73
R + A+++FD+L +D SW ++I GY G + + +++ M G++ + I VL
Sbjct: 62 RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121
Query: 74 ACSLGGLVEKGK 85
C+ G + GK
Sbjct: 122 GCAKSGTLSLGK 133
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY G + ++FD + K+ W ++ Y +G+ +I LF+ M E G+E
Sbjct: 3 VSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE--- 59
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
G E + FD++ R+V
Sbjct: 60 ------------GKRSESASELFDKLCDRDV 78
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++FD + +K ASW +I G M G+ D A LF M DG+E
Sbjct: 404 IDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNE 463
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+AC GLV+ G++FF M Q + P HY CM+ LL
Sbjct: 464 ITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLL 509
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G +D A ++FD +PVKD SW +I GY +G A+ LFE MR+ V +
Sbjct: 205 YALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTI 264
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ VL+AC+ ++ G ++ R +
Sbjct: 265 VSVLSACAQSNALDLGNSMRSWIEDRGL 292
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G + A ++FD + +D SW +I GY + A+ LF M G
Sbjct: 298 LVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASG 357
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
VE ++ + +L +C+ G ++ GK
Sbjct: 358 VEPTEITFLSILPSCAHLGAIDLGK 382
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y ++G ++ A +FD+ +D+ S+ LI GY + G +D A LF+ M V
Sbjct: 171 INMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDV---- 226
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++ + G ++ F++M+ NV P E+
Sbjct: 227 VSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNES 262
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G + AI F MR+ G+E
Sbjct: 474 VDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDE 533
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS I +L ACS GL+E+G +FF M+ N++P HYACMV LL
Sbjct: 534 VSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLL 579
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G +D A ++F+++ ++ SW ++I GY G D AI L + M ++GV+
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDV 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
V+ +L AC+ G ++ GK D ++A N++
Sbjct: 353 VATTSILHACARSGSLDNGKDVHDYIKANNMESN 386
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 14 RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73
R + A+++FD+L +D SW ++I GY G + + +++ M G++ + I VL
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLV 259
Query: 74 ACSLGGLVEKGK 85
C+ G + GK
Sbjct: 260 GCANSGTLSLGK 271
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLI 37
+D YT+ G +D AN +F + VKD SW T+I
Sbjct: 394 MDMYTKCGSMDGANSVFSTMVVKDIISWNTMI 425
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY++ G++D A +FDR+ ++ SW LI GYG G + AI++FE M +G+
Sbjct: 376 VDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNH 435
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS+ GL E+G + F M + VKP H+ACM+ LL
Sbjct: 436 VTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELL 481
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ++ A+ +FD +P K W ++I GY + G + A++L+ MR+ GV+
Sbjct: 275 IDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDH 334
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ CS V + K+
Sbjct: 335 FTFSIIIRICSRLASVARAKQ 355
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G + A ++FD +P +++ SW T+I GY G A LF MRE+ + P +
Sbjct: 177 HVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTF 236
Query: 69 IGVLTA 74
++ A
Sbjct: 237 ATMIRA 242
>gi|224079119|ref|XP_002305756.1| predicted protein [Populus trichocarpa]
gi|222848720|gb|EEE86267.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A ++F+ +PV++ SW ++I GYG GE A+ LF M++ +E
Sbjct: 322 IDMYSKCGRIEDARRVFNYMPVRNVFSWTSMIDGYGKNGEPWEALELFHRMQQCNIEPNY 381
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G L+AC GLV KG++ FD M+ + KP HYACMV LL
Sbjct: 382 VTFLGALSACGHAGLVTKGREIFDSMERDYSTKPRMEHYACMVDLL 427
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G AIN F MR G+E
Sbjct: 596 VDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDE 655
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
VS I +L ACS GL+++G K F+ M+ ++P HYACMV LL +
Sbjct: 656 VSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLAR 703
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
LD Y++ G ++ A ++F+R+ K SW ++I GY G D AI LF+ M+ GV +
Sbjct: 395 LDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDV 454
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
Y V+ I L AC++ G ++ GK D ++ N++
Sbjct: 455 YAVTSI--LNACAINGNLKSGKIVHDYIRENNLETN 488
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + FY ++ A K+FD L +D SW ++I GY G D I +F M G
Sbjct: 288 VVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFG 347
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + + V AC+ G + GK
Sbjct: 348 VDIDLATMVNVFVACANIGTLLLGK 372
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
TL+ Y G+L+ AI +FE M E V VS ++T GL + K FDEM++R
Sbjct: 393 TLLDMYSKCGDLNSAIRVFERMDEKTV----VSWTSMITGYVREGLSDGAIKLFDEMKSR 448
Query: 95 NVKP 98
V P
Sbjct: 449 GVVP 452
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYP 65
D Y + G + A+ +F + KD SW T+I GY + A+ LF M RE +
Sbjct: 497 DMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTT 556
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
V+ I L AC+ ++KG++
Sbjct: 557 VACI--LPACASLAALDKGREI 576
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+R+P +D SW T+IL YG+ G + A+ LF M+E G +
Sbjct: 465 VDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDH 524
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +LTACS GLV++G ++F M++ + P HYAC+V LL
Sbjct: 525 IAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLL 570
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A+K+F+R+P++D ASW +I GY + + A+ F M+ G++
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ + VL AC+ +E+G++
Sbjct: 323 ITMVSVLPACAHLFALEQGQQI 344
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
YT+ G ++ A ++FDR+P +D SW +I GY G+ A+ LF M+ +G++
Sbjct: 163 SMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSS 222
Query: 67 SHIGVLTACSLGGLVEKGKKF 87
+ + V+ C+ +E+GK+
Sbjct: 223 TLVSVMPVCAHLLALEQGKQI 243
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A K+F+R+P K+ +W +I GY G A+ LF M+ G++
Sbjct: 364 VNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDS 423
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ + VL AC+ +E+GK+
Sbjct: 424 FAIVSVLPACAHFLALEQGKQI 445
>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 520
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ID A ++FD++ K+ SW ++I GYG G + A+ LF M+E +E
Sbjct: 315 LDMYAKCGGIDDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNY 374
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL+ACS GLV+KG + F+ MQ ++KP HYACMV L+
Sbjct: 375 VTFLGVLSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACMVDLM 420
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +DLA ++FDR KD W +I+GYG+ G AI+LF AM++ GV
Sbjct: 413 IDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPND 472
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ +G+LTAC+ GLVE+G + F M+ ++ HYAC+V LL
Sbjct: 473 VTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLL 517
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + GR++ A +F+ L ++ SW ++I GYG G A+ +F MR+ V+ ++
Sbjct: 213 LYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIA 272
Query: 68 HIGVLTACSLGGLVEKGKK 86
+ VL A + +E+GK
Sbjct: 273 LVSVLRAYTDVEDLEQGKS 291
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G++ +A FD++ + + W +I GY G + A+ LF+ M + ++
Sbjct: 315 YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITV 374
Query: 69 IGVLTACSLGGLVEKGK---KFFDEMQARN 95
+ AC+ G ++ K + ++ + RN
Sbjct: 375 RSAILACAQVGSLDLAKWMGDYINKTEYRN 404
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G I A K+FD P W +I GY AI ++ M+ GV + VL
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176
Query: 73 TACSLGGLVEKGKK 86
ACS ++E GK+
Sbjct: 177 KACSGVPVLEVGKR 190
>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M+ +D Y + GR+DLA+ IF+ + ++ SW ++I+GY G A+ F MRE G
Sbjct: 257 MLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFG 316
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V ++ +GVL+AC GGLVE+GK +F M++ ++P +HY C+V LL + Q
Sbjct: 317 VRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQ 372
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A K+FD P + SW +I G G + A+ +F M+ G+E
Sbjct: 159 ITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDD 218
Query: 66 VSHIGVLTACSLGGL 80
+ + V +C GGL
Sbjct: 219 FTMVSVTASC--GGL 231
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M +D Y + GR+DLA ++F + ++ +SW ++I+GY M G A+ F MRE G
Sbjct: 237 MSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRESG 296
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ V+ IGVL+AC GG V++G+ +FD M+ + P HY CMV LL
Sbjct: 297 VKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLL 347
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G D A+K+FD SW LI G G AI +F M+ G E
Sbjct: 139 INLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDG 198
Query: 66 VSHIGVLTAC-SLGGL 80
++ + V++AC S+G L
Sbjct: 199 ITMVSVMSACGSIGDL 214
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M +D Y + GR+DLA ++F + ++ +SW ++I+GY M G A+ F MRE G
Sbjct: 237 MSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRESG 296
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ V+ IGVL+AC GG V++G+ +FD M+ + P HY CMV LL
Sbjct: 297 VKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLL 347
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G D A+K+FD SW LI G G AI +F M+ G E
Sbjct: 139 INLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDG 198
Query: 66 VSHIGVLTAC-SLGGL 80
++ + V+ AC S+G L
Sbjct: 199 ITMVSVMCACGSIGDL 214
>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+++ + ++FD + KD W +I GYGM G + AI +F M E V+
Sbjct: 557 VDMYAKCGQLEKSREVFDSMMEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNE 616
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + +L+AC+ GLVE+GK F +MQ+ +VKP HY CMV LL
Sbjct: 617 ITFLSLLSACAHAGLVEEGKNVFAKMQSYSVKPNLKHYTCMVDLL 661
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+ Y+R ++ A K+FD +PV+D +W L++GY GE ++ + M G
Sbjct: 152 VSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVG 206
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A ++F R W +I+GYG +G+ I LF M+ G+
Sbjct: 357 LSMYCKFGMLSFAERLFQR-SQGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSES 415
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V + + +C G + G+
Sbjct: 416 VGIVSAIASCGQLGEINLGRS 436
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ++ A +FDR+ KD +W ++I+GY M G A+ LFE M E G +
Sbjct: 315 IDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTD 374
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IG+L+AC GGLVE+G+ FF M+ + ++P HY CMV LL
Sbjct: 375 ITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLL 420
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G + A ++FD++P + S T++ Y +GELD A +LFE M+E V +
Sbjct: 183 VDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWN 242
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
V ++ + G+ + K F M P E
Sbjct: 243 V----MIGGYAQSGVPNESLKLFRRMLVAKAIPNE 273
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G ++ A +FDR +D W +I+GYG+ G+ AI+L+ AM DGV
Sbjct: 365 IDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPND 424
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ +G+L AC+ G+V +G FF+ M + P + HYAC++ LL
Sbjct: 425 VTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLL 469
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G++ A +FD++ + W +I GY G AI+LF M V +S
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISI 326
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
++AC+ G +E+ ++ DE +R+
Sbjct: 327 TSAISACAQVGSLEQA-RWMDEYVSRS 352
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSA--SWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
Y + R+ A +F+ LP+ + SW ++ Y GE A+ +F MR+ V+
Sbjct: 163 LYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDC 222
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + VL A + +E+G+
Sbjct: 223 VALVSVLNAFTCLQDLEQGRS 243
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ A+++FD + D SW L++GY G+ I+LFE M GV+ V+
Sbjct: 422 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVT 481
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYL 109
IGVL+ACS GLV+KG+ +F MQ ++ P + HY CM+ L
Sbjct: 482 FIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDL 524
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ + LA +F R+ K+ SW +I+GYG G + A+ +F M+ DG++
Sbjct: 319 VDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDD 378
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
+ V+++C+ +E+G +F ++P T +V L
Sbjct: 379 FTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTL 422
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A +F+ + +DS +W T++ G G A+++F MR +GV + +LTAC
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGA 289
Query: 78 GGLVEKGKK 86
+E+GK+
Sbjct: 290 LAALEEGKQ 298
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ A+++FD + D SW L+ GY G+ I+LFE M +G++ V+
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVT 482
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
IGVL+ACS GLVEKG +FD MQ + P + HY CM+ L Y++ R
Sbjct: 483 FIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDL---YSRSGR 531
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ I LA +F R+ ++ SW +I+GYG + A+ F M+ DG++
Sbjct: 320 VDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDD 379
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 380 FTLGSVISSCANLASLEEGAQF 401
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R I+ A +F + +DS +W T++ G G A+++F MR +GV +
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283
Query: 71 VLTACSLGGLVEKGKK 86
+LTAC +E+GK+
Sbjct: 284 ILTACGALAALEEGKQ 299
>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
Length = 672
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEY- 63
LDFYT+ GRI LA IFDR+ KD ASW T+ILGYGMLGELD AI+L E MR+D VE
Sbjct: 487 LDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLLTENMRKDDVESD 546
Query: 64 YPVSHIGVLTACSLG--GLVEKGKKF 87
VS I VL+ACS G GL+E+ +
Sbjct: 547 DSVSFIAVLSACSHGRAGLMEEAAEL 572
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y ++G + LA +FD ++D S+ LI+G + +++LF M+ G++ V
Sbjct: 388 DMYAKSGHLKLARNVFDT-SLRDEVSYNILIVGXSQTSDCSESLSLFSEMQLMGLKQDNV 446
Query: 67 SHIGVLTACSLGGLVEKGKK 86
S +G L+AC+ +++GK+
Sbjct: 447 SFMGALSACANLTAIKQGKE 466
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G A+ +F +L K+ SW +I + VA+ L M++ G
Sbjct: 286 IDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNS 345
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ VL AC+ GLV GK E+ AR++ H C L +
Sbjct: 346 VTFTNVLPACARMGLVRPGK----EIHARSI-----HMGCAFDLFVS 383
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR 57
L FY G + A ++FD +P KD SW T+I + + G ++LF MR
Sbjct: 83 LSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGCWXEVLDLFGEMR 134
>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Cucumis sativus]
Length = 605
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++FDR+P ++ +W ++I G+ G +AI +FEAM ++G++
Sbjct: 403 VDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDC 462
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+S IG+L ACS GLV++ + +FD M + +KP HY CMV LL
Sbjct: 463 ISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLL 508
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 17 LANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76
L ++FD L VKD SW ++I GY G+ +AI LF M + G+E + V+ ACS
Sbjct: 114 LTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACS 173
Query: 77 LGGLVEKGKKF 87
G + GK F
Sbjct: 174 EIGNLVLGKCF 184
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ + ++FDR+ ++S SW L+ Y G+ + A+NLF M+E V+ Y
Sbjct: 306 VDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMKE--VDLY- 362
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
S V+ AC+ V GK+
Sbjct: 363 -SFGTVIRACAGLAAVTPGKE 382
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ A+++FD + D SW L+ GY G+ I+LFE M +G++ V+
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVT 482
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
IGVL+ACS GLVEKG +FD MQ + P + HY CM+ L Y++ R
Sbjct: 483 FIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDL---YSRSGR 531
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ I LA +F R+ ++ SW +I+GYG + A+ F M+ DG++
Sbjct: 320 VDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDD 379
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 380 FTLGSVISSCANLASLEEGAQF 401
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R I+ A +F + +DS +W T++ G G A+++F MR +GV +
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283
Query: 71 VLTACSLGGLVEKGKK 86
+LTAC +E+GK+
Sbjct: 284 ILTACGALAALEEGKQ 299
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ A+++FD + D SW L+ GY G+ I+LFE M +G++ V+
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVT 482
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
IGVL+ACS GLVEKG +FD MQ ++ P + HY CM+ L Y++ R
Sbjct: 483 FIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDL---YSRSGR 531
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ I LA +F R+ ++ SW +I+GYG + A+ F M+ DG++
Sbjct: 320 VDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDD 379
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 380 FTLGSVISSCANLASLEEGAQF 401
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R I+ A +F + +DS +W T++ G G A+++F MR +GV +
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283
Query: 71 VLTACSLGGLVEKGKK 86
+LTAC E+GK+
Sbjct: 284 ILTACGALAASEEGKQ 299
>gi|357130868|ref|XP_003567066.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Brachypodium distachyon]
Length = 433
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR DLA ++F+R+P++D +SW T+I G GE A+ F+ M+ +GV
Sbjct: 231 IDMYAKCGRTDLAGRVFERMPLRDVSSWTTMITGLATHGEEQRALKKFDEMKSEGVPPNR 290
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK--PTETHYACMVYLL 110
V+ + VL+AC+ GLV+ G +M+ +K PT HY C+V LL
Sbjct: 291 VTMLAVLSACAHRGLVDTGMGLLKQMEDGEIKVAPTVEHYGCLVDLL 337
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G +D A ++FD P + SW +I G GE + LF MR GV ++
Sbjct: 131 YSKAGDLDAARRVFDENPHRGLGSWNAIISGLSQAGESKEPLALFVKMRRCGVVPDDLTM 190
Query: 69 IGVLTA-CSLG--GLVEKGKK 86
+ ++++ C++G GLVE+ K
Sbjct: 191 VSLVSSCCAVGDIGLVEQLHK 211
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A + F+++P K+ SW ++I GYG G D A+ LF M++ +E
Sbjct: 322 IDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQDCCIEPNY 381
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G L+AC GLV KG++ F+ M+ ++KP HYACMV LL
Sbjct: 382 VTFLGALSACGHAGLVSKGREIFESMEREYSLKPGMEHYACMVDLL 427
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINL-----FEAMREDG 60
L Y + G + A ++FD LP + +++ LI GY LG + ++NL E R DG
Sbjct: 84 LILYLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDG 143
Query: 61 VEYYPV-----SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
Y + S V +C+LG +V ++ V+P + Y +V +K
Sbjct: 144 FTYSMILKASTSGDNVTLSCNLGSVVH------GQILKSEVEPDDVLYTALVDSYVK 194
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++GR+ A K+FD + K+ ++I GY G ++ A +FE E V +
Sbjct: 189 VDSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFN 248
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
G + EK + + EMQ +P + +A ++
Sbjct: 249 AMIEGYSKSVQ---TAEKALEVYVEMQRYGFRPNLSTFASVI 287
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+IDL+ ++FD++P +D SW T+I GYG+ G A LF M+ G
Sbjct: 450 IDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDD 509
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ I ++ ACS GLV +GK +FD M + + P HY CMV LL +
Sbjct: 510 VTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 557
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ L+ + G++ LA ++FDR+P D+ ++ LI Y LG AI+L+ +M V
Sbjct: 38 QQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVA 97
Query: 63 YYPVSHIGVLTACS 76
+ VL ACS
Sbjct: 98 PNKYTFPFVLKACS 111
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + ++ A ++F +PV++ +W LI G+ + + A NLF+ M +G+ +
Sbjct: 247 LDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLS 306
Query: 66 VSHIG-VLTACS 76
+ + L C+
Sbjct: 307 ATSVASALRVCA 318
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I+ A FD + VKD+ S+ L+ G G+ + A +F+ M+ +E
Sbjct: 349 LSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDI 408
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ GK
Sbjct: 409 ATMVSLIPACSHLAALQHGK 428
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+D Y R R A +F ++P++D +W ++ GY G AI M++ G
Sbjct: 142 IDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG 196
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+IDL+ ++FD++P +D SW T+I GYG+ G A LF M+ G
Sbjct: 450 IDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDD 509
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ I ++ ACS GLV +GK +FD M + + P HY CMV LL +
Sbjct: 510 VTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLAR 557
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ L+ + G++ LA ++FDR+P D+ ++ LI Y LG AI+L+ +M V
Sbjct: 38 QQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVA 97
Query: 63 YYPVSHIGVLTACS 76
+ VL ACS
Sbjct: 98 PNKYTFPFVLKACS 111
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + ++ A ++F +PV++ +W LI G+ + + A NLF+ M +G+ +
Sbjct: 247 LDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLS 306
Query: 66 VSHIG-VLTACS 76
+ + L C+
Sbjct: 307 ATSVASALRVCA 318
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I+ A FD + VKD+ S+ L+ G G+ + A +F+ M+ +E
Sbjct: 349 LSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDI 408
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ GK
Sbjct: 409 ATMVSLIPACSHLAALQHGK 428
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+D Y R R A +F ++P++D +W ++ GY G AI M++ G
Sbjct: 142 IDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG 196
>gi|147779768|emb|CAN71727.1| hypothetical protein VITISV_003014 [Vitis vinifera]
Length = 1167
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 65/110 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + R G I +A KIF+ L KD+ SW T+I GYG+ G+ + A+ L MR G++
Sbjct: 959 IDLFARCGNISIAKKIFEGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDG 1018
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
+++ VL+ACS GG +++G F+ M V HYACMV LL + Q
Sbjct: 1019 ITYASVLSACSHGGFIDQGWMIFNSMVEEGVPRRMEHYACMVDLLGRTGQ 1068
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L FY+ G++ + K+F ++P++++ SW TLI G G+ A+ L M+++ +E
Sbjct: 659 LAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDL 718
Query: 66 VSHIGVLTAC 75
V+ I ++ C
Sbjct: 719 VTLISIIPIC 728
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY +TGR+ A + D++ D +W LI GY + G + + E G++
Sbjct: 387 VDFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQILEMGLKPNV 446
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ C+ ++ GK
Sbjct: 447 STFASIIPLCTRMKCLDIGKS 467
>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial; Flags: Precursor
gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 775
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 67/107 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ + ++FD KD+ W +I GYGM G+++ AI LF+ M E V+
Sbjct: 575 IDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTG 634
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ + +L+AC+ GLVE+GKK F +M +VKP HY+C+V LL +
Sbjct: 635 PTFLALLSACTHAGLVEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSR 681
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L Y + + +A K+F R+ + + +W T++ GYG + I LF ++ G+E
Sbjct: 373 LSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEID 432
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
S V+++CS G V GK
Sbjct: 433 SASATSVISSCSHIGAVLLGKSL 455
>gi|115463861|ref|NP_001055530.1| Os05g0409800 [Oryza sativa Japonica Group]
gi|50878475|gb|AAT85248.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113579081|dbj|BAF17444.1| Os05g0409800 [Oryza sativa Japonica Group]
gi|222631576|gb|EEE63708.1| hypothetical protein OsJ_18526 [Oryza sativa Japonica Group]
Length = 401
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/101 (39%), Positives = 60/101 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A ++F +P +D SW LILG+G+ G DVA+ LF+ M +GV
Sbjct: 189 VDMYVKCGEFAFAERVFAGMPRRDVISWSALILGHGLNGRSDVALRLFDEMAAEGVRPNS 248
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106
V+ +G L+AC+ G+V+K F+ M+ VKP HY+CM
Sbjct: 249 VTFLGALSACAHSGMVDKAYAIFEGMKRHGVKPELKHYSCM 289
>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
Length = 1008
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 65/110 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + R G I +A KIF+ L KD+ SW T+I GYG+ G+ + A+ L MR G++
Sbjct: 800 IDLFARCGNISIAKKIFEGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDG 859
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
+++ VL+ACS GG +++G F+ M V HYACMV LL + Q
Sbjct: 860 ITYASVLSACSHGGFIDQGWMIFNSMVEEGVPRRMEHYACMVDLLGRTGQ 909
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ++ A+ IF ++P ++ SW ++I GYG G + +++ F M+ +G +
Sbjct: 399 LSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDA 458
Query: 66 VSHIGVLTACS 76
+S + +L+ACS
Sbjct: 459 ISIVNILSACS 469
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L FY+ G++ + K+F ++P++++ SW TLI G G+ A+ L M+++ +E
Sbjct: 500 LAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDL 559
Query: 66 VSHIGVLTAC 75
V+ I ++ C
Sbjct: 560 VTLISIIPIC 569
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY +TGR+ A + D++ D +W LI GY + G + + E G++
Sbjct: 197 VDFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNV 256
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ C+ ++ GK
Sbjct: 257 STFASIIPLCTRMKCLDIGKS 277
>gi|357125448|ref|XP_003564406.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 440
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+D A+++F R+P + W +I G M D AI LFE MR GV+
Sbjct: 223 IDCYGKAGRLDYASRVFARVPSRSVMHWTAMICGMAMHLRSDEAIRLFEKMRWQGVQPNK 282
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
++ VL+AC GLV++G+KFF M + +++PT HY CMV + K Q
Sbjct: 283 MTFTAVLSACGHAGLVDQGRKFFKLMFEKYDLEPTIHHYGCMVDIFAKAGQ 333
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM---REDGVEYYPVS 67
R+ + A FD +P KD SW T++ Y G L + F AM + +Y VS
Sbjct: 125 RSSDLASARLFFDGIPDKDVVSWSTMLGCYFSHGRLADGLAFFRAMTFTTQLAADY--VS 182
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102
+ VLT C+ GL+ + R P H
Sbjct: 183 LVTVLTGCASAGLLPPFCRSVHGYAVRRCVPANRH 217
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ID A + F+ +PVK+S +W LI G G A+ LF +MR+ +E
Sbjct: 363 VDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTD 422
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL ACS LVE+G++ FD M Q +KP HY C+V LL
Sbjct: 423 VTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLL 468
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD + +D +W +I GY + A+ LF M+ VE
Sbjct: 262 IDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPND 321
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL+AC++ G +E GK
Sbjct: 322 VTMVSVLSACAVLGALETGK 341
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID A ++F+ +PVK+ +W +I G + G+ A+N+F M + G++
Sbjct: 352 VDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNE 411
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ +GVL ACS GG VE+GK+ F+ M+ A ++KP HY CMV +L
Sbjct: 412 VTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDML 457
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+F+ LP +D W L+ GY + A+ F M D V
Sbjct: 251 MDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPND 310
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ VL+AC+ G +++G+
Sbjct: 311 FTLSSVLSACAQMGALDQGR 330
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ +G ++ A ++FD P +D+ +W LI GY A+ F MR V+
Sbjct: 152 FANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTV 211
Query: 69 IGVLTACSLGGLVEKGK 85
+L A +L G + G+
Sbjct: 212 ASILRAAALVGDADFGR 228
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++F+ +P K+ SW ++I + M G D AI LF M+E +E
Sbjct: 396 IDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYN 114
V+ IGVL AC GLVE+G+K F M + PT HY CMV L + N
Sbjct: 456 VTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRAN 505
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y RI A +FD++ D+ +W +I GY G D A+ LFE MR ++ V
Sbjct: 166 YASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVIL 225
Query: 69 IGVLTACSLGGLVEKGKKFFD 89
VL+AC G + G+ +
Sbjct: 226 CTVLSACGHAGNLSYGRTIHE 246
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A IFD++ +D W +I GY + A+ LF+ M +
Sbjct: 295 LSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQ 354
Query: 66 VSHIGVLTACS-LGGLVE 82
++ + V++ACS +G L +
Sbjct: 355 ITMLSVISACSHVGALAQ 372
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y G +DLA KI+D L K ++ GY LG + A +F+ M +E
Sbjct: 264 INMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQM----IERDL 319
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
V +++ + ++ K FDEM + P +
Sbjct: 320 VCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQ 354
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT+ G++D+A ++FD + +D SW T++ G+G+ G A++LF +M+E GV
Sbjct: 451 MDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDE 510
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR--NVKPTETHYACMVYLLIK 112
V+ + +L+ACS GLV++GK+ F+ M NV P HY CM LL +
Sbjct: 511 VTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLAR 559
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
+DFY + G +++A K+FD +P +D +W +I G+ + L I LF MR DG+
Sbjct: 145 VDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPN 204
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
+ +G+ A G + +GK
Sbjct: 205 LSTIVGMFPALGRAGALREGK 225
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY + G + A + F + +KD S+ +LI G + + + LF MR G+
Sbjct: 350 ISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDI 409
Query: 66 VSHIGVLTACS 76
+ +GVLTACS
Sbjct: 410 TTLLGVLTACS 420
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G ++L +++F+R+ +D SW +LI YG+ G AI +F+ M + G+ P+S
Sbjct: 331 YARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISF 390
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
+ VL ACS GLVE+GK F+ M + + P+ HYACMV LL + N+
Sbjct: 391 VSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANR 438
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R G + A+++FD++PVK+ SW +I Y G+ A+ LF M + + P
Sbjct: 225 LDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLP 284
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ +E+GK
Sbjct: 285 NSVTMVSVLQACAALAALEQGK 306
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G ID A +FD+LP +D+ SW TLI G+ M G + A+ F M + G+
Sbjct: 287 VDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPRE 346
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ VL+ACS GGLVE+G + F+ M+ ++P HY CMV LL
Sbjct: 347 ITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLL 392
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++G + A K+FD++P K+ +W +I GY D AI L+ ++ +GV
Sbjct: 189 YIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVM 248
Query: 69 IGVLTACSLGGLVEKGKKFFD 89
+ V+ +C+ G +E G++ D
Sbjct: 249 VSVIASCAHLGALELGERAHD 269
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+ G I A+ +F R+ D SW +++ GY G++ A LF+ M E + + V
Sbjct: 158 YSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSV-- 215
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+++ + +K + + +Q+ V ET
Sbjct: 216 --MISGYAKNSFFDKAIELYFLLQSEGVHANET 246
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA+ +FD + KD SW +I GYGM G AI LF MR+ G+E
Sbjct: 390 VDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADE 449
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S + +L ACS GLV++G +FF+ M+ ++PT HYAC+V +L +
Sbjct: 450 ISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 497
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G +D A +F + + S+ ++I GY G A+ LFE M E+G+
Sbjct: 187 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 246
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ VL C+ L+++GK+ + ++ ++
Sbjct: 247 YTVTAVLNCCARYRLLDEGKRVHEWIKENDL 277
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY + R+D A K+FD + +D SW ++I GY G + +++F M G+E +
Sbjct: 88 FYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 147
Query: 68 HIGVLTACSLGGLVEKGK 85
+ V C+ L+ G+
Sbjct: 148 IVSVFAGCADSRLISLGR 165
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F + VKD SW T+I GY + A++LF + E+ + P
Sbjct: 288 MDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK-RFSP 346
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
VL AC+ +KG++
Sbjct: 347 DERTVACVLPACASLSAFDKGRE 369
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R G IDLA ++FDR+P + SW ++I+G+ + G D A++ F +M+E+G +
Sbjct: 269 IDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDG 328
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYL 109
VS+ G L ACS GL+ +G + F+ M+ R + P HY C+V L
Sbjct: 329 VSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDL 373
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G+ + A ++FD LPVK++ SW LI G+ + A+ F M+ GV
Sbjct: 168 IDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDY 227
Query: 66 VSHIGVLTACS-LGGL 80
V+ I V+ AC+ LG L
Sbjct: 228 VTVIAVIAACANLGTL 243
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A FD++ V++ SW T+I GY G+ + A+ +F+ + P
Sbjct: 137 IDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGL--------P 188
Query: 66 VSHIGVLTACSLGGLV-----EKGKKFFDEMQARNVKP 98
V + TA +GG V E+ + F EMQ V P
Sbjct: 189 VKNAISWTAL-IGGFVKKDYHEEALECFREMQLSGVAP 225
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 67/107 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A +IFD + VKDS +W ++I+G + G + A+N+F M E +
Sbjct: 235 INMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNH 294
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ IG+L+AC+ GGLV GK+++ M ++P+ HY CMV LL +
Sbjct: 295 VTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCR 341
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY++ I +A K+FD + ++ W ++ GY LG ++ A+ +F M+ G+E
Sbjct: 134 VNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDE 193
Query: 66 VSHIGVLTACSLGGLVEKGK 85
VS +GVL+AC++ G ++ GK
Sbjct: 194 VSLVGVLSACAMVGALDIGK 213
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA+ +FD + KD SW +I GYGM G AI LF MR+ G+E
Sbjct: 541 VDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADE 600
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S + +L ACS GLV++G +FF+ M+ ++PT HYAC+V +L +
Sbjct: 601 ISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G +D A +F + + S+ ++I GY G A+ LFE M E+G+
Sbjct: 338 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 397
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL C+ L+++GK+
Sbjct: 398 YTVTAVLNCCARYRLLDEGKR 418
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY + R+D A K+FD + +D SW ++I GY G + +++F M G+E +
Sbjct: 239 FYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 298
Query: 68 HIGVLTACSLGGLVEKGK 85
+ V C+ L+ G+
Sbjct: 299 IVSVFAGCADSRLISLGR 316
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F + VKD SW T+I GY + A++LF + E+ + P
Sbjct: 439 MDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK-RFSP 497
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
VL AC+ +KG++
Sbjct: 498 DERTVACVLPACASLSAFDKGRE 520
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I ++K+F+ L K +ASW +I+GYGM G AI LFE M+ G
Sbjct: 623 IDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDD 682
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ +GVLTAC+ GL+ +G ++ D+M++ +KP HYAC++ +L + Q
Sbjct: 683 LTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQ 733
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + +FD + SW T+I G+ G + A+ LF M G++
Sbjct: 522 LSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCG 581
Query: 66 VSHIGVLTACSL 77
+S + V ACSL
Sbjct: 582 ISMMTVFGACSL 593
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ + K+F+ + KD+ SW ++ GY + G D AI LF M+E V+
Sbjct: 675 IDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 734
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS + VL+AC GLVE+G+K F M + ++KP HYACMV LL
Sbjct: 735 VSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLL 780
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D+A ++FD++ +D SW T++ GY G + LF+ M+ V
Sbjct: 270 IDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINK 329
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
VS + A + +EKGK+
Sbjct: 330 VSAVSAFLAAAETIDLEKGKE 350
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G A F+R+ +D +W +LI GY +G+ AI++F +R +
Sbjct: 472 VSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDA 531
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ +GV+ AC+L +++G
Sbjct: 532 GTMVGVVPACALLNDLDQG 550
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A ++FD++P +D +W +I G + A++ F +M+ GVE
Sbjct: 171 VDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSS 230
Query: 66 VSHIGVLTA-CSLGGL 80
VS + + C L +
Sbjct: 231 VSLLNLFPGICKLSNI 246
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+ + DLA +FD P W ++I Y + + A+ ++ M E G+E
Sbjct: 70 INLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDK 129
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ VL AC+ +++G F E+ R ++
Sbjct: 130 YTFTFVLKACTGALNLQEGVWFHGEIDRRGLE 161
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
P + Y + G + A ++F L +D +W +I G + A++LF+ M+ ++
Sbjct: 369 PLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKP 428
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
V+ + +L AC+ L++ GK
Sbjct: 429 NRVTLMSILPACADLSLLKLGKS 451
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G + A +F++ KD +W +I Y G AI+ F MR +
Sbjct: 573 IDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPN 632
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ + VL A + +G F
Sbjct: 633 SVTFVSVLPAAAYLAAFREGMAF 655
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 5 RLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
RLD + + G + A +FD + ++ SW T+I+GY M G+ A+ LF M+ +G+
Sbjct: 251 RLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPN 310
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM---QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GLV +GK++F M +N++P + HYACMV LL
Sbjct: 311 YVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLL 359
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A +F+ + VKD +W I G +A+ F M D V++ +
Sbjct: 154 YMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTV 213
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +L+AC G ++ G++ +D + ++
Sbjct: 214 VSMLSACGQLGSLDIGEEIYDRARKEEIE 242
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +++A IF+ LP +D +W +++G + G + A+N+F M + V
Sbjct: 305 IDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDE 364
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
V+++GVL+AC+ G+V++GKKFF M AR+ ++P HY CMV LL K
Sbjct: 365 VTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGK 412
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ TG++D A K F ++P +D SW +I GY L A+ LF M+ ++ +
Sbjct: 207 FVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTM 266
Query: 69 IGVLTACSLGGLVEKG---KKFFDEMQARN 95
+ VLTAC+ G +E G + + D+ + +N
Sbjct: 267 VSVLTACAQLGALELGEWIRTYIDKNKVKN 296
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 5 RLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
RLD + + G + A +F+ + ++ SW T+I+GY M G+ A+ LF M+ +G+
Sbjct: 251 RLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPN 310
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM---QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GLV +GK++F M +N++P + HYACMV LL
Sbjct: 311 YVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLL 359
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A +F+ + VKD +W + G +A+ F M D V++ +
Sbjct: 154 YMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTV 213
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ +L+AC G +E G++ +D + +
Sbjct: 214 VSMLSACGQLGSLEIGEEIYDRARKEEI 241
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A K FDR+ K+ SW +I GYGM G A+ LF AM + GV
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GL +G ++F+ M+ R V+P HY CMV LL
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLL 434
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM------REDGVE 62
Y+ G+++ A K+FD +P ++ SW ++I GY + G A++LF+ + +D +
Sbjct: 121 YSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF 180
Query: 63 YYPVSHIGVLTACS---LGGLVEKGKKF 87
+ + V++ACS GL E F
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSF 208
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A K FDR+ K+ SW +I GYGM G A+ LF AM + GV
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GL +G ++F+ M+ R V+P HY CMV LL
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLL 434
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM------REDGVE 62
Y+ G+++ A K+FD +P +D SW ++I GY + G A++LF+ + +D +
Sbjct: 121 YSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF 180
Query: 63 YYPVSHIGVLTACS---LGGLVEKGKKF 87
+ + V++ACS GL E F
Sbjct: 181 LDSMGLVSVISACSRVPAKGLTESIHSF 208
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +D A K+F +LP +D SW ++I YG G+ A+ LF+ M++ V
Sbjct: 451 LDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADS 510
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL+ACS GLV++G +F+EM + ++KP HY+C++ LL
Sbjct: 511 VTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLL 556
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G + A IF + + SW +I G+ M+G A+++++ M+E V+
Sbjct: 350 IDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDA 409
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ L+ACS ++KG++
Sbjct: 410 LTFSSTLSACSQLAALDKGREL 431
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + + A K+FD P +D W +I Y G+ ++A+ F+ M+E G E
Sbjct: 148 MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNS 207
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
V+ V+++C+ +E+GK+ E+ R +
Sbjct: 208 VTFTVVVSSCTRLLNLERGKEVHRELIERRI 238
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +++A ++F+++P K++ +W +I GY + G+ I L M ++G +
Sbjct: 249 VDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTL 308
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ ++ A S + GK
Sbjct: 309 MTLTSIIYASSRSVQLRHGK 328
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +IFD + +D SW TLI+GY G + A+ LF+ M+ G+E
Sbjct: 515 IDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNH 574
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
V+ +GVLTACS GLVE+G K + MQ + + PT+ H +C+V LL +
Sbjct: 575 VTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLAR 622
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
D Y R G ++ A ++FD++ D+ASW +I G G D A+++F MR G
Sbjct: 313 DMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSG 366
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 51/110 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A ++FD +P ++ S+ ++I GY G+ AI L+ M ++ +
Sbjct: 109 LSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQ 168
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
+ ++ AC+ V GK+ ++ ++ + +++NQ
Sbjct: 169 FAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQ 218
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R ++ A+++F +P+KD SW ++I G+ LG A++ + M GV ++P +
Sbjct: 213 YVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV-FHPNEY 271
Query: 69 I--GVLTACS 76
I L ACS
Sbjct: 272 IFGSSLKACS 281
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY++ GR++ A +F+R+ K+ SW LI GYG G+ A+ +FE M ++GV
Sbjct: 362 VDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTH 421
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ + VL+ACS GL ++G + F M+ VKP HYACM+ LL
Sbjct: 422 VTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELL 467
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG--VEY 63
+D Y++ G I+ A+ +FD++P K + W ++I Y + G + A++L+ MR+ G V++
Sbjct: 261 IDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDH 320
Query: 64 YPVS 67
+ +S
Sbjct: 321 FTIS 324
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L + + G + A K+FD +P KD ASW+T++ G G A LF M ++ +
Sbjct: 160 LFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRS 219
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ ++ A + GLV+ GK+ R V
Sbjct: 220 RTFATMIRASAGLGLVQVGKQIHSCALKRGV 250
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A +IFD++P K+ SW +I + M G+ A+ F M ++ +E
Sbjct: 397 IEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNG 456
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYN 114
++ +GVL ACS GLVE+G+K F M N+ P HY CMV L + N
Sbjct: 457 ITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRAN 506
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G+I+ A +F+++ KD W +I GY A+NLF M+ G++ V+
Sbjct: 299 YSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTM 358
Query: 69 IGVLTACSLGGLVEKGK 85
+ V+TAC+ G +++ K
Sbjct: 359 LSVITACAHLGALDQAK 375
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GRI A +FD++ +D +W +I GY G + A+ LFE M+ VE +
Sbjct: 167 YAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMML 226
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
VL+AC G + GK D + N+
Sbjct: 227 STVLSACGRAGNLSYGKMIHDFIMENNI 254
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 1 MIEPRLD-----FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEA 55
+++P L Y G +DLA +F+++ K+ + ++ GY LG+++ A ++F
Sbjct: 255 VVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQ 314
Query: 56 MREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
M V+ V +++ + ++ F+EMQ+ +KP +
Sbjct: 315 M----VKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQV 356
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R G I LA ++F+++P + SW ++I+G+ + G + A+ F MR++G
Sbjct: 266 IDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDG 325
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQKAR 118
VS G LTACS GLV++G +FFD M+ R + P HY C+V L Y++ R
Sbjct: 326 VSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDL---YSRAGR 376
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
+D Y++ G++DLA +FD + V++S SW T+I G GE+ AI LF+ M E D + +
Sbjct: 134 VDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISW- 192
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
S IG G E+ ++F EMQ V+P
Sbjct: 193 -TSMIGGFVK---KGCFEQALEWFREMQLAGVEP 222
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D R G + A +FD++ +D+ SW ++I G+ G + A+ F M+ GVE
Sbjct: 165 IDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDY 224
Query: 66 VSHIGVLTACS-LGGL 80
V+ I VL AC+ LG L
Sbjct: 225 VTIISVLAACANLGAL 240
>gi|357119036|ref|XP_003561252.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71490-like [Brachypodium distachyon]
Length = 692
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++G + +A +FD + +D S+ +I GYGM G+ +A+ LF+ M + G++
Sbjct: 441 IDMYSKSGXLSVAQNVFDTMDDRDMISYTXMIAGYGMQGKGTIALRLFDQMIDSGIKPDH 500
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYL 109
+S + VL+ACS GLV +G+K FD+M + +KP HY+CMV L
Sbjct: 501 ISMVTVLSACSHSGLVTEGEKLFDKMTSSYGIKPQMEHYSCMVDL 545
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y ++G + A K+F+ + KD SW ++I Y +G+ A+ LFE MR + E
Sbjct: 204 VSMYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQAVELFERMRAEEAEVNS 263
Query: 66 VS 67
V+
Sbjct: 264 VT 265
>gi|224089599|ref|XP_002308772.1| predicted protein [Populus trichocarpa]
gi|222854748|gb|EEE92295.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++G I+ A +F +LP K+S ++ T+IL YG G + A++LF +M++ G+E
Sbjct: 72 VDMYSKSGSINYAESVFTKLPDKNSVTYTTMILAYGQHGMGERALSLFHSMKKSGIEPDA 131
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ I VL+ACS GLV++G + F+ M+ ++P+ HY C+ +L
Sbjct: 132 ITFIAVLSACSHSGLVDEGLQIFESMEKDFKIQPSTPHYCCVTDML 177
>gi|357513069|ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520845|gb|AET01299.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 355
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A K+FD + ++ +W T+I GYGM G + +F M E G
Sbjct: 151 INMYAKCGELEFARKVFDGMCERNEVTWSTMIAGYGMHGRFEEVFEMFNRMVEVGERMDN 210
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS VLTACS GG VEKG++ F+ M+ R VKP HY CMV +L
Sbjct: 211 VSFTVVLTACSHGGFVEKGREIFEMMKVRFGVKPDVRHYTCMVDML 256
>gi|212275680|ref|NP_001130323.1| uncharacterized protein LOC100191417 [Zea mays]
gi|194688846|gb|ACF78507.1| unknown [Zea mays]
gi|413945339|gb|AFW77988.1| hypothetical protein ZEAMMB73_191992 [Zea mays]
Length = 401
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A ++F +P +D SW LILG+G+ G DVA+ LF+ M +G+
Sbjct: 187 VDMYVKCGDFAFAQRVFVGMPRRDVISWSALILGHGLNGRSDVALGLFDRMSAEGIRPNS 246
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ +G L+AC+ G+V+KG F M+ ++P HY+CM +L
Sbjct: 247 VTFLGALSACAHSGMVDKGYAIFKGMKLSGIEPELKHYSCMADML 291
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A ++FD + +D+ W +++ Y GE D A+ F +M G+E V I +L AC
Sbjct: 98 ARRLFDGMRERDAVLWTSMLSAYAQGGEPDAAMRFFGSMVAAGMELDAVVMISLLLACGQ 157
Query: 78 GGLVEKGK 85
G G+
Sbjct: 158 LGWRRHGR 165
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I + Y R G+++ IFDR+ KD W +LI YG+ G AI +FE M + G
Sbjct: 314 VISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHG 373
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
+S I VL ACS GLVE+GKK F+ M + ++P+ HYACMV LL + N+
Sbjct: 374 FSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANR 429
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G + A+ +FD +PVK+ SW +I Y G+ A+ LF M + + P
Sbjct: 216 MDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVP 275
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ +E+GK
Sbjct: 276 NSVTMVSVLQACAAFAALEQGK 297
>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
Length = 569
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G++ A K+FD + +D SW +++ GYGM G D A+ LF M VE
Sbjct: 328 INMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDG 387
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+AC G V +G++ FD M +A + P+ HY CMVYLL
Sbjct: 388 VTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLL 433
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y + G +D A K F K++ +W TLI Y D A+++ M + G P V
Sbjct: 193 YGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVV 252
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
S V+ + G ++ + F MQ + + P
Sbjct: 253 SWSAVIGGFASSGDTDRALELFRRMQQQWLSP 284
>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
Length = 906
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G++ A K+FD + +D SW +++ GYGM G D A+ LF M VE
Sbjct: 665 INMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDG 724
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+AC G V +G++ FD M +A + P+ HY CMVYLL
Sbjct: 725 VTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLL 770
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y + G +D A K F K++ +W TLI Y D A+++ M + G P V
Sbjct: 530 YGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVV 589
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
S V+ + G ++ + F MQ + + P
Sbjct: 590 SWSAVIGGFASSGDTDRALELFRRMQQQWLSP 621
>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
Length = 569
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G++ A K+FD + +D SW +++ GYGM G D A+ LF M VE
Sbjct: 328 INMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDG 387
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+AC G V +G++ FD M +A + P+ HY CMVYLL
Sbjct: 388 VTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLL 433
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y + G +D A K F K++ +W TLI Y G D A+++ M + G P V
Sbjct: 193 YGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAAGLCDEALDVLAQMEQIGGTVAPNVV 252
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
S V+ + G ++ + F MQ + + P
Sbjct: 253 SWSAVIGGFASSGDTDRALELFRRMQQQWLSP 284
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A ++FDR KD W +I+GYG+ G+ AINL+ M++ GV
Sbjct: 398 IDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPND 457
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ IG+LTAC+ GLV++G + F M+ + P HY+C+V LL
Sbjct: 458 VTFIGLLTACNHSGLVKEGWELFHCMKDFEIVPRNEHYSCVVDLL 502
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 35/124 (28%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I +A +FD L + SW ++I GY G+ A+ +F MR +GV+ ++
Sbjct: 198 LYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIA 257
Query: 68 HIGVLTACS-----------------LG------------------GLVEKGKKFFDEMQ 92
+ +L A + +G GLV K FFD+M+
Sbjct: 258 LVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMK 317
Query: 93 ARNV 96
NV
Sbjct: 318 TTNV 321
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY + G + +A FD++ + W +I GY G + A+NLF M ++ V+
Sbjct: 299 FYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVT 358
Query: 68 -HIGVLTACSLGGL 80
VL + +G L
Sbjct: 359 VRSAVLASAQVGSL 372
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+++A K FDR+ K+ SW ++ GYGM G A+++F M GV+
Sbjct: 2268 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 2327
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GLVE+G +F+ M+ + +++P HY CMV L
Sbjct: 2328 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLF 2373
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A ++F+ +P K +W ++I G+ G A+NLF M V+
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
++ IGVL AC V++G +F M Q + P HY CM L + N
Sbjct: 359 ITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNN 409
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G+ ++ K+FD + KD SW ++I Y G A+ +F M R GV Y
Sbjct: 2166 MDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYN 2225
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ VL AC+ G + GK D++
Sbjct: 2226 AVTLSAVLLACAHAGALRAGKCIHDQV 2252
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G A K+F+++ V++ SW T+I G G+L A +F+ + V
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV---- 222
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++ E+ + F MQA N+ P E
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNE 257
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF------EAMRED 59
+D Y++ G++ A +FD +P+++ SW ++I GY + D A+ LF E ED
Sbjct: 2057 IDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVED 2116
Query: 60 G--VEYYPVSHIGVLTACS 76
G V V + VL+ACS
Sbjct: 2117 GNNVPLDSVVMVSVLSACS 2135
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + A +IFD +P K+ SW +I GY + + A+ LF+ M+ + + + + ++
Sbjct: 205 GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLI 264
Query: 73 TACSLGGLVEKGKKFFD 89
AC+ G++ G+ D
Sbjct: 265 KACTEMGILTLGRGIHD 281
>gi|297798028|ref|XP_002866898.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312734|gb|EFH43157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 742
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ + ++FD KD+ W +I GYGM G ++ AI LF+ M E V+
Sbjct: 542 IDMYAKCGHLEKSRELFDAASQKDAVCWNVMISGYGMHGHVESAIALFDQMEESDVKPTG 601
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ + +L+AC+ GLVE GK F +M +VKP HY+C+V LL +
Sbjct: 602 PTFLALLSACTHAGLVEHGKNLFLKMHQYDVKPNLKHYSCLVDLLSR 648
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G + +A ++F + +W +I Y + D AI LF+ M +
Sbjct: 437 VVNSLIDLYGKMGDLTVAWRMFCEADT-NIVTWNAMIASYVYCEQPDKAIALFDRMVSEN 495
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
+ ++ + +L AC+ G +E+G+
Sbjct: 496 FKPSSITLVTLLMACANTGSLERGQ 520
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G +D A +F+++P ++ SW ++I + M GE +++LF M+++ VE
Sbjct: 389 INMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNE 448
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYN 114
V+ +GVL CS GLVE+GKK F M N+ P HY CMV L + N
Sbjct: 449 VTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRAN 498
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y GRI+ A +FD + +D +W T+I Y G LD A LFE M++ V
Sbjct: 156 MDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDE 215
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102
+ +++AC G + + +D + +V+ +TH
Sbjct: 216 MILCNIVSACGRTGNMRYNRAIYDFLIENDVR-MDTH 251
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ GR+D A IFD+ +KD W T+I Y A+ +FE M G++ V+
Sbjct: 291 YSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTM 350
Query: 69 IGVLTACSLGGLVEKGK 85
+ V++AC G ++K K
Sbjct: 351 LSVISACVNLGTLDKAK 367
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G D AN +F+ + KD SW T+I GY G A+ LFE+M++ GV+
Sbjct: 433 LGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDE 492
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS GL+++G ++F M + NVKPT HY CM+ LL
Sbjct: 493 ITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLL 538
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + + A ++FDR+PV+D SW T+I GY +G+L A LF P+
Sbjct: 211 YVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNES--------PIRD 262
Query: 69 IGVLTACSLG----GLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
+ TA G G+V++ +K+FDEM +N E Y M+ ++Y +
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKN----EISYNAMLAGYVQYKK 309
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I A K+FD +P +D SW +I GY G + A+N+F M+ DG +
Sbjct: 335 YGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTF 394
Query: 69 IGVLTACSLGGLVEKGKK 86
L+ C+ +E GK+
Sbjct: 395 SCALSTCADIAALELGKQ 412
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R + LA +FD++P +D SW ++ GY L A LF+ M + V VS
Sbjct: 87 YLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDV----VSW 142
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
+L+ + G V++ ++ F++M RN
Sbjct: 143 NAMLSGYAQNGFVDEAREVFNKMPHRN 169
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +D A K FD +PVK+ S+ ++ GY ++ +A LFEAM + +
Sbjct: 273 YVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNT-- 330
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
++T G + + +K FD M R+
Sbjct: 331 --MITGYGQNGGIAQARKLFDMMPQRD 355
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R R+ A+K+FD +P KD SW ++ GY G +D A +F M
Sbjct: 115 LTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRN----S 170
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+S G+L A G +++ ++ F+
Sbjct: 171 ISWNGLLAAYVHNGRLKEARRLFE 194
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +D A ++F+++P ++S SW L+ Y G L A LFE+ +
Sbjct: 146 LSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWEL---- 201
Query: 66 VSHIGVLTACSLGGLVEK-----GKKFFDEMQARNVKPTET 101
+ C +GG V++ ++ FD M R+V T
Sbjct: 202 -----ISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNT 237
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G D A ++F+ +P + S S+ +I GY + +A +LF+ M E + + V
Sbjct: 56 HMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVML 115
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
G + LG + K FD M ++V
Sbjct: 116 TGYVRNRRLG----EAHKLFDLMPKKDV 139
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ A +F+RLP ++ +W +I G+ + G+ AI+ F MR+ GV
Sbjct: 316 IDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD 375
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V++I +LTACS GGLVE+G+++F +M ++P HY CMV LL
Sbjct: 376 VAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLL 421
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELD--VAINLF-EAMREDGVEYYPVSHIGV 71
+D A+KIF+++P ++ SW T+I G+ E +AI LF E M ++ VE + V
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 72 LTACSLGGLVEKGKK 86
L AC+ G +++GK+
Sbjct: 135 LKACAKTGKIQEGKQ 149
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G A +FD++ + SW T+I GY + G A+ +F M++ +
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL A S G +E G+
Sbjct: 275 VTLVSVLPAISRLGSLELGE 294
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 33 WITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQ 92
W +I GY LG+ A LF+ MR+ V VS +++ SL G + + F EM+
Sbjct: 211 WNVMIDGYMRLGDCKAARMLFDKMRQRSV----VSWNTMISGYSLNGFFKDAVEVFREMK 266
Query: 93 ARNVKPTETHYACMVYLL 110
+++P +Y +V +L
Sbjct: 267 KGDIRP---NYVTLVSVL 281
>gi|356564808|ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Glycine max]
Length = 501
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G ID A IF+ + +D +W T+I GY G AINLFE M + GV
Sbjct: 250 ISMYSKCGAIDDALHIFENMVSRDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGVNPDA 309
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+++GVL++C GGLV++G+ +F+ M V+P HY+C+V LL
Sbjct: 310 VTYLGVLSSCRHGGLVKEGQVYFNSMVEHGVQPGLDHYSCIVDLL 354
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R + A ++F+ +PV++ SW +I G+ +D+ + LF+ MR +
Sbjct: 149 ISLYSRCAFLGDACRVFEEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGSDLRPNY 208
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ +L+AC G + G+
Sbjct: 209 FTYTSLLSACMGSGALGHGR 228
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G I+ A +IF L KD+A+W ++I G M G+ A+ LF M++ VE P
Sbjct: 131 IEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQ--VEAIP 188
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQ 115
V+ IGVL+ACS GGLVE+G++FF+ M + N++P HY C++ LL + Q
Sbjct: 189 DEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQ 241
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G +D A ++F+R PVKD W +I GY D A+ LF+ M+ V+
Sbjct: 33 YVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVKPDKFVL 92
Query: 69 IGVLTACSLGGLVEKG 84
+ +LT C+ G +E+G
Sbjct: 93 VALLTGCAQMGALEQG 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G + +A KIFD +P K+ W +++ GY GELD A LF E PV
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELF--------ERSPVK 52
Query: 68 HIGVLTACSLGGLVE-----KGKKFFDEMQARNVKP 98
+ + TA + G V+ + F EMQ + VKP
Sbjct: 53 DVVLWTA-MINGYVQFNHFDEAVALFQEMQIQRVKP 87
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++FDRL K+ SW ++ GYGM G AI LFE MR G+
Sbjct: 540 IDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDA 599
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
S +L ACS GL ++G +FFD M+ + ++P HY CMV LLI
Sbjct: 600 ASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLIN 647
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY ++ R A +FD +P +D SW ++I G G D AI LF M +G E
Sbjct: 238 MAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDS 297
Query: 66 VSHIGVLTACS 76
+ + VL AC+
Sbjct: 298 ATLLSVLPACA 308
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 8 FYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
Y + G ++ A ++FD +P V D W L+ GY G+L + LF M GV
Sbjct: 138 MYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAY 197
Query: 67 SHIGVLTACSLGGLVEKGK 85
+ VL + G +E G+
Sbjct: 198 TISCVLKCIAGLGSIEDGE 216
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
++ Y + G ++ A IFD + KD SW TLI GY + A +LF M
Sbjct: 440 MEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEM 490
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ A+++FD + D SW L+ GY G I+LFE M GV+ V+
Sbjct: 417 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVT 476
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYL 109
IGVL+ACS G VEKG+ +F MQ + P + HY CM+ L
Sbjct: 477 FIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDL 519
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ I LA +F R+ K+ SW LI+GYG G + A+ +F M+ DG++
Sbjct: 314 VDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 374 YTLGSVISSCANLASLEEGAQF 395
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R ++ A ++F+ + +DS +W T++ G+ G A+ +F MR G+ +
Sbjct: 218 RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGS 277
Query: 71 VLTACSLGGLVEKGKK 86
+LTAC +E+GK+
Sbjct: 278 ILTACGALSALEQGKQ 293
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+++A K FDR+ K+ SW ++ GYGM G A+++F M GV+
Sbjct: 1395 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 1454
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GLVE+G +F+ M+ + +++P HY CMV L
Sbjct: 1455 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLF 1500
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A ++F+ +P K +W ++I G+ G A+NLF M V+
Sbjct: 299 IDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDA 358
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
++ IGVL AC V++G +F M Q + P HY CM L + N
Sbjct: 359 ITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNN 409
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G+ ++ K+FD + KD SW ++I Y G A+ +F M R GV Y
Sbjct: 1293 MDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYN 1352
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ VL AC+ G + GK D++
Sbjct: 1353 AVTLSAVLLACAHAGALRAGKCIHDQV 1379
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G A K+F+++ V++ SW T+I G G+L A +F+ + V
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNV---- 222
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++ E+ + F MQA N+ P E
Sbjct: 223 VSWTAMINGYIRNQQPEEALELFKRMQAENIFPNE 257
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF------EAMRED 59
+D Y++ G++ A +FD +P+++ SW ++I GY + D A+ LF E ED
Sbjct: 1184 IDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVED 1243
Query: 60 G--VEYYPVSHIGVLTACS 76
G V V + VL+ACS
Sbjct: 1244 GNNVPLDSVVMVSVLSACS 1262
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + A +IFD +P K+ SW +I GY + + A+ LF+ M+ + + + + ++
Sbjct: 205 GDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLI 264
Query: 73 TACSLGGLVEKGKKFFD 89
AC+ G++ G+ D
Sbjct: 265 KACTEMGILTLGRGIHD 281
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A K+F +P K++A+W LI G+ M G A+ F M+++G++
Sbjct: 339 VDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPND 398
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ GVL+ACS GGLVE+GK F M + P HY C+V LL
Sbjct: 399 ITMTGVLSACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVDLL 443
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA K+F+ +P + SW LI GY G++ A LF+ M +
Sbjct: 144 VDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPGRDSAAFN 203
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108
+ G + G +E + FDEM RNV + M+Y
Sbjct: 204 LLIDGYVKV----GDMESARSLFDEMPERNV----ISWTSMIY 238
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +FD +P ++ SW ++I GY G++ A LF+AM E +
Sbjct: 206 IDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNL---- 261
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV-KPTE 100
VS ++ + K F E+Q+ V +P E
Sbjct: 262 VSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNE 297
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRID A FD++ +D SW LI GY + G A+NLF+ M++ +
Sbjct: 450 IDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNK 509
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
++ +GVL+ACS GL++KG+ F M Q ++P HY CMV+LL + Q
Sbjct: 510 LTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQ 560
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ + K+F K+ +W T+I+GY LG+ + A+NLF M ++
Sbjct: 349 MDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTE 408
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V++ VL A + +E G++
Sbjct: 409 VTYSSVLRASASLVALEPGRQ 429
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ +A K+FD + +D +W +I GYGM GE A+ LF M V+
Sbjct: 563 VDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNS 622
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
++ + +L+AC GLV+KG++ F M+ +++P HYACMV LL K
Sbjct: 623 LTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGK 669
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G D+A KIF + KD +W LI Y LG A+ L++ M +GV+
Sbjct: 462 ISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNS 521
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + V+++C+ +E G+
Sbjct: 522 ATLVSVISSCANLAALEHGE 541
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ YT+ + A +F LP KD SW +LI Y G + A+ LF M E G
Sbjct: 252 VVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESG 311
Query: 61 VEYYPVSHIGVLTACSLGGL-----VEKGKKFFDEMQARN 95
++ V+ +C L GL V GK F + RN
Sbjct: 312 LQPDE-----VVISCLLAGLGNDAKVRGGKTFHAAIVRRN 346
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G I+ A K+FDRL +D SW +++ GY G VA+ FE M +
Sbjct: 261 LDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPND 320
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VLTACS GL+++G+ +FD M+ NV+P +HY MV LL
Sbjct: 321 ITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLL 365
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R ++ A IFD + K+ SW LI GY G+ D A LF M + V+
Sbjct: 160 LDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTH 219
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ VL AC+ G +E+GK
Sbjct: 220 FTYSSVLCACASMGSLEQGK 239
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A K+FD + +D +W LI GY A+ L M G++
Sbjct: 57 LNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQ 116
Query: 66 VSHIGVLTACS 76
+ +L A S
Sbjct: 117 FTLASLLKAAS 127
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G AI F MR G+E
Sbjct: 494 VDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 553
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
VS I +L ACS GL+++G FF+ M+ ++P HYAC+V LL +
Sbjct: 554 VSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLAR 601
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y+++G ++ A ++F+ + + SW ++I GY G D+++ LF M ++G+
Sbjct: 293 LDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDI 352
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +L AC+ GL+E GK
Sbjct: 353 FTITTILHACACTGLLENGK 372
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ +F + VKD SW T+I GY + A+NLF M+ + +
Sbjct: 394 MDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNS 452
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
++ +L AC+ +E+G++ + RN + H A
Sbjct: 453 ITMACILPACASLAALERGQEIHGHI-LRNGFSLDRHVA 490
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 14 RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73
R++ A K+FD L +D SW ++I GY G + ++LFE M G+ + + V+
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVA 259
Query: 74 ACSLGGLVEKGK 85
CS G++ G+
Sbjct: 260 GCSNTGMLLLGR 271
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y G + +IFD++ + W L+ GY +G +++LF+ MRE G+
Sbjct: 145 MYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR---- 200
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VE +K FDE+ R+V
Sbjct: 201 -------------VESARKLFDELGDRDV 216
>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
Length = 352
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++FDR+P KD +W ++I+G G +++LF M +G++
Sbjct: 22 IDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNG 81
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL AC+ GLV +GKK+F M + ++PT HY CMV LL
Sbjct: 82 VTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLL 127
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ +A K+FD + +D +W +I GYGM GE A+ LF M V+
Sbjct: 563 VDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNS 622
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
++ + +L+AC GLV+KG++ F M+ +++P HYACMV LL K
Sbjct: 623 LTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGK 669
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G D+A KIF + KD +W LI Y LG A+ L++ M +GV+
Sbjct: 462 ISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNS 521
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + V+++C+ +E G+
Sbjct: 522 ATLVSVISSCANLAALEHGE 541
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ YT+ + A +F LP KD SW +LI Y G + A+ LF M E G
Sbjct: 252 VVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESG 311
Query: 61 VEYYPVSHIGVLTACSLGGL-----VEKGKKFFDEMQARN 95
++ P V+ +C L GL V GK F + RN
Sbjct: 312 LQ--PDE---VVISCLLAGLGNDAKVRGGKTFHAAIVRRN 346
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ + +IF+ L KD+ASW ++I G M G+ A+ LF M + GV+
Sbjct: 407 IEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDD 466
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQ 115
++ IGVL+ACS GGLVE+G+K F M A ++P HY C++ LL + Q
Sbjct: 467 ITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQ 517
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++D A ++F+R PV+D W +I GY D A+ LF M+ V +
Sbjct: 309 YVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTL 368
Query: 69 IGVLTACSLGGLVEKGK 85
+ +LT C+ G +E+GK
Sbjct: 369 VALLTGCAQLGTLEQGK 385
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A +IF+ +P+K W +++ GY G+LD A LFE P
Sbjct: 275 VDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER--------SP 326
Query: 66 VSHIGVLTACSLGGLVEKGK-----KFFDEMQARNVKP 98
V + + TA + G V+ + F EMQ + V P
Sbjct: 327 VRDVVLWTA-MINGYVQFNRFDDAVALFREMQIKRVSP 363
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y GR+ ++F+ +P +D SW LI GY + A+++F M ++ +
Sbjct: 174 MDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPN 233
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ + L+AC ++E GK+
Sbjct: 234 EATVVSTLSACIALKMLELGKE 255
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ +A K+FD + +D +W +I GYGM GE A+ LF M V+
Sbjct: 563 VDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNS 622
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
++ + +L+AC GLV+KG++ F M+ +++P HYACMV LL K
Sbjct: 623 LTFLAILSACCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGK 669
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G D+A KIF + KD +W LI Y LG A+ L++ M +GV+
Sbjct: 462 ISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNS 521
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + V+++C+ +E G+
Sbjct: 522 ATLVSVISSCANLAALEHGE 541
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ YT+ + A +F LP KD SW +LI Y G + A+ LF M E G
Sbjct: 252 VVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESG 311
Query: 61 VEYYPVSHIGVLTACSLGGL-----VEKGKKFFDEMQARN 95
++ V+ +C L GL V GK F + RN
Sbjct: 312 LQPDE-----VVISCLLAGLGNDAKVRGGKTFHAAIVRRN 346
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ID A+++F R +D SW ++I GY G+ A+ +F+ M++ ++ V+
Sbjct: 540 YAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTF 599
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
IGV+TAC+ GLVEKG+K+F+ M ++ PT HY+CM+ L
Sbjct: 600 IGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDL 641
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G A K+F+ + KD +W ++ GY GE + A LF + ++G++
Sbjct: 435 LDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNE 494
Query: 66 VSHIGVLTAC-SLGGLVEKGKKF 87
+ V+ AC S E+GK+F
Sbjct: 495 FTFSSVINACASPTAAAEQGKQF 517
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G + A +FD++ ++D +W ++I GY G+ +F M+ GV+
Sbjct: 236 ISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTH 295
Query: 66 VSHIGVLTACS 76
++ V+ +C+
Sbjct: 296 MTFASVIKSCA 306
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y +T ++ ++FD + ++ SW +L+ GY G LF M+ +GV
Sbjct: 135 VDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGV 190
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG ID K+F+R+ +D+ SW +I+GY G A++LFE M
Sbjct: 433 VDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDS 492
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+AC GLV++G+++F M + + P+ HY CMV LL
Sbjct: 493 VTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLL 538
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R + A ++FD +P ++ SW +LI Y G + A+ LF M G
Sbjct: 193 VDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDE 252
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ V++AC+ +G++ M
Sbjct: 253 VTLSSVMSACAGLAADREGRQVHAHM 278
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYYPV 66
Y R GR+ A ++FD +P++++ S+ L+ Y LG D A LFEA+ + D Y V
Sbjct: 62 YARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAV 120
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR A IFD +P + S +++ GY ++ A +F M E V +
Sbjct: 295 VDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWN 354
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
V ++ A + G E+ + F +++ ++ PT Y
Sbjct: 355 V----LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTY 388
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +FD L +D+ SW T+I GY G+ A+ FEAM ++G
Sbjct: 434 VDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDE 493
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+ACS GL+E+GKK F+ + + + PT HYACMV +L
Sbjct: 494 VTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDIL 539
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + ++ A IF+RL +D +W ++ GY G+ + A+ F M+ +GV+
Sbjct: 333 VDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNE 392
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ L+ CS ++ G++
Sbjct: 393 FTLASSLSGCSRIATLDSGRQL 414
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A K+F +P +D SW LI G+ G + +F M +G
Sbjct: 233 VNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNM 291
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ I +L +CS V+ GK+
Sbjct: 292 YTFISILRSCSSLSDVDLGKQ 312
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++FDR+P KD +W ++I+G G +++LF M +G++
Sbjct: 162 IDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNG 221
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL AC+ GLV +GKK+F M + ++PT HY CMV LL
Sbjct: 222 VTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLL 267
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + A K+FD +P++D SW T+I GY M GE+ +A +F DG E
Sbjct: 30 LAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIF-----DGTEDRD 84
Query: 66 V-SHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
S +++A + ++ + + EM A ++ P
Sbjct: 85 AFSWSSMISAYAKSRRSKEALELWREMHAASIIP 118
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G + LA +IFD +D+ SW ++I Y A+ L+ M + ++
Sbjct: 64 YAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITL 123
Query: 69 IGVLTACS-LGGLV 81
+ V++ACS LG L
Sbjct: 124 VSVVSACSDLGALA 137
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ + +IF+ L KD+ASW ++I G M G+ A+ LF M + GV+
Sbjct: 316 IEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDD 375
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQ 115
++ IGVL+ACS GGLVE+G+K F M A ++P HY C++ LL + Q
Sbjct: 376 ITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQ 426
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++D A ++F+R PV+D W +I GY D A+ LF M+ V +
Sbjct: 243 YVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTL 302
Query: 69 IGVLTACSLG----------GLVEKGKKFFDEMQARN 95
+ +LT +G G +EK + F+ ++ ++
Sbjct: 303 VALLTDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKD 339
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y GR+ ++F+ +P +D SW LI GY + A+++F + D P
Sbjct: 174 MDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFND----MP 229
Query: 66 VSHIGVLTACSLG----GLVEKGKKFFDEMQARNV 96
+ + T+ G G +++ ++ F+ R+V
Sbjct: 230 IKTVICWTSMVSGYVNCGQLDEARELFERSPVRDV 264
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +FD L +D+ SW T+I GY G+ A+ FEAM ++G
Sbjct: 675 VDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDE 734
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+ACS GL+E+GKK F+ + + + PT HYACMV +L
Sbjct: 735 VTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDIL 780
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A K+F +P +D SW LI G+ G A+NLF MR +GVE
Sbjct: 170 VNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANE 229
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
++ L ACS+ +E GK+ E
Sbjct: 230 FTYATALKACSMCLDLEFGKQVHAE 254
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++F +P +++ SW L+ G+ +G+ + +NLF M + +
Sbjct: 271 VDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSK 330
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ VL C+ G + G+
Sbjct: 331 FTLSTVLKGCANSGNLRAGQ 350
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + ++ A IF+RL +D +W ++ GY G+ + A+ F M+ +GV+
Sbjct: 574 VDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNE 633
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ L+ CS ++ G++
Sbjct: 634 FTLASSLSGCSRIATLDSGRQL 655
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + ++F+ +D SW L+ G+ D + +F M +G +
Sbjct: 476 YMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTF 535
Query: 69 IGVLTACSLGGLVEKGKK 86
I +L +CS V+ GK+
Sbjct: 536 ISILRSCSSLSDVDLGKQ 553
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT+ G I+ A+++F +LP K+ SW ++I GY G A+ LF M+++GV+
Sbjct: 657 ISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDW 716
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +G L+AC+ GL+E+G F M+ N++P HY CMV L
Sbjct: 717 ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLF 761
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ + + G I A K+FD LP +D +W ++I G G A NLF+ M E+GV+
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
V+ + +L AC+ +E+GKK M+
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMK 339
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT+ G ++ A ++FD + ++ SW +I G+ G +D A F M E G+E
Sbjct: 354 LSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNR 413
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ + +L ACS +++G++ D +
Sbjct: 414 VTFMSILGACSSPSALKRGQQIQDHI 439
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ + G + A +F+ +P +D SW T+I G+ G+ VA + F+ M+E G++
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDK 615
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ G+L AC+ + +G++
Sbjct: 616 ITFTGLLNACASPEALTEGRRL 637
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M ++ Y + G A +IFD + KD SW L+ GY G + A L E M +D
Sbjct: 147 MWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDS 206
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFD 89
V+ + + +L AC+ V+KG++ ++
Sbjct: 207 VKPDKRTFVSMLNACADARNVDKGRELYN 235
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A+++F+++ ++ +W +I Y + D A+ F+A+ ++G++
Sbjct: 455 LSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNS 514
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +L C +E GK
Sbjct: 515 STFTSILNVCKSSDSLELGK 534
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G +D + +IF L KD+ASW ++I G M G+ A+ LF M G +
Sbjct: 518 IEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDD 577
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ IGVL+ACS GGLVE+G++FF+ M + ++P HY C++ LL
Sbjct: 578 ITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 623
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G + A +FD+ PV+D W +I GY D A+ LF M+ V+ +
Sbjct: 420 YINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTV 479
Query: 69 IGVLTACSLGGLVEKGK 85
+ +LT C+ G +E+GK
Sbjct: 480 VTLLTGCAQLGALEQGK 496
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +++A IFD + +K+ W ++I GY G+L A +LF+ P
Sbjct: 386 LDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK--------SP 437
Query: 66 VSHIGVLTACSLGGLVE-----KGKKFFDEMQARNVKP 98
V + + TA + G V+ F EMQ + VKP
Sbjct: 438 VRDVVLWTA-MINGYVQFHHFDDAVALFREMQIQRVKP 474
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
+D Y ++ A K+FD + +DS SW +I GY + AIN F M+++G E
Sbjct: 285 IDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPD 344
Query: 65 PVSHIGVLTACS 76
+ + L+AC+
Sbjct: 345 EATVVSTLSACT 356
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G AI F MR G+E
Sbjct: 367 VDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 426
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
VS I +L ACS GL+++G FF+ M+ ++P HYAC+V LL +
Sbjct: 427 VSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLAR 474
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y+++G ++ A ++F+ + + SW ++I GY G D+++ LF M ++ +
Sbjct: 266 LDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNS 325
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
++ +L AC+ +E+G++ + RN + H A
Sbjct: 326 ITMACILPACASLAALERGQEIHGHI-LRNGFSLDRHVA 363
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y G + +IFD++ + W L+ GY +G +++LF+ MRE G+
Sbjct: 145 MYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR---- 200
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VE +K FDE+ R+V
Sbjct: 201 -------------VESARKLFDELGDRDV 216
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 14 RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV-- 71
R++ A K+FD L +D SW ++I GY G + ++LFE M G+ + + V
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVEL 259
Query: 72 -LTAC-----SLGGLVEKGKKFFDEMQARNV 96
L C S G + + F+ M R+V
Sbjct: 260 TLNNCLLDMYSKSGNLNSAIQVFETMGERSV 290
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G + A IFD +PVK SW +I GYGM G+ +VA+ LF+ M G++
Sbjct: 256 VNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDG 315
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ + VL+ACS GL KG +F M+ + ++P HY+CMV LL
Sbjct: 316 TAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLL 361
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++G ID K+FD +P K +W +I GY G + + L++ M G P
Sbjct: 155 LTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDP 214
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
++ +GVL++C+ G + GK+ +M+
Sbjct: 215 LTLVGVLSSCAHLGALSVGKEVERKMEG 242
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+ Y + ID A K+FD P K + + +L+ GY + + + LF MRE GVE
Sbjct: 52 ISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEI 111
Query: 64 YPVSHIGVLTACSLGG 79
V+ +G++ C + G
Sbjct: 112 NGVTMLGLVQPCGIPG 127
>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
Length = 720
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I ++K+F+ L K +ASW +I+GYG+ G AI LFE M+ G
Sbjct: 389 IDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 448
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ +GVLTAC+ GL+ +G ++ D+M++ +KP HYAC++ +L + Q
Sbjct: 449 LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQ 499
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + +FD + K SW T+I GY G D A+ +F M G++
Sbjct: 288 LSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCG 347
Query: 66 VSHIGVLTACSL 77
+S + V ACSL
Sbjct: 348 ISMMPVFGACSL 359
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD + KD SW +I GYGM G AI LF MR+ G+E
Sbjct: 541 VDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDE 600
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S + +L ACS GLV++G +FF+ M+ ++PT HYAC+V +L +
Sbjct: 601 ISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 648
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G +D A +F + + S+ ++I GY G A+ LFE M E+G+
Sbjct: 338 LDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDV 397
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL C+ L+++GK+
Sbjct: 398 YTVTAVLNCCARNRLLDEGKR 418
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY + R+D A K+FD + +D SW ++I GY G + +++F M G+E +
Sbjct: 239 FYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLAT 298
Query: 68 HIGVLTACSLGGLVEKGK 85
+ V C+ L+ G+
Sbjct: 299 IVSVFAGCADSRLISLGR 316
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
YT G + A+++FD++ ++ + W L+ G+ +I LF+ M GVE
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVE 192
>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 2 IEPRL-DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
IE L D Y + G + A +F + K SW +I GYGM G +D AI F M E G
Sbjct: 540 IETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYGMHGRIDAAITFFNQMVELG 599
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ ++ + +L+ACS G VE+GK +FD M+ V+P+ H+AC+V LL
Sbjct: 600 IKPNHITFMNILSACSHSGSVEQGKFYFDLMRDFGVEPSSEHFACLVDLL 649
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + A K+FD +PV+D SW ++I Y GE + A+ +F + + V+
Sbjct: 141 LGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANEALEMFRLLVNERVKLDW 200
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
V + V ACS G+++ K + R V E
Sbjct: 201 VIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEA 236
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G D A IF+ + K S +W ++I G+ G AI+L + M + ++
Sbjct: 444 IGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSGNSIEAIHLVDQMYLNCLKITD 503
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V + + AC+ +EKGK
Sbjct: 504 VVFLSAIQACADMVCLEKGK 523
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+ + A +IF + K SW ++I Y G A +F M E VE
Sbjct: 242 IEMYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEPNV 301
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ +GVL +CS + +GK
Sbjct: 302 ITIMGVLKSCSGLSWLREGK 321
>gi|357453189|ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359886|gb|ABD32760.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485919|gb|AES67122.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A K+FD + ++ +W T++ GYGM G + +F M E G
Sbjct: 151 INMYAKCGELEFARKVFDGMCERNEVTWSTMMAGYGMHGRFEEVFEMFNRMVEVGERMDN 210
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS VLTACS GG VEKG++ F+ M+ R VKP HY CMV +L
Sbjct: 211 VSFTVVLTACSHGGFVEKGREIFEMMKVRFGVKPDVRHYTCMVDML 256
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 5 RLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
RLD + G +D A +FD +P ++ SW T+I GY + GE + A+ LF M+ GV+
Sbjct: 277 RLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPN 336
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQA---RNVKPTETHYACMVYLL 110
V+ + VL+ACS G V +G ++F+ M +N++P + HYACMV LL
Sbjct: 337 YVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLL 385
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88
DS + ++ + G LG L+ ++E RE+G++ + H L C+ G ++K F
Sbjct: 235 DSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLF 294
Query: 89 DEMQARNV 96
DEM RNV
Sbjct: 295 DEMPQRNV 302
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G +D + +IF L KD+ASW ++I G M G+ A+ LF M G +
Sbjct: 472 IEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDD 531
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ IGVL+ACS GGLVE+G++FF+ M + ++P HY C++ LL
Sbjct: 532 ITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLL 577
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G + A +FD+ PV+D W +I GY D A+ LF M+ ++ +
Sbjct: 374 YINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTV 433
Query: 69 IGVLTACSLGGLVEKGK 85
+ +LT C+ G +E+GK
Sbjct: 434 VTLLTGCAQLGALEQGK 450
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
+D Y ++ A K+FD + +DS SW +I GY + AIN F M+++G E
Sbjct: 239 IDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPD 298
Query: 65 PVSHIGVLTACS 76
+ + L+AC+
Sbjct: 299 EATVVSTLSACT 310
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +++A IFD + +K+ W ++I GY G+L A +LF+ P
Sbjct: 340 LDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK--------SP 391
Query: 66 VSHIGVLTACSLGGLVE-----KGKKFFDEMQARNVKP 98
V + + TA + G V+ F EMQ + +KP
Sbjct: 392 VRDVVLWTA-MINGYVQFHHFDDAVALFREMQIQKIKP 428
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT+ G I+ A+++F +LP K+ SW ++I GY G A+ LF M+++GV+
Sbjct: 657 ISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDW 716
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +G L+AC+ GL+E+G F M+ N++P HY CMV L
Sbjct: 717 ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLF 761
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ + + G I A K+FD LP +D +W ++I G G A NLF+ M E+GV+
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
V+ + +L AC+ +E+GKK M+
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMK 339
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT+ G ++ A ++FD + ++ SW +I G+ G +D A F M E G+E
Sbjct: 354 LSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNR 413
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ + +L ACS +++G++ D +
Sbjct: 414 VTFMSILGACSSPSALKRGQQIQDHI 439
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ + G + A +F+ +P +D SW T+I G+ G+ VA + F+ M+E G++
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDK 615
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ G+L AC+ + +G++
Sbjct: 616 ITFTGLLNACASPEALTEGRRL 637
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G A +IFD + KD SW L+ GY G + A L E M +D V+
Sbjct: 152 INMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDK 211
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+ + +L AC+ V+KG++ ++
Sbjct: 212 RTFVSMLNACADARNVDKGRELYN 235
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A+++F+++ ++ +W +I Y + D A+ F+A+ ++G++
Sbjct: 455 LSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNS 514
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +L C +E GK
Sbjct: 515 STFTSILNVCKSSDSLELGK 534
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 67/105 (63%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+++ + ++F+ + KD SW +I GYG+ G+ + A+ +F+ M + V+
Sbjct: 533 VDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNA 592
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + +L+AC+ G V++GK+ FD MQ ++KP H+ACM LL
Sbjct: 593 ITFLSLLSACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACMADLL 637
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A K+F R +D +W TLI Y G AI LF+ M + +
Sbjct: 433 IDMYGKGGNLSIAWKMFCRTQ-RDVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNS 491
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + VL+AC +EKGK
Sbjct: 492 ATLVIVLSACCHLPSLEKGK 511
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ G ++ A+ F ++ KD SW ++I G ++ +NLF M+ D V YP
Sbjct: 277 LSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDV--YP 334
Query: 66 VSHIGVLTACSLGG-----LVEKGKKFFDEMQARN 95
G++ +C L G +V +GK F + RN
Sbjct: 335 ---DGIVVSCILLGFGNSMMVREGKAFHGLIVRRN 366
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G++ + K F + K + SW ++ GY M G+ +VA+ LF M+E V
Sbjct: 674 IDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDS 733
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
VS+I VL+AC GL+++G+ F M + N++P+ HYACMV LL
Sbjct: 734 VSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLL 779
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + LA++IFD++ VKD SW T++ GY G + L + M+ ++
Sbjct: 269 IDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNK 328
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+S + + A + +EKGK+ +
Sbjct: 329 ISVVNSVLAATETRDLEKGKEVHN 352
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + G +D A K+FD++P KD ASW +I G A+ +F+ M+ E+GVE
Sbjct: 169 VDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPD 228
Query: 65 PVSHIGVLTACS 76
VS + + A S
Sbjct: 229 SVSILNLAPAVS 240
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YTR A +F+R+ KD +W TLI G+ G+ +A+ +F ++ GV+
Sbjct: 471 VSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDS 530
Query: 66 VSHIGVLTACSL 77
+ + +L+AC+L
Sbjct: 531 GTMVSLLSACAL 542
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFD-RLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G + A +F VKD SW +I GY G + AI+ F M+ + V
Sbjct: 572 IDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPN 631
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ + +L A S ++ + F
Sbjct: 632 LVTFVTILPAVSYLSILREAMAF 654
>gi|414865182|tpg|DAA43739.1| TPA: hypothetical protein ZEAMMB73_281838 [Zea mays]
Length = 1925
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D ++R G I LA ++FD KDS +W +I Y M G + A++LF M + GV+
Sbjct: 749 IDTHSRCGSISLARELFDSSVEKDSVTWGAMINAYSMHGNGEAALDLFSMMIDSGVDPDD 808
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +L+AC+ GLVE+G+ F +QA + P HYACMV LL
Sbjct: 809 ITFVSILSACAHNGLVEQGRTLFKSLQADYGITPRMEHYACMVDLL 854
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G+ID++ ++FD + ++D SW ++ GY + A+ + + M++ G+
Sbjct: 181 LDLYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSLNECFREAVEMLQEMQQGGMRPNA 240
Query: 66 VSHIGVLTAC 75
+ +G++ C
Sbjct: 241 STFVGIVGMC 250
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y I ++ +F ++ V+ SW T+I G+ +G+ D + LF M + V++
Sbjct: 449 LAMYADCRDISTSHTLFQKMEVRMLISWNTMISGFAEIGDSDTCLILFCQMFHEEVQFDL 508
Query: 66 VSHIGVLTACSLGG 79
V+ IG++++ S+ G
Sbjct: 509 VTLIGLISSFSVPG 522
>gi|296082095|emb|CBI21100.3| unnamed protein product [Vitis vinifera]
Length = 278
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A K+FD++ ++ A+W ++ GY G+ + AI LF MRE G
Sbjct: 29 IDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDS 88
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYN--QKAR 118
++ + VL AC+ GLVE GK++FD M Q + P HY CMV LL + Q+AR
Sbjct: 89 ITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEAR 144
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I ++K+F+ L K +ASW +I+GYG+ G AI LFE M+ G
Sbjct: 994 IDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 1053
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ +GVLTAC+ GL+ +G ++ D+M++ +KP HYAC++ +L + Q
Sbjct: 1054 LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQ 1104
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + +FD + K SW T+I GY G D A+ +F M G++
Sbjct: 893 LSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCG 952
Query: 66 VSHIGVLTACSL 77
+S + V ACSL
Sbjct: 953 ISMMPVFGACSL 964
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A K+FD++ ++ A+W ++ GY G+ + AI LF MRE G
Sbjct: 350 IDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDS 409
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + VL AC+ GLVE GK++FD M Q + P HY CMV LL
Sbjct: 410 ITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLL 455
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 34/125 (27%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G +D A K+FD +P K++ W +LI GY +G L+ I L M ++
Sbjct: 250 INLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDR 309
Query: 66 VSHIGVLTACS------LG----------------------------GLVEKGKKFFDEM 91
+ GVL+AC+ LG G + +K FD+M
Sbjct: 310 FTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQM 369
Query: 92 QARNV 96
RNV
Sbjct: 370 NERNV 374
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
L+FY G I A ++FD KD W LI GY G + + +F+ M E V
Sbjct: 147 LNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPN 206
Query: 65 PVSHIGVLTAC 75
+ +G++ AC
Sbjct: 207 EGTMMGLIVAC 217
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT++G N +F+++ KD SW T++ GYG+ G + AI F+ M +DG E
Sbjct: 1291 INMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 1350
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLV +G++ FD+M + V+P HYACMV LL
Sbjct: 1351 VTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLL 1396
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR+D A K+F+R+ V+ SW T++ GY + + A +F M G+E
Sbjct: 1015 MGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNL 1074
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111
V+ +L++ + G + + F M+ R + T A ++ + +
Sbjct: 1075 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSV 1120
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 63/107 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT+ G++ A IFD + +D +W +I GYGM GE + A+ LF M ++
Sbjct: 569 VDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNS 628
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
++ + +L+AC GLV++G+K F M ++P HYACMV LL K
Sbjct: 629 LTFLAILSACCHAGLVDEGRKLFIRMGGYRLEPNLKHYACMVDLLGK 675
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ Y++ + A +F L KD SW LI Y G A+ LF+ M + G
Sbjct: 258 VVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSG 317
Query: 61 VEYYPVSHIGVLTACSLGGL-----VEKGKKFFDEMQARN 95
++ VL +C L GL V +GK F + RN
Sbjct: 318 LQPDE-----VLVSCVLSGLGSSANVNRGKAFHAVIIRRN 352
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I ++K+F+ L K +ASW +I+GYG+ G AI LFE M+ G
Sbjct: 639 IDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 698
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ +GVLTAC+ GL+ +G ++ D+M++ +KP HYAC++ +L + Q
Sbjct: 699 LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQ 749
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + +FD + K SW T+I GY G D A+ +F M G++
Sbjct: 538 LSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCG 597
Query: 66 VSHIGVLTACSL 77
+S + V ACSL
Sbjct: 598 ISMMPVFGACSL 609
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID A K+F +P K+ SW ++I Y G A+ LF+ M G++
Sbjct: 429 MDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDH 488
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
++ IGVL+ACS GG V +G+ F+ M+ V+P HYACMV LL +
Sbjct: 489 ITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSR 536
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y TG + A ++FD VKD +W T+I GY LD AI LF +M V+ V+
Sbjct: 197 YVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTM 256
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
I +L+ACS G E GK + ++ +++ + M+ + +K
Sbjct: 257 IALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVK 300
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ LD Y + G + A +IF+ + +D SW +L+ GY G+L A LF+ M E
Sbjct: 290 LLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERN 349
Query: 61 V 61
+
Sbjct: 350 I 350
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+KIFD + D SW +LILGY G + A+ LF+ MR V+
Sbjct: 511 IDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNH 570
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ +GVLTACS GLVE+G K + M+ + PT H +CMV LL +
Sbjct: 571 VTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLAR 618
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + + A K+FD +P ++ SW ++I GY G+ A+ + M + GV
Sbjct: 105 LNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQ 164
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ ++ ACS G + G++
Sbjct: 165 FTFGSIIKACSSLGDIGLGRQL 186
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT++ I A +F R+ +D SW ++I G+ LG A+ F+ M GV Y P
Sbjct: 206 ISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGV-YLP 264
Query: 66 VSHI--GVLTACS 76
I V +ACS
Sbjct: 265 NEFIFGSVFSACS 277
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G + A +F ++ D +W +I G+ G+ AI F MR G+ +
Sbjct: 309 DMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEI 368
Query: 67 SHIGVLTACS 76
+ +L AC+
Sbjct: 369 TVRSLLCACT 378
>gi|297737392|emb|CBI26593.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+++ + +IF+ + +D +W +I GYGM G+ AI F+ M E +
Sbjct: 259 IDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSAKPNG 318
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VL+AC+ GLV++GK F +MQ +V P HYACMV LL
Sbjct: 319 LTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVDLL 363
>gi|302790445|ref|XP_002976990.1| hypothetical protein SELMODRAFT_105776 [Selaginella moellendorffii]
gi|300155468|gb|EFJ22100.1| hypothetical protein SELMODRAFT_105776 [Selaginella moellendorffii]
Length = 284
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
+D Y + G + A +FDR+ +D SW ++ILGY G D ++ L E MR+D G+
Sbjct: 106 IDTYGKCGSMVDARSVFDRMKTQDVVSWSSMILGYAESGRGDTSLELLERMRDDGGLRPN 165
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQ 115
V+ + +L AC GLV++G++FF EM+ + P+E H +C+V LL + N+
Sbjct: 166 GVTFVSILAACGHAGLVDQGRQFFREMRDVYGIVPSEEHISCVVDLLCRANR 217
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP----VSHIGVLT 73
A KIF+ P K SW LILGY G+ A++LF M +E V+++ L
Sbjct: 4 ARKIFETNPRKSVVSWNALILGYAENGDAKQALDLFSQMESSSLERSCRPNRVTYLAALK 63
Query: 74 ACSLGGLVEKGKK 86
AC+ +E+GK
Sbjct: 64 ACANLASIERGKS 76
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT++G N +F+++ KD SW T++ GYG+ G + AI F+ M +DG E
Sbjct: 453 INMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 512
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLV +G++ FD+M + V+P HYACMV LL
Sbjct: 513 VTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLL 558
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR+D A K+F+R+ V+ SW T++ GY + + A +F M G+E
Sbjct: 177 MGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNL 236
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
V+ +L++ + G + + F M+ R + T
Sbjct: 237 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGAT 270
>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22150, chloroplastic; Flags: Precursor
gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 820
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A +F + ++S ++ T+ILGYG G + AI+LF +M+E G++
Sbjct: 563 VDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDA 622
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + VL+ACS GL+++G K F+EM + N++P+ HY C+ +L
Sbjct: 623 ITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDML 668
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 6 LDFYTRTGRIDLANKIFDR--LPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y+++G I ++ K+F+ +D A+W ++I GY G + +F M E +
Sbjct: 460 IDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRP 519
Query: 64 YPVSHIGVLTACSLGGLVEKGKKF 87
V+ +L ACS G V+ GK+
Sbjct: 520 NAVTVASILPACSQIGSVDLGKQL 543
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 16 DLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75
D+ K+FD + K+ +W TLI Y G A F M V+ PVS + V A
Sbjct: 165 DVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAV 224
Query: 76 SLGGLVEKGKKFFDEM 91
S+ ++K F+ M
Sbjct: 225 SISRSIKKANVFYGLM 240
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+KIFD + D SW +LILGY G + A+ LF+ MR V+
Sbjct: 249 IDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNH 308
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ +GVLTACS GLVE+G K + M+ + PT H +CMV LL +
Sbjct: 309 VTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLAR 356
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + LA +F+R+ K+ +W T+I G M G A+ LF M G+
Sbjct: 251 VDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDD 310
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVL AC+ GLV+KG++ FD M + +KP HY CMV LL +
Sbjct: 311 IAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLAR 358
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+ A +FD +P +++ SW ++ GY G+ A+ +F M+ + V
Sbjct: 153 YARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVL 212
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+GVL AC+ G +E+GK ++A +K
Sbjct: 213 VGVLAACAQHGALEQGKWVHGYLKAHGIK 241
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT++G N +F+++ KD SW T++ GYG+ G + AI F+ M +DG E
Sbjct: 453 INMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDG 512
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLV +G++ FD+M + V+P HYACMV LL
Sbjct: 513 VTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLL 558
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR+D A K+F+R+ V+ SW T++ GY + + A +F M G+E
Sbjct: 177 MGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNL 236
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111
V+ +L++ + G + + F M+ R + T A ++ + +
Sbjct: 237 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSV 282
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G ID+A +FD L K+ SW +L+ GYGM G A+ +F+ MR G++
Sbjct: 209 IDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDG 268
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS G++++G +FF+ M V P + HYACMV LL
Sbjct: 269 VTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLL 314
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A+K+FDR+ KD SW ++ GY +G + A+ LFE MRE+ +E
Sbjct: 55 VDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNV 114
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
VS V+ A + GL + F EMQ
Sbjct: 115 VSWSAVIAAFAQRGLGCETLDVFREMQ 141
>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
Length = 1026
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D ++R G I A ++FD KDS +W +I Y M G + A++LF M + G
Sbjct: 780 VLNALIDTHSRCGSISFARELFDSSVEKDSVTWGAMINAYSMHGNGEAALDLFSMMIDSG 839
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ ++ + +L+ACS GLVE+G+ F +QA + P HYACMV LL
Sbjct: 840 VDPDDITFVSILSACSHNGLVEQGRTLFKSLQADHGITPRMEHYACMVDLL 890
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G+ID++ ++FD + ++D SW ++ GY + G A+ + M++ G+
Sbjct: 181 LDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQCGMSPNA 240
Query: 66 VSHIGVLTACSLGG 79
+ +G++ C G
Sbjct: 241 STLVGIVGMCGSAG 254
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 35/125 (28%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G I + +F ++ V+ SW T+I G+ +G+ + ++ LF M + V +
Sbjct: 485 LAMYADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQMFHEEVWFDL 544
Query: 66 VSHIGVLTACSLG-----------------------------------GLVEKGKKFFDE 90
V+ IG++++ S+ G+VE G++ F+
Sbjct: 545 VTLIGLISSLSVSEDAIVGESVHSLAIKSGCISDVSLTNALITMYANCGIVEAGQQLFNS 604
Query: 91 MQARN 95
+RN
Sbjct: 605 FCSRN 609
>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
Length = 438
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A + F R+ D+ SW ++ + G +D A+ F+ M+E G +
Sbjct: 108 VDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNY 167
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +L+ACS GLVE+G+K+FD M AR + P HYACMV LL
Sbjct: 168 VTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLL 213
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L + + G + LA +IF R W +I Y G+ AI LF+ + +E
Sbjct: 7 LSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPNS 66
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + VL AC+ + GK+
Sbjct: 67 VTLMEVLDACASLAALRDGKR 87
>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
Length = 683
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A ++FD + ++S +W +I GYGM G+ +I+LF M +DGV
Sbjct: 477 LNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPND 536
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ +L+ CS G+V K++FD M Q N+ P+ HYACMV +L +
Sbjct: 537 VAFTSILSTCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLAR 584
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+R+P ++ SW +++ G G + LF MR+D V
Sbjct: 174 VDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSE 233
Query: 66 VSHIGVLTACS 76
+ V+TACS
Sbjct: 234 YTIATVITACS 244
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + + AN+IF + KD +W +++ GY + A+ LF+ M G
Sbjct: 371 VVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKG 430
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKF 87
+S + L+A G + GK F
Sbjct: 431 PSPDAISVVHALSASVCLGDLLIGKSF 457
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF 53
LD Y + G ++ A +FD L D W T+I+GY G A+ LF
Sbjct: 275 LDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLF 322
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A ++FD + ++S +W +I GYGM G+ +I+LF M +DGV
Sbjct: 510 LNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPND 569
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
++ +L+ CS G+V GK++FD M Q N+ P+ HYACMV +L +
Sbjct: 570 IAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLAR 617
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + ++ A K+F+R+P ++ SW ++I G G + LF MR+D V
Sbjct: 207 VDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSE 266
Query: 66 VSHIGVLTACS 76
+ V+TACS
Sbjct: 267 YTIATVITACS 277
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +D A +FD L D W T+I+GY G A+ LF R +
Sbjct: 308 LDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNS 367
Query: 66 VSHIGVLTA 74
V+ VL+A
Sbjct: 368 VTTATVLSA 376
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + A++IF R+ KD +W ++I GY D A+ LF+ M G
Sbjct: 409 VDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDA 468
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+S + L+A G + GK
Sbjct: 469 ISVVNALSASVCLGDLLIGKSI 490
>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY++ GRI+ A +FD++ K+ SW LI GYG G A+ LFE M ++ +
Sbjct: 219 VDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNH 278
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
++ + VL+ACS GL E+G + F M N +KP HYACM+ L+
Sbjct: 279 ITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPRAMHYACMIELM 324
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ A +F+ +P K + W T+I GY + G + A++++ MR+ GV+
Sbjct: 118 IDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDH 177
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ C+ VE K+
Sbjct: 178 FTFSMIVRICARLASVEHAKQ 198
>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
Length = 408
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I LA ++F+ + KD +W T+I G +LG + A LF+ M+E GVE
Sbjct: 77 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPND 136
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS G+V++G+K D M + ++P HY C++ LL +
Sbjct: 137 ITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 184
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV-EYY 64
L + + G ++ A +F +P +D SW +++ Y G+ + A+ LF+ M+ GV
Sbjct: 13 LSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMQAVGVNSIV 72
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
+ + + C G + + F+ M++++V T A M L
Sbjct: 73 GTALVDMYAKC---GKISLATQVFNAMESKDVLAWNTIIAGMAIL 114
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I L+ +IFDRL KD ASW +I GYG+ G A+ LFE M G++
Sbjct: 453 IDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDD 512
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ G+L ACS GLVE G ++F++M N++P HY C+V +L
Sbjct: 513 FTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDML 558
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G+ A +FD + + SW +I GY G D AINLF M DG++ Y
Sbjct: 352 LSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE 411
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ + V ACS + GK+
Sbjct: 412 IAIMCVCGACSQLSALRLGKEL 433
>gi|297800844|ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314142|gb|EFH44565.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 458
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 62/98 (63%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + +D A+ +F +P +D SW +LILGYG+ G++ V+I LF+ M ++G+E V
Sbjct: 259 DMYVKCSILDYAHTVFVNMPRRDVISWSSLILGYGLDGDVVVSIKLFDEMLQEGIEPNAV 318
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
+ +GVL+AC+ GGLVEK + MQ + P HYA
Sbjct: 319 TFLGVLSACAHGGLVEKSWLYLRLMQEYKIVPELKHYA 356
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I A K+FD +PV+DS + + GY GE + + +F MR G V
Sbjct: 160 YVDLGEILHARKLFDDMPVRDSVLYTAMFGGYVQQGEALLGLAVFREMRYSGFLLDSVVM 219
Query: 69 IGVLTACSLGGLVEKGKK 86
+ +L AC G ++ GK
Sbjct: 220 VSLLMACGQLGALKHGKS 237
>gi|302805647|ref|XP_002984574.1| hypothetical protein SELMODRAFT_120669 [Selaginella moellendorffii]
gi|300147556|gb|EFJ14219.1| hypothetical protein SELMODRAFT_120669 [Selaginella moellendorffii]
Length = 369
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A + F R+ D+ SW ++ + G +D A+ F+ M+E G +
Sbjct: 39 VDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNY 98
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +L+ACS GLVE+G+K+FD M AR + P HYACMV LL
Sbjct: 99 VTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLL 144
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I L+ +IFDRL KD ASW +I GYG+ G A+ LFE M G++
Sbjct: 551 IDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDD 610
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ G+L ACS GLVE G ++F++M N++P HY C+V +L
Sbjct: 611 FTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDML 656
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G+ A +FD + + SW +I GY G D AINLF M DG++ Y
Sbjct: 450 LSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE 509
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ + V ACS + GK+
Sbjct: 510 IAIMCVCGACSQLSALRLGKEL 531
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
YTR G + + ++FD + K +SW L+ GY + A++L+ M + G++ +
Sbjct: 352 YTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTI 411
Query: 69 IGVLTACS 76
+L ACS
Sbjct: 412 GSLLLACS 419
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y + G ++ A K+F+ +P ++ SW ++I G+ G L + N F M + P
Sbjct: 146 YGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVA 205
Query: 67 SHIGVLTACSLGGLVEKG 84
+ + VL C+ +EKG
Sbjct: 206 TLVTVLPVCAGEEDIEKG 223
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G++D + +F +P K++ SW +I M G A+ F AM D
Sbjct: 383 IDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDE 442
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
++ +G+L+ACS GGL+E G+ +F M+ NVKP HYACMV LL ++ A+
Sbjct: 443 ITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACMVDLLGRHGHLAK 496
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A++ FD +P+K+ SW +++ G +D A + FE M E +
Sbjct: 251 VDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNI---- 306
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
+S +++ GG + ++ M++ + P E A
Sbjct: 307 ISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLA 345
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 12 TGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
G + + ++F + P ++ SW T+I G GE A LF MR GV + +
Sbjct: 155 AGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVS 214
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNVK 97
+L CS G +E G+ M A +
Sbjct: 215 LLLVCSKEGNLEVGRLVHCHMLASGSR 241
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I LA ++F+ + KD +W T+I G +LG + A LF+ M+E GVE
Sbjct: 235 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPND 294
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS G+V++G+K D M + ++P HY C++ LL +
Sbjct: 295 ITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 342
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FDR+ +D SW T+I GY ++G++D A LF+ M E +
Sbjct: 72 IDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNL---- 127
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
VS +L G VE F EM R+V + AC
Sbjct: 128 VSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLAC 167
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G ++ A +F +P +D SW +++ Y G+ + A+ LF+ M GV+ +
Sbjct: 137 FVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATV 196
Query: 69 IGVLTACSLGGLVEKG 84
+ +L+AC+ G ++KG
Sbjct: 197 VSLLSACAHLGALDKG 212
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y + A ++F+ +D SW +I GY GE+ A +F+ M
Sbjct: 36 IVSSLIHLYANGKDLGAAKQLFNLCSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRD 95
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
V +S ++ ++ G +++ K+ FDEM RN+
Sbjct: 96 V----ISWNTMINGYAIVGKIDEAKRLFDEMPERNL 127
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G I + +FD L KD ASW +I YG+ G+ + +I LFE MR+ G
Sbjct: 480 IDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDG 539
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
+ IG+LT CS GLVE+G K+F+EMQ ++P HYAC++ +L
Sbjct: 540 FTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDML 585
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G A +FD + K S SW +I GY G + A+ LF + DG +
Sbjct: 379 LSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSD 438
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
++ + VL ACS + GK+
Sbjct: 439 IAVVSVLGACSQQSALRLGKE 459
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y++ G + A +FD+ K++ SW T+I G G + A NLF M+ ++ +E
Sbjct: 176 VDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVN 235
Query: 65 PVSHIGVLTAC 75
V+ + +L AC
Sbjct: 236 EVTVLNILPAC 246
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A +F++ P + + W +I G G+ G A++LF M+++G+
Sbjct: 416 IDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDH 475
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQ 115
V+ + +L ACS GLV++G+ FF+ MQ A +KP HYACMV + + Q
Sbjct: 476 VTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQ 526
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + +I+ A ++FD +PV+D+ SW TLI GY G AI++++ M + +G++
Sbjct: 314 VDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPI 373
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + VL A S G +++G + M A ++K
Sbjct: 374 QGTFVSVLPAYSHLGALQQGTR----MHALSIK 402
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ K+FD + +D +W ++I G+ G++ A+ +F MR+ GV
Sbjct: 212 IDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDV 271
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
++ + + +A + G + G+
Sbjct: 272 LTLLSLASAIAQCGDICGGRS 292
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY++ GR++ A +F+R+ K+ SW LI GYG G+ + A+ +FE M +G+
Sbjct: 361 VDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNH 420
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GL E+G + F M + VKP HYACMV LL
Sbjct: 421 VTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELL 466
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG--VEY 63
+D Y++ G I+ A+ +FD++P K + W ++I Y + G + A++ + MR+ G +++
Sbjct: 260 IDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDH 319
Query: 64 YPVS 67
+ +S
Sbjct: 320 FTIS 323
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G + A K+FD +P KD ASW+T+I G+ G A LF M E+ + +
Sbjct: 162 HVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTF 221
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ A + GLV+ G++ R V
Sbjct: 222 TTMIRASAGLGLVQVGRQIHSCALKRGV 249
>gi|413938708|gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
Length = 488
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YTR G + A+ F + K+ W +LI G+ G+ + A+ LF MR+ G+E
Sbjct: 239 VSMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPENALRLFVEMRQVGIEPNG 298
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL+ACS GGLV++G K+FD M++ ++P HY C+V LL
Sbjct: 299 VTFVAVLSACSHGGLVDEGFKYFDLMRSMGIRPMIQHYGCLVDLL 343
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEYY 64
LD R G +D A ++F ++P +++ SW T+I G+ G VA++LF E G+
Sbjct: 137 LDALIRDGDLDAAWEVFVKMPQRNAVSWNTIISGFARNGWAPVAVDLFIEMTVAYGLAPD 196
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
+ +G ++A GL+ GK
Sbjct: 197 EATMVGFVSAVRDIGLLAIGK 217
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+++ + +IF+ + +D +W +I GYGM G+ AI F+ M E +
Sbjct: 544 IDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSAKPNG 603
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VL+AC+ GLV++GK F +MQ +V P HYACMV LL
Sbjct: 604 LTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVDLL 648
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G + +A +IF R+P +D +W TLI Y G A++L++ M + ++
Sbjct: 444 IDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNS 502
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+ + VL+ACS +E+G+K +
Sbjct: 503 ATLVSVLSACSHLASLEEGEKVHN 526
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+++ + +IF+ + +D +W +I GYGM G+ AI F+ M E +
Sbjct: 911 IDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNG 970
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VL+AC+ GLV++GK F +MQ +V P HYACMV LL
Sbjct: 971 LTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVDLL 1015
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G + +A +IF R+P +D +W TLI Y G A++L++ M + ++
Sbjct: 811 IDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNS 869
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+ + VL+ACS +E+G+K +
Sbjct: 870 ATLVXVLSACSHLASLEEGEKVHN 893
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
L Y + G + LA K F R+ ++ +W ++ GYG +G + I LF M+ G+E
Sbjct: 710 LSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIE 766
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRI+ A FD++ +D SW +I GY M G A+NLF+ M+ +
Sbjct: 481 IDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNK 540
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL+ACS GL+ KG+ F+ M ++KP HY CMV+LL
Sbjct: 541 LTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLL 586
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ + K+F+ LP ++ +W T+I+GY LG+ + A+NLF M E ++
Sbjct: 380 MDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTE 439
Query: 66 VSHIGVLTACSLGGLVEKG 84
V++ VL A + +E G
Sbjct: 440 VTYSSVLRASASLAALEPG 458
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y ++G I A ++F+ +P D W +I Y A++LF MR+ V
Sbjct: 279 LELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNN 338
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL AC+ ++ GK+
Sbjct: 339 FTFASVLQACASSVSLDLGKQ 359
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+ G +D+A +FD + KD SW ++ Y + ++ LF MR G +
Sbjct: 178 IDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNN 237
Query: 66 VSHIGVLTAC 75
+ G L +C
Sbjct: 238 FTISGALKSC 247
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+FY ++ + A+K+FD +P ++ S++TL GY + A++ + ++G E P
Sbjct: 77 LNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNP 136
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G I+LA IF+ +P K+ +W ++I + M G+ A+ LFE MR +GVE
Sbjct: 345 IDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNE 404
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +L AC GLV +G+ F M Q ++P HY CMV LL
Sbjct: 405 VTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLL 450
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R + ++A IFD +P KD SW +I GY + + A++LF M+E G+ V+
Sbjct: 247 YARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTM 306
Query: 69 IGVLTACSLGGLVEKGK 85
+ V++AC+ G ++K K
Sbjct: 307 LSVISACANLGSLDKAK 323
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I+ AN +F + KD SW T+I GY G + A+ FE+M+ +G++ +
Sbjct: 449 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATM 508
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ VL+ACS GLV+KG+++F M Q V+P HYACMV LL
Sbjct: 509 VAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLL 551
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +D A ++FDR+P K+ SW L+ Y +L+ A LF RE+
Sbjct: 159 LSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF-GSRENWAL--- 214
Query: 66 VSHIGVLTACSLGGLVEKGK-----KFFDEMQARNVKPTET 101
V C LGG V+K K +FFD M+ R+V T
Sbjct: 215 -----VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNT 250
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G +LA +FD +P +D SW +I GY L A LFE M E V S
Sbjct: 100 YLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDV----CSW 155
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
+L+ + G V+ ++ FD M +N
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPEKN 182
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ID A ++FD PV D +W ++ GY ++ A LF+ M E VS
Sbjct: 255 YAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERN----EVSW 310
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+L G VE K+ FD M RNV T
Sbjct: 311 NAMLAGYVQGERVEMAKELFDVMPCRNVSTWNT 343
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + +I A + FD + V+D SW T+I GY GE+D A LF+ PV
Sbjct: 224 FVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDES--------PVHD 275
Query: 69 IGVLTACSLG----GLVEKGKKFFDEMQARN 95
+ TA G +VE+ ++ FD M RN
Sbjct: 276 VFTWTAMVSGYIQNRMVEEARELFDRMPERN 306
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G+I A +FD++P +D SW +I GY G A+ LF M +G S
Sbjct: 348 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSF 407
Query: 69 IGVLTACSLGGLVEKGKKF 87
L+ C+ +E GK+
Sbjct: 408 SSALSTCADVVALELGKQL 426
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + R+++A ++FD +P ++ ++W T+I GY G++ A NLF+ M + PVS
Sbjct: 317 YVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRD----PVSW 372
Query: 69 IGVLTACSLGGLVEKGKKFF 88
++ S G + + F
Sbjct: 373 AAMIAGYSQSGHSYEALRLF 392
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y RTGR A ++F R+P S S+ +I GY GE ++A LF+ M E + + V
Sbjct: 69 YMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMI 128
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
G + +LG K ++ F+ M R+V
Sbjct: 129 KGYVRNRNLG----KARELFERMPERDV 152
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + ++ A ++FDR+P ++ SW ++ GY +++A LF+ M V +
Sbjct: 286 YIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNT-- 343
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
++T + G + + K FD+M R+
Sbjct: 344 --MITGYAQCGKISEAKNLFDKMPKRD 368
>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 769
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +IFD + D SW TLI+GY G + A+ LF M+ G+E
Sbjct: 512 IDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNH 571
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
V+ +GVLTACS GLVE+G K + MQ + + PT+ H +C+V LL +
Sbjct: 572 VTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLAR 619
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
D Y R G +D A ++F+++ D+ASW +I G G D A+++F MR G
Sbjct: 310 DMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSG 363
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 51/110 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A ++FD +P ++ S+ ++I GY G+ AI L+ M + +
Sbjct: 106 LSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQ 165
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
+ ++ AC+ G V GK+ ++ ++ + +++NQ
Sbjct: 166 FAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQ 215
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R ++ A+K+F +P KD SW ++I G+ LG A++ + M GV ++P +
Sbjct: 210 YVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV-FHPNEY 268
Query: 69 I--GVLTACS 76
I L ACS
Sbjct: 269 IFGSSLKACS 278
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++LA ++F R+P +D SW ++ILG+ GE+ A+ F M R + +
Sbjct: 273 VDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPN 332
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ +GVL+AC+ GGLV +G+++FD M +KP HY C+V LL +
Sbjct: 333 AITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLAR 381
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
+ FY R+D A +FDR+ + SW +I + GE D A+NLF M++
Sbjct: 170 VHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQK 222
>gi|218192520|gb|EEC74947.1| hypothetical protein OsI_10926 [Oryza sativa Indica Group]
Length = 469
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD++P + + +W ++I G G A+ LF+ M DG +
Sbjct: 264 VDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDH 323
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ VLTACS GG+VE GK + MQ +V+P HYACMV+LL
Sbjct: 324 LTFTAVLTACSYGGMVEVGKILYRAMQVEYSVEPRLEHYACMVHLL 369
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++LA ++F R+P +D SW ++ILG+ GE+ A+ F M R + +
Sbjct: 259 VDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPN 318
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ +GVL+AC+ GGLV +G+++FD M +KP HY C+V LL +
Sbjct: 319 AITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLAR 367
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
+ FY R+D A +FDR+ + SW +I + GE D A+NLF M++
Sbjct: 170 VHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQK 222
>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Brachypodium distachyon]
Length = 1054
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 66/105 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ GRID A+K+F+ + K+ SW ++I GY G + A+ +FE M+ +G
Sbjct: 722 LDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDH 781
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLV++G +F+ M+ + P HY+C++ LL
Sbjct: 782 VTFVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLL 826
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
++ Y + R+ A ++FD + +++ SW L+ GY + G D A +F+AM +G E+
Sbjct: 98 VNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSR 157
Query: 65 --PVSHIGVLTACSLGG 79
P + VL AC G
Sbjct: 158 PTPFTFGSVLRACQDAG 174
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID A+++F L +D SW T+I G + A+ + MR+ +
Sbjct: 417 VNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSN 476
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ I L++C+ L+ G++
Sbjct: 477 FAAISGLSSCASLRLLTAGQQ 497
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED--GVEYYPVSHI--GVLT 73
A ++FD PV+D +W L+ Y G + LF AM D +E P H ++T
Sbjct: 218 AQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLIT 277
Query: 74 ACSLGGLVEKGKKFFDEMQARNVK 97
A SL D++ AR +K
Sbjct: 278 ATSLSSC---SSGVLDQVFARVLK 298
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID A +F + KD S+ +I+G M G+ A++LF M + G+E
Sbjct: 348 VDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDE 407
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ +GVLTACS GLVE+G+K+F++M N++P HY CMV LL
Sbjct: 408 VTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLL 453
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+F +PVK+ SW ++I G G+ ++ +F M+ GV+
Sbjct: 247 VDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 306
Query: 66 VSHIGVLTACSLGGLVEKGK---KFFDEMQAR 94
V+ + VL +C+ G++E GK + D Q R
Sbjct: 307 VTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 338
>gi|449453543|ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449515851|ref|XP_004164961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 308
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + +A K+FD +P ++ SW L+ GYG+ G LFE M E+G +
Sbjct: 151 ITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFRLFERMVEEGQKPDE 210
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ +LTACS GGL+EKGK++F M+ +++P HY CMV LL + Q
Sbjct: 211 LTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCMVDLLGRSGQ 261
>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
Length = 690
Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A + F +P ++ SW +I G G G AI+LFE M+E+GVE
Sbjct: 350 VDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADE 409
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+++ +L+ACS GLV++ +++F + Q R ++P HYACMV LL
Sbjct: 410 VAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLL 455
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ +A ++FD +P ++ SW L++G+ GE + LF MR G
Sbjct: 46 IDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNE 105
Query: 66 VSHIGVLTACSLG 78
+ L AC G
Sbjct: 106 FTLSATLKACGGG 118
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + R+ +A ++FD L +++ W T+I+G+ G++ A+ LF GV
Sbjct: 249 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 308
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + LVE+GK+
Sbjct: 309 HVLSSVVAVFADFALVEQGKQ 329
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVSHIGVLTACS 76
A ++FD +P ++ A+W ++I GY G+ ++ +F M R + + +L ACS
Sbjct: 157 ARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACS 216
Query: 77 LGGLVEKGKKFFDEMQARNVKP 98
G +G + M R V P
Sbjct: 217 GLGAAREGAQVHAAMAVRGVSP 238
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID A +F + KD S+ +I+G M G+ A++LF M + G+E
Sbjct: 370 VDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDE 429
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ +GVLTACS GLVE+G+K+F++M N++P HY CMV LL
Sbjct: 430 VTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLL 475
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+F +PVK+ SW ++I G G+ ++ +F M+ GV+
Sbjct: 269 VDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 328
Query: 66 VSHIGVLTACSLGGLVEKGK---KFFDEMQAR 94
V+ + VL +C+ G++E GK + D Q R
Sbjct: 329 VTLVAVLNSCANLGVLELGKWVHAYLDRNQIR 360
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y I A K+FD P +D SW T+I GY +G + LF M + ++
Sbjct: 167 MRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADG 226
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ + VL++C+ G + G+K
Sbjct: 227 MTLVIVLSSCARLGDLRLGRKL 248
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A +FD +P K+ SW LI GYG G A+ +FE M +G+
Sbjct: 375 VDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNH 434
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GL ++G + F+ M + +KP HYACM+ LL
Sbjct: 435 VTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELL 480
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ A +FD++P K + W ++I GY + G + A++++ MR+ GV+
Sbjct: 274 IDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDN 333
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ C+ +E K+
Sbjct: 334 FTFSIIIRICARLASLEHAKQ 354
>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 595
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +DLA +FD +PV+ SW ++I+GYG+ G D A+ LF M + G +
Sbjct: 346 LTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPND 405
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
+ I VL+AC+ G+V +G +FD MQ ++P HY CMV LL +
Sbjct: 406 ATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLAR 453
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A K+F+ +P +D SW LI GY +G+LD A LFE + E
Sbjct: 180 IDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDA---- 235
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA--RNV 96
VS ++ C+ G V KFFD M A RNV
Sbjct: 236 VSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNV 268
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D R G + LA K FDR+P V++ SW +++ + + + LF M E G E
Sbjct: 242 IDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVE-GREA 300
Query: 64 YP--VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
P + + VLTAC+ G + G +++ N+KP C++ + K
Sbjct: 301 VPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAK 351
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++LA ++F R+P +D SW ++ILG+ GE+ A+ F M R + +
Sbjct: 273 VDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPN 332
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ +GVL+AC+ GGLV +G+++FD M +KP HY C+V LL +
Sbjct: 333 AITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLAR 381
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
+ FY R+D A +FDR+ + SW +I + GE D A+NLF M++
Sbjct: 170 VHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQK 222
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G I+ +N++FD + +D SW L+ GY G+ + I+LFE M G++
Sbjct: 413 ITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDA 472
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ I VL+ACS GLVE+G+++F+ M + + P HY CM+ L
Sbjct: 473 VTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLF 518
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + A +F R+ K+ SW +++GYG G + A+ +F M+ +G+E
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 372 FTLGSVISSCANLASLEEGAQF 393
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R+G + + ++F + +DS SW T+I G G A++LF MR++G+ +
Sbjct: 216 RSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGS 275
Query: 71 VLTACSLGGL--VEKGKK 86
VLTAC GGL +++GK+
Sbjct: 276 VLTAC--GGLRALKEGKE 291
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV-EYY 64
L Y+++G + +IF +P +D SW +LI GY G + A+ + +M +DGV
Sbjct: 78 LSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLN 137
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM 91
++ +L S G V+ G++ ++
Sbjct: 138 RITFSTMLLLVSSQGCVDLGRQIHGQI 164
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEY 63
++ Y++ G I A +FD++P +S SW T++ Y G+L +F M DGV +
Sbjct: 47 INAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSW 105
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I+ AN +F + KD SW T+I GY G +VA+ FE+M+ +G++ +
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ VL+ACS GLV+KG+++F M Q V P HYACMV LL
Sbjct: 514 VAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLL 556
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G +LA K+FD +P +D SW +I GY L A LFE M E V S
Sbjct: 105 YLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDV----CSW 160
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN-----------VKPTETHYACMVY 108
+L+ + G V+ + FD M +N V+ ++ ACM++
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++G+ID A ++FD PV+D +W ++ GY ++ A LF+ M E VS
Sbjct: 260 YAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERN----EVSW 315
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+L G +E K+ FD M RNV T
Sbjct: 316 NAMLAGYVQGERMEMAKELFDVMPCRNVSTWNT 348
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +D A +FDR+P K+ SW L+ Y +++ A LF++ RE+
Sbjct: 164 LSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS-RENWAL--- 219
Query: 66 VSHIGVLTACSLGGLVEKGK-----KFFDEMQARNVKPTET 101
V C LGG V+K K +FFD M R+V T
Sbjct: 220 -----VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNT 255
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G+I A +FD++P +D SW +I GY G A+ LF M +G S
Sbjct: 353 YAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 412
Query: 69 IGVLTACSLGGLVEKGKKF 87
L+ C+ +E GK+
Sbjct: 413 SSALSTCADVVALELGKQL 431
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + R+++A ++FD +P ++ ++W T+I GY G++ A NLF+ M + PVS
Sbjct: 322 YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRD----PVSW 377
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQ 92
++ S G + + F +M+
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQME 401
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + +I A + FD + V+D SW T+I GY G++D A LF+ PV
Sbjct: 229 FVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE--------SPVQD 280
Query: 69 IGVLTACSLG----GLVEKGKKFFDEMQARN 95
+ TA G +VE+ ++ FD+M RN
Sbjct: 281 VFTWTAMVSGYIQNRMVEEARELFDKMPERN 311
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y RTGR + A ++F R+P S S+ +I GY GE ++A LF+ M E + + V
Sbjct: 74 YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
G + +LG K ++ F+ M R+V T
Sbjct: 134 KGYVRNRNLG----KARELFEIMPERDVCSWNT 162
>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
Length = 521
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I+ A ++FD++ K+ SW ++I GYG G + A+ LF M+E +E
Sbjct: 315 LDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNY 374
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G L+ACS GLV+KG + F+ MQ ++KP HYAC+V L+
Sbjct: 375 VTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLM 420
>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Brachypodium distachyon]
Length = 707
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A + F +P ++ SW +I G G G AI++FE MR +GVE
Sbjct: 358 IDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDE 417
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+++ +L+ACS GLVE+ +++F ++ R ++P HYACMV LL
Sbjct: 418 VAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLL 463
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR 57
+D Y + G + +A ++F +P ++ SW L++G+ G+ + L AMR
Sbjct: 46 IDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMR 97
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Query: 6 LDFYTRTG-RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-----EAMRED 59
LD Y + + +A ++F+RL K++ W T+I+G+ G++ A+ LF +R D
Sbjct: 256 LDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRAD 315
Query: 60 GVEYYPVSHIGVLTACSLGGLVEKGKK 86
G + S +GV + LVE+G++
Sbjct: 316 G--HVLSSVVGVFADFA---LVEQGRQ 337
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM---REDGVEYY 64
Y++ GRI A ++FD ++ +W +I GY G ++ +F M R++ ++
Sbjct: 150 LYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQ 209
Query: 65 P--VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
P + +L AC G +G + M R V
Sbjct: 210 PDEFTFASLLKACGSLGAAREGAQVHAAMVIRGV 243
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A +FD +P K+ SW LI GYG G A+ +FE M +G+
Sbjct: 375 VDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNH 434
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GL ++G + F+ M + +KP HYACM+ LL
Sbjct: 435 VTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELL 480
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ A +FD++P K + W ++I GY + G + A++++ MR+ GV+
Sbjct: 274 IDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDN 333
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ C+ +E K+
Sbjct: 334 FTFSIIIRICARLASLEHAKQ 354
>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I+ A ++FD++ K+ SW ++I GYG G + A+ LF M+E +E
Sbjct: 315 LDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNY 374
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G L+ACS GLV+KG + F+ MQ ++KP HYAC+V L+
Sbjct: 375 VTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLM 420
>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g28690, mitochondrial; Flags: Precursor
gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I+ A ++FD++ K+ SW ++I GYG G + A+ LF M+E +E
Sbjct: 315 LDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNY 374
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G L+ACS GLV+KG + F+ MQ ++KP HYAC+V L+
Sbjct: 375 VTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLM 420
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A +FD +P K+ SW LI GYG G A+ +FE M +G+
Sbjct: 375 VDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNH 434
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GL ++G + F+ M + +KP HYACM+ LL
Sbjct: 435 VTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELL 480
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ A +FD++P K + W ++I GY + G + A++++ MR+ GV+
Sbjct: 274 IDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDN 333
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ C+ +E K+
Sbjct: 334 FTFSIIIRICARLASLEHAKQ 354
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A+++FD + + SW +I G GM G++D AI+LF M + ++
Sbjct: 544 IDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPND 603
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + +L+ACS G VE+GK +F+ M+ V+P H+ACMV LL
Sbjct: 604 ITFMNILSACSHSGYVEEGKFYFNSMKNFEVEPNLEHFACMVDLL 648
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +DLA IFDR+ K +W ++I G+ +G AI LF+ M + ++
Sbjct: 443 IDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNE 502
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V+ + + ACS G +EKGK ++ A VK
Sbjct: 503 VTFLTAIQACSHMGHLEKGKWLHHKLIAYGVK 534
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + A K+FD + +D SW ++I Y GE + +F + VE
Sbjct: 141 LGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDS 200
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + + AC G + K
Sbjct: 201 VTMLSIAGACGELGFLRLAKS 221
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR D+A KIF+ L K+ ++W LI M G +++ FE M+ G +
Sbjct: 230 IDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPND 289
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVLTACS GGLV++G++ F M + V+P HY CMV +L
Sbjct: 290 ITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDML 335
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A ++FD +P ++ SW T++ GY GELDVA +F+ M G V+
Sbjct: 34 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNV--VTW 91
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++T + GL+ +K FDEM RN+
Sbjct: 92 NSMVTGFARHGLLPLARKMFDEMPVRNL 119
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G + LA K+FD +PV++ SW ++ GY + ++D A LF+ M E V VS
Sbjct: 98 FARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDV----VSW 153
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTE 100
+++ + G + + F MQ NV+P E
Sbjct: 154 TCMISGYAQAGRYQDTLELFRAMQTESNVQPNE 186
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A+++FD + + +SW +I G+ M G+ + A +LF MR+ G+E
Sbjct: 350 IDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDD 409
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M Q + P HY CM+ LL
Sbjct: 410 ITFVGLLSACSHSGMLDLGRHIFSSMTQDYKITPKLEHYGCMIDLL 455
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A ++F L KD+ SW TLI G+ + A+ LF+ M G
Sbjct: 242 VVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSG 301
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + VL+AC+ G ++ G+
Sbjct: 302 ESPNDVTMLSVLSACAHLGAIDIGR 326
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEYY 64
+ Y + GR++ A+K+FDR + S+ LI GY G A LF E + +D V +
Sbjct: 115 ISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWN 174
Query: 65 PVSHIGVLTACSLGGLVE-----KGKKFFDEMQARNVKPTET 101
+ + G VE + + + EM NVKP E+
Sbjct: 175 AM----------ISGYVETFNYKEALELYKEMVKTNVKPDES 206
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G A K+FD + VKD SW +I GY A+ L++ M + V+ +
Sbjct: 149 YASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTM 208
Query: 69 IGVLTACSLGGLVEKGKK 86
+ V++AC+ +E G++
Sbjct: 209 VTVVSACAQSSNIELGRQ 226
>gi|222624644|gb|EEE58776.1| hypothetical protein OsJ_10296 [Oryza sativa Japonica Group]
Length = 419
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD++P + + +W ++I G G A+ LF+ M DG +
Sbjct: 214 VDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDH 273
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ VLTACS GG+VE GK + MQ V+P HYACMV+LL
Sbjct: 274 LTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLL 319
>gi|115452179|ref|NP_001049690.1| Os03g0271300 [Oryza sativa Japonica Group]
gi|113548161|dbj|BAF11604.1| Os03g0271300, partial [Oryza sativa Japonica Group]
Length = 484
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD++P + + +W ++I G G A+ LF+ M DG +
Sbjct: 279 VDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDH 338
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ VLTACS GG+VE GK + MQ V+P HYACMV+LL
Sbjct: 339 LTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLL 384
>gi|108707417|gb|ABF95212.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 469
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD++P + + +W ++I G G A+ LF+ M DG +
Sbjct: 264 VDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDH 323
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ VLTACS GG+VE GK + MQ V+P HYACMV+LL
Sbjct: 324 LTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLL 369
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 66/107 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A +FD + KD+ +W +I+G+ + G ++ A+ LF M E V
Sbjct: 319 IDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNN 378
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ IGVL+AC+ GLVE G++++ MQ +KP+ +Y CMV LL +
Sbjct: 379 VTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCR 425
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L+ Y + ++ LA +FD + K+ +W ++ GY +G ++ A+ LF M+ GVE
Sbjct: 217 LNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPD 276
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
V+ + V++AC+ G ++ GK
Sbjct: 277 EVTMVSVISACAKAGALDLGK 297
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 66/107 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A +FD + KD+ +W +I+G+ + G ++ A+ LF M E V
Sbjct: 270 IDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNN 329
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ IGVL+AC+ GLVE G++++ MQ +KP+ +Y CMV LL +
Sbjct: 330 VTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCR 376
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L+ Y + ++ LA +FD + K+ +W ++ GY +G ++ A+ LF M+ GVE
Sbjct: 168 LNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPD 227
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
V+ + V++AC+ G ++ GK
Sbjct: 228 EVTMVSVISACAKAGALDLGK 248
>gi|147846491|emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
Length = 1007
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I L+ K FD++P K+ SW +I GM G A+ L M+ G++
Sbjct: 495 LDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNX 554
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ + VL+ACS GGLVE+G FF+ M Q V+P HY+CMV +L +
Sbjct: 555 VTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLXR 602
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I +D Y++ I+LA K+FDRL KD+ SW +I G+ G+ D AI LF+ M +
Sbjct: 389 VINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQ 448
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
+ V+ + +L A S+ +++ K
Sbjct: 449 EKPNGVTILSLLEAFSVSADLKRSK 473
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
DFY +TG +D A +FD + +DS SW +I G+ G D + F R E
Sbjct: 92 DFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFRQARVIAFEPNVS 151
Query: 67 SHIGVLTACSLGGLVEKGKK 86
+ + + AC G +E+G K
Sbjct: 152 TLVLAIHACRSLGAMEEGLK 171
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYYPVSHIGVLT 73
++ A ++FD + +D SW +I GY GE +A+ LF M + +E ++ + VL
Sbjct: 200 MERAEELFDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLK 259
Query: 74 ACSLGGLVEKGKK 86
AC+ G + G+
Sbjct: 260 ACANTGDISMGRS 272
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ + A K F+ +P +++ SW ++I G + A++LF +M + G
Sbjct: 293 IDMYSKXDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADE 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
V+ + +L +C K F D Q +
Sbjct: 353 VTLVNLLQSC---------KYFVDPFQCK 372
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G + AI+ F MR G+E
Sbjct: 539 VDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDE 598
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
S +L ACS GL+ +G KFF+ M+ V+P HYAC+V LL +
Sbjct: 599 SSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLAR 646
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A +F ++PVKD SW T+I GY + A+ LF M++ ++ P
Sbjct: 439 INMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK---QFKP 495
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
++ VL AC+ ++KG++ + R ++ H AC
Sbjct: 496 DDITMACVLPACAGLAALDKGREIHGHILRRGY-FSDLHVAC 536
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
LD Y++ G ++ A ++F ++ SW ++I Y G AI LF+ M+ GV +
Sbjct: 338 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDI 397
Query: 64 YPVSHIGVLTACSLGGLVEKGK 85
Y V+ I + AC+ ++KG+
Sbjct: 398 YTVTSI--VHACACSSSLDKGR 417
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A+ +FD L D SW ++I G + G + +F M GVE +
Sbjct: 240 YFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTL 299
Query: 69 IGVLTACSLGGLVEKGK 85
+ VL AC+ G + G+
Sbjct: 300 VSVLVACANIGNLSLGR 316
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG ID K+F+R+ +D+ SW +I+G+ G A++LFE M
Sbjct: 1174 VDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDS 1233
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+AC GLVE+G+++F M + + P++ HY CM+ LL
Sbjct: 1234 VTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLL 1279
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + D + +IF+ P +D W ++I G G+ + ++LF+ M++ G++
Sbjct: 528 IDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADS 587
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113
V+ +G L +C G V G+ +F M ++ P HY CM+ LL K+
Sbjct: 588 VTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKH 635
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
GRI A ++F+ + ++ SW ++ GY +L A+ LF+ MR++ E+ ++ VL
Sbjct: 332 GRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVL 391
Query: 73 TACSLGGLVEKGKKFFDEMQARNVK 97
+AC+ G+++ GK +E+ A +K
Sbjct: 392 SACT--GILDIGKG--EEVHAFAIK 412
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR A +FDR+ + S +LI GY ++ A +F M E V +
Sbjct: 1036 VDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWN 1095
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
V ++ A + G E+ + F ++ +V PT Y
Sbjct: 1096 V----LIAAYAQNGEEEEALRLFVRLKRESVWPTHYTY 1129
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + A ++FD +P++D SW +I G A++LF M G+ + VL
Sbjct: 99 GSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVL 158
Query: 73 TACS 76
+ C+
Sbjct: 159 SCCA 162
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + + A ++F+ +P ++ SW +LI Y G + A+ LF +M + G
Sbjct: 934 LDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDE 993
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V+ V++AC+ +G+ ++ AR VK
Sbjct: 994 VTLASVMSACAGLAADREGR----QVHARVVK 1021
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R+ ++ A +F ++ K+ +W LI Y GE + A+ LF ++ + V ++
Sbjct: 1070 YARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTY 1129
Query: 69 IGVLTAC 75
VL AC
Sbjct: 1130 GNVLNAC 1136
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR D+A KIF+ L K+ ++W LI M G +++ FE M+ G +
Sbjct: 368 IDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPND 427
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVLTACS GGLV++G++ F M + V+P HY CMV +L
Sbjct: 428 ITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDML 473
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A ++FD +P ++ SW T++ GY GELDVA +F+ M G V+
Sbjct: 172 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNV--VTW 229
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++T + GL+ +K FDEM RN+
Sbjct: 230 NSMVTGFARHGLLPLARKMFDEMPVRNL 257
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G + LA K+FD +PV++ SW ++ GY + ++D A LF+ M E V VS
Sbjct: 236 FARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDV----VSW 291
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTE 100
+++ + G + + F MQ NV+P E
Sbjct: 292 TCMISGYAQAGRYQDTLELFRAMQTESNVQPNE 324
>gi|218200446|gb|EEC82873.1| hypothetical protein OsI_27751 [Oryza sativa Indica Group]
Length = 678
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+++ A +F+R+P+++ SW LI GYG G AI +FE + +G+
Sbjct: 358 VDLYCKWGQMEDARNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNH 417
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQKAR 118
V+ + VL AC G VE+GK+ F M Q + KP HYAC++ L + Q+ R
Sbjct: 418 VTFLAVLNACRFSGFVEEGKRIFQLMTQNQRTKPRAMHYACIIEL---FGQQGR 468
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A ++FD +P K +W +++ Y + G + A++L+ +M E GV+
Sbjct: 257 IDMYNKCGQLDEARRVFDGMPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQ 316
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
+ +L S GL+E K+ + R + +V L K+ Q
Sbjct: 317 FTFSTMLRVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGQ 366
>gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
Length = 841
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I+ A ++FD++ K+ SW ++I GYG G + A+ LF M+E +E
Sbjct: 636 LDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNY 695
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G L+ACS GLV+KG + F+ MQ ++KP HYAC+V L+
Sbjct: 696 VTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLM 741
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ ++++F+ + KD +W L+ GY G+ + I LFE+M G++ V+
Sbjct: 420 LYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVT 479
Query: 68 HIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
IGVL+ACS GLVEKG + F+ M + P + HY CM+ L
Sbjct: 480 FIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLF 523
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
P +D Y++ G I A K+FD LP K+ + TLI+G G ++ + LF MRE
Sbjct: 182 SPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERD-- 239
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+S ++T + GL F EM+ N++
Sbjct: 240 --SISWTSMITGFTQNGLDRDAIDIFREMKLENLQ 272
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I A +F ++ K+ SW +++GYG G + A+ F M++ G+E
Sbjct: 317 VDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDD 376
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 377 FTLGSVISSCANLASLEEGAQF 398
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEY 63
Y + G I A K+FD++P + SW T++ Y LG + LF+AM R DGV +
Sbjct: 54 YAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSW 109
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDG 60
L Y++ GR+ +FD +P +D SW +LI GY G + ++ + M + DG
Sbjct: 82 LSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDG 137
>gi|255564460|ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537522|gb|EEF39147.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 488
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A++ FD++P +D SW +LILGYG+ G + VA+ LF+ M G++
Sbjct: 282 VHMYIKCGMLAYAHRFFDKMPERDVFSWSSLILGYGLSGNVSVALCLFDQMHMRGIKPND 341
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ +G+L+AC GGLVE+ + +F MQ + HYA +V L +
Sbjct: 342 VTFLGILSACGHGGLVEQARSYFKMMQNYGLVAELRHYATIVDCLAR 388
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG--VEYYPV 66
Y G + A +FD + +DS W L+ GY GE + + +F M ++ V+ V
Sbjct: 182 YVTFGNVSNARVVFDEMAKRDSVLWTALLSGYAQNGEPKLGLQVFREMVDNSTRVKLDWV 241
Query: 67 SHIGVLTACSLGGLVEKGKK 86
+ +L C G ++ GK
Sbjct: 242 VMVSLLLVCGQLGSLKHGKS 261
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ A IF+ +P ++ SW +I GY M GE + A+ LF +M+ +
Sbjct: 334 VDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDL 393
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ VL ACS G E+G+ +F+EMQ ++ + P HYACMV LL
Sbjct: 394 VTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLL 439
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR D ++FD D AS L+ G ++ A+ LF G+E
Sbjct: 198 IDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNV 257
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS ++ C G + F EMQ+ ++P C++
Sbjct: 258 VSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVL 299
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R G A + D +P + W LI + G+ + A L E MR DGVE
Sbjct: 62 LHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNV 121
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
++ G+++ + G M P T +C
Sbjct: 122 ITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSC 161
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + A K+FDR+ KD +W +++ + G A+ FE MR+ GV
Sbjct: 308 LDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 367
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + +LTACS GGLV++GK++FD M+ N++P HY +V LL
Sbjct: 368 ITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLL 412
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R GR+D+A +FD+L K+ SW LI G+ G+ + + +F M+ +G E
Sbjct: 207 LDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATH 266
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ V +A + G +E+GK
Sbjct: 267 FTYSSVFSAIAGIGALEQGK 286
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y + G + A ++FD +P +D SW +LI GY D A+ L M
Sbjct: 106 IHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGM 156
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F+ +P ++ +W +I G + G A++ F M G+
Sbjct: 433 VDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDE 492
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL+AC GGLVE+G+K+F EM ++ NV P HY+CMV LL
Sbjct: 493 ITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLL 538
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD + K SW T++LGY G LDVA + + E V
Sbjct: 301 MDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSV---- 356
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
V +++ C ++ F EMQ R ++P
Sbjct: 357 VPWNAIISGCVQAKQGKEALALFHEMQIRTIEP 389
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + +A +F++ V+D +W ++I G G AI +++ M + V ++ IG++
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266
Query: 73 TACSLGGLVEKGKKF 87
++CS + GK+F
Sbjct: 267 SSCSQVQDLNLGKEF 281
>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50390, chloroplastic; Flags: Precursor
gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 701
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY++ GR+D A +FD+LP K+ SW L+ GY G A+ LFE M V
Sbjct: 367 VDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNH 426
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+AC+ GL E+G + F M + +KP HYACM+ LL
Sbjct: 427 VTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELL 472
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y++ G I+ A F+ +P K + +W +I GY + G + A+ L MR+ GV
Sbjct: 266 IDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGV 321
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A ++F + +D+ASW ++I G + G A++ F M E G
Sbjct: 389 VDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDD 448
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
++ IGVLTAC+ GGLVE+G+++FD M + ++P HY+C++ LL +
Sbjct: 449 ITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCR 496
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +D A IFD + K+ W +++ GY G LD A LFE P
Sbjct: 257 LDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFER--------SP 308
Query: 66 VSHIGVLTACSLG----GLVEKGKKFFDEMQARNVKP 98
V I + TA G L ++ K F +MQ + ++P
Sbjct: 309 VRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRP 345
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 35/126 (27%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+ Y G++++A K+FD +P +D SW LI Y + + AI +F M RE ++
Sbjct: 156 MGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKAD 215
Query: 65 PVSHIGVLTACSL----------------------------------GGLVEKGKKFFDE 90
+ + L+ACS+ G V+K + FDE
Sbjct: 216 EATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCVDKARAIFDE 275
Query: 91 MQARNV 96
M +NV
Sbjct: 276 MGNKNV 281
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + A K+FDR+ KD +W +++ + G A+ FE MR+ GV
Sbjct: 308 LDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 367
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + +LTACS GGLV++GK++FD M+ N++P HY +V LL
Sbjct: 368 ITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLL 412
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R GR+D+A +FD+L K+ SW LI G+ G+ + + +F M+ +G E
Sbjct: 207 LDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATH 266
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ V +A + G +E+GK
Sbjct: 267 FTYSSVFSAIAGIGALEQGK 286
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y + G + A ++FD +P +D SW +LI GY D A+ L M
Sbjct: 106 IHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGM 156
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F+ +P ++ +W +I G + G A++ F M G+
Sbjct: 433 VDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDE 492
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL+AC GGLVE+G+K+F EM ++ NV P HY+CMV LL
Sbjct: 493 ITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLL 538
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD + K SW T++LGY G LDVA + + E V
Sbjct: 301 MDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSV---- 356
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
V +++ C ++ F EMQ R ++P
Sbjct: 357 VPWNAIISGCVQAKQGKEALALFHEMQIRTIEP 389
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + +A +F++ V+D +W ++I G G AI +++ M + V ++ IG++
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266
Query: 73 TACSLGGLVEKGKKF 87
++CS + GK+F
Sbjct: 267 SSCSQVQDLNLGKEF 281
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I A ++F LP ++S +W +I G + G AI F M ++ V
Sbjct: 354 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 413
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G+L+AC GGLVE+G+K+F +M ++ N+ P HY+CMV LL
Sbjct: 414 VTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLL 459
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G ++ A K+FD + K SW T+++GY G LD+A LF+ M + V V
Sbjct: 229 GNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDV---------VP 279
Query: 73 TACSLGGLVE--KGKK---FFDEMQARNVKPTE-THYACM 106
+GG V +GK+ F+EMQA N+ P E T +C+
Sbjct: 280 WNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCL 319
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G +D A K+FD+ V+D SW ++I GY G L+ A LF++M + VS ++
Sbjct: 200 GDLDGARKMFDKSCVRDLVSWNSMINGY--CGNLESARKLFDSMTNKTM----VSWTTMV 253
Query: 73 TACSLGGLVEKGKKFFDEMQARNVKP 98
+ GL++ K FDEM ++V P
Sbjct: 254 VGYAQSGLLDMAWKLFDEMPDKDVVP 279
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++G +D+A K+FD +P KD W +I GY A+ LF M+ + V+
Sbjct: 256 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 315
Query: 69 IGVLTACSLGGLVEKG 84
+ L+ACS G ++ G
Sbjct: 316 VSCLSACSQLGALDVG 331
>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Glycine max]
Length = 750
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ + +FD + KD W +I GYGM G + A+ +F+ M E V
Sbjct: 549 IDMYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNG 608
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
++ + +L+AC+ GLVE+GK F M++ +V P HY CMV LL +Y
Sbjct: 609 ITFLSLLSACAHAGLVEEGKYMFARMKSYSVNPNLKHYTCMVDLLGRYGN 658
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR---EDGVE 62
+ Y+R GR++LA K+FD +P +D +W LI+G+ GE + + + ED +
Sbjct: 145 VSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGVVEDDEK 204
Query: 63 YYPVSHIGVLTACSLGGLVEKGK 85
+ G AC G V +G
Sbjct: 205 PNAKTWEGGFLACGNLGAVSEGS 227
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G++ A +IF+ D SW TLI + + + + A+NLF M + +
Sbjct: 449 VEMYGKCGKMTFAWRIFNTSET-DVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNT 507
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ + VL+ACS +EKG++
Sbjct: 508 ATLVVVLSACSHLASLEKGER 528
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + LA +IF L W ++ GYG +GE + LF M+ G+
Sbjct: 348 LFMYCKFGMLSLAERIFP-LCQGSGDGWNFMVFGYGKVGENVKCVELFREMQWLGIHSET 406
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ + +C+ G V G+
Sbjct: 407 IGIASAIASCAQLGAVNLGRS 427
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+R+ ++ S+ ++I+G+ M G A+ LF+ M + ++
Sbjct: 316 IDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNR 375
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVLTACS G+VE+G++ F M + V P+E HYACMV LL
Sbjct: 376 VTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLL 421
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A+++FD LP+KD +W ++ GY A+ +FE M+ GV+ V+
Sbjct: 216 YAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTL 275
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+GV++AC+ G + D + PT
Sbjct: 276 VGVISACAQLGAAKYANWVRDVAEQSGFGPTSN 308
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +++FD + +D SW +LI+ Y +G ++ A LF+ + +
Sbjct: 182 IDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDM---- 237
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
V+ ++T + + + F+ MQA VK E
Sbjct: 238 VAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY ++G ID A K+F+ P K +W +++G M G + +N F M E G++
Sbjct: 311 VDFYAKSGCIDTAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDG 370
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
+S +GVL CS GGLV++ KK FDEM++ V+ HY CM LL +
Sbjct: 371 ISFLGVLVGCSHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLLAR 418
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G A +IFD +P++DS SW +LI GY + AI LF+ M +E
Sbjct: 210 VDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLEPDN 269
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
++ + L+AC+ G +EKGK+ D ++ ++
Sbjct: 270 IALVSALSACAQLGELEKGKQIHDYIKKNRIQ 301
>gi|357139595|ref|XP_003571366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Brachypodium distachyon]
Length = 674
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A +F+R+P ++ SW LI GYG G AI +FE + +G+
Sbjct: 344 VDLYCKWGRMEDARHVFERMPSRNLISWNALIAGYGYHGMGAHAIEMFERLIAEGIAPNH 403
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+++GVL AC G ++KGK+ F M Q KP HYAC++ L
Sbjct: 404 VTYLGVLNACRFSGFIDKGKRIFQLMAQNPKTKPRAMHYACVIELF 449
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+D A ++FD +P + +W T++ Y + G + A++L+ M E GV +
Sbjct: 243 VDMYSKCGRLDEARRVFDGMPWRSVVAWNTMLAAYSLHGCAEEAVDLYHDMCECGVVFDQ 302
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ +L S GL+E K+ +
Sbjct: 303 FTFSTMLGVFSRLGLLEHAKQIHASL 328
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A FDR+ K+ SW +I GYGM G A+ LF AM + GV
Sbjct: 329 IDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GL + G +F+ M+ R V+P HY CMV LL
Sbjct: 389 ITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLL 434
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM----REDGVEYY 64
Y+ G+++ A K+FD +P ++ SW ++I GY + G A++LF+ + +D +
Sbjct: 121 YSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMF 180
Query: 65 --PVSHIGVLTACS---LGGLVEKGKKF 87
+ + V++ACS GL E F
Sbjct: 181 LDSMGMVSVISACSRVAAKGLTESIHSF 208
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I A ++F LP ++S +W +I G + G AI F M ++ V
Sbjct: 382 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 441
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G+L+AC GGLVE+G+K+F +M ++ N+ P HY+CMV LL
Sbjct: 442 VTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLL 487
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+FD + K SW T+++GY G LD+A LF+ M + V
Sbjct: 250 MDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDV---- 305
Query: 66 VSHIGVLTACSLGGLVE--KGKK---FFDEMQARNVKPTE-THYACM 106
V +GG V +GK+ F+EMQA N+ P E T +C+
Sbjct: 306 -----VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCL 347
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++G +D+A K+FD +P KD W +I GY A+ LF M+ + V+
Sbjct: 284 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 343
Query: 69 IGVLTACSLGGLVEKG 84
+ L+ACS G ++ G
Sbjct: 344 VSCLSACSQLGALDVG 359
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G +D A K+FD+ V+D SW ++I GY G A+N + M+ +G++ V+ IGV+
Sbjct: 156 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 215
Query: 73 TACS 76
++C+
Sbjct: 216 SSCA 219
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A +FD + +D+ +W +I+G + G ++VA+ LF M E V
Sbjct: 272 IDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNN 331
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ IGVL+AC+ GLV +G++++ MQ +KP+ +Y CMV L +
Sbjct: 332 VTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCR 378
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L+ Y + + LA +FD + K+ A+W +I GY +G ++ A+ LF M+ V
Sbjct: 170 LNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPD 229
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
V+ + V++AC+ G ++ G+
Sbjct: 230 EVTMVSVISACAKAGALDLGR 250
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I A ++F LP ++S +W +I G + G AI F M ++ V
Sbjct: 339 IDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDE 398
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G+L+AC GGLVE+G+K+F +M ++ N+ P HY+CMV LL
Sbjct: 399 VTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLL 444
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G +D A K+FD+ V+D SW ++I GY G A+N + M+ +G++ V+ IGV+
Sbjct: 128 GDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVV 187
Query: 73 TACS 76
++C+
Sbjct: 188 SSCA 191
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 6 LDFYTRTGRIDLANK----------------IFDRLPVKDSASWITLILGYGMLGELDVA 49
+D Y + G ++ A K +FD +P KD W +I GY A
Sbjct: 222 MDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEA 281
Query: 50 INLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKG 84
+ LF M+ + V+ + L+ACS G ++ G
Sbjct: 282 LALFNEMQAMNINPDEVTMVSCLSACSQLGALDVG 316
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+++A K FDRL K+ SW ++ GYGM G A+ +F M G++
Sbjct: 342 VDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNY 401
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GL+++G +F++M+ +V+P HY+CMV LL
Sbjct: 402 ITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLL 447
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYY 64
+D Y + G I ++ K+FD + D SW +LI Y G A +LF M + G V Y
Sbjct: 240 MDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYN 299
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ VL AC+ G ++ GK D++
Sbjct: 300 AVTLSAVLLACAHSGALQIGKCIHDQV 326
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGY 40
+D Y++ G ++ A K+FD +P ++ SW ++I GY
Sbjct: 128 IDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGY 162
>gi|357150678|ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 491
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YTR G + A F + K+ W + I G+ G D+A+ LF MRE G+E
Sbjct: 243 INMYTRCGSMTAAYLCFSSVTSKNVEHWTSAIGGFAAHGHPDMALRLFAEMRELGIEPND 302
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL ACS GGLV++G K+F+ M+ ++P+ HY C+V LL
Sbjct: 303 VTFVAVLNACSHGGLVDEGFKYFNMMRKMGIRPSIQHYGCLVDLL 347
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+ A K+FD +P SW L+ G+ G+LD A LF M E V VS
Sbjct: 113 YARHGRLADARKVFDGMPETTVVSWNVLLDGFVRAGDLDAAWELFVEMTERNV----VSW 168
Query: 69 IGVLTACSLGGLVEKGKKFFDEM 91
V+ + G ++ + F EM
Sbjct: 169 NTVMVGFARLGRAQEAVELFVEM 191
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
LD + R G +D A ++F + ++ SW T+++G+ LG A+ LF M
Sbjct: 141 LDGFVRAGDLDAAWELFVEMTERNVVSWNTVMVGFARLGRAQEAVELFVEM 191
>gi|242078125|ref|XP_002443831.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
gi|241940181|gb|EES13326.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
Length = 688
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A +F+R+P ++ SW LI GYG G D AI +FE + +GV
Sbjct: 358 VDLYCKWGRMEDARNVFERMPRRNLISWNALIAGYGYHGMGDKAIEMFERLIAEGVVPNH 417
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL AC GLV+KGK+ F M +KP HYAC++ L
Sbjct: 418 VTFLAVLNACRFSGLVDKGKRIFQLMTENLRMKPRAMHYACVIELF 463
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G ID A ++FD LP +W +++ Y + G + A+ L++ M V
Sbjct: 257 LDMYSKCGLIDEARRVFDGLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVAMDQ 316
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +L S GL+E K+
Sbjct: 317 FTFSTMLGVFSRLGLLEHAKQ 337
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A IFDR+ KD +W ++I+GYG+ G AI F+ M E ++ P
Sbjct: 248 IDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNP 307
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYL 109
V+ +G+L CS GLV++G K+F+ M ++ +KP HY C+V L
Sbjct: 308 VTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDL 352
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+ G + +A ++FD++P +D +W +I + G A+ + MR + V+ +
Sbjct: 150 YSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDIDGFTL 209
Query: 69 IGVLTACS-LGGL 80
+G++++C+ LG L
Sbjct: 210 VGLISSCAHLGAL 222
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR D+A KIF+ L K+ ++W LI M G +++ FE M+ G +
Sbjct: 368 IDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPND 427
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVLTACS GGLV++G++ F M + V+P HY CMV +L
Sbjct: 428 ITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDML 473
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A ++FD +P ++ SW T++ GY GELDVA +F+ M G V+
Sbjct: 172 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNV--VTW 229
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++T + GL+ +K FDEM RN+
Sbjct: 230 NSMVTGFARHGLLPLARKMFDEMPVRNL 257
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G + LA K+FD +PV++ SW ++ GY + ++D A LF+ M E V VS
Sbjct: 236 FARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDV----VSW 291
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTE 100
+++ + G + + F MQ NV+P E
Sbjct: 292 TCMISGYAQAGRYQDTLELFRAMQTESNVQPNE 324
>gi|115467784|ref|NP_001057491.1| Os06g0314100 [Oryza sativa Japonica Group]
gi|54291635|dbj|BAD62428.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113595531|dbj|BAF19405.1| Os06g0314100 [Oryza sativa Japonica Group]
gi|125597005|gb|EAZ36785.1| hypothetical protein OsJ_21122 [Oryza sativa Japonica Group]
Length = 992
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D ++R G I A KIFD KDS SW T+I Y M G+ A++LF M G
Sbjct: 782 VLNALIDMHSRCGSISFARKIFDISMEKDSVSWSTMINAYSMHGDGGSALDLFLMMVSSG 841
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ ++ + VL+ACS G +E+G+ F M A + P HYACMV LL
Sbjct: 842 IKPDDITFVSVLSACSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLL 892
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G++DL+ ++FD + +D SW +I GY + G L A + M++DG
Sbjct: 184 LDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNA 243
Query: 66 VSHIGVLTACSLGGLVEKG 84
S +G+++ S G+ + G
Sbjct: 244 SSLVGIVSMVSGLGVRDAG 262
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G++ + K+F + V+ SW T+I G+ G+ + F MR +++
Sbjct: 487 LAMYADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDL 546
Query: 66 VSHIGVLTACS 76
V+ I ++++ S
Sbjct: 547 VTLIALISSLS 557
>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Vitis vinifera]
Length = 742
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I L+ K FD++P K+ SW +I GM G A+ L M+ G++
Sbjct: 495 LDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNV 554
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ + VL+ACS GGLVE+G FF+ M Q V+P HY+CMV +L +
Sbjct: 555 VTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSR 602
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I +D Y++ I+LA K+FDRL KD+ SW +I G+ G+ D AI LF+ M +
Sbjct: 389 VINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQ 448
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
+ V+ + +L A S+ +++ K
Sbjct: 449 EKPNGVTILSLLEAFSVSADLKRSK 473
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFY +TG +D A +FD + +DS SW +I G+ G D + F R E
Sbjct: 91 LDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNV 150
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ + + AC G +E+G K
Sbjct: 151 STLVLAIHACRSLGAMEEGLKM 172
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYYPVSHIGVLT 73
++ A ++FD + +D SW +I GY GE +A+ LF M + +E ++ + VL
Sbjct: 200 MERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLK 259
Query: 74 ACSLGGLVEKGKK 86
AC+ G + G+
Sbjct: 260 ACANTGDISMGRS 272
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ + A K F+ +P +++ SW ++I G + A++LF +M + G
Sbjct: 293 IDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADE 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
V+ + +L +C K F D Q +
Sbjct: 353 VTLVNLLQSC---------KYFVDPFQCK 372
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A IFDR+ KD +W ++I+GYG+ G AI F+ M E ++ P
Sbjct: 248 IDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNP 307
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYL 109
V+ +G+L CS GLV++G K+F+ M ++ +KP HY C+V L
Sbjct: 308 VTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDL 352
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+ G + +A ++FD++P +D +W +I + G A+ + MR + V+ +
Sbjct: 150 YSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVDVDGFTL 209
Query: 69 IGVLTACS-LGGL 80
+G++++C+ LG L
Sbjct: 210 VGLISSCAHLGAL 222
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A +FD + +D+ +W +I+G + G ++VA+ LF M E V
Sbjct: 275 IDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNN 334
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ IGVL+AC+ GLV +G++++ MQ +KP+ +Y CMV L +
Sbjct: 335 VTFIGVLSACAHSGLVNEGRRYWSTMQELGIKPSMENYGCMVDLFCR 381
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L+ Y + + LA +FD + K+ A+W +I GY +G ++ A+ LF M+ V
Sbjct: 173 LNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPD 232
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
V+ + V++AC+ G ++ G+
Sbjct: 233 EVTMVSVISACAKAGALDLGR 253
>gi|414887716|tpg|DAA63730.1| TPA: hypothetical protein ZEAMMB73_596066 [Zea mays]
Length = 552
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A +FD + +D +W +++G+G+ G+ A++LF M EDGV
Sbjct: 346 MDMYFKCGCPSEAAAVFDAIRDRDVKAWTAMVMGFGVNGQPGSAVSLFYRMMEDGVAPNG 405
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +LTACS GGLV++GK+F + M R + P+ HY+C++ LL
Sbjct: 406 VTFLALLTACSHGGLVQEGKEFLETMVQRYGISPSPEHYSCVIDLL 451
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY +G + A ++F +P KD+ SW T+I GY +G++ A+ +F AMR GV+ V+
Sbjct: 152 FYCSSGSMADARRMFAEMPEKDAVSWNTMIGGYVNVGDVGTAVQMFTAMRWSGVD-VNVT 210
Query: 68 HIGVLTACSLGG 79
+ L C G
Sbjct: 211 VVITLIGCGWQG 222
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G I+ A+K+F +D + GY G++ A++L MR+ G+ +
Sbjct: 248 YVREGSIECASKVFHETARRDLVLCNCMADGYAKAGQIQEAMDLIGGMRQLGMRPSSGTL 307
Query: 69 IGVLTACSLGGLVEKGK 85
+GVL+AC G + G+
Sbjct: 308 VGVLSACGASGALAAGR 324
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +D A IF++LP +D SW ++I YG G+ A+ LFE M++ +
Sbjct: 451 LDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDK 510
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +L+ACS GLV++G +F++M A KP HY+C++ LL
Sbjct: 511 VTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLL 556
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +F +P + SW +I GY +G A+ +F MR+ GV+
Sbjct: 350 IDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDA 409
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
++ VL ACS ++EKGK+ +
Sbjct: 410 ITFTSVLPACSQLAVLEKGKEIHN 433
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +++A ++F+++ K+ SW ++I GY + G+ I LF M E+G+
Sbjct: 249 VDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTL 308
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +L ACS ++ GK
Sbjct: 309 TTLSSILMACSRSVNLQLGK 328
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + + A K+FD +P +D ASW +I Y G+ + A+ LFE M+ G + V+
Sbjct: 151 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTL 210
Query: 69 IGVLTACSLGGLVEKGKKFFDEM 91
V+++C+ +E+GK+ E+
Sbjct: 211 TTVISSCARLLDLERGKEIHMEL 233
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G +D +F+++P ++ SW ++I M GE A++LF M+++ VE
Sbjct: 386 INMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNE 445
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYN 114
V+ +GVL CS GLVE+GKK F M N+ P HY CMV L + N
Sbjct: 446 VTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRAN 495
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y GRI+ A +FD + +D +W T+I Y G +D A LFE M++ V
Sbjct: 153 MDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDE 212
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102
+ +++AC G + + ++ + +V+ +TH
Sbjct: 213 MILCNIVSACGRTGNMRYNRAIYEFLIENDVR-MDTH 248
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ GR+D A IFD+ KD W T+I Y A+ +FE M G++ VS
Sbjct: 288 YSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSM 347
Query: 69 IGVLTACSLGGLVEKGK 85
V++AC+ G+++K K
Sbjct: 348 FSVISACANLGILDKAK 364
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT+ G ID A+ +F LP K+ SW ++I GY G A+ LF M+++GV+
Sbjct: 651 ISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDW 710
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +G L+AC+ GL+++G F+ M+ N++P HY CMV L
Sbjct: 711 ITFVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLF 755
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ + + G +D A K+F+ LP +D +W ++I G + A NLF+ M E+GV+
Sbjct: 247 INMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDK 306
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
V+ + +L AC+ +E+GK+ M+
Sbjct: 307 VAFVSLLKACNHPEALEQGKRVHARMK 333
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT+ G ++ A ++F+ + ++ SW +I G+ G ++ A F M E G+E
Sbjct: 348 LSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNR 407
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ + +L ACS +++G++ D +
Sbjct: 408 VTFMSILGACSRPSALKQGRQIHDRI 433
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A +IFD +P KD SW L+ GY + A L E M +DGV+
Sbjct: 146 ISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDK 205
Query: 66 VSHIGVLTACSLGGLVEKGKKFF 88
+ + +L AC+ V+KG + F
Sbjct: 206 YTFVYMLNACADAKNVDKGGELF 228
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ + G + A +F+ +P +D SW T+I G+ GE A + F+ M+E GV+
Sbjct: 550 VSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQ 609
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ G+L AC+ + +G++
Sbjct: 610 ITFTGLLNACASPEALTEGRRL 631
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A +F+R+ ++ +W +I Y + D A+ F+A+ ++G++
Sbjct: 449 LSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDS 508
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +L C +E GK
Sbjct: 509 STFTSILNVCKSPDALELGK 528
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT+ G++ +A ++FD + +D SW T++ G+G+ G A++LF +M++ GV
Sbjct: 451 MDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVHPDE 510
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR--NVKPTETHYACMVYLLIK 112
V+ + +L+ACS GLV++GK+ F+ M NV P HY CM LL +
Sbjct: 511 VTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLAR 559
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+DFY + G +D+A K+FD +P +D +W +I G+ + L I LF M R D +
Sbjct: 145 VDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPN 204
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
+ +G+ A G + +GK
Sbjct: 205 LSTIVGMFPALGRAGALREGK 225
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY + G + A + F + +KD S+ +LI G + + LF M+ G+
Sbjct: 350 ISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRAEESFRLFHQMKSSGIRPDI 409
Query: 66 VSHIGVLTACS 76
+ +G+LTACS
Sbjct: 410 TTLLGILTACS 420
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +D A IF++LP +D SW ++I YG G+ A+ LFE M++ +
Sbjct: 643 LDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDK 702
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +L+ACS GLV++G +F++M A KP HY+C++ LL
Sbjct: 703 VTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLL 748
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +F +P + SW +I GY +G A+ +F MR+ GV+
Sbjct: 542 IDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDA 601
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
++ VL ACS ++EKGK+ +
Sbjct: 602 ITFTSVLPACSQLAVLEKGKEIHN 625
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +++A ++F+++ K+ SW ++I GY + G+ I LF M E+G+
Sbjct: 441 VDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTL 500
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +L ACS ++ GK
Sbjct: 501 TTLSSILMACSRSVNLQLGK 520
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + + A K+FD +P +D ASW +I Y G+ + A+ LFE M+ G + V+
Sbjct: 343 YAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTL 402
Query: 69 IGVLTACSLGGLVEKGKKFFDEM 91
V+++C+ +E+GK+ E+
Sbjct: 403 TTVISSCARLLDLERGKEIHMEL 425
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G I+ A +IFD +P K ASW +I GY + G A++LF M +E P
Sbjct: 316 LDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM---IEEKP 372
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + V+TAC+ GGLVE+G+K+F M+ + HY CMV LL
Sbjct: 373 DEITMLAVITACNHGGLVEEGRKWFHVMREMGLNAKIEHYGCMVDLL 419
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A FD +P + SW LI GY GELD+A LF+ M P
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM--------P 171
Query: 66 VSHIGVLTACSLGGLVEKG-----KKFFDEMQARNV 96
V+ + G V+ G ++ FDEM + V
Sbjct: 172 HVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV 207
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + ++G + A ++FD + K +W T+I GY + ++D A LF+AM E +
Sbjct: 183 MDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNL---- 238
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
VS ++ ++G F EMQA
Sbjct: 239 VSWNTMIGGYCQNKQPQEGITLFQEMQA 266
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G I+ A +IFD +P K ASW +I GY + G A++LF M +E P
Sbjct: 316 LDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMM---IEEKP 372
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + V+TAC+ GGLVE+G+K+F M+ + HY CMV LL
Sbjct: 373 DEITMLAVITACNHGGLVEEGRKWFHVMREMGLNAKIEHYGCMVDLL 419
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A FD +P + SW LI GY GELD+A LF+ M P
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM--------P 171
Query: 66 VSHIGVLTACSLGGLVEKG-----KKFFDEMQARNV 96
V+ + G V+ G ++ FDEM + V
Sbjct: 172 HVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV 207
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + ++G + A ++FD + K +W T+I GY + ++D A LF+AM E +
Sbjct: 183 MDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNL---- 238
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
VS ++ ++G + F EMQA
Sbjct: 239 VSWNTMIGGYCQNKQPQEGIRLFQEMQA 266
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+FD + KD +W ++I+GYG+ G D A+ LF M GV+
Sbjct: 298 VDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSD 357
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++ + VLTAC+ GLV KG + FD M+ ++P HY CMV LL
Sbjct: 358 ITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLL 403
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+D Y R G + A K+FD +P + S+ ++ Y G L A LFE M
Sbjct: 159 VDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGM 209
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YTR G + A +F R+ K +W ++I G M G + AI+L+E M E+GV+
Sbjct: 344 IDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNE 403
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
++ + +L AC+ GLV++G FF+EM+ + V P H AC+V LL K
Sbjct: 404 ITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCK 451
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G +D A ++FD + + SASW ++I Y GE A+ LF+ M +G ++
Sbjct: 146 YSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITI 205
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106
V + C+ G ++ GK+ D + +++ H A M
Sbjct: 206 TSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALM 243
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ A FD +PVKD LI GY G++D A LF DG+E
Sbjct: 112 VDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLF-----DGMERRT 166
Query: 66 VSHIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPT 99
+ + AC + GG + FD M + +P
Sbjct: 167 SASWNSMIACYAHGGEFREALALFDRMLSEGARPN 201
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + ID A + FDR+ +D +W T+I GY G ++ LFE M+
Sbjct: 243 MEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNE 302
Query: 66 VSHIGVLTACSLGG---LVEK 83
V+ +GV++AC+ G LVE+
Sbjct: 303 VTLVGVISACAQLGSDELVEQ 323
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G +D A ++FDR+ +D ASW +LI YGM G+ A+ LF M G
Sbjct: 330 IDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDS 389
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +L+ACS GL+++G+ +F +M + P HYAC+V LL
Sbjct: 390 IAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLL 435
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F +PVKD+ +W ++I+G+ G AI+ F+ M E V
Sbjct: 235 VDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDH 294
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ + VL+AC+ GGLV +G++F+ M ++P+ HY C V LL +
Sbjct: 295 VTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCR 341
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 50/79 (63%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY + I A K+F+ +PV++ +W +I G+ +G +D A+ LF M++ G++
Sbjct: 134 VNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDA 193
Query: 66 VSHIGVLTACSLGGLVEKG 84
++ + V++AC++ G ++ G
Sbjct: 194 MTLVSVVSACAVAGALDIG 212
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG ID K+F+R+ +D+ SW +I+GY G A++LFE M
Sbjct: 433 VDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDS 492
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+AC GLV++G++ F M + + P+ HY CMV LL
Sbjct: 493 VTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLL 538
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
Y R GR+ A ++FD +P++++ S+ L+ Y LG D A LFEA+
Sbjct: 62 YARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAI 109
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R A ++FD +P ++ SW +LI Y G + A+ LF M G
Sbjct: 193 VDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDE 252
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
V+ V++AC+ +G++ M R+
Sbjct: 253 VTLSSVMSACAGLAAEREGRQVHAHMVKRD 282
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR A IFD +P + S +++ GY ++ A +F M E V +
Sbjct: 295 VDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWN 354
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY-----ACMVYLLIKYNQKA 117
V ++ A + G E+ + F +++ ++ PT Y AC +++ Q+A
Sbjct: 355 V----LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQA 407
>gi|222631343|gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japonica Group]
Length = 490
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ A IF+ +P ++ SW +I GY M GE + A+ LF +M+ +
Sbjct: 334 VDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDL 393
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ VL ACS G E+G+ +F+EMQ ++ + P HY+CMV LL
Sbjct: 394 VTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYSCMVTLL 439
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 44/102 (43%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR D ++FD D AS L+ G ++ A+ LF G+E
Sbjct: 198 IDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNV 257
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS ++ C G + F EMQ+ ++P C++
Sbjct: 258 VSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVL 299
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 39/100 (39%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R G A + D +P + W LI + G+ + A L E MR DGVE
Sbjct: 62 LHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNV 121
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
++ G+++ + G M P T +C
Sbjct: 122 ITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSC 161
>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 824
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A +F + ++S ++ T+ILGYG G + AI+LF +M+E G++
Sbjct: 567 VDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDA 626
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + VL+ACS GLV++G K F++M + N++P+ HY C+ +L
Sbjct: 627 IAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDML 672
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 6 LDFYTRTGRIDLANKIFDR--LPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y ++G I ++ K+F+ +D A+W ++I GY G + +F M E +
Sbjct: 464 IDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRP 523
Query: 64 YPVSHIGVLTACSLGGLVEKGKKF 87
V+ +L ACS G V+ GK+
Sbjct: 524 NAVTVASILPACSQVGSVDLGKQL 547
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 16 DLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75
D+ K+FD + K+ +W TLI Y G A F M ++ PVS + V A
Sbjct: 169 DVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAV 228
Query: 76 SLGGLVEKGKKFFDEM 91
+ ++K F+ M
Sbjct: 229 ATSRSIKKANVFYGLM 244
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F +PVKD+ +W ++I+G+ G AI+ F+ M E V
Sbjct: 235 VDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDH 294
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ + VL+AC+ GGLV +G++F+ M ++P+ HY C V LL +
Sbjct: 295 VTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCR 341
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 50/79 (63%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY + I A K+F+ +PV++ +W +I G+ +G +D A+ LF M++ G++
Sbjct: 134 VNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDA 193
Query: 66 VSHIGVLTACSLGGLVEKG 84
++ + V++AC++ G ++ G
Sbjct: 194 MTLVSVVSACAVAGALDIG 212
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YTR G + A +F R+ K +W ++I G M G + AI+L+E M E+GV+
Sbjct: 393 IDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNE 452
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
++ + +L AC+ GLV++G FF+EM+ + V P H AC+V LL K
Sbjct: 453 ITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLCK 500
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G +D A ++FD + + SASW ++I Y GE A+ LF+ M +G ++
Sbjct: 195 YSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITI 254
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106
V + C+ G ++ GK+ D + +++ H A M
Sbjct: 255 TSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALM 292
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ A +FD +PVKD LI GY G++D A LF DG+E
Sbjct: 161 VDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLF-----DGMERRT 215
Query: 66 VSHIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPT 99
+ + AC + GG + FD M + +P
Sbjct: 216 SASWNSMIACYAHGGEFREALTLFDRMLSEGARPN 250
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + ID A + FDR+ +D +W T+I GY G ++ LFE M+
Sbjct: 292 MEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNE 351
Query: 66 VSHIGVLTACSLGG---LVEK 83
V+ +GV++AC+ G LVE+
Sbjct: 352 VTLVGVISACAQLGSDELVEQ 372
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG ID K+F+R+ +D+ SW +I+GY G A++LFE M
Sbjct: 191 VDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDS 250
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+AC GLV++G++ F M + + P+ HY CMV LL
Sbjct: 251 VTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLL 296
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR A IFD +P + S +++ GY ++ A +F M E V +
Sbjct: 53 VDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWN 112
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY-----ACMVYLLIKYNQKA 117
V ++ A + G E+ + F +++ ++ PT Y AC +++ Q+A
Sbjct: 113 V----LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQA 165
>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
Length = 1062
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRID A+K+F + K+ SW ++I GY G A+ +FE M+E G
Sbjct: 730 VDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDH 789
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLVE+G +F+ M+ + P HY+C++ LL
Sbjct: 790 VTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLL 834
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + R+D A ++FD +P +++ SW LI G+ + G + A LF AM +G P
Sbjct: 107 VNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRP 166
Query: 66 VSHI--GVLTACSLGG 79
S VL AC G
Sbjct: 167 TSFTFGSVLRACQDSG 182
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 17 LANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED--GVEYYPVSHI----- 69
LA ++FD PV+D +W L+ Y G+ LF AM+ D G+E P H
Sbjct: 225 LAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLI 284
Query: 70 --GVLTACSLG 78
L++CSLG
Sbjct: 285 TATYLSSCSLG 295
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID A ++F + +D SW T+I G + A+ + MR++ +
Sbjct: 425 VNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSN 484
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ I L++C+ GL+ G++
Sbjct: 485 FAAISGLSSCAGLGLLAAGQQL 506
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I LA ++F+ + KD +W T+I G + G + A LF+ M+E GVE
Sbjct: 340 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPND 399
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS G+V++G+K D M + ++P HY C++ LL +
Sbjct: 400 ITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 447
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + A +FDR+ +D SW T+I GY + G+ + A+ LF+ MR GV+
Sbjct: 239 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTE 298
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ + +L+AC+ G ++KG
Sbjct: 299 ATVVSLLSACAHLGALDKG 317
>gi|334186513|ref|NP_193153.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635637|sp|Q5XEY7.2|PP309_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14170
gi|332657989|gb|AEE83389.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 477
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + +D A+ +F + +D SW +LILGYG+ G++ ++ LF+ M ++G+E V
Sbjct: 278 DMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAV 337
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
+ +GVL+AC+ GGLVEK +F MQ N+ P HYA
Sbjct: 338 TFLGVLSACAHGGLVEKSWLYFRLMQEYNIVPELKHYA 375
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++ A K+FD +PV+DS + + GY GE + + +F M G V
Sbjct: 179 YVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVM 238
Query: 69 IGVLTACSLGGLVEKGKK 86
+ +L AC G ++ GK
Sbjct: 239 VSLLMACGQLGALKHGKS 256
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G I + +IFD++P KD SW T+I+GY + G+ +A+ +F+ M+ G+E
Sbjct: 466 MHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNE 525
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ + VLTACS+ GL +G K F+ MQ + P HY CM LL
Sbjct: 526 STFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLL 571
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F ++P++ +W +I GY + A + F MR DG +
Sbjct: 264 VDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEV 323
Query: 66 VSHIGVLTACS 76
V+ I +LTAC+
Sbjct: 324 VTAINLLTACA 334
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPV 66
Y + G + A ++FD +P +D SW T++ GY G +A+ F M + V + V
Sbjct: 164 LYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSV 223
Query: 67 SHIGVLTACSLGGLVEKGKKF 87
I L AC L + G++
Sbjct: 224 GVIAALAACCLESALALGREI 244
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ G I+ A K+F R +D SW ++I GYG G+ A+ +F+ M+ G+
Sbjct: 548 LTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDD 607
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
V+ IGVLTAC+ GLVE+G+K+F+ M + ++ HY+CMV L
Sbjct: 608 VTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDL 652
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y +TG + + ++F +P KD +W ++ G + + A+ +F + ++GV+
Sbjct: 446 LDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNE 505
Query: 66 VSHIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPTETHYACMVY-LLIKYNQKAR 118
+ V+ AC S VE GK ++ A VK +++ C+ LL Y++K
Sbjct: 506 YTFSSVINACSSSAATVEHGK----QIHATAVKSGKSNALCVSSALLTMYSKKGN 556
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +T + IFD + +K+ SW +L+ GY G D I+L M+ +GV
Sbjct: 146 VDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNG 205
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ VL A + ++E G
Sbjct: 206 FTFATVLGALADESIIEGG 224
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++ + A +FD + V+DS +W +I GY +G +F MR GV+
Sbjct: 250 YLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVF 309
Query: 69 IGVLTACS 76
L CS
Sbjct: 310 CTALKLCS 317
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
Length = 2090
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I L+ K FD++P K+ SW +I GM G A+ L M+ G++
Sbjct: 481 LDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNV 540
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ + VL+ACS GGLVE+G FF+ M Q V+P HY+CMV +L +
Sbjct: 541 VTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSR 588
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I +D Y++ I+LA K+FDRL KD+ SW +I G+ G+ D AI LF+ M +
Sbjct: 375 VINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQ 434
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
+ V+ + +L A S+ +++ K
Sbjct: 435 EKPNGVTILSLLEAFSVSADLKRSK 459
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFY +TG +D A +FD + +DS SW +I G+ G D + F R E
Sbjct: 77 LDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNV 136
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ + + AC G +E+G K
Sbjct: 137 STLVLAIHACRSLGAMEEGLK 157
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYYPVSHIGVLT 73
++ A ++FD + +D SW +I GY GE +A+ LF M + +E ++ + VL
Sbjct: 186 MERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLK 245
Query: 74 ACSLGGLVEKGKK 86
AC+ G + G+
Sbjct: 246 ACANTGDISMGRS 258
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ + A K F+ +P +++ SW ++I G + A++LF +M + G
Sbjct: 279 IDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADE 338
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
V+ + +L +C K F D Q +
Sbjct: 339 VTLVNLLQSC---------KYFVDPFQCK 358
>gi|125555089|gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indica Group]
Length = 992
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D ++R G I A KIFD KDS SW T+I Y M G+ A++LF M G
Sbjct: 782 VLNALIDMHSRCGSISFARKIFDISMEKDSVSWSTMINAYSMHGDGGSALDLFLMMVSTG 841
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ ++ + VL+ACS G +E+G+ F M A + P HYACMV LL
Sbjct: 842 IKPDDITFVSVLSACSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLL 892
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G++DL+ ++FD + +D SW +I GY + G L A + M++DG
Sbjct: 184 LDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDGFRPNA 243
Query: 66 VSHIGVLTACSLGGLVEKG 84
S +G+++ S G+ + G
Sbjct: 244 SSLVGIVSMVSGLGVRDAG 262
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G++ + K+F + V+ SW T+I G+ G+ + F MR +++
Sbjct: 487 LAMYADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDL 546
Query: 66 VSHIGVLTACS 76
V+ I ++++ S
Sbjct: 547 VTLIALISSLS 557
>gi|414864686|tpg|DAA43243.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 484
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G I + +IFD++P KD SW T+I+GY + G+ A+ +F+ M+ +G+E
Sbjct: 155 MHMYARCGDIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKTALEMFDEMKCNGIEPNE 214
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ + VLTACS+ GL +G K F+ MQ + P HY CM LL
Sbjct: 215 STFVSVLTACSVSGLETEGWKEFNSMQHEYGMVPQIEHYGCMTDLL 260
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A+++F + K+ SW T+I+ +G+ G+ + A++LF+ + +G+
Sbjct: 408 IDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDE 467
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
++IGVL+ACS GGLV +G+ F EM+ ++P HYACM+ LL K
Sbjct: 468 ATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGK 515
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A ++FD +P+KD SW +++ Y G+L+ A LF+ + V
Sbjct: 275 VDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNV---- 330
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++ A S + ++ + F++M A V+P +
Sbjct: 331 VSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A K+F +P ++ SW ++ Y D AI +F M GVE +
Sbjct: 309 YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368
Query: 69 IGVLTACSLGGLVEKGKKFFD 89
+ VL+AC+ ++ G +D
Sbjct: 369 VSVLSACAQLCSLDVGTWLYD 389
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ID A ++F+ LP +++ +W +I + M G + AI F M + GV
Sbjct: 312 VDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPND 371
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V++IG+L+ACS GLVE+G+ FF M + ++P HY CMV LL
Sbjct: 372 VAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D R G I A +FD +P + SW +I GY G AINLF+ M+ ++
Sbjct: 211 IDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNY 270
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL A + G +E GK
Sbjct: 271 VTLVSVLPAIARIGALELGK 290
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I LA ++F+ + KD +W T+I G + G + A LF+ M+E GVE
Sbjct: 431 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPND 490
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS G+V++G+K D M + ++P HY C++ LL +
Sbjct: 491 ITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 538
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + A +FDR+ +D SW T+I GY ++G++D A LF+ M E +
Sbjct: 268 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNL---- 323
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
VS +L G VE F EM R+V + AC
Sbjct: 324 VSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLAC 363
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y G+ID A ++FD +P ++ SW +++ G+ G ++ A LF M V
Sbjct: 299 INGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDV---- 354
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
VS +L + G + FD+M+A VKPTE A +V LL
Sbjct: 355 VSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE---ATVVSLL 396
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G ++ A +F +P +D SW +++ Y G+ + A+ LF+ MR GV+ +
Sbjct: 333 FVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATV 392
Query: 69 IGVLTACSLGGLVEKG 84
+ +L+AC+ G ++KG
Sbjct: 393 VSLLSACAHLGALDKG 408
>gi|242037017|ref|XP_002465903.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
gi|241919757|gb|EER92901.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
Length = 656
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G I + +IFD++P KD SW T+I+GY + G+ +A+ +F+ M+ G+E
Sbjct: 466 MHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNE 525
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ + VLTACS+ GL +G K F+ MQ + P HY CM LL
Sbjct: 526 STFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLL 571
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F ++P++ +W +I GY + A + F MR DG +
Sbjct: 264 VDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEV 323
Query: 66 VSHIGVLTACS 76
V+ I +LTAC+
Sbjct: 324 VTAINLLTACA 334
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPV 66
Y + G + A ++FD +P +D SW T++ GY G +A+ F M + V + V
Sbjct: 164 LYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSV 223
Query: 67 SHIGVLTACSLGGLVEKGKKF 87
I L AC L + G++
Sbjct: 224 GVIAALAACCLESALALGREI 244
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++G ID A +FD + +++ SW +L+ GYGM G + A++LF+ M++ G
Sbjct: 525 IDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDG 584
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + VL ACS G+V++G +F +M + + P HYACMV LL
Sbjct: 585 ITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLL 630
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + +++ ANK+F+ + KD SW ++ GY +G D A++LF+ M+E+ ++
Sbjct: 276 VSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDV 335
Query: 66 VSHIGVLTACSLGGLVEKGKKF-----FDEMQARNVKPT 99
++ V + G +KG F F +MQ ++P
Sbjct: 336 ITWSAV-----IAGYAQKGHGFEALDVFRQMQLYGLEPN 369
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDS--ASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + +A IFD + KD +W +I GY GE + A+ LF + +
Sbjct: 419 IDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSL 478
Query: 64 YPVSHI--GVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA--CMV 107
P + L AC+ G + G++ RN +E Y C++
Sbjct: 479 KPNAFTLSCALMACARLGELRLGRQ-LHAYALRNENESEVLYVGNCLI 525
>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 701
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY++ GR+D A +FD+LP K+ SW L+ GY G A+ LFE M V
Sbjct: 367 VDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAPNH 426
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+AC+ GL E+G + F M + +KP HYACM+ LL
Sbjct: 427 VTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELL 472
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y++ G I+ A F+ +P K + +W ++ GY + G + A+ L MR+ GV
Sbjct: 266 IDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYALHGYSEEALCLLYEMRDSGV 321
>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
Length = 564
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A +F+ +P + + W +I G G+ G A+NLF M+++G++
Sbjct: 414 IDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDN 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQ 115
V+ + +L ACS GLV++G+ FFD MQ + P HYACMV +L + Q
Sbjct: 474 VTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQ 524
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + +ID A +FD LP +D SW TLI GY G + A+ ++ M+ +G++
Sbjct: 312 VDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPI 371
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +L A S G +++G + M A ++K
Sbjct: 372 QGTFVSILPAYSNLGALQQGMR----MHALSIK 400
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+ A ++FD +P +D +W ++ G A+ LF M +GV V+
Sbjct: 112 YLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTL 171
Query: 69 IGVLTACSLGG 79
VL C L G
Sbjct: 172 SSVLPMCVLLG 182
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F + ++D +W ++I Y G++ A+ LF M + GV P
Sbjct: 210 IDVYGKLGMLVEARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVS--P 267
Query: 66 VSHIGVLTACSLGGLV-----EKGKK 86
VLT SL V E+G K
Sbjct: 268 ----DVLTLVSLASAVAQCGDERGAK 289
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A+++F + K+ SW T+I+ +G+ G+ + A++LF+ + +G+
Sbjct: 408 IDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDE 467
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
++IGVL+ACS GGLV +G+ F EM+ ++P HYACM+ LL K
Sbjct: 468 ATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGK 515
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A ++FD +P+KD SW +++ Y G+L+ A LF+ + V
Sbjct: 275 VDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNV---- 330
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++ A S + ++ + F++M A V+P +
Sbjct: 331 VSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A K+F +P ++ SW ++ Y D AI +F M GVE +
Sbjct: 309 YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368
Query: 69 IGVLTACSLGGLVEKGKKFFD 89
+ VL+AC+ ++ G +D
Sbjct: 369 VSVLSACAQLCSLDVGTWLYD 389
>gi|2244773|emb|CAB10196.1| hypothetical protein [Arabidopsis thaliana]
gi|7268122|emb|CAB78459.1| hypothetical protein [Arabidopsis thaliana]
Length = 428
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + +D A+ +F + +D SW +LILGYG+ G++ ++ LF+ M ++G+E V
Sbjct: 229 DMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAV 288
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
+ +GVL+AC+ GGLVEK +F MQ N+ P HYA
Sbjct: 289 TFLGVLSACAHGGLVEKSWLYFRLMQEYNIVPELKHYA 326
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I + +FD +P K++ASW LI + + G A+ LF M G
Sbjct: 499 IDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNE 558
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ IGVL+AC+ GLVE+GK++F M+ + P HY CMV LL
Sbjct: 559 ITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLL 603
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A K+FD + + SW LI GY G++D A LF+ M E +
Sbjct: 304 VDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFN 363
Query: 66 V---SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108
+++ + CS +K FDEM R+V + M+Y
Sbjct: 364 TMIDAYVKLGDMCS-------ARKLFDEMPERSV----VSWTIMIY 398
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R+G +D A K+FD++ KDSA++ T+I Y LG++ A LF+ M E V VS
Sbjct: 338 YVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSV----VSW 393
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ S G ++ + FD M +N+
Sbjct: 394 TIMIYGYSSNGNLDSARSLFDAMPEKNL 421
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+FD +P + SW +I GY G LD A +LF+AM E +
Sbjct: 366 IDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNL---- 421
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTE 100
S +++ + K F EMQ+ +++P E
Sbjct: 422 FSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDE 457
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYYPVS 67
Y+ G +D A +FD +P K+ SW +I GY + A+ LF M+ +E V+
Sbjct: 400 YSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVT 459
Query: 68 HIGVLTACS------LGGLVEK 83
+ VL A + LGG V +
Sbjct: 460 IVSVLPAIADLGALDLGGWVHR 481
>gi|115453187|ref|NP_001050194.1| Os03g0369700 [Oryza sativa Japonica Group]
gi|12039352|gb|AAG46139.1|AC082644_21 hypothetical protein [Oryza sativa Japonica Group]
gi|108708369|gb|ABF96164.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548665|dbj|BAF12108.1| Os03g0369700 [Oryza sativa Japonica Group]
gi|125544037|gb|EAY90176.1| hypothetical protein OsI_11741 [Oryza sativa Indica Group]
gi|125586399|gb|EAZ27063.1| hypothetical protein OsJ_10992 [Oryza sativa Japonica Group]
Length = 513
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM---REDGVE 62
LD Y++ GR+D +IFDR+ ++ +W ++I GYG G D A+ LFE M +D +
Sbjct: 302 LDMYSKCGRVDDGRRIFDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRHDDAIR 361
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIKYNQKAR 118
+ + L+AC+ GL+ +G++ F M+ + ++P HYACMV LL ++ R
Sbjct: 362 PNHATFLSALSACARAGLLSRGQEVFQSMEREHALRPRMEHYACMVDLLGRFGSVRR 418
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ K+FDR+ D W ++++GY G A+N+F+ MR GV+
Sbjct: 479 VDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTD 538
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYL 109
++ +GVL+AC GLVE+G+K+F M+ ++ P HY+CMV L
Sbjct: 539 ITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDL 583
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y+ GRID A +IFD +P K SW ++I+G+ A++LF M + G
Sbjct: 373 LLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLG 432
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFF 88
+ S GV++AC+ +E G++ F
Sbjct: 433 LRMDKFSLAGVISACASISSLELGEQIF 460
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y+R + A ++F+ +P ++ SW T+I GY G ++ LF++M +
Sbjct: 49 LQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWN 108
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
V V++ + G +E ++ F+EM +N
Sbjct: 109 V----VISGFAKEGNLEVARRLFNEMPWKN 134
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSAS---WITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
Y GR++ A +IF +K +A W ++I GY E A+ LF MR GV+
Sbjct: 249 YASCGRMNDARRIF---CLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDY 305
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ VL+ACS G++++G
Sbjct: 306 STFASVLSACSTLGIIDQG 324
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
Y ++G + ++FD +P KD+ SW +I G+ G L+VA LF M ++G+ + +
Sbjct: 83 YLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMI 142
Query: 68 H 68
H
Sbjct: 143 H 143
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G +++A ++F+ +P K+ +W ++I GY G A+ LF+ + + +E +
Sbjct: 114 FAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDT 173
Query: 69 I---GVLTACSLGGLVEKGKK 86
V+ AC+ G ++ GK+
Sbjct: 174 FVLATVVGACTNLGALDCGKQ 194
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
YT+ G I A ++F+ +P D SW +LI GY G+ D A+ FE + + G + ++
Sbjct: 368 YTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITF 427
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
+GVL+AC+ GLV+KG ++FD ++ ++ + T HYAC++ LL +
Sbjct: 428 VGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSR 472
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G I A IFD+ +D SW +I Y G + LF + + G+
Sbjct: 265 DMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEF 324
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ GVL AC+ E GK+ M P+ + +V++ K
Sbjct: 325 TFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTK 370
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR 57
Y + GR+ A K+FD++ +D+ SW + GY + + A+ LF AM+
Sbjct: 165 YAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQ 213
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
LD Y + + A ++FD + +D SW +I GY G L A LF+ M E
Sbjct: 131 LDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTE 183
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAIN----LFEAMREDG 60
+D +R+GR+ A I D++P++ D W +L+ G + G L +A LFE E+
Sbjct: 467 IDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENP 526
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
Y +++I TA GG+ E K M AR V
Sbjct: 527 ATYTTLANI-YATAGLWGGVAEVRKV----MDARGV 557
>gi|53828565|gb|AAU94392.1| At4g14170 [Arabidopsis thaliana]
gi|55733761|gb|AAV59277.1| At4g14170 [Arabidopsis thaliana]
Length = 458
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + +D A+ +F + +D SW +LILGYG+ G++ ++ LF+ M ++G+E V
Sbjct: 259 DMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAV 318
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
+ +GVL+AC+ GGLVEK +F MQ N+ P HYA
Sbjct: 319 TFLGVLSACAHGGLVEKSWLYFRLMQEYNIVPELKHYA 356
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++ A K+FD +PV+DS + + GY GE + + +F M G V
Sbjct: 160 YVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVM 219
Query: 69 IGVLTACSLGGLVEKGKK 86
+ +L AC G ++ GK
Sbjct: 220 VSLLMACGQLGALKHGKS 237
>gi|29893615|gb|AAP06869.1| chloroplast import-associated channel protein homolog [Oryza sativa
Japonica Group]
Length = 1273
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD++P + + +W ++I G G A+ LF+ M DG +
Sbjct: 1068 VDMYAKCGLVLEARRLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDH 1127
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ VLTACS GG+VE GK + MQ V+P HYACMV+LL
Sbjct: 1128 LTFTAVLTACSYGGMVEVGKILYRAMQVEYGVEPRLEHYACMVHLL 1173
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G I+ A IF ++ K SW T+ILG+ + G+ + AI+LF MR++ ++
Sbjct: 282 IDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPND 341
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ + VLTAC GL+EKG++ F M + ++P H+ CMV LL
Sbjct: 342 ATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLL 387
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ +TG +D +F ++ + SW T+I A+ LF+ M E G + V+
Sbjct: 183 FCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTV 242
Query: 69 IGVLTACSLGGLVEKGKK 86
+ +L CS G +E G++
Sbjct: 243 VTMLPVCSRLGALEVGQR 260
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G ++ A +FDR +D W +I+GYG+ G AI+L+ AM GV
Sbjct: 365 IDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPND 424
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ +G+L AC+ G+V +G FF+ M + P + HYAC++ LL
Sbjct: 425 VTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLL 469
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 2 IEPRL-----DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
IEP L Y + G++ A +FD++ + W +I GY G AI++F M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314
Query: 57 REDGVEYYPVSHIGVLTACSLGGLVEKGKKFFD 89
V +S ++AC+ G +E+ + ++
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYE 347
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSA--SWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
Y + R+ A +F+ LP+ + SW ++ Y GE A+ +F MR+ V+
Sbjct: 163 LYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDW 222
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + VL A + +++G+
Sbjct: 223 VALVSVLNAFTCLQDLKQGRS 243
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ID A ++F+ LP +++ +W +I + M G + AI F M + GV
Sbjct: 312 VDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPND 371
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V++IG+L+ACS GLVE+G+ FF M + ++P HY CMV LL
Sbjct: 372 VAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLL 417
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D R G I A +FD +P + SW +I GY G AINLF+ M+ ++
Sbjct: 211 IDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNY 270
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL A + G +E GK
Sbjct: 271 VTLVSVLPAIARIGALELGK 290
>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 652
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD + VKDSASW +I GYG+ ++A+++F M GV+
Sbjct: 408 MDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDE 467
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ +G+L ACS G V +G+ F +M+ N+ PT HYAC++ +L
Sbjct: 468 ITFVGLLQACSHSGFVNEGRNFLAQMETLYNILPTSDHYACVIDML 513
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKD-SASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y++ ++ A K+FD LP +D S W L+ GY + + A+ +F MRE+GV +
Sbjct: 204 YSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHT 263
Query: 68 HIGVLTACSLGGLVEKGKK 86
VL++ ++ G ++ G+
Sbjct: 264 ITSVLSSFTVSGDLDNGRS 282
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++ ++ AN IF+ + +D +W +++ + G+ D + LFE M G+
Sbjct: 303 IDLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRPDI 362
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
V+ VL C +++G++ M A
Sbjct: 363 VTLTTVLPTCGRLASLKQGREIHGYMIA 390
>gi|297741429|emb|CBI32560.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y+++G I A KIF R+ +D+ + + GY G + AI FE M E G
Sbjct: 427 LVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERG 486
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
V V+ + +L+AC GLVE G+K+F M N+ P HYACM+ L + NQ
Sbjct: 487 VRPDAVTFVALLSACRHCGLVELGEKYFASMTDYNILPEIDHYACMIDLYGRANQ 541
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 11 RTGRIDLANKIFDR-LPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G +++ +F R L + D SW TLI GY G + A+ LF M E+ V + +
Sbjct: 202 REGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRWNEHTIA 261
Query: 70 GVLTACS 76
G+L+AC+
Sbjct: 262 GLLSACA 268
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YTR G + A+ F + K+ W +LI G+ G+ + A+ LF MR G+E
Sbjct: 235 ISMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNG 294
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL AC+ GGLV +G K+FD M++ ++P HY C+V LL
Sbjct: 295 VTFVAVLNACNHGGLVSEGFKYFDLMRSMGIRPMIQHYGCLVDLL 339
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
LD R G +D A ++F +P ++ SW T+I G+ G A++LF M G+
Sbjct: 133 LDALVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPD 192
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ +G ++A GL+ GK
Sbjct: 193 EATMVGFVSAVRDIGLLGIGKS 214
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+ A K+FD +P + +W L+ G+LD A +F M + V VS
Sbjct: 105 YARLGRVCDARKVFDGMPDRTVVTWNVLLDALVRDGDLDAAWEVFVEMPQRNV----VSW 160
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTET 101
++ + G ++ F EM A + P E
Sbjct: 161 NTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEA 194
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ K+FDR+ D W ++++GY G A+N+F+ MR GV+
Sbjct: 479 VDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTD 538
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYL 109
++ +GVL+AC GLVE+G+K+F M+ ++ P HY+CMV L
Sbjct: 539 ITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDL 583
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID A K F ++ +D SW T+I+G G + A+ +F+ + G
Sbjct: 1084 VEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDE 1143
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ GVL AC++GGLV++G F M+ V P HYAC+V ++ +
Sbjct: 1144 ITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSR 1191
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y+ GRID A +IFD +P K SW ++I+G+ A++LF M + G
Sbjct: 373 LLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLG 432
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFF 88
+ S GV++AC+ +E G++ F
Sbjct: 433 LRMDKFSLAGVISACASISSLELGEQIF 460
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
L + R G ++ A +FD +P +D SW T+I GY G D A F M++ G+
Sbjct: 783 LKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGI 838
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y+R + A ++F+ +P ++ SW T+I GY G ++ LF++M +
Sbjct: 49 LQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWN 108
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
V V++ + G +E ++ F+EM +N
Sbjct: 109 V----VISGFAKEGNLEVARRLFNEMPWKN 134
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G + + ++F+ + K+ SW + + GEL+ A ++F+ M + V
Sbjct: 752 LDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDV---- 807
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS +++ GL + +FF EMQ ++P+ Y+ ++
Sbjct: 808 VSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLL 849
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GR++ A +IF W ++I GY E A+ LF MR GV+ +
Sbjct: 249 YASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTF 308
Query: 69 IGVLTACSLGGLVEKG 84
VL+ACS G++++G
Sbjct: 309 ASVLSACSTLGIIDQG 324
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
Y ++G + ++FD +P KD+ SW +I G+ G L+VA LF M ++G+ + +
Sbjct: 83 YLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMI 142
Query: 68 H 68
H
Sbjct: 143 H 143
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G +++A ++F+ +P K+ +W ++I GY G A+ LF+ + + +E +
Sbjct: 114 FAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDT 173
Query: 69 I---GVLTACSLGGLVEKGKK 86
V+ AC+ G ++ GK+
Sbjct: 174 FVLATVVGACTNLGALDCGKQ 194
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G ++ A ++FD++P ++ SW ++I G G + A+ LFE M + G++
Sbjct: 184 VDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNE 243
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+S +GVL+ACS GLV +G+ +F+ M Q + P +HY CM+ LL
Sbjct: 244 ISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLL 289
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 20 KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79
K+F + +D SW +I GY G D ++N+F MR+ G++ VL+AC+
Sbjct: 97 KLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLA 156
Query: 80 LVEKGKKF 87
+E G++F
Sbjct: 157 ALELGRQF 164
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G ++ A +FD++ + + +W +I G+ ++ A+ LF M E V
Sbjct: 52 VHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDV---- 107
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
VS V+ + G ++ F++M+ +K
Sbjct: 108 VSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKS 140
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A+++F+ + K +SW +I G+ M G + A +LF MR++G+E
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDD 420
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS GL++ G+ F + Q N+ P HY CM+ LL
Sbjct: 421 ITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLL 466
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y++ G +++A+ +F+ L KD SW TLI GY + A+ LF+ M G
Sbjct: 253 IVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSG 312
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ G ++ G+
Sbjct: 313 ESPNDVTMLSVLPACAHLGAIDIGR 337
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R GR++ A K+FD +D S LI GY G++ A +F+ + E V +
Sbjct: 125 ISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWN 184
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
G + C E+ + F EM NV+P E
Sbjct: 185 AMITGYVENCGY----EEALELFKEMMRTNVRPDE 215
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G + A K+FD + +D SW +I GY + A+ LF+ M V +
Sbjct: 159 YASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTL 218
Query: 69 IGVLTACSLGGLVEKGKKF 87
+ VL+AC+ G +E G++
Sbjct: 219 VSVLSACAQSGSIELGREI 237
>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g09950
gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 995
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+D A + F+ +PV++S SW ++I GY G+ + A+ LFE M+ DG + P
Sbjct: 661 VDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDG-QTPP 719
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GL+E+G K F+ M + + P H++CM +L
Sbjct: 720 DHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVL 767
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y TG A K+FD +P+++ SW ++ GY GE A+ M ++G+
Sbjct: 43 INAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQ 102
Query: 66 VSHIGVLTACSLGGLV 81
+ + VL AC G V
Sbjct: 103 YAFVSVLRACQEIGSV 118
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I A ++F + KDS SW ++I G G A+ +++MR +
Sbjct: 356 VNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGS 415
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
+ I L++C+ + G++ E
Sbjct: 416 FTLISSLSSCASLKWAKLGQQIHGE 440
>gi|302804817|ref|XP_002984160.1| hypothetical protein SELMODRAFT_16979 [Selaginella moellendorffii]
gi|300148009|gb|EFJ14670.1| hypothetical protein SELMODRAFT_16979 [Selaginella moellendorffii]
Length = 195
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A ++FDR+P + SW ++I GY GE + A+ L E M ED +
Sbjct: 82 VDMYAKCGSLDNARRVFDRMPRHTTVSWNSMITGYVQGGEPETALTLLERMLEDHWQPDG 141
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ + +LTAC GLV+KGK+ F M + + P HY+C V LL + NQ
Sbjct: 142 VTFLSLLTACCHAGLVDKGKELFRLMVSDYAIVPGIEHYSCAVDLLGRANQ 192
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91
SW TLI GYG G+ VA+ +F MR++G+E ++ I V+ AC+L E+G +
Sbjct: 8 SWNTLIAGYGQSGDGAVALAMFSRMRDEGLEPDALTFIAVINACALLAAREEGVSIHSQA 67
Query: 92 QARNVKPT 99
++ T
Sbjct: 68 GRHELENT 75
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I + +FD +P K++ASW LI + + G A+ LF M G
Sbjct: 325 IDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNE 384
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ IGVL+AC+ GLVE+GK++F M+ + P HY CMV LL
Sbjct: 385 ITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLL 429
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A K+FD + + SW LI GY G++D A LF+ M E +
Sbjct: 130 VDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFN 189
Query: 66 V---SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108
+++ + CS +K FDEM R+V + M+Y
Sbjct: 190 TMIDAYVKLGDMCS-------ARKLFDEMPERSV----VSWTIMIY 224
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R+G +D A K+FD++ KDSA++ T+I Y LG++ A LF+ M E V VS
Sbjct: 164 YVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSV----VSW 219
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ S G ++ + FD M +N+
Sbjct: 220 TIMIYGYSSNGNLDSARSLFDAMPEKNL 247
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+FD +P + SW +I GY G LD A +LF+AM E +
Sbjct: 192 IDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNL---- 247
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTE 100
S +++ + K F EMQ+ +++P E
Sbjct: 248 FSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDE 283
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYYPVS 67
Y+ G +D A +FD +P K+ SW +I GY + A+ LF M+ +E V+
Sbjct: 226 YSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVT 285
Query: 68 HIGVLTACS------LGGLVEK 83
+ VL A + LGG V +
Sbjct: 286 IVSVLPAIADLGALDLGGWVHR 307
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A KIFD + D SW +LILGY G + A+ LF+ MR V+
Sbjct: 511 IDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNH 570
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ +GVLTACS GLVE+G + + M+ + PT H +CMV LL +
Sbjct: 571 VTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLAR 618
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A K+FD +P ++ SW ++I GY G+ A+ + M + GV
Sbjct: 105 LNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQ 164
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ ++ ACS G + G++
Sbjct: 165 FTFGSIIKACSSLGDIGLGRQL 186
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT++ I A +F R+ +D SW ++I G+ LG A+ F+ M GV Y P
Sbjct: 206 ISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGV-YLP 264
Query: 66 VSHI--GVLTACS 76
I V +ACS
Sbjct: 265 NEFIFGSVFSACS 277
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G + A +F ++ D +W +I G+ G+ AI F MR G+ +
Sbjct: 309 DMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEI 368
Query: 67 SHIGVLTACS 76
+ +L AC+
Sbjct: 369 TVRSLLCACT 378
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y + G ++ IFD + KD SW TLI GYGM G A+ +FE M + GV
Sbjct: 330 MAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPN 389
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ I VL ACS GLV++GK+ F+ M NV P HYACMV LL
Sbjct: 390 IITFISVLGACSHAGLVDEGKRLFESMVDYNVTPRAEHYACMVDLL 435
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y+R+G I A KIF+ + +D+ +W ++IL G + AI LFE M ++
Sbjct: 454 ITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPD 513
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++++GVL+AC+ GLVE+GK +F+ M+ N++PT +HYACM+ LL
Sbjct: 514 HITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLL 560
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L + + G +D A ++FD +P DS SW T+I+GY LG A++ F M G+
Sbjct: 86 LSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQ 145
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL +C+ ++ GKK
Sbjct: 146 FTFTNVLASCAAAQALDVGKK 166
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ID A IFD L +D +W +I+GY G + A+ LF M +G +
Sbjct: 353 LDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNN 412
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL+ S ++ GK+
Sbjct: 413 YTLAAVLSVISSLASLDHGKQL 434
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G +A +FDR+ +KD+++W T+I + + D+A+ LF+ M + +
Sbjct: 187 LNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDI---- 242
Query: 66 VSHIGVLTA-CSLGGLVEKGKKFFDEMQARNVKP 98
VS ++T C G + + F +++ ++KP
Sbjct: 243 VSWNSIITGYCHQGYDIRALETFSFMLKSSSLKP 276
>gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g18840-like [Vitis vinifera]
Length = 670
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y+++G I A KIF R+ +D+ + + GY G + AI FE M E G
Sbjct: 427 LVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERG 486
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
V V+ + +L+AC GLVE G+K+F M N+ P HYACM+ L + NQ
Sbjct: 487 VRPDAVTFVALLSACRHCGLVELGEKYFASMTDYNILPEIDHYACMIDLYGRANQ 541
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 11 RTGRIDLANKIFDR-LPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G +++ +F R L + D SW TLI GY G + A+ LF M E+ V + +
Sbjct: 202 REGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRWNEHTIA 261
Query: 70 GVLTACS 76
G+L+AC+
Sbjct: 262 GLLSACA 268
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A +IFD + D +W +I GYGM GE A+ LF M ++
Sbjct: 568 IDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNG 627
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ + +L+AC GL+E+G++ F M +++P HYACMV LL K
Sbjct: 628 VTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKHYACMVDLLGK 674
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y R G+ D A KIF +K D +W TLI Y LG + A++L++ M +G+
Sbjct: 466 IGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPN 525
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
+ I V++AC+ +E+G+K
Sbjct: 526 STTLITVISACANLVALERGEKI 548
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I Y++ + A +F LP KD SW +LI Y G + A+ LF+ M E G
Sbjct: 256 VISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESG 315
Query: 61 VEYYPVSHIGVLTACSLGGL-----VEKGKKFFDEMQARN 95
++ P VL +C L GL V GK F + RN
Sbjct: 316 LQ--PDD---VLVSCLLSGLGNSGNVHGGKAFHAVIMKRN 350
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A+++F + ++D SW L+ GY G+ + I+LFE M G+
Sbjct: 413 ITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDG 472
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ +GVL+ACS GLVEKG +F+ M + + P HY CM+ LL +
Sbjct: 473 VTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSR 520
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A ++FD +P KDS SW T+I G G A++ F+ M +G + VLTAC
Sbjct: 223 AEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGG 282
Query: 78 GGLVEKGKK 86
+++GK+
Sbjct: 283 FLALDEGKQ 291
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 45/88 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + + A +F ++ K+ SW +++GYG G + A+ +F M+ + +
Sbjct: 312 LDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDD 371
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
+ V+++C+ +E+G +F + A
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHGQALA 399
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
P +D Y +TG I+ AN+IF+ +P K+ + T+I G + A LF+ M E
Sbjct: 177 SPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKD-- 234
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEM 91
+S ++T + GL ++ F EM
Sbjct: 235 --SISWTTIITGLTQNGLFKEAVDKFKEM 261
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYY 64
L Y++ G + ++FD +P D SW +L+ GY G + ++ ++ M +DG V
Sbjct: 78 LSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLN 137
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM 91
++ +L S G V+ G++ ++
Sbjct: 138 RITFSTMLILSSNRGFVDLGRQIHGQI 164
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A +FD +P + SW TL+ Y LG L +F++M V
Sbjct: 47 INTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDV---- 102
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
VS +L+ + GL+ + + ++ M
Sbjct: 103 VSWNSLLSGYAGNGLISESVRVYNMM 128
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ GRI A K+FD L VKD SW +I GY G AI +F+ + + G +
Sbjct: 546 ITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDY 605
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
+S++ VL+ CS GLV++GK +FD M+ A N+ P H++CMV LL
Sbjct: 606 ISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLL 651
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y +T +D A ++FD +P +D SW ++ G + A+++ M+ GV ++
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
LTAC+ + GK+ ++ RN+ + + A
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQV-IRNLPHIDPYVA 308
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + GR+ A ++F R+P +D ASW TL+ GY + V++ F +M G + +P
Sbjct: 78 LNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSG-DSWP 136
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ GRI A K+FD L VKD SW +I GY G AI +F+ + + G +
Sbjct: 566 ITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDY 625
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
+S++ VL+ CS GLV++GK +FD M+ A N+ P H++CMV LL
Sbjct: 626 ISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLL 671
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y +T +D A ++FD +P +D SW ++ G + A+++ M+ GV ++
Sbjct: 234 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 293
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
LTAC+ + GK+ ++ RN+ + + A
Sbjct: 294 TSSLTACARLSSLRWGKQLHAQV-IRNLPHIDPYVA 328
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + GR+ A ++F R+P +D ASW TL+ GY + V++ F +M G + +P
Sbjct: 98 LNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSG-DSWP 156
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G +D + +IF R+ KD+A+W +I G G+ A+ LFE M+ +
Sbjct: 320 IEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDG 379
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ IGVL+AC GGLV++G+++F M + +++P HY+C+V LL
Sbjct: 380 ITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLL 425
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVA-INLFEAMREDGVEYY 64
LD YT+ G ++ A K+F+++P ++ SW L+ GYG+ G+LD A + ++ ++D + +
Sbjct: 188 LDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILW- 246
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
++ AC G E+ F +MQ + V+P
Sbjct: 247 ----TSMINACVQHGSFEEALILFRDMQLQRVEP 276
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT GR D A ++FD +P + W ++ Y G A+ L M G
Sbjct: 88 MEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDR 147
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ + +TACS G + G++ M
Sbjct: 148 VTLVTAVTACSRAGDLNLGRRIHSYM 173
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++D A F + KD W ++I G + A+ LF M+ VE +
Sbjct: 222 YGIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTV 281
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +LT C+ G +++G+ ++RN+K
Sbjct: 282 VTLLTCCANIGALDQGEWIHQYAESRNMK 310
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G I+ ANK+FD + ++D +W LI+GY G ++N + M GV+
Sbjct: 110 VSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDF 169
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ IG+L ACS GLVE G+ +F M + +KP HYACM+ LL
Sbjct: 170 ITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLL 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A +F+++ KD SW +L+ G G + A+ LF MR G+
Sbjct: 9 VDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQ 68
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL+AC+ ++E GK+
Sbjct: 69 IVIAAVLSACAELTVLEFGKQ 89
>gi|414864687|tpg|DAA43244.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 658
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G I + +IFD++P KD SW T+I+GY + G+ A+ +F+ M+ +G+E
Sbjct: 468 MHMYARCGDIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKTALEMFDEMKCNGIEPNE 527
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ + VLTACS+ GL +G K F+ MQ + P HY CM LL
Sbjct: 528 STFVSVLTACSVSGLETEGWKEFNSMQHEYGMVPQIEHYGCMTDLL 573
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM------REDGV 61
Y + G + A ++FD +P +D SW T++ GY G +A+ F M R DGV
Sbjct: 166 LYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFRDMNDALRVRHDGV 225
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKF 87
I L AC L + +G++
Sbjct: 226 GV-----IAALAACCLESALAQGREI 246
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F + ++ +W LI GY + A + F MR +G +
Sbjct: 266 VDMYCKCGNVLYAENVFATMLLRTVVTWNCLIGGYALNERPVDAFDCFMQMRAEGFQVEA 325
Query: 66 VSHIGVLTAC 75
V+ I +L AC
Sbjct: 326 VTAINLLAAC 335
>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Glycine max]
Length = 586
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G A+ +F + ++ SW +I GYG G + A+ LF M+E+G+E
Sbjct: 251 LDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDS 310
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+++ VL+ACS GL+++GKK+F + + + +KP HYACMV LL
Sbjct: 311 VTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLL 356
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A ++F+ LPV++ SW +I GY + A+NLF MRE G
Sbjct: 46 IDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDG 105
Query: 66 VSHIGVLTACSLGGLVEKG 84
++ L ACS +G
Sbjct: 106 YTYSSSLKACSCADAAGEG 124
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-----DG 60
+D Y + R+ A K+FDR+ K SW TLILGY L A++LF +RE DG
Sbjct: 149 VDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDG 208
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKF 87
+ S IGV + L+E+GK+
Sbjct: 209 --FVLSSIIGVFADFA---LLEQGKQM 230
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A KIF+ + KD +W +I+G G + A+ +F M E V
Sbjct: 414 IDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDE 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
+++IGV+ AC+ GLV KGK FF M ++ +KP THY CMV LL
Sbjct: 474 ITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLL 519
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ T RIDLA K FD++P +D SW +I GY + + LF M+ V+ +
Sbjct: 316 FANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTM 375
Query: 69 IGVLTACSLGGLVEKG---KKFFDEMQARN 95
+ +LTAC+ G +E G K + D+ + +N
Sbjct: 376 VSILTACAHLGALELGEWAKTYIDKNKIKN 405
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 1 MIEPRL-------DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF 53
++EP L D + G +D A +FD + +D SW +++ G+ +D+A F
Sbjct: 270 IVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYF 329
Query: 54 EAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
+ M E + G L ++ F +MQ NVKP E
Sbjct: 330 DQMPERDYVSWTAMIDGYLRMNRFKEVL----TLFRDMQMSNVKPDE 372
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G I + K+FD L K+ ASW +I+ +G+ G AI L+E M++ G
Sbjct: 594 IDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDR 653
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
++IG+L AC GLVE+G K+F EMQ N ++P HYAC++ +L +
Sbjct: 654 FTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLAR 701
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G+ A +FDR+ K+ SW +I GY G ++ LF +G++ +
Sbjct: 493 LSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHE 552
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
++ + V ACS + GK+
Sbjct: 553 IAIVSVFGACSQLSALRLGKE 573
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y++ G ++ A F + K+ SW T+I + + G+++ A NL + M+ G E V
Sbjct: 293 YSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEV 352
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + VL AC D++Q R++K
Sbjct: 353 TILNVLPAC------------LDKLQLRSLK 371
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLG-ELDVAINLFEAMREDGVEYYPVS 67
Y + G +D A K+FD +P + SW ++I + G D L E + E+G+ V+
Sbjct: 191 YGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVT 250
Query: 68 HIGVLTACSLGGLVEKG 84
+ +L C+ G V+ G
Sbjct: 251 VVTILPVCAGEGEVDIG 267
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR+D A +F R+ +D +W +I G G A+ F MR DG +
Sbjct: 414 LDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNS 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS+I VLTACS L+ +G+ +FDEM+ N+ P HY CM+ LL
Sbjct: 474 VSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLL 519
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FD + V+D ++ +++ GY G+L A+ LF +MR +
Sbjct: 313 IDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDN 372
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +LTAC+ G +++G+ ++ R V+
Sbjct: 373 FTVVNLLTACASLGALQQGRALHACIEQRLVE 404
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 21 IFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80
+ + PV+D SW +LI Y A+ F+ M G+ V+ I VL+AC+
Sbjct: 195 LLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKD 254
Query: 81 VEKGKKFFDEMQARNVKPTET 101
+E G+ ++ + + +E
Sbjct: 255 LELGRSLHLLVEEKGMPTSEN 275
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGEL-DVAINLFEAMREDGVEYY 64
+ Y R G A + FD + VKD+ +W LI G +G L D + L +A D + +
Sbjct: 149 IHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISW- 207
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ A S + F M + + P E
Sbjct: 208 ----TSLIAAYSRANRAREAVGCFKTMLSHGIAPDEV 240
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFD--RLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + G +D A ++F+ L +D +SW LI GYG+ G A+ LF M+ +GVE
Sbjct: 345 MDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEP 404
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +L+ACS GL+++G+K F +M +V+P HYACMV +L
Sbjct: 405 NDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDML 451
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A+++FDR+ ++D W +I Y A+ LF M+E+G
Sbjct: 174 VDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDE 233
Query: 66 VSHIGVLTACSLGG----LVEKGKKFFDEMQARN 95
++ I V +A G + + + FD M+ RN
Sbjct: 234 ITAISVASAVGQLGDGRMAISRARLVFDRMEERN 267
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTA 74
I A +FDR+ ++ SW +++ GY G A++LF M+ + PV+ + +++A
Sbjct: 253 ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSA 312
Query: 75 CSLGGLVEKGKKFFD 89
CS G G+K +
Sbjct: 313 CSYLGSKHLGRKLHN 327
>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
Length = 513
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + A K+FD + KD +W +++ + G A+ FE MR+ GV
Sbjct: 184 LDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQ 243
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + +LTACS GGLV++GK++FD M+ N++P HY +V LL
Sbjct: 244 ITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLL 288
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R GR+D+A +FD+L K+ SW LI G+ G+ + + +F M+ +G E
Sbjct: 83 LDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATH 142
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ V +A + G +E+GK
Sbjct: 143 FTYSSVFSAIAGIGALEQGK 162
>gi|115474729|ref|NP_001060961.1| Os08g0138600 [Oryza sativa Japonica Group]
gi|38636769|dbj|BAD03012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113622930|dbj|BAF22875.1| Os08g0138600 [Oryza sativa Japonica Group]
Length = 690
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F+R+P+++ SW LI GYG G AI +FE + +G+
Sbjct: 360 VDLYCKWGLMEDARNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNH 419
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQKAR 118
V+ + VL AC G VE+GK+ F M Q + KP HYAC++ L + Q+ R
Sbjct: 420 VTFLAVLNACRFSGFVEEGKRIFQLMTQNQRTKPRAMHYACIIEL---FGQQGR 470
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A ++FD +P K +W +++ Y + G + A++L+ +M E GV+
Sbjct: 259 IDMYNKCGKLDEARRVFDGVPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQ 318
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +L S GL+E K+
Sbjct: 319 FTFSTMLRVFSRLGLLEHAKQ 339
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G ID A +F+ LP +D+ SW LI G M G + ++ F M E G+
Sbjct: 293 VDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRD 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ VL+ACS GGLVE+G + F+ M+ V+P HY CMV LL
Sbjct: 353 ITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLL 398
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G ++ A K+FD++P K+ +W T+I GY D A+ LF+ ++ GV
Sbjct: 195 FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVM 254
Query: 69 IGVLTACSLGGLVEKGKKFFD 89
+ V+++C+ G +E G++ D
Sbjct: 255 VSVISSCAHLGALELGERAHD 275
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G + A IF R+ D SW ++I G+ G+++ A LF+ M E +
Sbjct: 161 VHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNL---- 216
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
V+ +++ + +K + F +Q++ V+ ET
Sbjct: 217 VTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANET 252
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+++A K F ++ K+ SW +I GYGM G A+++F M G
Sbjct: 339 VDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNY 398
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ I VL ACS GL++KG+ +++ M+ R ++P HY CMV LL
Sbjct: 399 ITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLL 444
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR++ A +F R+ +D +W +I G G + F MR DG + P
Sbjct: 353 LDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNP 412
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS+I VLTACS L+ +G+ +FDEM+ N+ P HY CM+ LL
Sbjct: 413 VSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLL 458
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 52/92 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FD++ V+D ++ ++I GY G+L A+ LF MR +
Sbjct: 252 IDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDN 311
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +L+AC+ G + +G+ ++ R V+
Sbjct: 312 FTVVSLLSACASLGALPQGRALHACIELRLVE 343
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++ ++ IF+ L + + +I G+ A+ LF+ M G++ V+
Sbjct: 1084 YACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTF 1143
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
+ + C G+ E+G+ + M+A R + P E H+ACMV LL +
Sbjct: 1144 LCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSR 1188
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ G + A + + PV+D SW +LI Y A++ F+ M +G+ V+ I
Sbjct: 123 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 182
Query: 70 GVLTACS 76
GVL+ACS
Sbjct: 183 GVLSACS 189
>gi|414884271|tpg|DAA60285.1| TPA: hypothetical protein ZEAMMB73_421255 [Zea mays]
Length = 686
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++GR+ +A +FD + +D S+ ++I GYGM G+ V++ F+ M + G+
Sbjct: 438 IDMYSKSGRLSVAQNVFDTMDDRDMISFTSMIAGYGMQGKGIVSLRFFKQMIDSGIMPDA 497
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
+ + VL+ACS GLV++G++ FD+M + +KP HY+CMV L
Sbjct: 498 IIMVTVLSACSHSGLVDEGEELFDKMVSSYGIKPQMEHYSCMVDL 542
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A ++FD + +D SW ++I GY G+ A+ LF M+ +G E
Sbjct: 201 VSMYAKCGDLAAARRVFDGMDNRDVVSWNSMISGYAASGQWREAVELFRQMQAEGAEANS 260
Query: 66 VS 67
V+
Sbjct: 261 VT 262
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDR--LPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + G +D A ++F+ L +D +SW LI GYG+ G A+ LF M+ +GVE
Sbjct: 376 MDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEP 435
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +L+ACS GL+++G+K F +M +V+P HYACMV +L
Sbjct: 436 NDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDML 482
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A +FDR+ ++ SW +++ GY G A++LF M+ + PV+
Sbjct: 278 YAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTA 337
Query: 69 IGVLTACSLGGLVEKGKKFFD 89
+ +++ACS G G+K +
Sbjct: 338 LIMVSACSYLGSKHLGRKLHN 358
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A+++FDR+ ++D W +I Y A+ LF M+E+G
Sbjct: 174 VDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDE 233
Query: 66 VSHIGVLTA 74
++ I V +A
Sbjct: 234 ITAISVASA 242
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD +P KD SW +I GYGM G + AI+ F MR G+E
Sbjct: 814 VDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDE 873
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
S +L ACS GL+ +G KFF+ M+ V+P HYAC+V LL +
Sbjct: 874 SSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLAR 921
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A +F ++PVKD SW T+I GY + A+ LF M++ ++ P
Sbjct: 714 INMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK---QFKP 770
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
++ VL AC+ ++KG++ + R ++ H AC
Sbjct: 771 DDITMACVLPACAGLAALDKGREIHGHILRRGYF-SDLHVAC 811
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G ++ A ++F ++ SW + I Y G AI LF+ M+ GV
Sbjct: 613 LDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDI 672
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ ++ AC+ ++KG+
Sbjct: 673 YTVTSIVHACACSSSLDKGR 692
>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 520
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +D A +F++LP +D SW ++I YG G+ A+ LFE +++
Sbjct: 375 LDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQSKASPDA 434
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQKAR 118
V+ + VL+ACS GLV+KG +F++M +KP HY+C++ LL + ++++
Sbjct: 435 VTFLAVLSACSHAGLVDKGYYYFNQMITNYGIKPGLEHYSCLIDLLGRIQEQSQ 488
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G++ A IF LP + W +I GY +G+ A+++++ M+ V+
Sbjct: 274 IELYFKCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDMYDEMKIASVKPDA 333
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
V+ +L+ACS +EKGK+ + + +++ E
Sbjct: 334 VTFSSILSACSQLAALEKGKEIHNCITKNDLETNE 368
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +DLA IF+++P K +W +LI GY + I LF M +G +
Sbjct: 173 VDMYGKFGCLDLAKDIFEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTV 232
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ +L ACS ++ G +F RN
Sbjct: 233 TTLSSILLACSRAAHLQHG-RFIHGYAVRN 261
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ + + A ++FD +P +D A W T+I Y G+ + A+ +F MR+ G E
Sbjct: 72 VSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDSGFEPNS 131
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ V+++C+ +E+GK+ E+
Sbjct: 132 VTLTTVISSCARLLDLERGKEIHREV 157
>gi|222639882|gb|EEE68014.1| hypothetical protein OsJ_25982 [Oryza sativa Japonica Group]
Length = 594
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F+R+P+++ SW LI GYG G AI +FE + +G+
Sbjct: 317 VDLYCKWGLMEDARNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNH 376
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQKAR 118
V+ + VL AC G VE+GK+ F M Q + KP HYAC++ L + Q+ R
Sbjct: 377 VTFLAVLNACRFSGFVEEGKRIFQLMTQNQRTKPRAMHYACIIEL---FGQQGR 427
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A ++FD +P K +W +++ Y + G + A++L+ +M E GV+
Sbjct: 216 IDMYNKCGKLDEARRVFDGVPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQ 275
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +L S GL+E K+
Sbjct: 276 FTFSTMLRVFSRLGLLEHAKQ 296
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR++ A +F R+ +D +W +I G G + F MR DG + P
Sbjct: 415 LDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNP 474
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS+I VLTACS L+ +G+ +FDEM+ N+ P HY CM+ LL
Sbjct: 475 VSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLL 520
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 52/92 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FD++ V+D ++ ++I GY G+L A+ LF MR +
Sbjct: 314 IDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDN 373
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +L+AC+ G + +G+ ++ R V+
Sbjct: 374 FTVVSLLSACASLGALPQGRALHACIELRLVE 405
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++ ++ IF+ L + + +I G+ A+ LF+ M G++ V+
Sbjct: 1146 YACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTF 1205
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
+ + C G+ E+G+ + M+A R + P E H+ACMV LL +
Sbjct: 1206 LCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSR 1250
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ G + A + + PV+D SW +LI Y A++ F+ M +G+ V+ I
Sbjct: 185 AKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVI 244
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
GVL+ACS +E G ++ + + +E
Sbjct: 245 GVLSACSQLKDLELGCSLHSLVKEKGMSMSEN 276
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ +F+R+ KD ASW +I+GYGM G + A+ +F M E ++
Sbjct: 306 IDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDE 365
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +GVL+ACS G V +G+ F +M+++ +V PT HY C++ +L + Q
Sbjct: 366 VTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQ 416
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A F+ LP++D W ++ GY +G+ ++ + F M ++ V
Sbjct: 98 VNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSR 157
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ G+L+ ++ G + G+
Sbjct: 158 FTVTGILSVFAVMGDLNNGR 177
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G I+ A ++FD + + +SW +I G+ M G+ + A +LF MR++G
Sbjct: 337 LLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG 396
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ ++ +G+L+ACS G+++ G+ F M Q + P HY CM+ LL
Sbjct: 397 IDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLL 447
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A K+FD + VKD SW +I GY A+ L++ M + V+ +
Sbjct: 141 YASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQ 92
+ V++AC+ G +E G++ ++
Sbjct: 201 VTVVSACAQSGSIELGRQLHSWIE 224
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ++ A +F L KD SW TLI G+ + A+ LF+ M G
Sbjct: 239 IDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPND 298
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ G ++ G+
Sbjct: 299 VTMLSVLPACAHLGAIDIGR 318
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR++ A+K+FDR + S+ LI GY G ++ A LF+ + V +
Sbjct: 107 ISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWN 166
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
G + C+ +E + +M NVKP E+
Sbjct: 167 AMISGYVETCNFKEALE----LYKDMMKTNVKPDES 198
>gi|242043238|ref|XP_002459490.1| hypothetical protein SORBIDRAFT_02g005450 [Sorghum bicolor]
gi|241922867|gb|EER96011.1| hypothetical protein SORBIDRAFT_02g005450 [Sorghum bicolor]
Length = 395
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++LA ++FDR+P +D ASW ++L G + +++LF+ M R + V
Sbjct: 61 VDLYGKCGAVELARQVFDRMPERDLASWNAMVLALANHGRVRDSLDLFDRMTRVENVRPN 120
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL+AC+ GGLVE+G+++F M + ++P HY C+V +L +
Sbjct: 121 AITFVAVLSACNYGGLVEEGRRYFAAMVSEYGIRPRIEHYGCLVDILAR 169
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F + K SW +I G M G ++A+ LF MR++G E
Sbjct: 408 IDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDD 467
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS GLVE G++ F M + ++ P HY CM+ LL
Sbjct: 468 ITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLL 513
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
YT G +D A ++F+ +PV+D+ SW +I GY G + A+ F+ M+ V +
Sbjct: 208 YTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTM 267
Query: 69 IGVLTACSLGGLVEKGK 85
+ VL+AC+ G +E G
Sbjct: 268 VTVLSACAQSGSLELGN 284
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G +D A +F+ + KD SW +I GY + A+ LF M++
Sbjct: 301 LVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
VE V+ + +L AC+ G ++ GK
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGK 385
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
++ Y + G + A +F + ++D+ S+ LI GY + G LD A LFE + D V +
Sbjct: 174 INMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWN 233
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ + G E+ FF EM+ NV P E+
Sbjct: 234 -----AMIAGYAQSGRFEEALAFFQEMKRANVAPNES 265
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I LA ++F+ + KD +W T+I G + G + A LF+ M+E GVE
Sbjct: 256 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPND 315
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS G+V++G+K D M + ++P HY C++ LL +
Sbjct: 316 ITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLAR 363
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G+ D A +F +P +D SW +++ Y G+ + A+ LF+ MR GV+ + + +L
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221
Query: 73 TACSLGGLVEKG 84
+AC+ G ++KG
Sbjct: 222 SACAHLGALDKG 233
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR+D A +F R+ +D +W +I G G A+ F MR DG +
Sbjct: 414 LDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNS 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS+I VLTACS L+ +G+ +FDEM+ N+ P HY CM+ LL
Sbjct: 474 VSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLL 519
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 53/92 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FD + V+D ++ +++ GY G+L A+ LF +MR +
Sbjct: 313 IDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDN 372
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +LTAC+ G +++G+ ++ R V+
Sbjct: 373 FTVVNLLTACASLGALQQGRALHACIEQRLVE 404
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 21 IFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80
+ + PV+D SW +LI Y A+ F+ M G+ V+ I VL+AC+
Sbjct: 195 LLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKD 254
Query: 81 VEKGKKFFDEMQARNVKPTET 101
+E G+ ++ + + +E
Sbjct: 255 LELGRSLHLLVEEKGMPTSEN 275
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGEL-DVAINLFEAMREDGVEYY 64
+ Y R G A + FD + VKD+ +W LI G +G L D + L +A D + +
Sbjct: 149 IHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISW- 207
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
++ A S + F M + + P E
Sbjct: 208 ----TSLIAAYSRANRAREAVGCFKTMLSHGIAPDE 239
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+ A IFD +P ++ SW +I GY M G+ A+ LF +M++ +
Sbjct: 331 VDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDL 390
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ VL ACS GL E+G+++F+EM Q + P HYACMV LL
Sbjct: 391 VTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLL 436
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R G A +FDR+P K+ W LI GY G+ + A L E MR GVE
Sbjct: 59 LHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNV 118
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
++ G+++ + G M + P T +C
Sbjct: 119 ITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSC 158
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR D ++F D AS L+ G ++ A+ LF GVE
Sbjct: 195 IDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNV 254
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS ++ C G + F MQ+ V+P C++
Sbjct: 255 VSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVL 296
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ + K F + KD+ SW ++ Y M G+ ++A+ LF M+E V
Sbjct: 645 IDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDS 704
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
VS+I VL+AC GL+++G F M + +V+P+ HYACMV LL
Sbjct: 705 VSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLL 750
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+D Y + G + A ++FDR+ V+D SW T++ GY G + L MR V+
Sbjct: 240 IDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVK 296
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +D A +FD++PVKD W +I G A+ +F M+ +G E
Sbjct: 141 IDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDK 200
Query: 66 VSHIGVLTACS 76
VS + + A S
Sbjct: 201 VSILNLAPAVS 211
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M+ + Y R A +F+R+ +KD W TLI G+ G+ +A+ +F ++ G
Sbjct: 437 MVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSG 496
Query: 61 VEYYPVSHIGVLTACSL 77
+ + +G+ +AC++
Sbjct: 497 ILPDSGTMVGLFSACAI 513
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G + ++F VKD SW +I GY G + AI+ F M+ + V
Sbjct: 543 MDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPN 602
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ + +L A S ++ + F
Sbjct: 603 LVTFVTILPAVSYLSILREAMAF 625
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G I+ A ++FD + + +SW +I G+ M G+ + A +LF MR++G
Sbjct: 360 LLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG 419
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ ++ +G+L+ACS G+++ G+ F M Q + P HY CM+ LL
Sbjct: 420 IDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLL 470
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A K+FD +PVKD SW +I GY G A+ LF+ M + V +
Sbjct: 164 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 223
Query: 69 IGVLTACSLGGLVEKGKK 86
+ V++AC+ G +E G++
Sbjct: 224 VTVVSACAQSGSIELGRQ 241
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A +F+ L KD SW TLI GY + A+ LF+ M G
Sbjct: 257 IVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 316
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G ++ G+
Sbjct: 317 ESPNDVTMLSILPACAHLGAIDIGR 341
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ +F+R+ KD ASW +I+GYGM G + A+ +F M E ++
Sbjct: 386 IDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDE 445
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +GVL+ACS G V +G+ F +M+++ +V PT HY C++ +L + Q
Sbjct: 446 VTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQ 496
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A F+ LP++D W ++ GY +G+ ++ + F M ++ V
Sbjct: 178 VNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSR 237
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ GVL+ ++ G + G+
Sbjct: 238 FTVTGVLSVFAVMGDLNNGR 257
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I+ A +IF+ + KD SW +++ + G+ D + L + M G++
Sbjct: 279 IDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDL 338
Query: 66 VSHIGVLTACS 76
V+ VL ACS
Sbjct: 339 VTVTTVLPACS 349
>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Glycine max]
Length = 723
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R+GR+ A K+FD L +D ++ ++ILGYGM GE + + LFE M + ++
Sbjct: 461 VDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDH 520
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VLTACS GLV +G+ F M + P HYACM L
Sbjct: 521 VTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLF 566
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ Y R G++++A +FD +P +DS SW T+I Y G A LF +M+E+GVE
Sbjct: 224 VSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVE 280
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R + A +F R K +W ++ GY + + LF M ++G+E
Sbjct: 359 ITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNY 418
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
V+ VL C+ ++ GK+F
Sbjct: 419 VTIASVLPLCARIANLQHGKEF 440
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F+ LP ++ +W T+I G M G ++ FE M GV
Sbjct: 278 IDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSD 337
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V++IG+L+ACS GLV +G+ FFD M + ++P HY CMV LL
Sbjct: 338 VTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLL 383
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G +++A +FD +P + SW +I GY G A+ +F M+ V
Sbjct: 177 IDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNY 236
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL A S G +E GK
Sbjct: 237 VTLVSVLPAMSRLGALELGK 256
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88
D W +I GY +GEL+VA NLF+ M + V + V ++ + G ++ + F
Sbjct: 169 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNV----MIAGYAQSGHFKEAVEVF 224
Query: 89 DEMQARNVKPTETHYACMVYLL 110
EMQ V P Y +V +L
Sbjct: 225 REMQMAEVPPN---YVTLVSVL 243
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ A +F+RLP ++ +W +I G+ + G+ AI+ F MR+ GV
Sbjct: 310 IDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSD 369
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMV 107
V++I +LTACS GLVE+G+++F +M ++P HY CMV
Sbjct: 370 VAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 412
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELD--VAINLF-EAMREDGVEYYPVSHIGV 71
+D A+KIF+++P ++ SW T+I G+ E +AI LF E M ++ +E + V
Sbjct: 68 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127
Query: 72 LTACSLGGLVEKGKKF 87
L AC+ G +++GK+
Sbjct: 128 LKACAKTGKIQQGKQI 143
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G A +FD++ + SW T+I GY G A+ +F M++ G + P
Sbjct: 208 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKK-GEDIRP 266
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + VL A S G +E G+
Sbjct: 267 NYVTLVSVLPAVSRLGSLELGE 288
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+ID A K+FDR+ + SW T+I+ YG+ G A+ LF+ M+ +G++
Sbjct: 468 IDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDD 527
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ I +++ACS GLV +GK +F+ M Q + P HYACMV LL
Sbjct: 528 VTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLL 573
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGML-GELDVAINLFEAMREDGVEYY 64
+DFY + G +D A ++FD++ +D +W ++I G+ + G D L M+ D V
Sbjct: 161 VDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPN 219
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ +GVL A + + GK+
Sbjct: 220 SSTIVGVLPAVAQVNSLRHGKE 241
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I+ A + F+ + ++D+ S+ +I GY G + + +F M+ G+
Sbjct: 367 LSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEK 426
Query: 66 VSHIGVLTACS-LGGL 80
+ VL AC+ L GL
Sbjct: 427 ATLASVLPACAHLAGL 442
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
E +D Y + +A +FD++P K+ W LI Y G + AI+L+ M G
Sbjct: 55 EKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYG 114
Query: 61 VEYYPVSHIGVLTACS 76
+ + VL ACS
Sbjct: 115 ITPNRFTFPFVLKACS 130
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A++ F +P + SW +I GY G A+ LF M DGV
Sbjct: 528 VNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNH 587
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL AC+ GLV +GK++F++M+ +KPT+ HYACM+ LL
Sbjct: 588 ITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLL 633
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I LD Y + ID A+KIF+ +D ++ ++I Y G+ + A+ L+ M++
Sbjct: 422 VINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDAD 481
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKF 87
++ P +L AC+ E+GK+
Sbjct: 482 IKPDPFICSSLLNACANLSAYEQGKQL 508
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ +D A + +D +P KD +W LI GY G+ A++LF M + +++
Sbjct: 326 VDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQ 385
Query: 66 VSHIGVLTA 74
+ VL +
Sbjct: 386 TTLSTVLKS 394
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ A +F + D SW +I G + D+A+ L + M+ G
Sbjct: 225 VDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNM 284
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ L AC+ G E G++ +
Sbjct: 285 FTLSSALKACAAMGFKELGRQLHSSL 310
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y++ R A K+ D D SW +L+ GY G ++ A+ +F M GV+ +
Sbjct: 25 LYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFT 84
Query: 68 HIGVLTACSLGGLVEKGKK 86
VL ACS+ + G+K
Sbjct: 85 FPSVLKACSMKRDLNMGRK 103
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ GRI A KIFD L KD SW +I GY G AI +F+ M + G +
Sbjct: 570 ITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDY 629
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
+S++ VL++CS GLV++GK +FD ++ NV P H++CMV LL +
Sbjct: 630 ISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLAR 677
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ Y + G + A ++F R+P +D SW TL+ GY G A+ F +MR G
Sbjct: 102 MNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSG 156
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
+LI Y G L A ++F +M E + VS G+LTA S G + K ++FFD M R
Sbjct: 435 SLISMYAKCGNLQNAESIFSSMEERDI----VSWTGMLTAYSQVGNIGKAREFFDGMSTR 490
Query: 95 NV 96
NV
Sbjct: 491 NV 492
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + R G +D A+K F ++ +++ GY +D A+ LFE+M E V
Sbjct: 204 VDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDV---- 259
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
VS +++A S G + +M R V+ T Y
Sbjct: 260 VSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTY 297
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++ +D A ++F+ +P +D SW ++ G A+++ M GV ++
Sbjct: 238 YAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTY 297
Query: 69 IGVLTACS 76
LTAC+
Sbjct: 298 TSSLTACA 305
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y+R G ++ A ++F + +D S+ TLI G+ G AINL M+E G+E V+
Sbjct: 280 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 339
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
IGVLTACS GL+E+G+K F+ ++ P HYACMV LL
Sbjct: 340 FIGVLTACSHAGLLEEGRKVFESIK----DPAIDHYACMVDLL 378
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
Y R G +D A K+F+ +P ++ +W ++I GY G+ +AI LF+ M + V+
Sbjct: 179 YMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVT 238
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
+ V++AC G +E G + +K + + + M+++
Sbjct: 239 MVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 280
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A +FD +P ++ +W ++ GY + +L+ A F+ M E V VS +L+ +
Sbjct: 93 AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQ 148
Query: 78 GGLVEKGKKFFDEM 91
GL E+ + FDEM
Sbjct: 149 NGLAEEALRLFDEM 162
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + ++ A + FD +P + SW ++ GY G + A+ LF+ M G V+
Sbjct: 115 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML--GAYRNSVTW 172
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+++A G ++ +K F+ M RNV
Sbjct: 173 NAMISAYMRVGDLDSARKLFNTMPGRNV 200
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y+R G ++ A ++F + +D S+ TLI G+ G AINL M+E G+E V+
Sbjct: 406 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 465
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
IGVLTACS GL+E+G+K F+ ++ P HYACMV LL
Sbjct: 466 FIGVLTACSHAGLLEEGRKVFESIK----DPAIDHYACMVDLL 504
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
LD Y + G +D A K+F+ +P ++ +W ++I GY G+ +AI LF+ M +
Sbjct: 302 LDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 361
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
V+ + V++AC G +E G + +K + + + M+++
Sbjct: 362 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 406
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A +FD +P ++ +W ++ GY + +L+ A F+ M E V VS +L+ +
Sbjct: 182 AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQ 237
Query: 78 GGLVEKGKKFFDEMQARNVKPTETHYACMV 107
GL E+ + FDEM ++P ET + ++
Sbjct: 238 NGLAEEALRLFDEMVNAGIEPDETTWVTVI 267
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + ++ A + FD +P + SW ++ GY G + A+ LF+ M G+E +
Sbjct: 204 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTW 263
Query: 69 IGVLTACSLGG 79
+ V++ACS G
Sbjct: 264 VTVISACSSRG 274
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 9 YTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ A K+F+ L +D+ SW ++I+ G + AI LFE M G++ ++
Sbjct: 419 YAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHIT 478
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++GVL+AC+ GGLVE+G+ +FD M+ + PT +HYACMV L
Sbjct: 479 YVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLF 522
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G+++ A+++FD +PV+DS SW T+I+GY +G + AI +F M +D V
Sbjct: 48 LSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQ 107
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL +C+ G GKK
Sbjct: 108 FTLTNVLASCAATGSRGIGKK 128
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y +TG + +A +FDR+ +++++SW +I + G +D+A+ FE + E +
Sbjct: 149 LNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDI---- 204
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE-MQARNVKP 98
VS ++ C+ G + +FF ++ ++KP
Sbjct: 205 VSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFE--AMREDGVEY 63
++ Y +TG A+ +F+ +PVK + SW T++ GY G+L+ A +F+ +R+
Sbjct: 17 MNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRD----- 71
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++ + G E K F +M V PT+
Sbjct: 72 -SVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQ 107
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G I A +IF+ L D +W +I+GY G + AI +F+ M +G
Sbjct: 315 LNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNS 374
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +L+A S + GK+
Sbjct: 375 FTLAAMLSASSSVTSLNHGKQ 395
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ +F+R+ KD ASW +I+GYGM G + A+ +F M E ++
Sbjct: 386 IDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDE 445
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +GVL+ACS G V +G+ F +M+++ +V PT HY C++ +L + Q
Sbjct: 446 VTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQ 496
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A F+ LP++D W ++ GY +G+ ++ + F M ++ V
Sbjct: 178 VNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSR 237
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ G L+ ++ G + G+
Sbjct: 238 FTVTGXLSVFAVMGDLNNGR 257
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I+ A +IF+ + KD SW +++ + G+ D + L + M G++
Sbjct: 279 IDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDL 338
Query: 66 VSHIGVLTACS 76
V+ VL ACS
Sbjct: 339 VTVTTVLPACS 349
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G I K+FDR+ KD SW T++ G+ + G++ A+ LF+ M G
Sbjct: 314 LLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYG 373
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDE-MQARNVKPTETHYACMVYLL 110
+E ++ + +L+ CS GL +GK+ F MQ V+P+ HYAC+V +L
Sbjct: 374 IEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDIL 424
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G D K+F+ +P ++ SW TLI G+ G + ++ F M+ +G+ +
Sbjct: 218 LGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSW 277
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
++ +L C+ + GK+ ++
Sbjct: 278 ITLTTMLPVCAQVTALHSGKEIHGQI 303
>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
Length = 913
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A ++F +P ++ SW T+I G G G A+ +FE MR GVE
Sbjct: 572 VDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDE 631
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQ 115
V+++ +L+ACS GLV++ +++F ++ R V+P HYACMV LL + +
Sbjct: 632 VTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGE 682
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE--- 62
+D Y + GR+ +A ++F+RL K++ W T+++G+ G++ A+ LF G
Sbjct: 471 VDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADA 530
Query: 63 YYPVSHIGVLTACSLGGLVEKGKK 86
+ S +GVL + LVE+G++
Sbjct: 531 HVLSSIVGVLADFA---LVEQGRQ 551
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR 57
+D Y + G +D+A ++F + ++ SW L++G+ G+ + L MR
Sbjct: 259 IDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMR 310
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y+R G ++ A ++F + +D S+ TLI G+ G AINL M+E G+E V+
Sbjct: 438 MYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 497
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
IGVLTACS GL+E+G+K F+ ++ P HYACMV LL
Sbjct: 498 FIGVLTACSHAGLLEEGRKVFESIK----DPAIDHYACMVDLL 536
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
YTR G +D A ++F+ +P ++ +W ++I GY G+ +AI LF+ M + V+
Sbjct: 337 YTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVT 396
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
+ V++AC G +E G + +K + + + M+++
Sbjct: 397 MVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 438
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A +FD +P ++ +W ++ GY + +L+ A F+ M E V VS +L+ +
Sbjct: 182 AQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV----VSWNAMLSGYAQ 237
Query: 78 GGLVEKGKKFFDEMQARNVKPTETHYACMV 107
GL E+ + FDEM ++P ET + ++
Sbjct: 238 NGLAEEVLRLFDEMVNAGIEPDETTWVTVI 267
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + ++ A + FD +P + SW ++ GY G + + LF+ M G+E +
Sbjct: 204 YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTW 263
Query: 69 IGVLTACSLGG 79
+ V++ACS G
Sbjct: 264 VTVISACSSRG 274
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
LD Y + G I A +IFD L ++S +W +I Y +G LD A LF M V
Sbjct: 302 LDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNV--- 358
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTE 100
V+ ++ + G + F EM A+ + P E
Sbjct: 359 -VTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 394
>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
Length = 749
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I + + FD+L +K+ +W +I YGM G A+ LF M+ G++ P
Sbjct: 494 VDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNP 553
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL ACS GGLVE+G F M Q ++P HY+CMV +L
Sbjct: 554 VTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDML 599
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I++A ++F R+ +D SW T+I G+ G+ D AI +++ M D V+
Sbjct: 393 IDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNV 452
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ I +L ACS+ +++ K
Sbjct: 453 ITIINLLEACSVTAELKRSK 472
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 38/70 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ A K+F+ + +++ SW +++ G+ + A +L +MR++ VE
Sbjct: 292 IDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDE 351
Query: 66 VSHIGVLTAC 75
V+ + +L C
Sbjct: 352 VTLVNILQIC 361
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F + K SW +I G M G ++A+ LF MR++G E
Sbjct: 408 IDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDD 467
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS GLVE G++ F M + ++ P HY CM+ LL
Sbjct: 468 ITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLL 513
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
YT G +D A ++F+ +PV+D+ SW +I GY G + A+ F+ M+ V +
Sbjct: 208 YTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTM 267
Query: 69 IGVLTACSLGGLVEKGK 85
+ VL+AC+ G +E G
Sbjct: 268 VTVLSACAQSGSLELGN 284
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G +D A +F+ + KD SW +I GY + A+ LF M++
Sbjct: 301 LVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN 360
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
VE V+ + +L AC+ G ++ GK
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGK 385
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
++ Y + G + A +F + ++D+ S+ LI GY + G LD A LFE + D V +
Sbjct: 174 INMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWN 233
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ + G E+ FF EM+ NV P E+
Sbjct: 234 -----AMIAGYAQSGRFEEALAFFQEMKRANVAPNES 265
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G + A +IFD + +D SW ++I YG G A++LFE M G+E
Sbjct: 335 MDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDS 394
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GL+ GK +FD M +R ++ P HY CMV LL
Sbjct: 395 IAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLL 440
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFE 54
+ Y+R GR + A ++FD +P +D SW +I G+ +G D AI +F+
Sbjct: 165 ISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFK 213
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ GRI A K+FD L VKD SW +I GY G AI +F+ + + G +
Sbjct: 546 ITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDY 605
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
+S++ VL+ CS GLV++GK +FD M+ N+ P H++CMV LL
Sbjct: 606 ISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLL 651
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y +T +D A ++FD +P +D SW ++ G + A+++ M+ GV ++
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
LTAC+ + GK+ ++ RN+ + + A
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQV-IRNLPCIDPYVA 308
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + R G +DLA+++F R+ ++++GY +D A+ LF++M E V
Sbjct: 180 VDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDV---- 235
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
VS +++A S G V + +MQ++ V+ T Y
Sbjct: 236 VSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
L+ Y + GR+ A ++F R+P +D ASW TL+ GY + ++ F +M G
Sbjct: 78 LNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSG 132
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R G ID + K+FD +P ++ +W LI G + G A+ F M E G++
Sbjct: 238 IDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDR 297
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL ACS GGLVE+G++ F M + ++P HY CMV LL
Sbjct: 298 IAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLL 343
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 37/128 (28%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-------E 58
++ Y +G + + K+FD +P +D SW +LI + G D A+ LF+ M+
Sbjct: 135 INSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILP 194
Query: 59 DGVEYYPV--------------------SHIGVLTACSLG----------GLVEKGKKFF 88
DGV V S IGV SLG G +++ K F
Sbjct: 195 DGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVF 254
Query: 89 DEMQARNV 96
DEM RNV
Sbjct: 255 DEMPHRNV 262
>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
Length = 749
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I + + FD+L +K+ +W +I YGM G A+ LF M+ G++ P
Sbjct: 494 VDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNP 553
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL ACS GGLVE+G F M Q ++P HY+CMV +L
Sbjct: 554 VTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDML 599
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I++A ++F R+ +D SW T+I G+ G+ D AI +++ M D V+
Sbjct: 393 IDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNV 452
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ I +L ACS+ +++ K
Sbjct: 453 ITIINLLEACSVTAELKRSK 472
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 38/70 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ A K+F+ + +++ SW +++ G+ + A +L +MR++ VE
Sbjct: 292 IDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDE 351
Query: 66 VSHIGVLTAC 75
V+ + +L C
Sbjct: 352 VTLVNILQIC 361
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ G I+ A K+F R +D SW ++I GYG G+ A+ +F+ M+ G+
Sbjct: 548 LTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDD 607
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
V+ IGVLTAC+ GLVE+G+K+F+ M + ++ HY+CMV L
Sbjct: 608 VTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDL 652
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y +TG + + ++F +P KD +W ++ G + + A+ +F + ++GV+
Sbjct: 446 LDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNE 505
Query: 66 VSHIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPTETHYACMVY-LLIKYNQKAR 118
+ V+ AC S VE GK ++ A VK +++ C+ LL Y++K
Sbjct: 506 YTFSSVINACSSSAATVEHGK----QIHATAVKSGKSNALCVSSALLTMYSKKGN 556
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +T + IFD + +K+ SW +L+ GY G D I+L M+ +GV
Sbjct: 146 VDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNG 205
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ VL A + ++E G
Sbjct: 206 FTFATVLGALADESIIEGG 224
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++ + A +FD + V+DS +W +I GY +G +F MR GV+
Sbjct: 250 YLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVF 309
Query: 69 IGVLTACS 76
L CS
Sbjct: 310 CTALKLCS 317
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A +F+RL VK SW +I GY M G A++LFE M +
Sbjct: 319 VDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDH- 377
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS GGL+E+G FF+ M + + PT HY CMV LL
Sbjct: 378 ITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLL 423
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 41/82 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD++ V+D+ W +++ Y G D ++L M G+
Sbjct: 218 IDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTE 277
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ + ++A + + +G++
Sbjct: 278 ATLVTAISASADNAALPQGREL 299
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + A +FDR+P + W LI GY G + A+ L+ M + G+
Sbjct: 117 VNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDN 176
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ VL AC+ +E G++ + +
Sbjct: 177 FTFPFVLKACAALSAIEHGREIHEHV 202
>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G + + ++FD + +D SW +LI YGM G AI +FE M GV
Sbjct: 328 ITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSY 387
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
+S I VL ACS GLVE+GK F+ M ++ + P HYACMV LL + N+
Sbjct: 388 ISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANR 438
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + AN +F +P K+ SW +I + A+ LF+ M + P
Sbjct: 225 LDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVP 284
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ +E+GK
Sbjct: 285 NSVTMVNMLQACAGLAALEQGK 306
>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
Length = 690
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A + F +P ++ SW +I G G G AI+LFE M+ +GVE
Sbjct: 350 VDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADE 409
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+++ +L+ACS GLV++ +++F + Q R ++P HYACMV LL
Sbjct: 410 VAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLL 455
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ +A ++FD +P ++ SW L++G+ GE + LF MR G
Sbjct: 46 IDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNE 105
Query: 66 VSHIGVLTACSLG 78
+ L AC G
Sbjct: 106 FTLSATLKACGGG 118
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + R+ +A ++FD L +++ W T+I+G+ G++ A+ LF GV
Sbjct: 249 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 308
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + LVE+GK+
Sbjct: 309 HVLSSVVAVFADFALVEQGKQ 329
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVSHIGVLTACS 76
A ++FD +P ++ A+W ++I GY G+ ++ +F M R + + +L ACS
Sbjct: 157 ARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACS 216
Query: 77 LGGLVEKGKKFFDEMQARNVKP 98
G +G + M R V P
Sbjct: 217 GLGAAREGAQVHAAMAVRGVSP 238
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A +FD++ +DS SW +I YG+ G + A++LF MRE V+
Sbjct: 348 IDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDH 407
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ +L+A S GLVEKG+ +F M ++P+E HYACMV LL
Sbjct: 408 ATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLL 453
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G++D A ++FD++ +D W T+I G G+ A++++ M + VE
Sbjct: 147 LNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDG 206
Query: 66 VSHIGVLTACSLGGLVEKG 84
V +G++ AC+ G + G
Sbjct: 207 VVMLGLIQACTTLGHSKMG 225
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++LA+ +F R+ K+ SW LI G+ G A+ L M+ G +
Sbjct: 248 VDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDS 307
Query: 66 VSHIGVLTACSLGGLVEKGK 85
VS + VL ACS G ++ GK
Sbjct: 308 VSLVSVLLACSQVGFLKLGK 327
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G I+ A ++FD+ P +W +I+ Y G + A++L+ M +GV ++
Sbjct: 49 YARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTY 108
Query: 69 IGVLTACS 76
VL AC+
Sbjct: 109 TVVLKACT 116
>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
Length = 653
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I+ A ++F +P ++ SW +I GYG G AI LF+ M+ D E
Sbjct: 319 LDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDD 378
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+++ VL CS GLVEKG+++F + + +K HYACMV LL
Sbjct: 379 VTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLL 424
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A +F+ +PV++ SW +I GY + G + A+ LF+ M+E G
Sbjct: 115 IDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDE 174
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ L ACS G +++G +
Sbjct: 175 FTFTSTLKACSDLGAIKEGNQ 195
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE--- 62
+D Y + G++ +A ++F + K SW LILGY G L ++ LF +RE ++
Sbjct: 218 IDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDG 277
Query: 63 YYPVSHIGVLTACSLGGLVEKGKK 86
+ S +GV + LV++GK+
Sbjct: 278 FILSSMMGVFADFA---LVQQGKQ 298
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR+ +A +FDR+ ++ SW L+ G+ G ++ LF M GV+ +
Sbjct: 17 YGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTF 76
Query: 69 IGVLTACSLGGLVEKGKKFFD 89
L AC L ++ G++ D
Sbjct: 77 STNLKACGLLNGLDIGRQIHD 97
>gi|357447289|ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482968|gb|AES64171.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 801
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +IF+R+ KD SW +I G+G+ G+ AI+LF M +G
Sbjct: 354 VDVYAKCGFLDEAMEIFERMENKDVKSWTAVISGHGIHGQAINAISLFNRMENEGFRPNE 413
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + +LTACS GGLV +G +FF M Q P HY C++ LL
Sbjct: 414 ITFLAILTACSHGGLVTEGVEFFKRMVQEHGFSPWVEHYGCLIDLL 459
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG I LA K+FD + KD W LI Y ++ A+ L ++MR++GV+
Sbjct: 253 IDMYAKTGCIYLARKVFDGVVEKDVVLWNCLIKNYARSCLVEEAVALLQSMRQEGVKPNS 312
Query: 66 VSHIGVLTACSLGGLVE 82
+ +G+L+ S G ++
Sbjct: 313 STLVGLLSVYSASGSMQ 329
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L FY GRID A K+FD P + D SW L+ G ++ + +LF G+
Sbjct: 151 LQFYCVCGRIDDARKVFDECPERNDLVSWNILMGGCVLVSDYSFVFDLFLKRGCSGIRAS 210
Query: 65 PVSHIGVLTA 74
+ + +L+A
Sbjct: 211 VATTLSLLSA 220
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +DLA ++FD++P K SW ++I+GYG+ G D A+ +F M + G
Sbjct: 394 LTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPND 453
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ + VL+ACS G+V G +FD M + ++P HY C+V LL
Sbjct: 454 ATFMSVLSACSHSGMVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLL 499
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +IFD + +D +W ++I GY +G+++ A LF+ M V
Sbjct: 231 IDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDV---- 286
Query: 66 VSHIGVLTACSLGGL-----VEKGKKFFDEMQARNV 96
V C + G V KFFDEM RNV
Sbjct: 287 -----VSWNCMIDGFARIKDVSMAAKFFDEMPLRNV 317
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP-- 65
FY+ GR A +FD V D SW ++I GY GEL +A +F+ M E + +
Sbjct: 202 FYSVCGRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSM 261
Query: 66 -VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
++GV G +E + FD+M +R+V + CM+
Sbjct: 262 ISGYVGV-------GDMEAARGLFDKMPSRDV----VSWNCMI 293
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + R + +A K FD +P+++ SW ++ Y + + F+ M G ++ P
Sbjct: 293 IDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMV--GGDFVP 350
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
S + VLTAC+ ++++GK M+ +KP
Sbjct: 351 DEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKP 385
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A ++F+ +P +D+ +W ++I+G+G+ G D AI F M E GV
Sbjct: 253 IDMYAKCGSLDGALEVFNGMP-RDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNS 311
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
++ +G+L CS GLVE+G +FF +M ++ NVKP HY C+V
Sbjct: 312 IAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIV 354
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G +++A +FD +P +D +W +I Y G A+ +++ MR + V +
Sbjct: 155 YGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTL 214
Query: 69 IGVLTACSLGGLVEKGKKF 87
+G+L++CS G + G K
Sbjct: 215 VGLLSSCSHVGALNMGVKL 233
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G + A K+F+++PVKD A+W +ILG + G +A+ LFE M + G +
Sbjct: 264 IDFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNE 323
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +GVLTAC+ L + + F M + N+ P+ HY C+V +L + Q
Sbjct: 324 VTFVGVLTACNHKSLFGESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQ 374
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-----VEY 63
Y G ++ A +FD++P+++ AS+ ++ GY G + LF +++ +++
Sbjct: 161 YCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACLKF 220
Query: 64 YPVSHIGVLTACSLGGLVEKGK 85
+ VL AC++ G E+GK
Sbjct: 221 NGALLVSVLNACTMVGAFEEGK 242
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +IFDR+ ++D SW +I+G + G+ AI LFE M +G++
Sbjct: 382 VDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNH 441
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VLTACS GGLV++ K+F+ M + P HYA + LL
Sbjct: 442 VAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLL 487
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GRI A ++FD +P D SW LI GY G AI++F M ++ V V+
Sbjct: 495 YAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTF 554
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+GVL+ACS GL+++G FF+ M + ++P HYACMV LL
Sbjct: 555 VGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLL 597
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y R GRI A ++FDR+P ++ A+W ++ GY L ++ A LF M +
Sbjct: 236 LNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKN----S 291
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+S +++A GG +++ K D+M
Sbjct: 292 ISWTTMISALVRGGKLQEAKDLLDKM 317
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
TR G + A K FD +P +D SW ++ GY G++D A LF + V VS +
Sbjct: 178 TRNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNV----VSWV 233
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
+L G + + ++ FD + RNV
Sbjct: 234 TLLNGYCRAGRIGEARELFDRIPDRNV 260
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 9 YTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R G + LA DR+P K +A + +I GY G D A+ L M + +S
Sbjct: 114 YARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDI----IS 169
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VL + G + + KFFDEM AR++
Sbjct: 170 WNSVLVGLTRNGEMVRAVKFFDEMPARDM 198
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G +D A +F ++P KD SW T+I GY G++ A+ +F M + VS
Sbjct: 363 YVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNT----VSW 418
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
V++ GL + + F M+ + + YAC
Sbjct: 419 NSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYAC 455
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y R G +D A +F +P + SW+TL+ GY G + A LF+ + + V +
Sbjct: 205 LEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWN 264
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
V G L + E+ K F EM +N T + +V
Sbjct: 265 VMLSGYLRLSHM----EEAYKLFTEMPDKNSISWTTMISALV 302
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++ ID A IFD L V+D+ W T+I GY G LD A+ LF+ M + VS
Sbjct: 332 YLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDM----VSW 387
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ + G + K F +M RN
Sbjct: 388 NTMIAGYAHDGQMRKAVGIFRKMNQRNT 415
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R+G++ A ++FD +P +++ S+ ++ G + A LF+ + VS
Sbjct: 22 ARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNT----VSWN 77
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARN 95
++ ACS G V + FD M AR+
Sbjct: 78 AMIAACSDHGRVADARDLFDAMPARD 103
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
L R GRI A ++FD +P +++ SW +I G + A +LF+AM DG +
Sbjct: 49 LSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMPARDGFSWT 108
Query: 65 PVSHIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
++ +C + G + + D M P + AC ++ Y + R
Sbjct: 109 ------LMVSCYARAGELGLARDALDRM------PGDKCTACYNAMISGYAKHGR 151
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R ++ A K+F +P K+S SW T+I G+L A +L + M D
Sbjct: 267 LSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKT 326
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
G L + +++ + FD ++ R+
Sbjct: 327 ALMHGYLQS----KMIDDARLIFDGLEVRDA 353
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G+++LA ++F + + SW ++I+G+ G A+ FEAMR +G +
Sbjct: 189 IDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDA 248
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ GVLTACS GGL ++G +++D M+A + HY C+V LL + Q
Sbjct: 249 VTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQ 299
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G + A ++FD +P D SW LI G G D AI+ F AM DGVE V+ I
Sbjct: 93 RNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIA 152
Query: 71 VLTACS 76
V++AC+
Sbjct: 153 VISACA 158
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDL+ +IFD +P +D SW T+I GYG+ G A LF M+ E
Sbjct: 478 IDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDD 537
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ I +++ACS GLV +GK++F M + + P HY MV LL +
Sbjct: 538 VTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLAR 585
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ID A +FD++ VKD+ S+ L+ GY G+ D A +F M+ V+
Sbjct: 377 LSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDV 436
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ GK
Sbjct: 437 ATMVSLIPACSHLAALQHGK 456
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
LD Y + G + A+++F+ + V++ +W L+ G+ + G + A +LF+ M G+ +
Sbjct: 275 LDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLS 334
Query: 65 PVSHIGVLTACS 76
P S L AC+
Sbjct: 335 PTSVASALRACA 346
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F+ LP ++ +W T+I G M G ++ FE M GV
Sbjct: 301 IDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSD 360
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V++IG+L+ACS GLV +G+ FFD M + ++P HY CMV LL
Sbjct: 361 VTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLL 406
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G +++A +FD +P + SW +I GY G A+ +F M+ V
Sbjct: 200 IDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNY 259
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL A S G +E GK
Sbjct: 260 VTLVSVLPAMSRLGALELGK 279
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88
D W +I GY +GEL+VA NLF+ M + V + V ++ + G ++ + F
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNV----MIAGYAQSGHFKEAVEVF 247
Query: 89 DEMQARNVKPTETHYACMVYLL 110
EMQ V P +Y +V +L
Sbjct: 248 REMQMAEVPP---NYVTLVSVL 266
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I LA +F++ KD W +I G G DVA++LF M+ +G E
Sbjct: 288 VDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNG 347
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ + VL+ACS GL ++G K FD ++ R N++P H+ CMV LL +
Sbjct: 348 VTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFGCMVDLLAR 395
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEY 63
LD Y + G ++ A ++FD +D SW T++ G+ G LD+A F EA D + +
Sbjct: 156 LDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISW 214
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ G +DLA+K F P +D SW L+ GY E + LF M V V+
Sbjct: 190 FANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTA 249
Query: 69 IGVLTACSLGGLVEKGKK 86
+ +++A + G + +
Sbjct: 250 VTLISAVAGKGTLNSARS 267
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 66/107 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A +FD + KD+ +W +I+G+ + G ++ A+ LF M E V
Sbjct: 270 IDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNN 329
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ IGVL+AC+ GLV+ G++++ MQ +KP+ +Y CM+ LL +
Sbjct: 330 VTFIGVLSACAHSGLVDDGRRYWSIMQNLGIKPSMENYGCMIDLLCR 376
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L+ Y + ++ LA +FD + P K +W +I GY +G + A+ LF M+ GVE
Sbjct: 168 LNLYAKCEQVALARTVFDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGVEPD 227
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
V+ +GV++AC+ G ++ GK
Sbjct: 228 EVTMVGVISACAKAGALDLGK 248
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++++A K FDR+ K+ SW ++ GYGM G A+ +F M GV+
Sbjct: 251 IDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNY 310
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GL+E+G +F M +V+P HY CMV LL
Sbjct: 311 ITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLL 356
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A +FD + ++ SW ++I GY + A+ +F+ M E V
Sbjct: 118 VDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDV---- 173
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
+S ++ + G+ + + F M VK E +Y
Sbjct: 174 ISWNSIIAVYAQNGMSTESMEIFHRM----VKDGEINY 207
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G ++ A ++FDR+ +D ASW +LI YGM G+ A+ LF M+ G
Sbjct: 344 IDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDS 403
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +L+ACS GL+ +GK +F +M + P H+AC+V LL
Sbjct: 404 IAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLL 449
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G+++LA ++F + + SW ++I+G+ G A+ FEAMR +G +
Sbjct: 278 IDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDA 337
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ GVLTACS GGL ++G +++D M+A + HY C+V LL + Q
Sbjct: 338 VTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQ 388
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G + A ++FD +P D SW LI G G D AI+ F AM DGVE V+ I
Sbjct: 182 RNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIA 241
Query: 71 VLTACS 76
V++AC+
Sbjct: 242 VISACA 247
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++++A K FDR+ K+ SW ++ GYGM G A+ +F M GV+
Sbjct: 405 IDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNY 464
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GL+E+G +F M +V+P HY CMV LL
Sbjct: 465 ITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLL 510
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYY 64
+D Y + G + ++ ++FD + +D SW ++I Y G ++ +F M +DG + Y
Sbjct: 303 MDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYN 362
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ VL AC+ G GK D++
Sbjct: 363 AVTLSAVLLACAHSGSQRLGKCIHDQV 389
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEA--MREDGVE- 62
+D Y++ G + A +FD + ++ SW ++I GY + A+ LF+ + E G E
Sbjct: 194 VDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEG 253
Query: 63 -----YYPVSHIGVLTACS 76
P++ + VL+ACS
Sbjct: 254 DGEVCVDPIAMVSVLSACS 272
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ A +F ++P + S W +I +G+ G + A+ LF M+++GV+
Sbjct: 519 IDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDH 578
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ I +L+ACS GLV++GK FF MQ +KP+ HY CMV LL
Sbjct: 579 VTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLL 623
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
+D Y + G ID A+K+F+ +PVKD SW TLI GY G AI ++ M E ++
Sbjct: 417 MDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLN 476
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ + +L A + G +++G + + N+
Sbjct: 477 QGTWVSILAAYAHVGALQQGMRIHGHLIKTNL 508
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G + +A +FD +P +D SW +I G G A+++ + MR +G+
Sbjct: 214 IHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDS 273
Query: 66 VSHIGVLTACSLGG 79
V+ +L C+ G
Sbjct: 274 VTVASILPVCAQLG 287
>gi|357453201|ref|XP_003596877.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240912|gb|ABD32770.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485925|gb|AES67128.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A K+FD + ++ +W T++ +GM G + +F M E G
Sbjct: 151 INMYAKCGELEFARKVFDGMCERNEVTWSTMMADFGMHGRFEEVFEMFNRMVEVGERMDS 210
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
VS VLTACS GG VEKG++ F+ M+ R VKP HY CMV +L
Sbjct: 211 VSFTVVLTACSHGGFVEKGREIFEIMKVRFGVKPDVRHYTCMVDML 256
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID + +FDR+P KD SW +I G G A+ LFE G
Sbjct: 308 VDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVN 367
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVLTACS GLV +GK FF M ++P HY CMV LL
Sbjct: 368 VTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLL 413
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y R++ A ++FD +P +D SW ++I+G+ LG++ VA LF M E V
Sbjct: 175 IHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDV--- 231
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
+S +++ C G +EK +F E+ + ++P E A +V LL Q
Sbjct: 232 -ISWGTIISGCVQNGELEKALDYFKELGEQKLRPNE---AILVSLLAAAAQ 278
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G+I +A K+F +P KD SW T+I G GEL+ A++ F+ + E +
Sbjct: 210 FVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAIL 269
Query: 69 IGVLTACSLGGLVEKGKK 86
+ +L A + G +E GK+
Sbjct: 270 VSLLAAAAQLGTLEYGKR 287
>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
Length = 502
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A +F + V++ SW TLI YG+ G A+ ++E M GV+
Sbjct: 249 VDMYAKCGQVDGAQAVFASMKVRNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNC 308
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ I +L++CS GLV G++ F+ M + V+PT HYACMV LL
Sbjct: 309 ITFISILSSCSHSGLVSDGRRIFESMSKVHAVEPTADHYACMVDLL 354
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y +TG + A ++FD +P +D+ W ++ GY G + + LF + + V+
Sbjct: 145 LDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYARAGRSEETLELFRKAQIESVDMAR 204
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ VL C+ G + KG++ M
Sbjct: 205 DLRAVPNVLNVCANEGQLMKGREIHGRM 232
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT+ G ++ A K+FD + D SW +LI+GY G A LF MR GV+
Sbjct: 546 INMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNE 605
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ +G+LTACS G+VE+G K + MQ + PT+ H +CMV LL +
Sbjct: 606 ITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLAR 653
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
L Y + G + A +FD +P+K+ SW ++I GY GE D AI L+ M G
Sbjct: 140 LSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSG 194
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G ++ A +F + D +W +I G+ + + + F MR G+ V
Sbjct: 344 DMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDV 403
Query: 67 SHIGVLTACSLGGLVEKG 84
+ + +L ACS ++ G
Sbjct: 404 TVLSLLCACSEPVMLNHG 421
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT+ ++ A +F R+ +KD SW ++I G+ LG A+ F M V Y P
Sbjct: 241 ISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSV-YQP 299
Query: 66 VSHI--GVLTACS 76
+ +ACS
Sbjct: 300 NEFVFGSAFSACS 312
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I LA +F++ KD W +I G G DVA++LF M+ +G E
Sbjct: 405 VDMYCKCGSIKLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNG 464
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ + VL+ACS GL ++G K FD ++ R N++P H+ CMV LL +
Sbjct: 465 VTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFGCMVDLLAR 512
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEY 63
LD Y + G ++ A ++FD +D SW T++ G+ G LD+A F EA D + +
Sbjct: 273 LDMYAKCGEMNTAMRVFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISW 331
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ G +DLA+K F P +D SW L+ GY E + LF M V V+
Sbjct: 307 FANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDMLASSVIPDKVTA 366
Query: 69 IGVLTACSLGGLVEKGKK 86
+ +++A + G + +
Sbjct: 367 VTLISAVAGKGTLNSARS 384
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDS-ASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
LD Y++ G + +A +F+R+P K S SW ++I G M G + AI LF M E G+
Sbjct: 311 LDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPD 370
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQ 115
++ I +L ACS GL+EKG ++F +M+ N++P HY CMV L + Q
Sbjct: 371 GIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQ 422
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
YT+ G ++LA K+F +PVKD SW T+I+G+ G A F +++ G+ VS
Sbjct: 213 YTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSL 272
Query: 69 IGVLTACSLGGLVEKGK 85
G L+AC+ G +E GK
Sbjct: 273 TGALSACADAGAIEFGK 289
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM--REDGVEYYPVSH 68
R G + A+ +F+R+P ++ SW ++ GY GEL++A LF M ++D VS
Sbjct: 184 RCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDD------VSW 237
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ + G + FF E+Q ++P E
Sbjct: 238 STMIVGFAHNGFFYEAFGFFRELQQVGMRPNEV 270
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT+ G ++ A K+FD + D SW +LI+GY G A LF MR GV+
Sbjct: 546 INMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNE 605
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ +G+LTACS G+VE+G K + MQ + PT+ H +CMV LL +
Sbjct: 606 ITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLAR 653
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
L Y + G + A +FD +P+K+ SW ++I GY GE D AI L+ M G
Sbjct: 140 LSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSG 194
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G ++ A +F + D +W +I G+ + + + F MR G+ V
Sbjct: 344 DMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDV 403
Query: 67 SHIGVLTACSLGGLVEKG 84
+ + +L ACS ++ G
Sbjct: 404 TVLSLLCACSEPVMLNHG 421
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT+ ++ A +F R+ +KD SW ++I G+ LG A+ F M V Y P
Sbjct: 241 ISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSV-YQP 299
Query: 66 VSHI--GVLTACS 76
+ +ACS
Sbjct: 300 NEFVFGSAFSACS 312
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A K+F+ +P ++ SW ++I Y G A+++FE M G +
Sbjct: 364 IDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDD 423
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL+ACS GGLV +G+++F M+ + ++P HYACM+ LL
Sbjct: 424 ITLVGVLSACSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLL 469
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYY 64
+ FY G + LA +FD + +D SW ++I GY D A+ LF++M G VE
Sbjct: 192 VHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPN 251
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
V+ I VL++CS G + GK F + ++ RNV
Sbjct: 252 EVTMIAVLSSCSQKGDLILGKTFLEYVKTRNV 283
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ +F+R+ KD ASW +I+GYGM G + A+ +F M E ++
Sbjct: 386 IDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDE 445
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +GVL+ACS G V +G+ F +M+++ +V PT HY C++ +L + Q
Sbjct: 446 VTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQ 496
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A F+ LP++D W ++ GY +G+ ++ + F M ++ V
Sbjct: 178 VNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSR 237
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ GVL+ ++ G + G+
Sbjct: 238 FTVTGVLSVFAVMGDLNNGR 257
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I+ A +IF+ + KD SW +++ + G+ D + L + M G++
Sbjct: 279 IDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDL 338
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ VL ACS + G++
Sbjct: 339 VTVTTVLPACSHLAALMHGRE 359
>gi|302820681|ref|XP_002992007.1| hypothetical protein SELMODRAFT_134551 [Selaginella moellendorffii]
gi|300140249|gb|EFJ06975.1| hypothetical protein SELMODRAFT_134551 [Selaginella moellendorffii]
Length = 947
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + AN++F +PV++S SW TLI+ Y G + +AI LF M +G+
Sbjct: 783 LNMYGKCGSLREANRVFAAMPVRNSVSWNTLIVAYAQNGHVKLAIGLFRDMDLEGIVPNQ 842
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
VS + + ACS G++E+G K+F M A + PT HY C V LL
Sbjct: 843 VSFLSIFFACSHAGMLEEGSKYFQYMVADHGLVPTPEHYGCFVDLL 888
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 1 MIEPRL-DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED 59
MI+ L Y R +D A +FD + KD SW +I + G D A+ F +M+ D
Sbjct: 164 MIQNALVSLYGRCCEVDQARSVFDEICNKDLVSWTAMISAFVQNGHPDRAMVCFWSMQAD 223
Query: 60 GVEYYPVSHIGVLTA 74
GV+ V+ I +L A
Sbjct: 224 GVKPCRVTFITILEA 238
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A KI DR+ + SW ++ Y G LD A+ F M +GV
Sbjct: 71 INMYGKCGALEEARKILDRMEDSNVFSWTIMLAAYAQNGHLDDALECFWKMELEGVRANR 130
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
V+ I L C +G+ F ++ P +
Sbjct: 131 VTIISALGCCK---SFSRGQWFHSRIKQEGFLPDD 162
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDR-LPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y + R++ A +F+R L ++D SW LI + G+ A+ + AM +GV
Sbjct: 580 IKMYGKCKRLEEAMSVFNRILGIRDLVSWNALISAFAQNGDGRRALETYWAMIREGVRPD 639
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
++ I VL AC+ G + +G++
Sbjct: 640 RITFISVLDACATLGSIAEGREI 662
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A +FD + K + SW +++ GYGM G A+++F+ MR+ G
Sbjct: 567 IDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDD 626
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL ACS G+V++G +FD M A + P HYAC + LL +
Sbjct: 627 ITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLAR 674
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+ + KD SW ++ GY G + A LF+ MR++ +
Sbjct: 314 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 373
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ V+ S G + F +M
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQM 399
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G I+ A +IFD +P K ASW +I GY + G A++LF M + E P
Sbjct: 316 LDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAK---EEKP 372
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + V++AC+ GGLVE+G+K+F M+ + HY CMV LL
Sbjct: 373 DEITMLAVISACNHGGLVEEGRKWFQMMRKFGLNAKIEHYGCMVDLL 419
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A +FD +P + SW LI GY GELD+A LF+ M P
Sbjct: 120 VDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQM--------P 171
Query: 66 VSHIGVLTACSLGGLVEKG-----KKFFDEMQARNV 96
V+ + G V+ G ++ FDEM + V
Sbjct: 172 QVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTV 207
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + ++G + A ++FD + K +W T+I GY ++D A LF+AM E +
Sbjct: 183 MDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNL---- 238
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
VS ++ ++ + F EMQA
Sbjct: 239 VSWNTMIGGYCQNKQPQEAIRLFQEMQA 266
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G ++ A +FDR +D W +I+GYG+ G AI+L+ AM GV
Sbjct: 365 IDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPND 424
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ +G+L AC+ G+V +G FF+ M + P + HYAC++ LL
Sbjct: 425 VTFLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLL 469
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 2 IEPRL-----DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
IEP L Y + G++ A +FD++ + W +I GY G AI++F M
Sbjct: 255 IEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM 314
Query: 57 REDGVEYYPVSHIGVLTACSLGGLVEKGKKFFD 89
V +S ++AC+ G +E+ + ++
Sbjct: 315 INKDVRPDTISITSAISACAQVGSLEQARSMYE 347
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + G +D A ++F ++ K+ ASW LI G G+ D AI FE MR EDG++
Sbjct: 373 VDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPD 432
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVL+AC GLV+ GK++F+ + + + P HY+CMV LL +
Sbjct: 433 DITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDLLAR 481
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I A ++FD + KD +W +I GY G + AI+LF M++ GV ++
Sbjct: 274 MYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKIT 333
Query: 68 HIGVLTACSLGGLVEKGKKF 87
GVL+ACS G +E G +
Sbjct: 334 LAGVLSACSAVGALELGSEL 353
>gi|15231917|ref|NP_188091.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274207|sp|Q9LUC2.1|PP231_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14730
gi|9294394|dbj|BAB02404.1| unnamed protein product [Arabidopsis thaliana]
gi|332642039|gb|AEE75560.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 653
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD + VKDSASW +I GYG+ ++A+++F M GV+
Sbjct: 409 MDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDE 468
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ +G+L ACS G + +G+ F +M+ N+ PT HYAC++ +L
Sbjct: 469 ITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACVIDML 514
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKD-SASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y++ ++ A K+FD LP +D S W L+ GY + + A+ +F MRE+GV +
Sbjct: 205 YSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHT 264
Query: 68 HIGVLTACSLGGLVEKGKK 86
VL+A ++ G ++ G+
Sbjct: 265 ITSVLSAFTVSGDIDNGRS 283
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++ ++ AN IF+ + +D +W +++ + G+ D + LFE M G+
Sbjct: 304 IDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDI 363
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ VL C + +G++ M
Sbjct: 364 VTLTTVLPTCGRLASLRQGREIHGYM 389
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-Y 64
+D Y + G ++ A +IF+++ ++ SW T+ILG M G D A+ LF M E+ +
Sbjct: 294 IDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPN 353
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL ACS GG+VE+G+++FD M+ N++PT HY MV +L
Sbjct: 354 EVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDIL 400
>gi|218199241|gb|EEC81668.1| hypothetical protein OsI_25221 [Oryza sativa Indica Group]
Length = 931
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
+D Y + G ++LA ++FDR+P +D ASW +IL G + ++ LF+ M + + +
Sbjct: 216 VDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPN 275
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM--QARNVKPTETHYACMVYLLIK 112
++ + VL+AC+ GGLVE+G+++F M Q R +KP HY CMV LL +
Sbjct: 276 AITFVAVLSACNHGGLVEEGRRYFAMMVDQYR-IKPRIEHYGCMVDLLAR 324
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A +FD + K + SW +++ GYGM G A+++F+ MR+ G
Sbjct: 560 IDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDD 619
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL ACS G+V++G +FD M A + P HYAC + LL +
Sbjct: 620 ITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLAR 667
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+ + KD SW ++ GY G + A LF+ MR++ +
Sbjct: 307 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 366
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ V+ S G + F +M
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQM 392
>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
Length = 886
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A + F +P ++ SW +I G G G AI+LFE M+ +GVE
Sbjct: 546 VDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADE 605
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+++ +L+ACS GLV++ +++F + Q R ++P HYACMV LL + +
Sbjct: 606 VAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGE 656
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ +A ++FD +P ++ SW L++G+ GE + LF MR G
Sbjct: 242 IDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNE 301
Query: 66 VSHIGVLTACSLG 78
+ L AC G
Sbjct: 302 FTLSATLKACGGG 314
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + R+ +A ++FD L +++ W T+I+G+ G++ A+ LF GV
Sbjct: 445 LDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADG 504
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + LVE+GK+
Sbjct: 505 HVLSSVVAVFADFALVEQGKQ 525
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVSHIGVLTACS 76
A ++FD +P ++ A+W ++I GY G+ ++ +F M R + + +L ACS
Sbjct: 353 ARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACS 412
Query: 77 LGGLVEKGKKFFDEMQARNVKPTET 101
G +G + M R V P
Sbjct: 413 GLGAAREGAQVHAAMAVRGVSPASN 437
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D + + G ++ A+ IFD V KDS SW +I G+ M G + A+NLF M++ G
Sbjct: 440 MDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPD 499
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I VL+AC+ GLVE+G++FF M+ +KP HY CMV LL
Sbjct: 500 AVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLL 546
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G +D A +FD +P KD+ SW T++ GY GE + A LF+ M V VS
Sbjct: 282 RKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNV----VSWST 337
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNV 96
V++A G +E + FD+M A+N+
Sbjct: 338 VVSAYCKKGDMEMARVIFDKMPAKNL 363
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +++A IFD++P K+ +W ++ G + A LF M+E +E V+
Sbjct: 342 YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAV 401
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ +L AC+ G + GK+ ++ R +
Sbjct: 402 VSILAACAESGCLALGKRIHRHVRQRKL 429
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A ++F R+P ++ SW T++ Y G++++A +F+ M + +
Sbjct: 308 LDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWT 367
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
+ +++AC+ GLV + + F EM+
Sbjct: 368 I----MVSACAQKGLVGEAGRLFTEMK 390
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ + A K+FD + +D SW T + GE+D A ++F+ M E
Sbjct: 246 IDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDT---- 301
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS +L + G E+ + F M RNV
Sbjct: 302 VSWNTMLDGYAKAGEAEEAFELFQRMPGRNV 332
>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Brachypodium distachyon]
Length = 564
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M +D Y++ G I A K+F+ + KD SW ++I GYGM G + +I LF +M G
Sbjct: 310 MCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAG 369
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V V +G++ AC+ GGLV++G FF M + N++P + Y C+ LL +
Sbjct: 370 VHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLAR 422
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 15 IDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73
++ + K+FD L + +ASW +++ GY G+ + LF+ M +DG+E P + L
Sbjct: 125 VEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALH 184
Query: 74 ACS 76
AC+
Sbjct: 185 ACA 187
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + A +FD +P +D +W ++ GY G A++LF M GV + VL
Sbjct: 17 GALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVL 76
Query: 73 TACSLGGLVEKG 84
TAC GG + G
Sbjct: 77 TACR-GGAADGG 87
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R G++D A +F +P K+ SW +I M G A+ F +M D
Sbjct: 385 LDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDE 444
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQKAR 118
++ + +L+AC+ GGL+E G+ +F M+ NVKP HYACMV LL + Q A+
Sbjct: 445 ITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAK 498
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + + + FD + ++ SW ++I GY G A +LFE MR G+
Sbjct: 152 LHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADE 211
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +L ACS G +E GK + R +
Sbjct: 212 FTLVSLLFACSAEGNLEFGKLVHSHLLVRGCR 243
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A+ FD +P K++ SW +++ +D A + FE + E +
Sbjct: 253 VDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSI---- 308
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
+S +++ GG + ++ M+ + P E
Sbjct: 309 ISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDE 343
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ ID A F+++P K SW +I Y G A++L+ M+ G+ +
Sbjct: 288 AKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLA 347
Query: 70 GVLTACSLGGLVEKGKKFFD 89
VL+AC G + GK D
Sbjct: 348 AVLSACGQLGDLASGKMIHD 367
>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 703
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++GR+ +A +FD + D S+ ++I GYGM G+ VA+ LFE M + G++
Sbjct: 452 IDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDH 511
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYL 109
+ + VL+ACS GLV +G++ F++M + +KP HY+CM+ L
Sbjct: 512 IIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDL 556
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A K+FD + +D SW ++I Y +G+ A+ LF MR++G E
Sbjct: 215 MSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEVNS 274
Query: 66 VS 67
V+
Sbjct: 275 VT 276
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED--GVEY 63
+D Y + G I+ A ++F +P ++ +W +I GY LG++D+A++LF+ M G+
Sbjct: 354 VDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIAL 413
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL+ACS G VE+G + F+ M+ R ++P HYAC+V LL
Sbjct: 414 SYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLL 461
>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
Length = 659
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++GR+ +A +FD + D S+ ++I GYGM G+ VA+ LFE M + G++
Sbjct: 408 IDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDH 467
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYL 109
+ + VL+ACS GLV +G++ F++M + +KP HY+CM+ L
Sbjct: 468 IIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDL 512
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ Y + G + A K+FD + +D SW ++I Y +G+ A+ LF MR++G E
Sbjct: 192 MSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTE 248
>gi|125605681|gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japonica Group]
Length = 701
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R+G +D + K+FD + V D +W T+I GY G A+ +F+ M + GV V
Sbjct: 506 YSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVL 565
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
+ VL+ACS GLVE+G +F+ M+ A V+P HY CMV LL
Sbjct: 566 VSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLL 608
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R + + K+F+ + +D SW ++ G+ G A F M DG + VS
Sbjct: 305 YSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSL 364
Query: 69 IGVLTACSLGGLVEKGKK 86
+L+AC+ + KGK+
Sbjct: 365 TAILSACNRPECLLKGKE 382
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A + F R+PV++ SW T I G+ E A+ L M +GV
Sbjct: 103 VNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINK 162
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
+ +L AC+ +V + + V TE + C+V
Sbjct: 163 YTATSILLACAQMSMVREASQIHGM-----VLKTEMYLDCVV 199
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y++ + A +IFD P KD W ++I GY G + AI+LF+ M
Sbjct: 402 ISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLM 452
>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYY 64
+D Y ++G + +A +F++L ++ SW +I GYGM G D A+ LF M+ D V
Sbjct: 306 VDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPD 365
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+AC+ GG+VE+ K+FF M A ++KPT HY C++ +L
Sbjct: 366 NITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVL 412
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G++ A ++FD +P ++ W LI Y G + A+ L+ M E GVE
Sbjct: 104 VDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDN 163
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
++ VL AC+ +E G++ +
Sbjct: 164 FTYPLVLKACAALLDLETGREVHQRVSG 191
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y + G +D A +FD + V+D+ W ++I YG G A+ L M +G+
Sbjct: 205 VDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGI 260
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I LA +FDR+ KD W +I+GYG+ G AI L+ M++ GV
Sbjct: 344 IDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPND 403
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+ IG+LTAC GLV++G + F M ++P HY+C+V LL
Sbjct: 404 GTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLL 448
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G+I A +FD+L + SW ++I GY G+ A+N+F+ MR+ V+
Sbjct: 142 VSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDW 201
Query: 66 VSHIGVLTA 74
++ + V+TA
Sbjct: 202 IALVSVMTA 210
>gi|222640787|gb|EEE68919.1| hypothetical protein OsJ_27783 [Oryza sativa Japonica Group]
Length = 604
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A +FD + +D +W +I+G+G+ G+ I+LF +M EDGV
Sbjct: 355 MDMYFKCGYPSEAVAVFDAMQERDVKAWTVMIMGFGVNGQAGEVISLFRSMEEDGVVPNE 414
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS GGLV +GKKF + M + + P HY C++ LL
Sbjct: 415 VTFLAVLNACSHGGLVSEGKKFMESMVLQYGIFPNTEHYGCIIDLL 460
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R ++ K+FD +D + ++ GY G+++ A+ L + MR +GV +
Sbjct: 256 MYVREKSVECGRKVFDEATKRDLVLYNCMVDGYAEAGQVEEAMGLVDRMRLEGVRPSSGT 315
Query: 68 HIGVLTACSLGGLVEKGKKFFD 89
+GVL+AC G + G++ +
Sbjct: 316 LVGVLSACGASGAMAAGRRLHE 337
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
A ++FD +P +D+ SW T+I GY GE+ A+++F M
Sbjct: 171 ARRVFDEMPERDAVSWNTVIGGYVRAGEVTKAVDMFSEM 209
>gi|297823557|ref|XP_002879661.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325500|gb|EFH55920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 500
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+ Y + G + A +IFD+ KD SW ++I GY G AI LFE M + G++
Sbjct: 263 ISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQYGLATQAIELFELMMPKSGIKPD 322
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113
++++G+L++C GLV +G+KFF+ M R +KP HY+C+V LL ++
Sbjct: 323 AITYLGLLSSCRHAGLVIEGRKFFNLMAERGLKPELNHYSCLVDLLGRF 371
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y +G ++ A+K+F +P + SW +I G+ +D+ + L+ MR + +
Sbjct: 164 LYRDSGEVENAHKVFAEMPDNNVVSWTAMISGFAQEWRVDICMKLYSEMRNSTSDPNDYT 223
Query: 68 HIGVLTACSLGGLVEKGKK 86
+L+AC+ G + +G+
Sbjct: 224 FTALLSACTGSGALGQGRS 242
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I LA +FDR+ KD W +I+GYG+ G AI L+ M++ GV
Sbjct: 329 IDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPND 388
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+ IG+LTAC GLV++G + F M ++P HY+C+V LL
Sbjct: 389 GTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLL 433
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G+I A +FD+L + SW ++I GY G+ A+N+F+ MR+ V+
Sbjct: 127 VSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDW 186
Query: 66 VSHIGVLTA 74
++ + V+TA
Sbjct: 187 IALVSVMTA 195
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A +FDRL K+ SW +I GYGM G AI LFE MR G+E
Sbjct: 761 VDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDA 820
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
S +L AC GL +G++FF MQ ++P HY C+V LL +
Sbjct: 821 ASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSR 868
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R GR++ A ++FD + +D+ SW ++I G G A++LF M G E V+
Sbjct: 249 YSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTV 308
Query: 69 IGVLTACS-LG-GLVEK 83
+ VL AC+ LG GL+ K
Sbjct: 309 LSVLPACAGLGYGLIGK 325
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY ++ I A +F+R+P +D+ SW ++I G G AI LF M G E
Sbjct: 459 ISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDS 518
Query: 66 VSHIGVLTACS 76
V+ + VL AC+
Sbjct: 519 VTLLSVLPACA 529
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 9 YTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
Y + G + A +FD +P D W +L+ Y G+ A++LF M+ GV P
Sbjct: 146 YLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS--PD 203
Query: 67 SH-IGVLTAC--SLGGLVE 82
+H + + C SLG L E
Sbjct: 204 AHAVSCVLKCVSSLGSLTE 222
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSAS-WITLILGYGMLGELDVAINLFEAMREDGV---EY 63
Y + G + A ++FD + K + W ++ GY +GE + +++LF M E G+ E+
Sbjct: 359 MYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEH 418
Query: 64 YPVSHIGVLT--ACSLGGLVEKG 84
+ +T +C+ GLV G
Sbjct: 419 AISCLLKCITCLSCARDGLVAHG 441
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + ++ A IFDR+ KD SW TLI GY + + +LF M +++ P
Sbjct: 661 MEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDML---LQFRP 717
Query: 66 --VSHIGVLTACSLGGLVEKGKKF 87
V+ +L A + +E+G++
Sbjct: 718 NAVTMTCILPAAASISSLERGREI 741
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY ++G + A ++FD +P K+ SW TLI G + G ++ + L E M +GV
Sbjct: 282 VDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPND 341
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ +GVL+ C+ GL E+G++ M + ++P HY CMV LL
Sbjct: 342 ATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLL 387
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+ G ++ A K+FD + +D W +I G+ G++D+ + LF MR+ V +
Sbjct: 149 IELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWN 208
Query: 66 V 66
+
Sbjct: 209 I 209
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G+++LA ++F + + SW ++I+G+ G A+ FEAMR +G +
Sbjct: 244 IDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDA 303
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ GVLTACS GGL ++G +++D M+A + HY C+V LL
Sbjct: 304 VTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLL 349
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G + A ++FD +P D SW LI G G D AIN F AM DGVE V+ I
Sbjct: 148 RNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIA 207
Query: 71 VLTACS 76
V++AC+
Sbjct: 208 VISACA 213
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G I A K F+ +PV+++ +W LI G G A+ LF +M E +E
Sbjct: 415 VDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTD 474
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL ACS G LVE+G++ F M Q + P HY CMV LL
Sbjct: 475 VTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLL 520
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A ++FDR+ +D +W +I GY A+ +F M+ V
Sbjct: 314 VDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPND 373
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL+AC++ G +E GK
Sbjct: 374 VTMVSVLSACAVLGALETGK 393
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 35/126 (27%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G + A+ +F + VK +W +I GY G+ + +F+ M E +
Sbjct: 213 IHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDE 272
Query: 66 VSHIGVLTAC------SLG-----------------------------GLVEKGKKFFDE 90
V+ + V TAC +LG G ++K ++ FD
Sbjct: 273 VTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDR 332
Query: 91 MQARNV 96
M +R+V
Sbjct: 333 MHSRDV 338
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A IF+ +P+++ +W +ILGY G++ A+ L+E M+++ +
Sbjct: 364 VDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDN 423
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +GVL+AC +V++G+K+FD + + PT HYACM+ LL
Sbjct: 424 ITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLL 468
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ++ + +FD++P +DS S+ TLI + G A+ + M+EDG +
Sbjct: 96 LSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQ 155
Query: 66 VSHIGVLTACS 76
SH+ L ACS
Sbjct: 156 YSHVNALQACS 166
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G ID A +FD + K+ SW +I GY +G + I+LF M+ G++ V
Sbjct: 198 DMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLV 257
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
+ VL A G V+ + F +K + C +++ Y Q R
Sbjct: 258 TVSNVLNAYFRCGRVDDARNLF-------IKLPKKDEICWTTMIVGYAQNGR 302
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y R GR+D A +F +LP KD W T+I+GY G + A LF M V+
Sbjct: 263 LNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDS 322
Query: 66 VSHIGVLTACS 76
+ ++++C+
Sbjct: 323 YTISSMVSSCA 333
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
L Y + G++ A +FD + +D SW TL+ Y +G ++ +F+ M D V Y
Sbjct: 65 LHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSY- 123
Query: 65 PVSHIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPTE 100
L AC + G K K MQ +PT+
Sbjct: 124 -----NTLIACFASNGHSGKALKVLVRMQEDGFQPTQ 155
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ A+++FD + D SW L+ GY G I+LFE M V+ V+
Sbjct: 417 LYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVT 476
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
IGVL+ACS G VEKG +F MQ + P + HY CM+ L Y++ R
Sbjct: 477 FIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDL---YSRSGR 525
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ I A F R+ K+ SW LI+GYG G + A+ +F M+ DG++
Sbjct: 314 VDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 374 FTLGSVISSCANLASLEEGAQF 395
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R ++ A ++F+ + +D +W T++ G+ G A+N F MR G+ +
Sbjct: 218 RCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGS 277
Query: 71 VLTACSLGGLVEKGKKF--------FDE------------MQARNVKPTETHY 103
+LTAC +E+GK+ +D+ + R++KP ET +
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAF 330
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A +F+++P + + W +I G G+ G A+ LF M+++G++
Sbjct: 415 IDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDH 474
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ + +L ACS GLV++G+ FFD MQ ++ P HYACM +L + Q
Sbjct: 475 VTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQ 525
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + I+ A ++FD +PV+DS SW TLI GY G + A+ + M + +G++
Sbjct: 313 VDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAI 372
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + VL A S G +++G + M A ++K
Sbjct: 373 QGTFVSVLPAYSHLGALQQGMR----MHALSIK 401
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F + +D +W ++I G G+ A+ +F+ MR GV
Sbjct: 211 IDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDV 270
Query: 66 VSHIGVLTACSLGG 79
++ + + +A + GG
Sbjct: 271 LTLVSLASAIAQGG 284
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GRI A K+FD + +D +W ++ G A+ LF M +GV V+
Sbjct: 113 YLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTV 172
Query: 69 IGVLTACSLGG 79
VL C L G
Sbjct: 173 SSVLPMCVLLG 183
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-Y 64
+D Y + G ++ A +IF+++ ++ SW T+ILG M G D A+ LF M E+ +
Sbjct: 194 IDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPN 253
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL ACS GG+VE+G+++FD M+ N++PT HY MV +L
Sbjct: 254 EVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDIL 300
>gi|218201375|gb|EEC83802.1| hypothetical protein OsI_29727 [Oryza sativa Indica Group]
Length = 605
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A +FD + +D +W +I+G+G+ G+ I+LF +M EDGV
Sbjct: 355 MDMYFKCGYPSEAVAVFDAMQERDVKAWTVMIMGFGVNGQAGEVISLFRSMEEDGVVPNE 414
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS GGLV +GKKF + M + + P HY C++ LL
Sbjct: 415 VTFLAVLNACSHGGLVSEGKKFMESMVLQYGIFPNTEHYGCIIDLL 460
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R ++ K+FD +D + ++ GY G+++ A+ L + MR +GV +
Sbjct: 256 MYVREKSVECGRKVFDEATKRDLVLYNCMVDGYAEAGQVEEAMGLVDRMRLEGVRPSSGT 315
Query: 68 HIGVLTACSLGGLVEKGKKFFD 89
+GVL+AC G + G++ +
Sbjct: 316 LVGVLSACGASGAMAAGRRLHE 337
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
A ++FD +P +D+ SW T+I GY GE+ A+++F M
Sbjct: 171 ARRVFDEMPERDAVSWNTVIGGYVRAGEVTKAVDMFSEM 209
>gi|125544034|gb|EAY90173.1| hypothetical protein OsI_11738 [Oryza sativa Indica Group]
Length = 408
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-------RE 58
LD Y++ GR+D +IFDR+ ++ +W ++I GYG G D A+ LFE M +
Sbjct: 115 LDMYSKCGRVDDGRRIFDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRRRRRHD 174
Query: 59 DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIKYNQKA 117
D + + + L+AC+ GL+ +G++ F M+ + ++P HYACMV LL ++
Sbjct: 175 DAIRPNHATFLSALSACARAGLLSRGQEVFQSMEREHALRPRMEHYACMVDLLGRFGSVR 234
Query: 118 R 118
R
Sbjct: 235 R 235
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ID A ++F+ + +D S+ +I G + GE + A +F M G+E
Sbjct: 356 LDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNE 415
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +G+L ACS GGLV +GKK+F +M + ++P HY CM+ LL
Sbjct: 416 VTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLL 461
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + ++ A K+FD +PVK+ +W +I G G A++ F M++ GV+
Sbjct: 255 LDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDE 314
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ +GVL +C+ G++E GK
Sbjct: 315 VTLVGVLNSCANLGVLEIGK 334
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+ G I K+FD P +D SW TLI + G A+ F M + +
Sbjct: 153 MRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADG 212
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ + VL+ACS G + G+K
Sbjct: 213 RTLVVVLSACSNLGDLNLGQK 233
>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 554
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+R G ID + K+FD +P ++ +W LI G + G A+ +F M+E G++
Sbjct: 224 INMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDG 283
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
IGVL ACS GGLVE G + F+ M+ +KP HY CMV LL
Sbjct: 284 ALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLL 329
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+F + KD +W +I+G + G + A+ +F M E +
Sbjct: 382 IDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDE 441
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
+++IGVL AC+ G+VEKG+ FF M ++ +KP THY CMV LL
Sbjct: 442 ITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLL 487
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ G+IDLA K FD++P +D SW +I GY + A+ LF M+ V+ +
Sbjct: 284 FANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTM 343
Query: 69 IGVLTACSLGGLVEKG---KKFFDEMQARN 95
+ +LTAC+ G +E G K + D+ +N
Sbjct: 344 VSILTACAHLGALELGEWVKTYIDKNSIKN 373
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + G +D A +FD + +D SW +++ G+ +G++D+A F+ + E +
Sbjct: 250 IDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWT 309
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
G L + +E F EMQ NVKP E
Sbjct: 310 AMIDGYL---RMNRFIE-ALALFREMQMSNVKPDE 340
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTA 74
+DLA K+FD + +W ++ GY + + + LF M + GV V+ + +L+A
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217
Query: 75 CSLGGLVEKGKKFF 88
CS +E GK +
Sbjct: 218 CSKLKDLEGGKHIY 231
>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
Length = 701
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR+ A +IFD + KD SW L+ GY G+ AI++F M +GV V+
Sbjct: 502 YAKCGRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTF 561
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+G+L+ACS GL+++G FF+ M + ++KP HYACM LL
Sbjct: 562 VGILSACSRAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLL 604
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R R++ A K+FD +P K+S SW T+I G G+L A +L + M + V
Sbjct: 274 LDGYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKT 333
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
G L +V ++ FD M+
Sbjct: 334 ALMHGYLQR----NMVNDARQIFDGME 356
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ + R G +D A F R+ + SW+TL+ GY G + A +LF+ M E V
Sbjct: 212 LEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARDLFDRMPERNVVACN 271
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
V G + L E+ K FDEM +N
Sbjct: 272 VMLDGYVRLSRL----EEACKLFDEMPGKN 297
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPV 66
Y + G ++ A +F R+P KD+ SW T+I GY G++ AI +F M R++ V + V
Sbjct: 370 YVQRGMLEEAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIGIFRRMSRKNTVSWNSV 428
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
T++G++ A + FD + KD SW ++ G+ G+LD A + F + V VS +
Sbjct: 185 TQSGQMVRAVQFFDEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNV----VSWV 240
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
+L G + + FD M RNV AC V L
Sbjct: 241 TLLNGYCRAGRISDARDLFDRMPERNV------VACNVML 274
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 9 YTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R G ++LA + DR+P K +A + +I GY G D A+ L M P
Sbjct: 121 YARAGELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVKLLREM--------PAP 172
Query: 68 HIGVLTACSLGGLVEKGK-----KFFDEM 91
+ + +L GL + G+ +FFDEM
Sbjct: 173 DLFSWNS-ALAGLTQSGQMVRAVQFFDEM 200
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED 59
GR+ A +FDR+P +D SW ++ Y GEL++A ++ + M D
Sbjct: 94 GRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRMPGD 140
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R+G++ A ++FD +P +++ ++ +++ G +D A LF+ M VS
Sbjct: 29 ARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPSRNA----VSWN 84
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARN 95
++ A S G V + FD M +R+
Sbjct: 85 AMIAALSDHGRVADARGLFDRMPSRD 110
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
Y + ++ A +IFD + V D+ W T+I GY G L+ A+ LF+ M +D V +
Sbjct: 339 YLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLEEAMLLFQRMPNKDTVSWNT-- 396
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ + GG + K F M +N
Sbjct: 397 ---MIAGYAQGGQMRKAIGIFRRMSRKNT 422
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
L R GRID A +FD +P +++ SW +I G + A LF+ M D +
Sbjct: 56 LSALARHGRIDEARALFDGMPSRNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWT 115
Query: 65 PVSHIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
V+ +C + G +E + D M P + AC ++ Y + R
Sbjct: 116 ------VMVSCYARAGELELARDVLDRM------PGDKCTACYNAMISGYAKNGR 158
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR D A K+ +P D SW + + G G++ A+ F+ M E + + +
Sbjct: 153 YAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFFDEMVEKDMVSWNLML 212
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
G + A G ++ FF +++ NV
Sbjct: 213 EGFVRA----GDLDAAASFFGRIESPNV 236
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDLA ++F+++ K+ +SW +I G M G + AI+LF M + YP
Sbjct: 345 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM-----DIYP 399
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL AC+ GGLV+KG F+ M+ V+P HY C+V LL
Sbjct: 400 NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLL 447
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFD-RLPVKDSASWITLILGYGMLGELDVAINLFEAMRED 59
++ + Y GR+ A +I D + D+ W +I GY GE++ A LFE M +
Sbjct: 175 ILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDR 234
Query: 60 GVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ + I + C G+VE ++FFDEM+ R+
Sbjct: 235 SMISTWNAMISGFSRC---GMVEVAREFFDEMKERD 267
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
++R G +++A + FD + +D SW +I GY G A+ +F M+++ +
Sbjct: 247 FSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVL 306
Query: 69 IGVLTACSLGGLVEKGK 85
VL+AC+ G +++G+
Sbjct: 307 PSVLSACANLGALDQGR 323
>gi|413921338|gb|AFW61270.1| hypothetical protein ZEAMMB73_216321 [Zea mays]
Length = 687
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A +F+R+P ++ SW LI GYG G D AI +FE + +G
Sbjct: 357 VDLYCKWGRMEDARNVFERMPRRNLISWNALIAGYGYHGMGDKAIEMFERLIAEGAVPNH 416
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL AC GLV++GK+ F M +KP HYAC++ L
Sbjct: 417 VTFLAVLNACRFSGLVDEGKRIFQLMTENLRIKPRAMHYACVIELF 462
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSAS---WITLILGYGMLGELDVAINLFEAMREDGVE 62
LD Y++ GRID A ++FD LP + W +++ Y + G + A+ L++ M V
Sbjct: 253 LDMYSKCGRIDEARRVFDGLPRPHRTTVVAWNSMLAAYVLHGHSEEALELYQKMCSTHVA 312
Query: 63 YYPVSHIGVLTACSLGGLVEKGKK 86
+ +L S GL+E K+
Sbjct: 313 MDQFTFSTMLGVFSRLGLLEHAKQ 336
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++G +D A +FD +P +++ SW +L+ GYGM G + A+ +F+ MR+ +
Sbjct: 656 IDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDG 715
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYL 109
++ + VL ACS G+V+ G FF+ M V P HYACMV L
Sbjct: 716 ITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDL 760
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+++ ANK+F R+ KD SW ++ GY G L+ A++LFE M E+ +E
Sbjct: 406 VDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDV 465
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
V+ V+T + G + F +M +P
Sbjct: 466 VTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPN 499
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVK----DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
Y++ GR++ A +F+R+ + D +W +I GY G+ A+++F M + G
Sbjct: 440 YSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPN 499
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
V+ + +L+AC G + GK+
Sbjct: 500 VVTLVSLLSACVSVGALLHGKE 521
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDS--ASWITLILGYGMLGELDVAINLFEAM 56
+I +D Y + ++A K+FD + KD +W +I GY G+ + A+ LF M
Sbjct: 545 VINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGM 602
>gi|125563707|gb|EAZ09087.1| hypothetical protein OsI_31353 [Oryza sativa Indica Group]
Length = 810
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R+G +D + K+FD + V D +W T+I GY G A+ +F+ M + GV V
Sbjct: 615 YSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVL 674
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
+ VL+ACS GLVE+G +F+ M+ A V+P HY CMV LL
Sbjct: 675 VSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLL 717
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R + + K+F+ + +D SW ++ G+ G A F M DG + VS
Sbjct: 414 YSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSL 473
Query: 69 IGVLTACSLGGLVEKGKK 86
+L+AC+ + KGK+
Sbjct: 474 TAILSACNRSECLLKGKE 491
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y++ + A +IFD P KD W ++I GY G + AI+LF+ M
Sbjct: 511 ISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAISLFQLM 561
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A + F R+PV++ SW T I G+ E A+ L M +GV
Sbjct: 212 VNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINK 271
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
+ +L AC+ +V + + V TE + C+V
Sbjct: 272 YTATSILLACAQMSMVREASQIHGM-----VLKTEMYLDCVV 308
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG I K+F+R+ +D+ SW +I+GY G A+ LFE M
Sbjct: 429 VDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDS 488
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+AC GLV++G+++F M + + PT HY CM+ LL
Sbjct: 489 VTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLL 534
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R + A K+FD +P ++ SW +LI Y G +D A+ LF M +DG
Sbjct: 189 VDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDE 248
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ V++AC+ +G++ M
Sbjct: 249 VTLASVMSACAGLAAGREGRQVHTRM 274
>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
Length = 772
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+D A + F+ +PV++S SW ++I GY G+ + A+ LF M+ DG + P
Sbjct: 381 VDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDG-QTPP 439
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GL+E+G K F+ M + + P H++CM LL
Sbjct: 440 DHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLL 487
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I A ++F + KDS SW ++I G G A+ +++MR +
Sbjct: 76 VNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEILPGS 135
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
+ I L++C+ + G++ E
Sbjct: 136 FTLISSLSSCASLKWAKLGQQIHGE 160
>gi|46403989|gb|AAS93059.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 810
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R+G +D + K+FD + V D +W T+I GY G A+ +F+ M + GV V
Sbjct: 615 YSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVL 674
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
+ VL+ACS GLVE+G +F+ M+ A V+P HY CMV LL
Sbjct: 675 VSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLL 717
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R + + K+F+ + +D SW ++ G+ G A F M DG + VS
Sbjct: 414 YSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSL 473
Query: 69 IGVLTACSLGGLVEKGKK 86
+L+AC+ + KGK+
Sbjct: 474 TAILSACNRSECLLKGKE 491
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y++ + A +IFD P KD W ++I GY G + AI+LF+ M
Sbjct: 511 ISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAISLFQLM 561
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A + F R+PV++ SW T I G+ E A+ L M +GV
Sbjct: 212 VNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINK 271
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
+ +L AC+ +V + + V TE + C+V
Sbjct: 272 YTATSILLACAQMSMVREASQIHGM-----VLKTEMYLDCVV 308
>gi|115479139|ref|NP_001063163.1| Os09g0413300 [Oryza sativa Japonica Group]
gi|113631396|dbj|BAF25077.1| Os09g0413300 [Oryza sativa Japonica Group]
Length = 810
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R+G +D + K+FD + V D +W T+I GY G A+ +F+ M + GV V
Sbjct: 615 YSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVL 674
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
+ VL+ACS GLVE+G +F+ M+ A V+P HY CMV LL
Sbjct: 675 VSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLL 717
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R + + K+F+ + +D SW ++ G+ G A F M DG + VS
Sbjct: 414 YSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSL 473
Query: 69 IGVLTACSLGGLVEKGKK 86
+L+AC+ + KGK+
Sbjct: 474 TAILSACNRPECLLKGKE 491
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A + F R+PV++ SW T I G+ E A+ L M +GV
Sbjct: 212 VNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINK 271
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
+ +L AC+ +V + + V TE + C+V
Sbjct: 272 YTATSILLACAQMSMVREASQIHGM-----VLKTEMYLDCVV 308
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y++ + A +IFD P KD W ++I GY G + AI+LF+ M
Sbjct: 511 ISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLM 561
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I +A +FDR+ +D +W +I+G M G A++LFE M EDGV
Sbjct: 370 VDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCY 429
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VLTACS GLV++G ++F+ M+ + P HYA + LL
Sbjct: 430 VAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLL 475
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R++ + + F LP KD+ SW ++I G GE D + F M ++ V+
Sbjct: 269 IDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMA 328
Query: 66 VSHIGVLTACS 76
VS V+ AC+
Sbjct: 329 VSFSSVIPACA 339
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 6 LDFYTRTGR--IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
D + + G ID K+FD +PV+D SW T+I G+ G A+++ M ++G
Sbjct: 165 FDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNG 221
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G I+LA +F+ +P+K+ +W ++I + M G+ ++ LFE M+++G E
Sbjct: 425 IDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNE 484
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +L AC GLV +G+ F M Q ++P HY CMV LL
Sbjct: 485 VTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLL 530
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R ++++A IFD +P KD SW +I GY + + A++LF M+E G+ ++
Sbjct: 327 YARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITM 386
Query: 69 IGVLTACSLGGLVEKGK 85
+ V++AC+ G ++K K
Sbjct: 387 LSVISACANLGSLDKAK 403
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + G +D A ++F ++P K+ ASW LI G G D AI F+ MR E+G++
Sbjct: 397 VDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPD 456
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVL+AC GLV+ GK++F+ + + P HY+CMV LL +
Sbjct: 457 DITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLAR 505
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I A ++FD + KD +W +I GY G + AI+LF +MR G+
Sbjct: 296 LGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDK 355
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ GVL+ACS G +E G +
Sbjct: 356 ITLAGVLSACSAVGALELGSEL 377
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G + LA KIF +P +D SW T+I G + G+ A+ F M + GV
Sbjct: 278 MDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNE 337
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLV +G+ F +M Q +KP HY CMV LL
Sbjct: 338 VTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLL 383
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R+G I++A +F + +KD +SW +L+ G+ +++ A +F+ M
Sbjct: 145 IDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRN----S 200
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
VS ++T G + G + F EM+A
Sbjct: 201 VSWTAMITGYVQGEVPIPGLELFQEMRA 228
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + G +D A ++F ++P K+ ASW LI G G D AI F+ MR E+G++
Sbjct: 397 VDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPD 456
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVL+AC GLV+ GK++F+ + + P HY+CMV LL +
Sbjct: 457 DITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLAR 505
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I A ++FD + KD +W +I GY G + AI+LF +MR G+
Sbjct: 296 LGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDK 355
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ GVL+ACS G +E G +
Sbjct: 356 ITLAGVLSACSAVGALELGSEL 377
>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++G I+ A +F + ++S ++ T+ILGYG G + A++LF +M++ G++
Sbjct: 449 VDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDA 508
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL+ACS GLV++G + F+ M+ ++P+ HY C+ +L
Sbjct: 509 ITFVAVLSACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADML 554
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 6 LDFYTRTGRIDLANKIF--DRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y ++G I ++ ++F + + +D A+W +I GY G ++ A F M E +
Sbjct: 346 IDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRP 405
Query: 64 YPVSHIGVLTACSLGGLVEKGKKF 87
V+ +L ACS G + GK+
Sbjct: 406 NAVTLASILPACSSLGSINLGKQL 429
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y+R + + ++F+++P KD SW T+I G+ G + + L M++ G
Sbjct: 246 LVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADS 305
Query: 66 VSHIGVLTACS 76
V+ +L+A S
Sbjct: 306 VTVTSLLSAAS 316
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + G +D A ++F ++P K+ ASW LI G G D AI F+ MR E+G++
Sbjct: 397 VDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPD 456
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVL+AC GLV+ GK++F+ + + P HY+CMV LL +
Sbjct: 457 DITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMVDLLAR 505
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I A ++FD + KD +W +I GY G + AI+LF +MR G+
Sbjct: 296 LGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDK 355
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ GVL+ACS G +E G +
Sbjct: 356 ITLAGVLSACSAVGALELGSEL 377
>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID A +IF R+ V++ +W ++I G+ G LF+ M E+G+
Sbjct: 403 VDLYAKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDY 462
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+S +GVL ACS GLV++GKK+F M + +KP HY CM+ LL
Sbjct: 463 ISFVGVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLL 508
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + ++ + +FDR+ VK+ SW L+ GY G+ + I +F +G +
Sbjct: 306 VDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIF----REGKKVDT 361
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
S VL AC+ V +GK+
Sbjct: 362 YSFGTVLRACAGLAAVRQGKE 382
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y R +D A +F LP D+ W ++I + D A+ F +M R+ G+
Sbjct: 204 IDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPD 263
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ VLTAC G +++GK+
Sbjct: 264 GFTFGTVLTACGNLGRLKQGKE 285
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A ++FD L KD SW ++I GY + + ++ LF M G+E + V+ ACS
Sbjct: 115 ARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSG 174
Query: 78 GGLVEKGKKFFDEMQAR 94
G + GK F + R
Sbjct: 175 LGDLRLGKCFHGVVMVR 191
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G + A +FD +P + SW +I GYGM G ++A+ LF+ M G+E
Sbjct: 295 INMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG 354
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN--VKPTETHYACMVYLL 110
+ + VL+ACS GL ++G ++F +M RN ++P HY+CMV LL
Sbjct: 355 TAFVCVLSACSHAGLTDQGLEYF-KMMKRNYQLEPGPEHYSCMVDLL 400
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A K+FD +PVK SW ++ GY G + L+ M +GV P
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
V+ +GVL++C+ G G + ++QA
Sbjct: 254 VTLVGVLSSCANLGAQSVGHEVEFKIQA 281
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ AN++FD + K +S +I G+ M G D A +L M++DG+E
Sbjct: 355 IDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDD 414
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L+ACS GL + G+K F M ++P HY CM+ LL
Sbjct: 415 ITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLL 460
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G +D A K+FD +P+KD SW +I GY +G A+ LF M + V+ +
Sbjct: 154 YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTM 213
Query: 69 IGVLTACSLGGLVEKGKKF 87
VL+ C+ G VE G++
Sbjct: 214 ATVLSTCTHSGNVELGRQI 232
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A+ +F+ L KD SW TLI GY + A+ +F+ M + G
Sbjct: 247 LVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLG 306
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G ++ G+
Sbjct: 307 ETPNDVTMLSILPACAHLGAIDIGR 331
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A+K+FD +D S+ +I GY G +D A +F+ + V
Sbjct: 120 ISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDV---- 175
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS +++ + G ++ + F+EM +VKP E+ A ++
Sbjct: 176 VSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVL 217
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G + A +FD +P + SW +I GYGM G ++A+ LF+ M G+E
Sbjct: 286 INMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDG 345
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN--VKPTETHYACMVYLL 110
+ + VL+ACS GL ++G ++F +M RN ++P HY+CMV LL
Sbjct: 346 TAFVCVLSACSHAGLTDQGLEYF-KMMKRNYQLEPGPEHYSCMVDLL 391
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A K+FD +PVK SW ++ GY G + L+ M +GV P
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 244
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
V+ +GVL++C+ G G + +MQA
Sbjct: 245 VTLVGVLSSCANLGAQSVGHEVEFKMQA 272
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G++D A ++F R+ + SW ++I+G+ G+ A+ FEAMR +G +
Sbjct: 245 IDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDT 304
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ GVLTACS GL ++G +++D M+ + + HY C+V LL
Sbjct: 305 VTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLL 350
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G + A ++FD +P D SW LI G G D AI+ F +M DGVE V+ +
Sbjct: 149 RNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVTLVA 208
Query: 71 VLTACS 76
++AC+
Sbjct: 209 AISACA 214
>gi|302763033|ref|XP_002964938.1| hypothetical protein SELMODRAFT_83698 [Selaginella moellendorffii]
gi|300167171|gb|EFJ33776.1| hypothetical protein SELMODRAFT_83698 [Selaginella moellendorffii]
Length = 307
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G I+ A ++F R+ KD+ SW ++I Y LG+ AI LFE M +G E
Sbjct: 167 IGMYKRCGSIENARRVFVRIENKDTVSWNSIIAAYADLGDCKEAIELFELMSLEGFEPSR 226
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+++ VL ACS GLV++G + F M V PT H++CMV L
Sbjct: 227 ATYLSVLGACSHAGLVKEGVEVFASMVEFGVVPTREHFSCMVDLF 271
>gi|449503129|ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 769
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + AN +F + + SW T+I+G+ G+ A+ +F+ MR+ E
Sbjct: 560 LDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNH 619
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ I VL ACS GG +++ K+F M A + P+E HY CMV LL
Sbjct: 620 ITFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLL 665
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV---- 61
L+FY + GR+ ++FD +P ++ SW +I G+ G + A++LF M DG
Sbjct: 257 LNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPN 316
Query: 62 EYYPVSHIGVLTACSL 77
E+ VS L ACSL
Sbjct: 317 EFTLVS---ALHACSL 329
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + ++ K FD + D SW + G GE A+ + M+ GV
Sbjct: 460 DMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKF 519
Query: 67 SHIGVLTACSLGGLVEKGKKF 87
+ L +C+ +E+GKKF
Sbjct: 520 TLATALNSCANLASIEEGKKF 540
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD D SW +LI+GY G A+NLF MR GV+
Sbjct: 527 IDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNE 586
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+++GVL+ACS GLVE+G ++ M+ + PT H +CMV LL +
Sbjct: 587 VTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLAR 634
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A K FD + ++ SW +I GY G+ + AI ++ M G Y+P
Sbjct: 122 LNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSG--YFP 179
Query: 66 --VSHIGVLTACSLGGLVEKGKKF 87
++ ++ AC + G ++ G +
Sbjct: 180 DQLTFGSIIKACCIAGDIDLGGQL 203
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT+ G+I A+ +F + KD SW ++I G+ LG A+ LF M GV Y P
Sbjct: 223 ISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGV-YQP 281
Query: 66 VSHI--GVLTAC 75
I V +AC
Sbjct: 282 NEFIFGSVFSAC 293
>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130 [Vitis vinifera]
gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++F + V++ SW +I GYG G + AI+LF M+ DG+E
Sbjct: 351 IDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDE 410
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+++ +L+ACS GL+ + +++F + +KP HYACMV +L + Q
Sbjct: 411 VAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQ 461
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R+DLA +FDR+ ++ SW L+ GY G ++ L M GV+
Sbjct: 46 IDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNE 105
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ L AC G+VE G
Sbjct: 106 FTFSTSLKACGALGVVENG 124
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI +A ++F+++P ++ SW +I G+ G ++ LF+ M+ G
Sbjct: 147 IDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDE 206
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
+ L AC G + G + + R
Sbjct: 207 FTFTSTLKACGALGAIRGGTQIHASLITR 235
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 35/126 (27%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-----DG 60
+D Y + G + A K+FDR+ K+ SW LI G+ G L A++LF +RE DG
Sbjct: 250 VDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDG 309
Query: 61 ---------------VEYYPVSHIGVLTACS---------------LGGLVEKGKKFFDE 90
VE H +L S GL E+ ++ F E
Sbjct: 310 FVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSE 369
Query: 91 MQARNV 96
MQ RNV
Sbjct: 370 MQVRNV 375
>gi|449439723|ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 769
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + AN +F + + SW T+I+G+ G+ A+ +F+ MR+ E
Sbjct: 560 LDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNH 619
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ I VL ACS GG +++ K+F M A + P+E HY CMV LL
Sbjct: 620 ITFICVLNACSQGGFIDEAWKYFSSMSADHGIAPSEDHYVCMVNLL 665
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV---- 61
L+FY + GR+ ++FD +P ++ SW +I G+ G + A++LF M DG
Sbjct: 257 LNFYVKCGRLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPN 316
Query: 62 EYYPVSHIGVLTACSL 77
E+ VS L ACSL
Sbjct: 317 EFTLVS---ALHACSL 329
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + ++ K FD + D SW + G GE A+ + M+ GV
Sbjct: 460 DMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKF 519
Query: 67 SHIGVLTACSLGGLVEKGKKF 87
+ L +C+ +E+GKKF
Sbjct: 520 TLATALNSCANLASIEEGKKF 540
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A ++F+R P+KD W ++I GY G + A+N+F M GV
Sbjct: 380 ITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDD 439
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ IGVL+ACS G V++G + F+ M+ + V+P HYAC+V LL + +Q
Sbjct: 440 VTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQ 490
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G++D+A K+F+ +P ++ SW ++LGY G + A +LF+AM PV
Sbjct: 220 YARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAM--------PVKP 271
Query: 69 IGVLTACSLG----GLVEKGKKFFDEMQARN 95
+ V +G G V+K ++ F M+ R+
Sbjct: 272 VVVCNEMIMGFGLNGEVDKARRVFKGMKERD 302
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GR+D A +FD +P ++ +W ++ GY G++DVA LFE M E VS
Sbjct: 189 YCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERN----EVSW 244
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+L + G + + FD M + V
Sbjct: 245 TAMLLGYTHSGRMREASSLFDAMPVKPV 272
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
+ GR+D A K+FD +P KD + +I GY G LD A LF+ M + V V+
Sbjct: 160 QEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV----VTWTA 215
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
+++ + G V+ +K F+ M RN E + M L+ Y R
Sbjct: 216 MVSGYARNGKVDVARKLFEVMPERN----EVSWTAM---LLGYTHSGR 256
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 9 YTRTGRIDLANKIFDR--LPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
Y R G++D A K+FD LP + +SW ++ Y + A+ LFE M + V
Sbjct: 32 YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNT----V 87
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
S G+++ G++ + ++ FD M RNV
Sbjct: 88 SWNGLISGHIKNGMLSEARRVFDTMPDRNV 117
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G + A ++FD +P ++ SW +++ GY G++ A LF M V + V
Sbjct: 96 HIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVML 155
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
G+L G V+ +K FD M ++V
Sbjct: 156 GGLLQE----GRVDDARKLFDMMPEKDV 179
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 12 TGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV 71
G +D A ++F + +D+ +W +I Y G A+ LF M+ +G+ S I V
Sbjct: 285 NGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISV 344
Query: 72 LTACSLGGLVEKGKKFFDEM 91
L+ C ++ GK+ ++
Sbjct: 345 LSVCVSLASLDHGKQVHAQL 364
>gi|125599411|gb|EAZ38987.1| hypothetical protein OsJ_23405 [Oryza sativa Japonica Group]
Length = 531
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
+D Y + G ++LA ++FDR+P +D ASW +IL G + ++ LF+ M + + +
Sbjct: 197 VDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPN 256
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL+AC+ GGLVE+G+++F M + +KP HY CMV LL +
Sbjct: 257 AITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLAR 305
>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
Length = 644
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + GR+ A +FD + +D SW +++ GYGM G D A+ +F M E V+
Sbjct: 393 INMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDG 452
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS G V +G++ FD+M + P+ HY CMV LL
Sbjct: 453 VTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVDLL 498
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y + G++D A ++F +++ +W LI Y G D A+N+ M + G P +
Sbjct: 258 YGKLGKMDDAREVFREAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVM 317
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
S V+ + G E+ + F MQ + + P
Sbjct: 318 SWSAVIGGFASSGDNERALELFRRMQQQWLSP 349
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSA-SWITLILGYGMLGELDVAINLFEAMREDG 60
Y R GR D A+ +FD +P K + SW TLI Y + + + A+ F M G
Sbjct: 117 YARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDPNNAMATFARMAAAG 169
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G +D A +F+ + KD +W T+I+ + M GE A+ LFE M + GV
Sbjct: 248 IDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPD 307
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
VS++ VL AC+ GGLVE+G + F+ M+ VKP HY +V LL
Sbjct: 308 DVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLL 353
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ID A K+FD + +D ASW LI G+ + A++LF+ M DG +
Sbjct: 147 LDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNE 206
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+S +G L+AC+ G ++G+K
Sbjct: 207 ISVLGALSACAQLGDFKEGEK 227
>gi|115470991|ref|NP_001059094.1| Os07g0191500 [Oryza sativa Japonica Group]
gi|34394559|dbj|BAC83863.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50510108|dbj|BAD30876.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610630|dbj|BAF21008.1| Os07g0191500 [Oryza sativa Japonica Group]
Length = 550
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
+D Y + G ++LA ++FDR+P +D ASW +IL G + ++ LF+ M + + +
Sbjct: 216 VDLYGKCGALELAQQVFDRMPARDLASWNVMILTLANHGRVCESVELFDRMTQVEKMAPN 275
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL+AC+ GGLVE+G+++F M + +KP HY CMV LL +
Sbjct: 276 AITFVAVLSACNHGGLVEEGRRYFAMMVDQYRIKPRIEHYGCMVDLLAR 324
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ A+++FD +P D S+ L+ GY G+ I+LFE M GV+ V+
Sbjct: 426 LYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVT 485
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
IGVL+ACS GLVEKG +F MQ + + HY CM+ L Y++ R
Sbjct: 486 FIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDL---YSRSGR 534
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ I LA +F R+ K+ SW +I+GYG G + A+ +F M+ DG++
Sbjct: 323 VDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPND 382
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
+ V+++C+ +E+G +F ++P T + +V L
Sbjct: 383 FTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTL 426
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R ++ A +F+ + +DS +W T++ G G A+++F MR +GV +
Sbjct: 227 RCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGS 286
Query: 71 VLTACSLGGLVEKGKKF 87
+LTAC E+GK+
Sbjct: 287 ILTACGALAASEEGKQI 303
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G ++ A +IF+ +P +D SW +I G + G + A+++F M + +
Sbjct: 394 IDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDE 453
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ IGVL AC+ G+V+KGKKFF M ++ ++P HY CMV LL
Sbjct: 454 VTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLL 499
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G +D A IFD + +D SW ++ G+ LG++ +A N F+ M E +
Sbjct: 262 IDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWT 321
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
G L ++ F EMQA N+KP E
Sbjct: 322 AMIDGYLQVNRFKEVL----SLFREMQAANIKPDE 352
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+T G++ LA FD++P +D SW +I GY + ++LF M+ ++ +
Sbjct: 296 FTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTM 355
Query: 69 IGVLTACSLGGLVEKGK 85
+ +LTAC+ G +E G+
Sbjct: 356 VSILTACAHLGALELGE 372
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+ +G + +A +FDR D +W +I GY + D ++ LF+ M V
Sbjct: 161 IHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSS 220
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
++ + VL+ACS + GK+ ++ ++P
Sbjct: 221 ITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEP 253
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G + A K+FD++ VKD A+W +ILG + G +A+ LFE M + G +
Sbjct: 300 IDFYAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNE 359
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +GVLTAC+ L + + F M + N+ P+ HY C+V +L + Q
Sbjct: 360 VTFVGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQ 410
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-----VEY 63
Y G ++ +FD++P ++ AS ++ GY + LF +++ V++
Sbjct: 197 YCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKF 256
Query: 64 YPVSHIGVLTACSLGGLVEKGK 85
+ VL AC++ G E+GK
Sbjct: 257 NGALLVSVLNACTVMGAFEEGK 278
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I ANK F +P + +W ++I GY G+ AI LFE MR GV
Sbjct: 435 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 494
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS GLVE+ + +FD M+ ++P HY CM+ + ++
Sbjct: 495 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVR 542
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R A ++FD +P ++ +W L+ GY + + + + +F M E G YP
Sbjct: 120 VNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMG--RYP 177
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
+ L AC V+ GK+
Sbjct: 178 SHYTLGATLNACLASCDVDLGKQ 200
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ + IFDR+ KD A W +I GYG+ G AI LFE M+ G
Sbjct: 645 IDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDS 704
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
+ +GVL AC+ GLV +G K+ +MQ VKP HYAC+V +L + Q
Sbjct: 705 FTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQ 755
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y++ G + A +FD K+ SW T+I GY G+ L + M RE+ V
Sbjct: 341 VDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVN 400
Query: 65 PVSHIGVLTACS 76
V+ + VL ACS
Sbjct: 401 EVTVLNVLPACS 412
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
+ Y + + L IFD++ K W +I G+ EL A++ F M G++
Sbjct: 544 MSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQ-NELPCEALDTFRQMLSGGIKPQ 602
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
++ GVL ACS + GK+
Sbjct: 603 EIAVTGVLGACSQVSALRLGKE 624
>gi|326528345|dbj|BAJ93354.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 609
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y ++G I A ++F+++ +D W LI GYG G L A+ LFE M+ GV+
Sbjct: 361 IDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYGAHGHLAEAVGLFEDMKLAGVKP 420
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
V+ +G+L+AC+ G VEKG +F M+ ++P HYAC+V LL + Q R
Sbjct: 421 NDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRHQHYACVVDLLARAGQLDR 476
>gi|326504782|dbj|BAK06682.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 686
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y ++G I A ++F+++ +D W LI GYG G L A+ LFE M+ GV+
Sbjct: 438 IDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYGAHGHLAEAVGLFEDMKLAGVKP 497
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
V+ +G+L+AC+ G VEKG +F M+ ++P HYAC+V LL + Q R
Sbjct: 498 NDVTFLGLLSACNHAGAVEKGWFYFHSMKPDHKIEPRHQHYACVVDLLARAGQLDR 553
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G IDLA ++F+RLP + SW ++I G + A+ LF M+++GV+
Sbjct: 372 IDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNS 431
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE-MQARNVKPTETHYACMVYLL 110
+ V TAC GLVE+G+K F+ M+ ++ P H ACMV LL
Sbjct: 432 FTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLL 477
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A +FD + V++ SW +I Y A+ LF M+ + V++
Sbjct: 271 IALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDY 330
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + V++AC+ G + G+
Sbjct: 331 ITMVSVISACASLGALNTGR 350
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTA 74
+D A K+FD++P +D W TLI GY G + A+ L+ M G+ + V+ +
Sbjct: 78 MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRS 137
Query: 75 CSLGGLVEKGKK 86
C++ + +GK+
Sbjct: 138 CAVLSALREGKE 149
>gi|125524834|gb|EAY72948.1| hypothetical protein OsI_00820 [Oryza sativa Indica Group]
Length = 370
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++FD L K+ SW +I GYGM G AI LFE M+ G++
Sbjct: 40 VDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDA 99
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
S +L ACS GL ++G +FF+ M+ + ++P HYACMV LL
Sbjct: 100 GSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLL 145
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++FD L K+ SW +I GYGM G AI LFE M+ G++
Sbjct: 328 VDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDA 387
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
S +L ACS GL ++G +FF+ M+ + ++P HYACMV LL
Sbjct: 388 GSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLL 433
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY ++ RI+ A +FD +P +D SW ++I G G D A+ LF M +G E
Sbjct: 26 ISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDS 85
Query: 66 VSHIGVLTAC 75
+ + V+ AC
Sbjct: 86 TTLLSVMPAC 95
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
LD Y+ NKIF + K+ SW +I Y G D LF+ M +G+
Sbjct: 127 LDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
++ Y + G ++ A IFD + KD+ SW TLI GY + A LF M
Sbjct: 228 MEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEM 278
>gi|302816274|ref|XP_002989816.1| hypothetical protein SELMODRAFT_130516 [Selaginella moellendorffii]
gi|300142382|gb|EFJ09083.1| hypothetical protein SELMODRAFT_130516 [Selaginella moellendorffii]
Length = 487
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + AN++F +PV++S SW TLI+ Y G + +AI LF M +G+
Sbjct: 323 LNMYGKCGSLREANRVFAAMPVRNSVSWNTLIVAYAQNGHVKLAIGLFRDMDLEGIVPNQ 382
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
VS + + ACS G++E+G K+F M A + PT HY C V LL
Sbjct: 383 VSFLSIFFACSHAGMLEEGCKYFQYMVADHGLVPTPEHYGCFVDLL 428
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y R ++ A K+F + KD+ W +L+ Y G A+ +F M +G Y
Sbjct: 17 LNMYARCHSLEDARKVFAGMCRKDAICWNSLLAAYAQSGSGKEALQIFREMDLEGCNGYG 76
Query: 66 VSHIGVLTACSL-------GGLVEKGKKFFDEMQARNV 96
G + ACS V++ K F M RNV
Sbjct: 77 ----GDVVACSALVTMYGKCKCVDRAKVVFQSMPERNV 110
>gi|413938252|gb|AFW72803.1| hypothetical protein ZEAMMB73_565260 [Zea mays]
Length = 709
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-Y 64
+ Y + GRID A IF+R+ +KD SW ++I YGM G+ A+ +F +++ G
Sbjct: 457 ISMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHSALRVFHQLKDAGTPAPN 516
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + V++ACS GLV +G K F+ M + ++P+ HYAC+V LL
Sbjct: 517 AITFVSVISACSHSGLVSEGHKCFESMGRDHGIEPSMDHYACVVDLL 563
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A ++ LP +D SW ++ G + L+ A+ +F M EDGV
Sbjct: 180 VNMYAKVGDVASARRLLLGLPCRDVVSWTAIVSGCVLNAMLEEALGVFLMMLEDGVLPNN 239
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111
V+ + V+ AC+L G E F + A V H A +V LI
Sbjct: 240 VTMLSVIQACALMGASE----LFGPVHALVVLLELEHDASVVNSLI 281
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE---DGVE 62
+ Y R +ID A +F+ + VKD SW T+I ++ A+++F + G+
Sbjct: 353 MGMYARFEQIDAALLVFEGMEVKDIVSWNTIISCLAKTDRVNEAMDIFSVLHAAAGGGLA 412
Query: 63 YYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L ACS GL+ +G+
Sbjct: 413 PDFVTVLSMLQACSNAGLLHQGQ 435
>gi|357120134|ref|XP_003561784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Brachypodium distachyon]
Length = 466
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT+ G + A +FD + + + +W ++I G G A+ LF+ M +G +
Sbjct: 262 IDMYTKCGLVHEARHLFDNMAERSTVTWNSMIFGLANYGHCGEAVGLFDWMLREGAKPDH 321
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ VLTACS GG+VEKGK + MQ ++P HYACMV+LL
Sbjct: 322 LTFTAVLTACSYGGMVEKGKGLYRVMQEEYGMEPRLEHYACMVHLL 367
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 45/102 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A K+FD +PV+D W L+ GY G + A+ L MR G+
Sbjct: 89 LDMYAKCGLVYSARKVFDEMPVRDLVVWNALLAGYARHGLPEHALALAVKMRGLGLNPDL 148
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
V+ ++ ++ G MQ ++P + +V
Sbjct: 149 VTWNAAVSGFAMAGDDGMASDLVCAMQEDGLQPDVVTWTSLV 190
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + A K+FDR+ KD +W +++ + G A++ FE MR+ GV
Sbjct: 295 LDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQ 354
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + +LTACS GGLV++GK++F+ M+ +++P HY +V LL
Sbjct: 355 ITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALL 399
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R G++D+A +FD+L K+ SW LI G+ G+ + A+ F M +G E
Sbjct: 194 LDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATH 253
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ V ++ + G +E+GK
Sbjct: 254 FTYSSVFSSIARLGALEQGK 273
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+ Y +TG I++A ++FD LP K+ SW ++I+ G AINLFE M G++
Sbjct: 451 IAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKP 509
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
++++GVL+AC+ GLVE+G+K+++ M + ++PT +HYACM+ L
Sbjct: 510 DHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDL 556
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY +TG + A+ +FD +P+K + SW TLI GY G +V+ L M + P
Sbjct: 52 MTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCD----P 107
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++ + GL + F +M + V P++
Sbjct: 108 VSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQ 142
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ G + A +IF++L +D +W +I+GY G + A+ LF M +G E
Sbjct: 350 LDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNS 409
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111
+ +L+ S ++E GK ++ A +K E+ + LI
Sbjct: 410 YTLAAMLSVSSSLTILEHGK----QIHASAIKAGESSTPSVTNALI 451
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +++ ++ +P D SW +I+GY G D AI +F M + V +
Sbjct: 86 YAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTV 145
Query: 69 IGVLTACSLGGLVEKGKKF 87
VL++C+ ++ G+K
Sbjct: 146 SNVLSSCAANQTLDIGRKI 164
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+ Y ++G+ +LA F+++P +D SW ++I GY G A+ +F M E ++
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPD 274
Query: 65 PVSHIGVLTACS 76
+ +L+AC+
Sbjct: 275 NFTLASILSACA 286
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
L+ Y + G +A +FDR+ VK+ ++W LI Y G+ ++A + FE M
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKM 234
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I ANK F +P + +W ++I GY G+ AI LFE MR GV
Sbjct: 435 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 494
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS GLVE+ + +FD M+ ++P HY CM+ + ++
Sbjct: 495 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVR 542
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G A ++FD +P ++ +W L+ GY + + + + +F M E G YP
Sbjct: 120 VNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMG--RYP 177
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
+ L AC V+ GK+
Sbjct: 178 SHYTLGATLNACLASCDVDLGKQ 200
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I ANK F +P + +W ++I GY G+ AI LFE MR GV
Sbjct: 395 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 454
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS GLVE+ + +FD M+ ++P HY CM+ + ++
Sbjct: 455 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVR 502
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y++ G + A++IF + +D S+ TLI G+ G AI L M E+G+E V+
Sbjct: 436 MYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVT 495
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+IGVLTACS GL+ +GK F +QA PT HYACMV LL
Sbjct: 496 YIGVLTACSHAGLLNEGKNVFKSIQA----PTVDHYACMVDLL 534
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVS 67
YTR G++ LA ++FD +P +D SW ++I GY GE ++I LF+ M ++ V+
Sbjct: 335 YTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVT 394
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
VL+AC G ++ D ++ +N+K + + ++++ K
Sbjct: 395 IASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSK 439
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G++DLA +F+++ + A W ++I G G A+ LF M +
Sbjct: 137 LDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI---- 192
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ ++T + G +E +++FDEM R+V
Sbjct: 193 ITWTSMVTGYAKMGDLESARRYFDEMPERSV 223
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A + FD +P + SW + Y A+NLF M E+G+ +
Sbjct: 202 YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTW 261
Query: 69 IGVLTACS 76
+ +++CS
Sbjct: 262 VVTISSCS 269
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
LD + + G +++A IFD L +++ +W +I Y +G+L +A LF+ M + V
Sbjct: 300 LDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDV--- 356
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMV 107
VS ++ + G + F EM +++P E A ++
Sbjct: 357 -VSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVL 399
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y++ G + A++IF + +D S+ TLI G+ G AI L M E+G+E V+
Sbjct: 436 MYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVT 495
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+IGVLTACS GL+ +GK F +QA PT HYACMV LL
Sbjct: 496 YIGVLTACSHAGLLNEGKNVFKSIQA----PTVDHYACMVDLL 534
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVS 67
YTR G++ LA ++FD +P +D SW ++I GY GE ++I LF+ M ++ V+
Sbjct: 335 YTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVT 394
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
VL+AC G ++ D ++ +N+K + + ++++ K
Sbjct: 395 IASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSK 439
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G++DLA +F+++ + A W ++I G G A+ LF M +
Sbjct: 137 LDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI---- 192
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ ++T + G +E +++FDEM R+V
Sbjct: 193 ITWTSMVTGYAKMGDLESARRYFDEMPERSV 223
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A + FD +P + SW + Y A+NLF M E+G+ +
Sbjct: 202 YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTW 261
Query: 69 IGVLTACS 76
+ +++CS
Sbjct: 262 VVTISSCS 269
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
LD + + G +++A IFD L +++ +W +I Y +G+L +A LF+ M + V
Sbjct: 300 LDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDV--- 356
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMV 107
VS ++ + G + F EM +++P E A ++
Sbjct: 357 -VSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVL 399
>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
Length = 712
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G++ A +IF L KD ++ +LI GYGM GE A+ LFE M+ ++
Sbjct: 460 VDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDH 519
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ I VL+ACS GLV + + F EMQ+ + P HYACM L
Sbjct: 520 ITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLF 565
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G +D A +FD + +D+ SW ++I Y G A LFE+M+ +E
Sbjct: 222 ISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINV 281
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
V+ + C G + K +M+
Sbjct: 282 VTWNIIAGGCLRVGNFTQALKLLSQMR 308
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A ++F + KDS SW ++ILG + G +D LF M DG++
Sbjct: 432 IDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTH 491
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQKAR 118
S IG+L AC+ GLV+KG ++F+ M+ ++P HY C+V LL + + R
Sbjct: 492 GSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDR 545
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G +DLA ++FDR+ K+ SW ++ GY G+L A LF M V
Sbjct: 300 IDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNV---- 355
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
+S +++ C+ K F EM NVKP E
Sbjct: 356 ISWTCMISGCAQANQCSDALKLFQEMMDANVKPDE 390
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G + A K+F+ +P+++ SW +I G + A+ LF+ M + V+ ++
Sbjct: 334 YATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITV 393
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
VL+ACS GL++ G+ + M ++K
Sbjct: 394 SSVLSACSHLGLLDTGQTVHEYMCRHDIKS 423
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 35/123 (28%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G + A K+FD++ +D SW +LI GY ++LF MRE V V+
Sbjct: 202 YGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTM 261
Query: 69 IGVLTACS-------------------------LG----------GLVEKGKKFFDEMQA 93
+ V+ ACS LG GLV+ ++ FD MQ
Sbjct: 262 VKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQE 321
Query: 94 RNV 96
+N+
Sbjct: 322 KNI 324
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
+LI YG G +D+A +F+ M+E + VS +LT + G + KK F+EM R
Sbjct: 298 SLIDMYGRRGLVDLARRVFDRMQEKNI----VSWNAMLTGYATAGDLVAAKKLFNEMPIR 353
Query: 95 NVKPTETHYACMVYLLIKYNQ 115
NV + CM+ + NQ
Sbjct: 354 NV----ISWTCMISGCAQANQ 370
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+ Y +TG I++A ++FD LP K+ SW ++I+ G AINLFE M G++
Sbjct: 451 IAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKP 509
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
++++GVL+AC+ GLVE+G+K+++ M + ++PT +HYACM+ L
Sbjct: 510 DHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDL 556
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY +TG + A+ +FD +P+K + SW TLI GY G +V+ L M + P
Sbjct: 52 MTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCD----P 107
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++ + GL + F +M + V P++
Sbjct: 108 VSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQ 142
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ G + A +IF++L +D +W +I+GY G + A+ LF M +G E
Sbjct: 350 LDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNS 409
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111
+ +L+ S ++E GK ++ A +K E+ + LI
Sbjct: 410 YTLAAMLSVSSSLTILEHGK----QIHASAIKAGESSTPSVTNALI 451
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +++ ++ +P D SW +I+GY G D AI +F M + V +
Sbjct: 86 YAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTV 145
Query: 69 IGVLTACSLGGLVEKGKKF 87
VL++C+ ++ G+K
Sbjct: 146 SNVLSSCAANQTLDIGRKI 164
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
L+ Y + G +A +FDR+ VK+ ++W LI Y G+ ++A + FE M
Sbjct: 184 LNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKM 234
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+ Y ++G+ +LA F+++P +D SW ++I GY G A+ +F M E ++
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPD 274
Query: 65 PVSHIGVLTACS 76
+ +L+AC+
Sbjct: 275 NFTLASILSACA 286
>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
Length = 488
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 63/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YTR G + A + F + K+ W ++I G+ G ++A+ LF MR+ G+E
Sbjct: 240 INMYTRCGSMGDAFRCFSSVASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNG 299
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL ACS GGLV +G K+F+ M++ +K T HY C++ LL
Sbjct: 300 VTFLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGCLIDLL 344
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+ A K+FD +PVK SW L+ G +LD A +F M E V VS
Sbjct: 110 YARLGRLGDARKMFDGMPVKTVVSWNVLLDGIVRASDLDAAWEVFVEMPERNV----VSW 165
Query: 69 IGVLTACSLGGLVEKGKKFFDEM 91
V+ G V++ F EM
Sbjct: 166 NTVIAGFVRHGWVQEAVDLFAEM 188
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
LD R +D A ++F +P ++ SW T+I G+ G + A++LF M
Sbjct: 138 LDGIVRASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEM 188
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A+++F+ + + +SW +I G+ M G + A +LF MR + VE
Sbjct: 345 IDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDD 404
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS GL++ G++ F M Q N+ P HY CM+ LL
Sbjct: 405 ITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLL 450
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A +F+ L KD SW TLI GY A+ LF+ M G
Sbjct: 237 IVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSG 296
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ G ++ G+
Sbjct: 297 ECPNDVTLLSVLPACAHLGAIDIGR 321
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G ++ A K+FD +D S LI GY G+ A +F+ + E V
Sbjct: 106 ISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDV---- 161
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++T G E+ + F EM NV+P E
Sbjct: 162 VSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G A K+FD + +D SW +I GY G + A+ LF+ M V +
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199
Query: 69 IGVLTACSLGGLVEKGKK 86
+ V++AC+ G +E G++
Sbjct: 200 VSVVSACAQSGSIELGRQ 217
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDR--LPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
++ ++ Y++ G + A K+FD L +D SW +I Y G AINLF M+E
Sbjct: 323 VVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQE 382
Query: 59 DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDE-MQARNVKPTETHYACMVYL 109
GV V+ +G+LTACS GLVE+G K+FDE ++ R+++ E HYAC+V L
Sbjct: 383 LGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDL 434
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
+ GR++ A +FD++PV++ SW +I GY LD A+ LF+ M E + + G
Sbjct: 169 KNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITG 228
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNV 96
+ G + + +K F EMQ +NV
Sbjct: 229 FIQ----NGELNRAEKLFGEMQEKNV 250
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + R+D A ++F R+P +D SW T+I G+ GEL+ A LF M+E V ++
Sbjct: 198 YAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNV----ITW 253
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN-VKPT 99
++T GL E+ + F +M A N +KP
Sbjct: 254 TAMMTGYVQHGLSEEALRVFIKMLATNELKPN 285
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G A +F R+P ++ SW T+I G ++ A LF+ M++ V
Sbjct: 102 VDGYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDV---- 157
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS ++ + G VE + FD+M RNV
Sbjct: 158 VSWTTMVAGLAKNGRVEDARALFDQMPVRNV 188
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + ++ A ++F +P+++ SW T++ GY G A++LF M E V VS
Sbjct: 74 YIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNV----VSW 129
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
++TA G +E ++ FD+M+ R+V T A
Sbjct: 130 NTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVA 165
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G ID A K+F+ +P +D W T+I GY G + A LF+ R D + V+
Sbjct: 13 REGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFD--RWDAKKNV-VTWTA 69
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ V++ ++ F EM RNV T
Sbjct: 70 MVNGYIKFNQVKEAERLFYEMPLRNVVSWNT 100
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G I + ++FD + +D SW +LI YGM G AI +FE M G
Sbjct: 328 ITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSY 387
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
+S I VL ACS GLVE+GK F+ M ++ + P HYACMV LL + N+
Sbjct: 388 ISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANR 438
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + AN +F +P K+ SW +I + A+ LF+ M + + P
Sbjct: 225 LDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVP 284
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ +E+GK
Sbjct: 285 NSVTMVNVLQACAGLAALEQGK 306
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++FD + + +SW +I G+ M G + A ++F MR+DG+E
Sbjct: 380 IDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDD 439
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M + + P HY CM+ LL
Sbjct: 440 ITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLL 485
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I A K+FD +PVKD SW LI GY G A+ LF+ M + V+ +
Sbjct: 179 YASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTM 238
Query: 69 IGVLTACSLGGLVEKGKK 86
+ VL+AC+ +E G++
Sbjct: 239 VTVLSACAQSASIELGRQ 256
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G ++ A+ +F+ L KD SW TLI GY + A+ LF+ M G
Sbjct: 272 IVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 331
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G ++ G+
Sbjct: 332 ESPNEVTMLSILPACAHLGAIDIGR 356
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + GR + A K+FD+ +D S+ LI GY G + A +F+ + V VS
Sbjct: 147 MYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDV----VS 202
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117
+++ + G ++ + F EM NVKP E+ MV +L Q A
Sbjct: 203 WNALISGYAETGNYKEALELFKEMMKTNVKPDES---TMVTVLSACAQSA 249
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F +P KD +W LI+G M G+ A+ LF M+ V+
Sbjct: 381 VDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 440
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL ACS GLV +G +F+ M + ++P+ HY CMV +L
Sbjct: 441 ITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDML 486
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G LA +F+++P K+ W +I G+ + + A++LF M+ GV+
Sbjct: 280 MDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDK 339
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ +L AC+ G +E GK
Sbjct: 340 VTMASLLIACTHLGALELGK 359
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+ G + A K+FD++ K SW T+I Y AI LF M V+
Sbjct: 179 MNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNE 238
Query: 66 VSHIGVLTACSLGGLVEKGK---KFFDE 90
++ + VLTAC+ +E K K+ DE
Sbjct: 239 ITLVNVLTACARSRDLETAKQVHKYIDE 266
>gi|242066372|ref|XP_002454475.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
gi|241934306|gb|EES07451.1| hypothetical protein SORBIDRAFT_04g031840 [Sorghum bicolor]
Length = 706
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-Y 64
+ Y + GRID A IF+R+ +KD SW ++I YGM G+ +A+ +F +++ G
Sbjct: 454 ITMYAKLGRIDFAEMIFERMDIKDLVSWNSMINAYGMHGDGHLALRVFHQLKDAGTPVPN 513
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + V++ACS GL+ +G K F+ M + +++P+ HYAC+V LL
Sbjct: 514 AITFVSVISACSHSGLISEGYKCFESMGRDHSIEPSMDHYACVVDLL 560
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A ++ LP +D SW +I G + G L+ + +F M EDGV
Sbjct: 178 VNMYAKAGDVVSARRLVLGLPCRDVVSWTAIISGCVLNGMLEEGLEVFVMMLEDGVLPNN 237
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111
V+ + V+ ACSL G E F + A V H A +V LI
Sbjct: 238 VTMLSVIQACSLMGASE----LFSPVHALVVLLELEHDASVVNSLI 279
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R +ID A+ +F+ + VKD SW T+I ++ A+ LF + P
Sbjct: 351 MGMYARFEQIDAAHFVFEGMKVKDIVSWNTIISCLAKSDRVNEAMELFSVLHAAAGGLAP 410
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + +L ACS GL+ +G+
Sbjct: 411 DFVTVLSILQACSNAGLLHQGQ 432
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++G + A K+FDR+ +D +W T++ + G A+ FE +R+ G++
Sbjct: 306 LGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQ 365
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VLTACS GGLV++GK++FD M+ NV+P HY V LL
Sbjct: 366 ITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLL 410
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R ++D+A ++FD L K+ SW LI G+ G+ + + F M+ +G
Sbjct: 205 LDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATH 264
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ V +A + G +E+G+
Sbjct: 265 FTYSSVFSALARIGALEQGR 284
>gi|242094160|ref|XP_002437570.1| hypothetical protein SORBIDRAFT_10g029530 [Sorghum bicolor]
gi|241915793|gb|EER88937.1| hypothetical protein SORBIDRAFT_10g029530 [Sorghum bicolor]
Length = 503
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A+++F+R+ ++ +W +I+GY G A+ LF M++ V
Sbjct: 250 VNMYAKCGEVSYASRLFERMAARNVWTWSVMIMGYSQHGMAQAALELFNRMKDASVAPNY 309
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ +G+L CS GLV +G+KFF EMQ +KP THY+ MV +L
Sbjct: 310 VTFLGLLCGCSHAGLVTEGRKFFHEMQHVYGIKPMMTHYSAMVDVL 355
>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
Length = 631
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ ++F +P ++ SW +I GY G++D+A+ LFE M+ + V Y
Sbjct: 302 VDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVANY- 360
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I VL+ACS GG V+ G + F+ M+ R ++P HYAC+ +L
Sbjct: 361 VTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADML 406
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
D Y++TG A ++FD +P ++ A W I + G AI+ F R G E
Sbjct: 100 FDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDL 159
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ L AC+ ++ G++
Sbjct: 160 ITFCAFLNACADARCLDLGRQL 181
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G D A K+F+ + ++ S+ ++ILGY M G A+ LF M + +
Sbjct: 319 IDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK 378
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ IG+L+ACS GLVE+G++ F +M+ V P+ HYACMV LL
Sbjct: 379 VTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLL 424
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A+ +FD LP+KD +W ++ GY G A+ F+ M++ G+E V+
Sbjct: 219 YAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
GV++AC+ G V+ D + P+
Sbjct: 279 AGVISACAQLGAVKHANWIRDIAERSGFGPS 309
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+FD + +D SW LI+ Y G+++ A LF+ + +
Sbjct: 185 IDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDM---- 240
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
V+ ++T + G ++ ++F +MQ ++ E A ++
Sbjct: 241 VAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + ++ K+FD++P+++ +W +++ YGM G AI++ M GV+
Sbjct: 555 VDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNE 614
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I V ACS G+V +G K F M+ V+P+ HYAC+V LL
Sbjct: 615 VTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLL 660
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM--------- 56
+D Y+R G+ID+A +IF ++ +D +W T+I GY + A+ + M
Sbjct: 443 MDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASE 502
Query: 57 REDGVEYYP--VSHIGVLTACSLGGLVEKGKK 86
R V P ++ + +L +C+ + KGK+
Sbjct: 503 RASRVSLKPNSITLMTILPSCAALSALAKGKE 534
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G K+FDR+ ++ SW +LI + ++A+ F M ++ VE
Sbjct: 136 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSS 195
Query: 66 VSHIGVLTACS 76
+ + V ACS
Sbjct: 196 FTLVSVALACS 206
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ G I A +IFD+LP +D+ +W ++I+G + G + AI L+ M+E V+
Sbjct: 149 LGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNN 208
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
++ +G+LTAC+ G VE G +FF M++ N+ P H+AC+V L +
Sbjct: 209 ITFVGLLTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCR 256
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G +D +FD + +D W +I GY G + A+ LFE M+ ++
Sbjct: 48 LEMYVKCGAVDDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPND 107
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
V+ + VL+AC+ G VE G++ +++R
Sbjct: 108 VTLVSVLSACAQLGSVETGERIGSYVESR 136
>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 876
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G I+ A++IF R +D SW ++I GY G+ A+ +FE M++ +E
Sbjct: 546 VTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDA 605
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
++ IGV++AC+ GLV KG+ +F+ M ++ PT HY+CM+ L
Sbjct: 606 ITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDL 650
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD + + G I A K+F+ + KD +W ++ GY GE + A +F + +G++
Sbjct: 444 LDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNE 503
Query: 66 VSHIGVLTACSL-GGLVEKGKKF 87
+ ++ AC+ VE+GK+F
Sbjct: 504 FTFCSIINACTAPTASVEQGKQF 526
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
+D YT+TG + ++FD + +D SW +L+ GY D LF M+ +G +Y
Sbjct: 144 VDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDY 203
Query: 64 YPVSHIGVLTACSLGGLVEKG 84
Y VS V+ A + G V G
Sbjct: 204 YTVS--TVIAALANQGAVAIG 222
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 10 TRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
T+ ID A +F + V+ SW +I GY G+ D A+NLF MR +GV+ ++
Sbjct: 350 TKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTY 409
Query: 69 IGVLT 73
+LT
Sbjct: 410 STILT 414
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ +++G + A +FD + KDS SW ++I G+ + G+ A F M+ G +
Sbjct: 245 ISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTH 304
Query: 66 VSHIGVLTACS 76
+ V+ +C+
Sbjct: 305 ATFASVIKSCA 315
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G ID A ++F++ P KD SW T+I G M G A+ +F+ M+++G+
Sbjct: 292 IDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPD 351
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL AC+ GGLV++G +F M+A+ + P HY CM+ LL
Sbjct: 352 DVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLL 398
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
L Y R G++D A ++F +P +D SW T++ GY + G A+ LF M +
Sbjct: 188 LHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVH 247
Query: 65 P--VSHIGVLTACSLGGLVEKG 84
P + +L AC+ G +E G
Sbjct: 248 PNVPTMSTILGACAGAGCLETG 269
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPV 66
Y +G + ++ ++FD +P + + +W ++ Y G++D A +F AM R D V + V
Sbjct: 160 YGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTV 218
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G ID A ++F++ P K D SW T+I G M G A+ +F+ M+++G+
Sbjct: 293 IDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPD 352
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL AC+ GGLV++G +F M+A+ + P HY CM+ LL
Sbjct: 353 DVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLL 399
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
L Y R G++D A ++F +P +D SW T++ GY + G A+ LF M +
Sbjct: 189 LHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVH 248
Query: 65 P--VSHIGVLTACSLGGLVEKG 84
P + +L AC+ G +E G
Sbjct: 249 PNVPTMSTILGACAGAGCLETG 270
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPV 66
Y G++ ++ ++FD +P + + +W ++ Y G++D A LF AM R D V + V
Sbjct: 161 YGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTV 219
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G I A ++FD + K+ +W T+I GYG+ G+ A+N+F M G+ P
Sbjct: 462 IGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTP 521
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS GLV++G + F+ M R +P+ HYACMV +L
Sbjct: 522 VTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDIL 567
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ I+ A K+FD P K SW +I GY G + AI+LF M++ PV+
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTI 423
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
+L+AC+ G + GK D +++ + + +
Sbjct: 424 TCILSACAQLGALSLGKWVHDLVRSTDFESS 454
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGY 40
+ Y + R++ A K+FDR+P KD+ W T+I GY
Sbjct: 161 VKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY 195
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G D A K+F+ + ++ S+ ++ILGY M G A+ LF M + +
Sbjct: 319 IDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK 378
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ IG+L+ACS GLVE+G++ F +M+ V P+ HYACMV LL
Sbjct: 379 VTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLL 424
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A+ +FD LP KD +W ++ GY G A+ F+ M++ G+E V+
Sbjct: 219 YAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTL 278
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
GV++AC+ G V+ D + P+
Sbjct: 279 AGVISACAQLGAVKHANWIRDIAERSGFGPS 309
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+FD + +D SW LI+ Y G+++ A LF+ + +
Sbjct: 185 IDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDM---- 240
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
V+ ++T + G ++ ++F +MQ ++ E A ++
Sbjct: 241 VAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I+ ++++F + D SW L+ GY G+ + + LFE+M G + V+
Sbjct: 419 LYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVT 478
Query: 68 HIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
IGVL+ACS GLV+KG + F+ M + + P E HY CM+ L +
Sbjct: 479 FIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSR 524
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I A +F ++ K+ SW +++GYG G + A+ +F M+ +G+E
Sbjct: 316 VDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDD 375
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 376 FTLGSVISSCANLASLEEGAQF 397
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R RI+ + ++F + KDS SW +I G+ G AI+LF MR + +E +
Sbjct: 220 RCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGS 279
Query: 71 VLTACSLGGLVEKGKK 86
VLTAC +++GK+
Sbjct: 280 VLTACGGVMALQEGKQ 295
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
Y + RI A ++FD++P ++ SW TL+ Y L L +F AM
Sbjct: 54 YAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAM 101
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG----- 60
+D Y + G ++LA+++FD++P+++ +W LI+ YGM G+ + A+ LF M G
Sbjct: 798 VDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNRE 857
Query: 61 -VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
+ V++I + ACS G+V++G F M+A + V+P HYAC+V LL
Sbjct: 858 VIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLL 909
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 22/110 (20%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-------- 57
+D Y+R GR++++ IF R+ +D SW T+I G + G D A+NL M+
Sbjct: 679 MDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGS 738
Query: 58 --------EDGVEYYP--VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ GV + P V+ + VL C+ + KGK E+ A VK
Sbjct: 739 DTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGK----EIHAYAVK 784
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A ++FD +P +D SW ++I E +++++LF M + V+
Sbjct: 374 VNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTS 433
Query: 66 VSHIGVLTACS-LGGLVEKGKK 86
+ + V ACS + G V GK+
Sbjct: 434 FTLVSVAHACSHVRGGVRLGKQ 455
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR++ A +F KD SW T+I + A+ M DGV V+
Sbjct: 478 YARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTL 537
Query: 69 IGVLTACS 76
VL ACS
Sbjct: 538 ASVLPACS 545
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G ID A ++F++ P KD SW T+I G M G A+ +F+ M+++G+
Sbjct: 292 IDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPD 351
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL AC+ GGLV++G +F M+A+ + P HY CM+ LL
Sbjct: 352 DVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLL 398
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
L Y R G++D A ++F +P +D SW T++ GY + G A+ LF M +
Sbjct: 188 LHQYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVH 247
Query: 65 P--VSHIGVLTACSLGGLVEKG 84
P + +L AC+ G +E G
Sbjct: 248 PNVPTMSTILGACAGAGCLETG 269
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPV 66
Y +G + ++ ++FD +P + + +W ++ Y G++D A +F AM R D V + V
Sbjct: 160 YGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDVVSWNTV 218
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F +P KD +W LI+G M G+ A+ LF M+ V+
Sbjct: 250 VDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 309
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL ACS GLV +G +F+ M + ++P+ HY CMV +L
Sbjct: 310 ITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDML 355
>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
Length = 781
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRID A++ F+ +PV++ SW ++I GY G D A+ LF M+ G
Sbjct: 450 VDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDH 509
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS GLV++G ++F M + + P HY+CMV LL
Sbjct: 510 ITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLL 555
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID A +F + KDS SW ++I G + A+ + +MR+ G+
Sbjct: 145 INMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSN 204
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
+ I L++C+ G + G++ E
Sbjct: 205 FALISALSSCASLGCILLGQQTHGE 229
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ Y R G A K+FD +P ++ +W LI GY G + A + + M +G
Sbjct: 42 INVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEG 96
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y R+G A ++FD++ K++ +W ++I+ G+ + A+ LFE M GVE
Sbjct: 473 ITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 532
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
++++GVL+ACS G V +GK+++D+++ + + P +HYACMV LL +
Sbjct: 533 RITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 581
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A +F+R+PV+ +SW ++ LG +D+A +LFE+M + +
Sbjct: 206 LNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI---- 261
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
VS ++ + GL K K F M
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRM 287
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G ++ A ++F + +D +W +I+GY G D AI+LF +M G E
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 431
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL+ C+ ++ GK+
Sbjct: 432 YTLAAVLSVCASLACLDYGKQI 453
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L + ++GR+ A +F +P +D+ SW +++G G AI M DG
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ 164
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL++C++ G+K
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRK 185
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F D SW +LI+GY G A+NLF M+ GV+
Sbjct: 605 IDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNE 664
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+++GVL+ACS GLVE+G F++ M+ + PT H +CMV LL +
Sbjct: 665 VTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLAR 712
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A K FD + +++ SW +I GY G+ + AI ++ M + G P
Sbjct: 199 LNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDP 258
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ ++ AC + G ++ G++
Sbjct: 259 LTFGSIIKACCIAGDIDLGRQL 280
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YTR G+I A+ +F + KD SW ++I G+ LG A+ LF M G Y P
Sbjct: 300 ISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGF-YQP 358
Query: 66 VSHI--GVLTAC 75
I V +AC
Sbjct: 359 NEFIFGSVFSAC 370
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + A K+FDR+ KD +W T++ + G A++ FE MR+ G+
Sbjct: 295 LDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQ 354
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + +LTACS GGLV++GK++F+ M+ +++P H+ +V LL
Sbjct: 355 VTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALL 399
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R G +D+A +FD+L K+ SW LI G+ G+ + A+ F M +G E
Sbjct: 194 LDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATH 253
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ V ++ + G +E+GK
Sbjct: 254 FTYSSVFSSIARLGALEQGK 273
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y + G + A K+FD + KD SW +LI GY + AI L M
Sbjct: 93 IHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGM 143
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A IF L +D SW T+I GY G+ + A+ F M +G+
Sbjct: 396 VDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDE 455
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ IGVL+ACS GLVE+GKK FD M + + P+ HYACMV +L
Sbjct: 456 ATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDIL 501
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + ++ A FDRL +D SW +I GY + + A+ F M+ +G++
Sbjct: 295 VDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNE 354
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ L+ CS +E G++
Sbjct: 355 YTLASCLSGCSHMATLENGRQL 376
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTA 74
++LA ++F +P K+ SW L+ GY LG+ + LF M+E ++ + VL
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60
Query: 75 CSLGGLVEKGK 85
C+ G + +GK
Sbjct: 61 CANTGSLREGK 71
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
+D Y++ G + A K+F ++ D +W +I G G A LF MR G
Sbjct: 93 VDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQ 152
Query: 64 YPVSHIGVLTACSLGGL 80
+ +S + V TA ++G L
Sbjct: 153 FTLSSL-VSTATNMGDL 168
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y R+G A ++FD++ K++ +W ++I+ G+ + A+ LFE M GVE
Sbjct: 473 ITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 532
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
++++GVL+ACS G V +GK+++D+++ + + P +HYACMV LL +
Sbjct: 533 RITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 581
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A+ +F+R+PV+ +SW ++ LG +D+A +LFE+M +
Sbjct: 206 LNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSI---- 261
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
VS ++ + GL K K F M
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRM 287
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G ++ A ++F + +D +W +I+GY G D AI+LF +M G E
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 431
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL+ C+ ++ GK+
Sbjct: 432 YTLAAVLSVCASLACLDYGKQI 453
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L + ++GR+ A +F +P +D+ SW +++G G AI M DG
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ 164
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL++C++ G+K
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRK 185
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G+I+LA +IF + KD W ++I GYGM G A+ ++ M E+G++
Sbjct: 474 VDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPN 533
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
+ + +L+ACS LVE+G F+ M+ N++P E HYAC+V LL +
Sbjct: 534 QTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSR 582
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ F + G+I A ++FD +P KD W ++I GY G DVA LF M G++ P
Sbjct: 172 ISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSP 231
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ ++ AC G ++ GK
Sbjct: 232 ITMTSLIQACGGIGNLKLGK 251
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 48/86 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A +F+R+ ++ +W +++G G + A+ LF M+E+G+
Sbjct: 373 VDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANS 432
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ + ++ +C+ G +++G+ +
Sbjct: 433 VTFVSLVHSCAHLGSLKRGRSIHGHL 458
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGY---GMLGELDVAINLFEAMREDGVE 62
+D Y++ G I+ A +F ++P ++ SW +I G G++GE + +LF +
Sbjct: 273 VDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGE---SFDLFHRLVRSSGG 329
Query: 63 YYPVSHIGVLTACSLGGLVEKGK 85
+ + + +L CS + GK
Sbjct: 330 FDLTTIVSLLQGCSQTASLATGK 352
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y R+G A ++FD++ K++ +W ++I+ G+ + A+ LFE M GVE
Sbjct: 367 ITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 426
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
++++GVL+ACS G V +GK+++D+++ + + P +HYACMV LL +
Sbjct: 427 RITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLAR 475
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A +F+R+PV+ +SW ++ LG +D+A +LFE+M + +
Sbjct: 100 LNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI---- 155
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
VS ++ + GL K K F M
Sbjct: 156 VSWNAMIAGYNQNGLDAKALKLFSRM 181
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G ++ A ++F + +D +W +I+GY G D AI+LF +M G E
Sbjct: 266 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 325
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL+ C+ ++ GK+
Sbjct: 326 YTLAAVLSVCASLACLDYGKQI 347
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
+ ++GR+ A +F +P +D+ SW +++G G AI M DG +
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60
Query: 68 HIGVLTACSLGGLVEKGKK 86
VL++C++ G+K
Sbjct: 61 LTNVLSSCAVTQAGAVGRK 79
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A+++F+ + K +SW +I G+ M G D + ++F MR++G+E
Sbjct: 368 IDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDD 427
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M Q + P HY CM+ LL
Sbjct: 428 ITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLL 473
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A K+FD +PVKD SW +I GY G A+ LF+ M + V +
Sbjct: 167 YASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226
Query: 69 IGVLTACSLGGLVEKGKK 86
+ V++AC+ G +E G++
Sbjct: 227 VTVVSACAQSGSIELGRQ 244
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A +F+ LP KD SW TLI GY + A+ LF+ M G
Sbjct: 260 IVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 319
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G ++ G+
Sbjct: 320 ETPNDVTMLSILPACAHLGAIDIGR 344
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR++ A+K+FD P +D S+ LI GY G ++ A +F+ + V
Sbjct: 133 ISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDV---- 188
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS +++ + G ++ + F +M NV+P E+
Sbjct: 189 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDES 224
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID A +F + KD S+ +I+G+ M G+ D A+ +F M GV
Sbjct: 381 VDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDH 440
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GL+E+G++ F +M + +++P HY CMV LL
Sbjct: 441 VTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLL 486
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G+ LA ++F +PVK+ SW ++I G G A+++F M+ G++
Sbjct: 280 LDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDS 339
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ +GVL +C+ G +E GK
Sbjct: 340 VTLVGVLNSCANLGDLELGK 359
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY +G I+ K+FD+ P D SW TLI Y +G AI F M
Sbjct: 180 MRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTADR--- 236
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
++ + VL+ACS G GKK M
Sbjct: 237 MTLVVVLSACSQLGDFTLGKKILAYM 262
>gi|414591914|tpg|DAA42485.1| TPA: pentatricopeptide repeat protein PPR986-12 [Zea mays]
Length = 548
Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++LA ++FDR+ +D ASW ++L G + +++LF+ M R +G+
Sbjct: 214 VDLYGKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPN 273
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
++ + VL+AC+ GGLV++G+++F M + + ++P HY CMV +L +
Sbjct: 274 AITFVAVLSACNHGGLVDEGRRYFAAMVSEHGIRPRIEHYGCMVDILAR 322
Score = 38.5 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY GR A +F R+P + SW T + G+ A++LF M+ D + P +
Sbjct: 108 FYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDRPDLAPDA 167
Query: 68 HI--GVLTACSLGGLVEKG 84
+ VL AC+ G + G
Sbjct: 168 YTVQSVLGACAATGALSLG 186
>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 872
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I+ A ++F R KD SW ++I GY G+ A+++F+ M++ V+
Sbjct: 541 LTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDS 600
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK--PTETHYACMVYLLIKYNQ 115
V+ IGV AC+ GLVE+G+K+FD M R+ K PT+ H +CMV L + Q
Sbjct: 601 VTFIGVFAACTHAGLVEEGEKYFDIM-VRDCKIAPTKEHNSCMVDLYSRAGQ 651
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G++D A K+F + KD +W ++ GY GE + AI +F + + GV+
Sbjct: 439 LDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNE 498
Query: 66 VSHIGVLTAC-SLGGLVEKGKKF 87
+ +L C + + +GK+F
Sbjct: 499 FTFSSILNVCAATTASMGQGKQF 521
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
++ Y + G + A +FD+ VK +W ++I GY G LD+ A+ +F +MR + V
Sbjct: 240 INLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG-LDLEALGMFYSMRLNHVRLS 298
Query: 65 PVSHIGVLTACS 76
S ++ C+
Sbjct: 299 ESSFASIIKLCA 310
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE--- 62
+D Y + +FD + ++ +W TLI GY + + LF M+++G +
Sbjct: 139 VDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNS 198
Query: 63 YYPVSHIGVLTACSLGG 79
+ + +GVL +GG
Sbjct: 199 FTFAAALGVLAEEGVGG 215
>gi|242043708|ref|XP_002459725.1| hypothetical protein SORBIDRAFT_02g009440 [Sorghum bicolor]
gi|241923102|gb|EER96246.1| hypothetical protein SORBIDRAFT_02g009440 [Sorghum bicolor]
Length = 691
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++GR+ +A +FD + D S+ ++I G+GM G+ V++ F+ M + G+
Sbjct: 438 IDMYSKSGRLSVAQNVFDTMDDHDMISFTSMIAGFGMQGKGIVSLRFFKRMIDSGIMPDA 497
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
+ + VL+ACS GLV++G++ FD+M ++ +KP HY+CMV L
Sbjct: 498 IIMVTVLSACSHSGLVDEGEELFDKMVKSYGIKPQMEHYSCMVDL 542
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A +F+ + +D SW ++I GY G+ A+ LF M+ +G E
Sbjct: 201 VSMYAKCGDVVAARGVFEGMEHRDVVSWNSMISGYAASGQWREAVELFRRMQAEGAEVNS 260
Query: 66 VS 67
V+
Sbjct: 261 VT 262
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y ++G +D + ++F ++P K++ +W ++ G G + +I+LFE M E+G+
Sbjct: 554 DMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEH 613
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ + +L ACS GLVE+ +F+ MQA + P HY CMV +L +
Sbjct: 614 TFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLAR 659
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+ G++ A +F+++P ++S SW T+I GY A+N F AM G ++
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514
Query: 69 IGVLTACSLGGLVEKGKKFFDEM 91
VL AC+ +E G+ E+
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEI 537
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y G + A ++ D +P ++ SW TLI + G+ A+ L+ M DG
Sbjct: 320 LDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNI 379
Query: 66 VSHIGVLTACS 76
VL+AC+
Sbjct: 380 SCFSSVLSACA 390
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+D Y + + A ++F+ LP K++ W +LI GY G++ A LF M
Sbjct: 421 IDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKM 471
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y R G A+++FD + V+D SW L+ Y LG+L A + +AM
Sbjct: 289 ITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAM 339
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y ++G +D + ++F ++P K++ +W ++ G G + +I+LFE M E+G+
Sbjct: 554 DMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEH 613
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ + +L ACS GLVE+ +F+ MQA + P HY CMV +L +
Sbjct: 614 TFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCMVDVLAR 659
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y G +D A ++ D +P ++ SW TLI + G+ A+ L+ M DG
Sbjct: 320 LDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNI 379
Query: 66 VSHIGVLTACS 76
VL+AC+
Sbjct: 380 SCFSSVLSACA 390
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+ G++ A +F+++P ++S SW T+I GY A+N F AM G ++
Sbjct: 455 YSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITL 514
Query: 69 IGVLTACSLGGLVEKGKKFFDEM 91
VL AC+ +E G+ E+
Sbjct: 515 SSVLLACANLCSLEMGRMVHAEI 537
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y R G A ++FD + V+D SW L+ Y LG+LD A + +AM
Sbjct: 289 ITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAM 339
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+D Y + + A ++F+ LP K++ W +LI GY G++ A LF M
Sbjct: 421 IDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKM 471
>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 989
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D ++R G + A ++FD VKDS +W +I Y M G+ + A+ +F M + G
Sbjct: 780 VVNALIDMHSRCGSLSFARELFDSSVVKDSVTWSAMINSYSMHGDCESALAIFSMMIDSG 839
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ ++ + +L+ACS G VE+ + F +Q + P HYACMV LL
Sbjct: 840 VKPDDITFVIILSACSHSGFVEQARALFKSLQIDHGITPRMEHYACMVDLL 890
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I + +FD + KD SW +I GY + G L A+ + M++DG+
Sbjct: 182 LDMYAKAGWIGASRTVFDFMGQKDLISWNAMISGYSLNGSLREAVEATQEMQQDGMRANA 241
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ + + AC G + G
Sbjct: 242 STLVCIAGACGAAGDSDAG 260
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 45/73 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + + K+F ++ V+ SW T+I GY + +L+ ++ LF MR++G+++
Sbjct: 485 LAMYGDCGELSSSYKLFQKMEVRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDV 544
Query: 66 VSHIGVLTACSLG 78
V+ IG++++ S+
Sbjct: 545 VTLIGLISSISVA 557
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y++ G +D A +FD K++ W ++I GY + E ++A++ F M+ +
Sbjct: 379 VVSALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMALDTFCKMQIEN 438
Query: 61 VEYYPVSHIGVLTAC 75
V + I V+ C
Sbjct: 439 VAPDATTVIKVIYGC 453
>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D + KIF + KD+ SW ++ GY + G AI LF M++ +
Sbjct: 334 IDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDS 393
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
S I VL+AC GL+ +G+K FD M ++ ++P HYACM LL
Sbjct: 394 FSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLL 439
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
P + Y R G +D A ++F + +D +W +I + G A++LF +M+ +G++
Sbjct: 28 PIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQA 87
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
V + L AC+ ++ GK
Sbjct: 88 NKVILLSSLPACAEVSSLKLGKS 110
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G LA +F+R+P KD +W +I GY +GE A+ +F ++ +
Sbjct: 131 VSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNS 190
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +G+L A +L +++G
Sbjct: 191 GTMVGLLPAFALLNDLDQGS 210
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R G++D A +F +P K+ SW +I M G A+ F +M D
Sbjct: 385 LDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDE 444
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQKAR 118
++ + +L+AC+ GGL+E G+ +F M+ NVKP HYACMV LL + Q A+
Sbjct: 445 ITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAK 498
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + + + FD + ++ SW ++I GY G A +LFE MR G+
Sbjct: 152 LHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADE 211
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +L ACS G +E GK + R +
Sbjct: 212 FTLVSLLFACSAEGNLEFGKLVHSHLLVRGCR 243
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A+ FD +P K++ SW +++ +D A + FE + E +
Sbjct: 253 VDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSI---- 308
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
+S +++ GG + ++ M+ + P E
Sbjct: 309 ISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDE 343
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ ID A F+++P K SW +I Y G A++L+ M+ G+ +
Sbjct: 288 AKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLA 347
Query: 70 GVLTACSLGGLVEKGKKFFD 89
VL+AC G + GK D
Sbjct: 348 AVLSACGQLGDLASGKMIHD 367
>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G + A ++F L KD +W +LI+G M G + A+ F+ M+ED P
Sbjct: 330 VDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQED-TALIP 388
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
+++IGVL+ACS G VE GK F M+ ++PT HY CMV LL +
Sbjct: 389 DEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSR 438
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 6 LDF--YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+DF Y+ +G ++ A +F+++ W ++I GY + D A+ ++ MR+ G
Sbjct: 44 VDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAP 103
Query: 64 YPVSHIGVLTACSL 77
+ VL ACSL
Sbjct: 104 DHFTFPFVLKACSL 117
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G ++ A K+FD +P + +W +LI G A+ +++ M V
Sbjct: 147 LQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNE 206
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102
++ + VL AC+ + G+ D + P +++
Sbjct: 207 ITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSN 243
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ + IFDR+ +K +W LI GYG+ G AI LF++M+ G
Sbjct: 645 IDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDS 704
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I +LTAC+ GLV +G ++ +MQ+ +KP HYAC+V +L
Sbjct: 705 VTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDML 750
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G+I LA FD + K+ W T+I G+ A+++F M +
Sbjct: 544 VSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDE 603
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111
+S IG L ACS + GK E+ VK T ++ + LI
Sbjct: 604 ISIIGALGACSQVSALRLGK----ELHCFAVKSHLTEHSFVTCSLI 645
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D ++FD + KD SW T++ GY + G + VA++LF M G+
Sbjct: 173 VDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDD 232
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I +L+ CS GL E G+K F M+ V P+ HYAC+V +L
Sbjct: 233 VTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDML 278
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT+ + K+FD++P ++ ASW +LI G+ +L A+++F M+ +G+ +
Sbjct: 72 LRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSW 131
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
V+ +L C+ + GK+ ++ +P
Sbjct: 132 VTLTTILPICARVTALLSGKEIHAQIVKSARRP 164
>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 637
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y ++G + +A +F++L ++ SW +I GYGM G D A+ LF MR E V
Sbjct: 306 VDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPD 365
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+AC+ GG+V++ K+FF M ++KPT H+ C+V +L
Sbjct: 366 NITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVL 412
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y + G +D A +FDR+ V+DS W ++I YG G A++L M +GV
Sbjct: 205 VDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGV 260
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+D Y G + A ++FD +P ++ W LI Y G +VAI L+ M + GVE
Sbjct: 104 VDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVE 160
>gi|302780944|ref|XP_002972246.1| hypothetical protein SELMODRAFT_97289 [Selaginella moellendorffii]
gi|300159713|gb|EFJ26332.1| hypothetical protein SELMODRAFT_97289 [Selaginella moellendorffii]
Length = 279
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAIN-LFEAMREDGVEYY 64
+D Y + G +D A ++FDR+P SW ++I GY GE + A+ LFE M ED +
Sbjct: 82 VDMYAKCGSLDNARRVFDRMPRHTIVSWNSMITGYVQGGEPETALTLLFERMLEDHWQPD 141
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ + +LTAC GLV+KGK+ F M + + P+ HY+C V LL + NQ
Sbjct: 142 GVTFLSLLTACCHAGLVDKGKELFRLMVSDYAIVPSIEHYSCAVDLLGRANQ 193
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91
SW TLI GYG G+ VA+ +F MR++G+E ++ I V+ AC+L E+G +
Sbjct: 8 SWNTLIAGYGQSGDGAVALAMFSRMRDEGLEPDALTFIAVINACALLAAREEGVSIHSQA 67
Query: 92 QARNVKPT 99
++ T
Sbjct: 68 GRHELENT 75
>gi|297800494|ref|XP_002868131.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313967|gb|EFH44390.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 484
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +K+FD+L ++ +W +L+ GYG G++ + FE M+E+G P
Sbjct: 234 VDMYFKCSSFSDGHKVFDQLSTRNVVTWTSLMSGYGYHGKVSEVLKCFEKMKEEGCRPNP 293
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
V+ + VLTAC+ GGLV+KG + F+ M+ ++P HYA MV
Sbjct: 294 VTFLVVLTACNHGGLVDKGWEHFNSMKRDYGIEPEGQHYAAMV 336
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT+ G + A +F+R+ K +W ++I G + G + AI L+ M DG++
Sbjct: 448 IDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNE 507
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ + +LTAC+ GLV+KG FF+EM+ + +V P H AC+V LL K
Sbjct: 508 VTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCK 555
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + ID A FDR+P +D +W T+I GY G ++ LFE M+ +
Sbjct: 347 MEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNE 406
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
V+ +GVL+AC+ G E G++ + ++++ + T + ++ + K AR
Sbjct: 407 VTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVAR 459
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+++G ++ A ++FD +P + SASW ++I Y GE A+ LF+ M +G ++
Sbjct: 250 YSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITI 309
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM-VYLLIKYNQKAR 118
V + C+ G ++ G++ ++ +++ H A M +Y+ + +AR
Sbjct: 310 TTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEAR 360
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+DFY + G +D A F +PVKD LI GY G+++ A LF++M R +
Sbjct: 216 VDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASW- 274
Query: 65 PVSHIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPT 99
+ AC + GG + FD+M P
Sbjct: 275 -----NSMIACYAHGGEFREALTLFDQMLREGASPN 305
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I+ A K+FDR+ +DSAS +I+GY + G ++ LFE M+ G++ V+
Sbjct: 433 YAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTF 492
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+GVL+AC GLV++G+++FD M + ++ P HY CM+ LL
Sbjct: 493 VGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLL 535
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A K+F +P ++ SW +I G+ G+++ A+ LF+ M E V VS
Sbjct: 301 YVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNV----VSW 356
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
++ S G E K F +MQ ++KP +A
Sbjct: 357 NAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFA 392
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I+ A K+F +P +D +W T++ GY G+++ A+ LFE M E + VS
Sbjct: 239 YVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNL----VSW 294
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ G V++ K F M RNV
Sbjct: 295 NTMIAGYVQNGSVKEAFKLFQIMPERNV 322
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++FD++P +D SW +I GY G ++ A+ LF+ + + V +
Sbjct: 205 VDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWN 264
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
G G VE + F++M +N+ T A
Sbjct: 265 TMMAGYAQC----GDVENAVELFEKMPEQNLVSWNTMIA 299
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A ++FD +PVK+ SW +I Y A+ F M++ G++
Sbjct: 107 VSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNH 166
Query: 66 VSHIGVLTACS 76
+ +L AC+
Sbjct: 167 FTFASILPACT 177
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ + FD +P ++ SW +L+ GY M G+ AIN+FE M+ G +
Sbjct: 386 IDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDH 445
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN--VKPTETHYACMVYLL 110
VS VL+AC+ GGL E+G +FD M +RN V+ HY+CMV LL
Sbjct: 446 VSFTCVLSACTQGGLTEEGWFYFDSM-SRNHGVEARMEHYSCMVTLL 491
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + + +F+ + D + L+ G G +D A+ +F+ + G
Sbjct: 247 VVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFK--G 304
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
++ VS ++ +CS G + + F EMQ VKP C++
Sbjct: 305 MDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLL 351
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G D A KIF +L KD +W T+I G + G+ A+N+F M E+ E P
Sbjct: 356 MDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEA-EVAP 414
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDE-MQARNVKPTETHYACMVYLL 110
+++I VL ACS GLVE+G+K F M+ ++PT HY CM+ LL
Sbjct: 415 DQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLL 462
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A +FD++P ++ W ++I + G A+ LF M G
Sbjct: 255 MDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNK 314
Query: 66 VSHIGVLTACS 76
+ + V+ AC+
Sbjct: 315 ATFLSVIRACT 325
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
L+ Y G ++ K+F+ +P + +W +LI G+ + A+ LF+ M +GVE
Sbjct: 147 LNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVE 203
>gi|242087927|ref|XP_002439796.1| hypothetical protein SORBIDRAFT_09g020210 [Sorghum bicolor]
gi|241945081|gb|EES18226.1| hypothetical protein SORBIDRAFT_09g020210 [Sorghum bicolor]
Length = 399
Score = 81.6 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 57/101 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A ++F +P +D SW LILG+G+ G DVA+ F+ M +G+
Sbjct: 187 VDMYVKCGDFAFAERVFAGMPRRDVISWSALILGHGLNGHSDVALRFFDRMEAEGIRPNS 246
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106
V+ +G L+AC+ G+V+K M+ ++P HY+CM
Sbjct: 247 VTFLGALSACAHSGMVDKAYAILKGMKLWGIEPELKHYSCM 287
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A ++FD + +D+ W +++ Y GE D A+ F +M G+E V + +L AC
Sbjct: 98 ARRLFDGMRERDAVLWTSMLSAYAQGGEPDAALRFFGSMVAAGMELDAVVMVSLLLACGQ 157
Query: 78 GGLVEKGK 85
G G+
Sbjct: 158 LGWRRHGR 165
>gi|222623741|gb|EEE57873.1| hypothetical protein OsJ_08529 [Oryza sativa Japonica Group]
Length = 500
Score = 81.6 bits (200), Expect = 6e-14, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G+++LA ++F + + SW ++I+G+ G A+ FEAMR +G +
Sbjct: 259 IDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDA 318
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ GVLTACS GGL ++G +++D M+ + HY C+V LL + Q
Sbjct: 319 VTFTGVLTACSHGGLTDEGLRYYDLMRPNYGIAARMEHYGCVVDLLGRSGQ 369
>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Brachypodium distachyon]
Length = 849
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A FDRL KD+ SW +I GY + G A+ L++ M +G+E
Sbjct: 519 IDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDG 578
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET---HYACMVYLLIKYNQKA 117
+++G+L AC G++E G FF EM RN+ E HYAC++ +L + + A
Sbjct: 579 FTYLGLLMACGHAGMLEDGLCFFQEM--RNLPKIEAKLEHYACVIGMLSRAGRFA 631
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + GR LA +FD + KD SW T+I GY G ++ LF M+ ++P
Sbjct: 416 LSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWP 475
Query: 66 --VSHIGVLTACSLGGLVEKGKKF 87
++ L ACS V GK+
Sbjct: 476 SLLAATSALVACSELPAVRLGKEM 499
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +IFDR+ ++D SW +I+G + G AI LFE M+ +G+E
Sbjct: 443 VDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNY 502
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VLTACS GLV++ K+F+ M + P HYA + LL
Sbjct: 503 VAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLL 548
>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
Length = 773
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ +A +IFD + D +W +I GYGM GE A+ LF M ++
Sbjct: 569 IDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNG 628
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ + +L+A GL+E+G+K F M +++P HYACMV LL K
Sbjct: 629 VTFLAILSALCHSGLLEEGRKVFTRMGKYSLEPNLKHYACMVDLLGK 675
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y R G+ D A KIF +K D +W TLI Y LG + A++L++ M +G+
Sbjct: 467 IGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPN 526
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
+ I V++AC+ +E+G+K
Sbjct: 527 STTLITVISACANLVALERGEKI 549
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I Y++ + A +F LP KD SW +LI Y G + A+ LF+ M E G
Sbjct: 257 VISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESG 316
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
++ + VL+ G V GK F + RN
Sbjct: 317 LQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRN 351
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDLA ++F+++ K+ +SW +I G M G + AI+LF M + E
Sbjct: 296 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNE--- 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL AC+ GGLV+KG F+ M+ V+P HY C+V LL
Sbjct: 353 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLL 398
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G + LA KIF +P +D SW T+I G + G+ A+ F M + G
Sbjct: 529 MDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNE 588
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLV +G+ F +M Q +KP HY CMV LL
Sbjct: 589 VTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLL 634
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R+G I++A +F + +KD +SW +L+ G+ +++ A +F+ M
Sbjct: 396 IDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRN----S 451
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
VS ++T G + G + F EM+A
Sbjct: 452 VSWTAMITGYVQGEVPIPGLELFQEMRA 479
>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 472
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I+ A ++F R KD SW ++I GY G+ A+++F+ M++ V+
Sbjct: 141 LTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 200
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK--PTETHYACMVYLLIKYNQ 115
V+ IGV AC+ GLVE+G+K+FD M R+ K PT+ H +CMV L + Q
Sbjct: 201 VTFIGVFAACTHAGLVEEGEKYFDIM-VRDCKIAPTKEHNSCMVDLYSRAGQ 251
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G+++ A K+F + KD +W ++ GY GE + AI +F + + G++
Sbjct: 39 LDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNE 98
Query: 66 VSHIGVLTAC-SLGGLVEKGKKF 87
+ +L C + + +GK+F
Sbjct: 99 FTFSSILNVCAATNASMGQGKQF 121
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G + A +F + +D SW +I+G M G + A N F M EDG+E +
Sbjct: 303 DMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDI 362
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
S +G+LTAC+ GLV+KG ++FD M Q + P HY C+V LL
Sbjct: 363 SFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLL 407
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYYPVS 67
Y +G +D A +FD + K+ SW T+I GY + AI LF M+ E G+ V+
Sbjct: 203 YCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVT 262
Query: 68 HIGVLTACSLGGLVEKGK 85
+ VL+AC+ G ++ GK
Sbjct: 263 LVSVLSACAHLGALDLGK 280
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y + G +A K+FD + V+D SW TLI GY G +D A +F+ M E +
Sbjct: 169 VDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL 224
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A +IFD + K A+W +I G+ M G D A+ LF M +G
Sbjct: 406 IDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDD 465
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVLTAC GL+ G+++F M Q V P HY CM+ L
Sbjct: 466 ITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLF 511
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G +D A ++FD +PV+D SW +I GY G ++ A+ FE MR V +
Sbjct: 204 YASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTM 263
Query: 69 IGVLTACSLGG 79
+ VL+AC+ G
Sbjct: 264 LSVLSACAQSG 274
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A +FD+ ++D+ S+ LI GY G LD A LF+ + V
Sbjct: 170 INMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDV---- 225
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
VS +++ + G VE+ FF+EM+ V P
Sbjct: 226 VSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPN 259
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G ++ A+ +F+++ K+ SW +I GY + A+ LF M +
Sbjct: 298 LVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSN 357
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
++ V+ + +L AC+ G ++ GK
Sbjct: 358 IDPNDVTFLSILPACANLGALDLGK 382
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y++ G +D A ++F +LP K+ A+W LI G G AI FE MR E+G+
Sbjct: 361 VDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPD 420
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVL+AC GL++ G+++F+ + + + P HY+CMV LL +
Sbjct: 421 DITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEHYSCMVDLLAR 469
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G + A ++FD + KD +W +I GY G AI LF +MR++G ++
Sbjct: 262 MYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKIT 321
Query: 68 HIGVLTACSLGGLVEKGKKF 87
+GVL+AC+ G +E G +
Sbjct: 322 LVGVLSACAAVGALELGTEL 341
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID ++FD++ +D SW T+I+G G AI LF+ M++ +E
Sbjct: 291 IEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSI 350
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+LTAC+ GL+ +G ++F+ M+ N++P HY C+V LL
Sbjct: 351 ITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLL 396
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + +D A+++F+ + +D+ SW TLI G+ LG++ A +FE M++ +
Sbjct: 159 VEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTI---- 214
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
S +++ + G +FF MQ ++P E
Sbjct: 215 FSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G++ A IF+ + K SW ++ GY +G A+ F M+ G+E +S
Sbjct: 193 HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252
Query: 69 IGVLTACSLGGLVEKGK 85
+ VL C+ G +E GK
Sbjct: 253 VSVLPDCAQLGALELGK 269
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A+++F+ + K +SW +I G+ M G D A ++F MR+ G+E
Sbjct: 411 IDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDD 470
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M Q + P HY CM+ LL
Sbjct: 471 ITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLL 516
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A K+FD +PVKD SW +I GY G A+ LF+ M + + +
Sbjct: 210 YASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTM 269
Query: 69 IGVLTACSLGGLVEKGKK 86
+ V++AC+ G +E G++
Sbjct: 270 VTVVSACAQSGSIELGRQ 287
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR++ A K+FDR P +D S+ LI GY G ++ A LF+ + V
Sbjct: 176 ISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDV---- 231
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS +++ + G ++ + F EM N++P E+
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKEMMKTNIRPDES 267
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A +F+ L KD SW TLI GY + A+ LF+ M G
Sbjct: 303 IVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 362
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G ++ G+
Sbjct: 363 ERPNDVTMLSILPACAHLGAIDIGR 387
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G ++ A ++F + + +W T++ G + G+ AINLF+ M +G +
Sbjct: 279 IDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDD 338
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V I VL+AC+ GGLVE+GK+ FD+M Q +KP HY CMV LL
Sbjct: 339 VIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLL 384
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
++ G ++LA+ +F+++P+++ SW ++I GY +G++ A ++F M E V VS
Sbjct: 119 SKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTV----VSWT 174
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ + G ++ + F+ M +NV
Sbjct: 175 AMISGYATNGDLKSAENIFNHMPVKNV 201
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y G + A IF+ +PVK+ SW +I GY E D A+ +F M +G E P
Sbjct: 180 YATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLING-ECRPDQT 238
Query: 67 SHIGVLTACSLGGLVEKGK 85
+ I +L+AC+ G +E GK
Sbjct: 239 TLISILSACAHLGSLEHGK 257
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 6 LDFYTRTG-RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L FY + A ++F+ +P +D SW ++I Y GE+ AI L + M E +
Sbjct: 52 LGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI--- 108
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
V+ V+ S G +E F++M RN
Sbjct: 109 -VTWNSVVCGLSKAGNMELAHSVFEQMPLRN 138
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
Y R G + A IF ++P K SW +I GY G+L A N+F M
Sbjct: 149 YVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHM 196
>gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320
gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana]
gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana]
gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana]
gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+ Y + G + A +IFD+ KD SW ++I GY G AI LFE M + G +
Sbjct: 263 ISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPD 322
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113
++++GVL++C GLV++G+KFF+ M +KP HY+C+V LL ++
Sbjct: 323 AITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKPELNHYSCLVDLLGRF 371
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 42/79 (53%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y +G ++ A K+F+ +P ++ SW +I G+ +D+ + L+ MR+ + +
Sbjct: 164 LYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYT 223
Query: 68 HIGVLTACSLGGLVEKGKK 86
+L+AC+ G + +G+
Sbjct: 224 FTALLSACTGSGALGQGRS 242
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDLA ++F+++ K+ +SW +I G M G + AI+LF M + E
Sbjct: 344 VDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNE--- 400
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL AC+ GGLV+KG F+ M+ V+P HY C+V LL
Sbjct: 401 ITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLL 446
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFD-RLPVKDSASWITLILGYGMLGELDVAINLFEAMRED 59
++ + Y GR+ A +I D + D+ W +I GY GE++ A LFE M +
Sbjct: 174 ILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDR 233
Query: 60 GVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ + I + C G+VE ++FFDEM+ R+
Sbjct: 234 SMISTWNAMISGFSRC---GMVEVAREFFDEMKERD 266
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
++R G +++A + FD + +D SW +I GY G A+ +F M+++ +
Sbjct: 246 FSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVL 305
Query: 69 IGVLTACSLGGLVEKGK 85
VL+AC+ G +++G+
Sbjct: 306 PSVLSACANLGALDQGR 322
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D +++ G + LA +F+ +P K+ +W ++I M G+ A+ LFE M+ +G++
Sbjct: 184 IDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNG 243
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +G+L AC GLVE+G+ F M Q ++P HY CMV LL
Sbjct: 244 VTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLL 289
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G++++A+ IF+ +P KD SW +I GY + A+NLF M+ GV+ ++
Sbjct: 86 YAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITM 145
Query: 69 IGVLTACSLGGLVEKGK 85
+ V++AC+ G +EK +
Sbjct: 146 LSVISACANVGALEKAR 162
>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I +D Y + G I ++K+F +P +D SW T+++GYG G A+ LF+ M + G
Sbjct: 348 LINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSG 407
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + +GVL CS GLV+KG K+F M + N+ P + Y C+V LL
Sbjct: 408 IQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLL 458
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G ++ A ++F + + +W T++ G + G+ AINLF+ M +G +
Sbjct: 343 IDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDD 402
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V I VL+AC+ GGLVE+GK+ FD+M Q +KP HY CMV LL
Sbjct: 403 VIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLL 448
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
++ G ++LA+ +F+++P+++ SW ++I GY +G++ A ++F M E V VS
Sbjct: 183 SKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTV----VSWT 238
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ + G ++ + F+ M +NV
Sbjct: 239 AMISGYATNGDLKSAENIFNHMPVKNV 265
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y G + A IF+ +PVK+ SW +I GY E D A+ +F M +G E P
Sbjct: 244 YATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLING-ECRPDQT 302
Query: 67 SHIGVLTACSLGGLVEKGK 85
+ I +L+AC+ G +E GK
Sbjct: 303 TLISILSACAHLGSLEHGK 321
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 6 LDFYTRTGR-IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L FY + A ++F+ +P +D SW ++I Y GE+ AI L + M E +
Sbjct: 116 LGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI--- 172
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
V+ V+ S G +E F++M RN
Sbjct: 173 -VTWNSVVCGLSKAGNMELAHSVFEQMPLRN 202
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
Y R G + A IF ++P K SW +I GY G+L A N+F M
Sbjct: 213 YVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHM 260
>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I +D Y + G I ++K+F +P +D SW T+++GYG G A+ LF+ M + G
Sbjct: 348 LINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSG 407
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + +GVL CS GLV+KG K+F M + N+ P + Y C+V LL
Sbjct: 408 IQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLL 458
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ G I A +IFD+LP +D+ +W ++I+G + G + AI L+ M+E V+
Sbjct: 371 LGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNN 430
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
++ +G++TAC+ G VE G +FF M++ N+ P H+AC+V L +
Sbjct: 431 ITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCR 478
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G +D +FD + +D +W +I GY G + A+ LFE M+ ++
Sbjct: 270 LEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPND 329
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
V+ + VL+AC+ G VE G++ +++R
Sbjct: 330 VTLVSVLSACAQLGSVETGERIGSYVESR 358
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY + + A IFD + VKD+ ++ LI Y GE+ A LF+ MR+ +
Sbjct: 138 INFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSI---- 193
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
VS +++ + G KG F MQ +P E A ++ + K
Sbjct: 194 VSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAK 240
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R+G + A ++FD++ + SW +I Y G+ +F+ M+++ E ++
Sbjct: 172 YSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITL 231
Query: 69 IGVLTACSLGGLVEKG 84
VL+ C+ G +E G
Sbjct: 232 ATVLSICAKLGDLEMG 247
>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 578
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G + +++IF + +KDS SW TLI YG+ G A+ LF M+ GVE
Sbjct: 373 INMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEPDA 432
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL+AC+ GLV++G++ FD ++ V T HYAC+V LL K
Sbjct: 433 MTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLLGK 480
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D+Y ++G +A ++FD++ VK+ SW L+ G + ++A++ F AM+ +GV
Sbjct: 170 VDWYFKSGDSLMALRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNR 229
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ I +L A + G + GK+
Sbjct: 230 VTLIAILPAFAELGCAKTGKE 250
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+R G + LA F+R VKD W ++I Y + A+ LF MR DG E V+ +
Sbjct: 277 SREG-LQLAKLTFERSNVKDVVMWSSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLL 335
Query: 70 GVLTACS 76
V+TAC+
Sbjct: 336 AVITACT 342
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY ++ + A K+FD +P+KD SW +I GY G +F+ M E G+ P
Sbjct: 68 ISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIVPKP 127
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V++ C G ++ G+
Sbjct: 128 ELVASVVSVCVRLGDMKLGR 147
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G + A ++F L KD +W +LI+G M G + A+ F+ M+ED P
Sbjct: 356 VDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQED-TALIP 414
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
+++IGVL+ACS G VE GK F M+ ++PT HY CMV LL +
Sbjct: 415 DEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSR 464
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F+++P ++ +W ++I Y G+ + A++LF MR G +
Sbjct: 255 VDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDK 314
Query: 66 VSHIGVLTACS-LGGLVE 82
+ + V+ AC+ LG LV
Sbjct: 315 ATFLCVIGACAHLGALVS 332
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 6 LDF--YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+DF Y+ +G ++ A +F+++ W ++I GY + D A+ ++ MR+ G
Sbjct: 44 VDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAP 103
Query: 64 YPVSHIGVLTACSL 77
+ VL ACSL
Sbjct: 104 DHFTFPFVLKACSL 117
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G ++ A K+FD +P + +W +LI G A+ +++ M V
Sbjct: 147 LQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNE 206
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102
++ + VL AC+ + G+ D + P +++
Sbjct: 207 ITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSN 243
>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
Length = 533
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + G ++ A +F+ +P +++ SW LI GYGM G A+ LF M+E+GVE
Sbjct: 202 MDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEP 261
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+ +L+ACS GL+++G+K F EM+ +V + H+AC+V +L
Sbjct: 262 NHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDML 308
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L +T+ G + A +FD + +D SW +++ GY G+ A+ LF+ MR+ + P
Sbjct: 101 LAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTP 160
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
V+ + +++AC+ G G+KF D
Sbjct: 161 VTALIMVSACAYLGFRHLGRKFHD 184
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G I A ++FD +P K+ +W T+I GYG+ G A+ +F M G+ P
Sbjct: 462 IGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTP 521
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS GLV++G + F+ M R +P+ HYAC+V +L
Sbjct: 522 VTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDIL 567
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ I+ A K+FD P K SW +I GY G + AI+LF M+ PV+
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTI 423
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
+L+AC+ G + GK D +++ + + +
Sbjct: 424 TCILSACAQLGALSLGKWVHDLVRSTDFESS 454
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGY 40
+ Y + R++ A K+FDR+P KD+ W T+I GY
Sbjct: 161 VKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY 195
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D +++ G ID A +IFD + KD SW +++ G+ + G A+ F M+ ++
Sbjct: 324 IDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDE 383
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
++ IGVLTACS GLV++GKK F E++A V+ HY CMV LL +
Sbjct: 384 ITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCR 431
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A ++FD+L KD +W LI GY A+ LF + G P
Sbjct: 222 VNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREV-AGGSNMRP 280
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFD 89
V+ + V++AC+ G +E G+ D
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHD 306
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y G + A +F+R+ ++ W ++I GY + A+ L++ M EDG
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
Query: 66 VSHIGVLTACS 76
V+ +++AC+
Sbjct: 181 VTMATLVSACA 191
>gi|195609728|gb|ACG26694.1| pentatricopeptide repeat protein PPR986-12 [Zea mays]
Length = 551
Score = 81.3 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++LA ++FDR+ +D ASW ++L G + +++LF+ M R +G+
Sbjct: 217 VDLYGKCGAVELARQVFDRMSERDLASWNAMVLALANHGRVQDSLDLFDRMTRVEGLVPN 276
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
++ + VL+AC+ GGLV++G+++F M + ++P HY CMV +L +
Sbjct: 277 AITFVAVLSACNHGGLVDEGRRYFAAMVSDHGIRPRIEHYGCMVDILAR 325
Score = 38.5 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY GR A +F R+P + SW T + G+ A++LF M+ D + P +
Sbjct: 108 FYASCGRPGAALAVFRRVPDRSLVSWNTAVDALAGNGDHLAALDLFREMQRDRPDLAPDA 167
Query: 68 HI--GVLTACSLGGLVEKG 84
+ VL AC+ G + G
Sbjct: 168 YTVQSVLGACAATGALSLG 186
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ LD Y R G++D A +F +P K+ SW +I M G + F M D
Sbjct: 384 LLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDA 443
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQKAR 118
++ +G+L+ACS GGL+E G+ +F+ M + NV+P HY CMV LL + A+
Sbjct: 444 FSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMVDLLGRRGHLAK 502
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L F+ G + + + F + ++ SW T+I GY GE+ A LF MR G+
Sbjct: 156 LHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADV 215
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + +L ACS G +E G+
Sbjct: 216 FTLVSLLFACSSEGNLEVGR 235
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + +A++ FD +P+K+ +W +++ G +D + FE M E +
Sbjct: 257 LDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNI---- 312
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS +++ G + + ++ M++ + P E
Sbjct: 313 VSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDE 347
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ G +D F+++P ++ SW +I Y G L ++L+ MR G+ +
Sbjct: 292 AKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLA 351
Query: 70 GVLTACSLGGLVEKGK 85
GVL+AC G + GK
Sbjct: 352 GVLSACGQNGDLASGK 367
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A+++FD K++ +W T+I GYG+ G D A+ LF M G +
Sbjct: 448 IDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSS 507
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ + VL ACS GLV +G + F M + ++P HYACMV +L + Q
Sbjct: 508 VTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQ 558
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R IDLA ++FD K A+W +I GY G ++AI+LF+ M PV+
Sbjct: 350 YSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTI 409
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+L+AC+ G + GK ++++N++
Sbjct: 410 TSILSACAQLGALSFGKSVHQLIKSKNLE 438
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R+ A K+FD++P +D+ W T+I G D ++ +F+ M GV
Sbjct: 145 VDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDS 204
Query: 66 VSHIGVLTA 74
+ VL A
Sbjct: 205 TTVATVLPA 213
>gi|414589059|tpg|DAA39630.1| TPA: hypothetical protein ZEAMMB73_362613 [Zea mays]
Length = 692
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++GR+ +A +FD + D S+ ++I GYGM G+ +++ F+ M + G+
Sbjct: 439 IDMYSKSGRLSVAQNVFDTMDDPDMISFTSMIAGYGMQGKGIISLRFFKQMIDSGIMPDA 498
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
+ + VL+ACS GLV +G++ FD+M ++ +KP HY+CMV L
Sbjct: 499 IIMVTVLSACSHSGLVGEGEELFDKMVKSYGIKPQMEHYSCMVDL 543
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + + A +FD + +D SW ++I GY G+ A+ LF M+ +G E
Sbjct: 201 VSMYAKCWDLAAARTVFDGMEHRDVVSWNSMISGYAASGQWRKAVELFLRMQAEGAEMNS 260
Query: 66 VS 67
V+
Sbjct: 261 VT 262
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y++ GRI A K FD L KD SW +I GY G AI +F+ + G
Sbjct: 562 VVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKG 621
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
+ +S++ VL+ CS GLVE+GK +FD M+ N+ P H++CMV LL
Sbjct: 622 AKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLL 672
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ Y + G + A ++F R+P +D ASW T++ GY G+ A+++F +MR+ G
Sbjct: 99 MNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTG 153
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++ +D A +IF +P +D SW +I G + A+++ M GV ++
Sbjct: 235 YAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTY 294
Query: 69 IGVLTACSLGGLVEKGKKF 87
LTAC+ +E GK+
Sbjct: 295 TSSLTACARLSSLEWGKQL 313
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
+LI Y G L A +F M E + VS G++TA S G + K ++FFD+M R
Sbjct: 432 SLISMYAKCGNLQNAELIFNFMAERDI----VSWTGMITAYSQVGNIAKAREFFDDMSTR 487
Query: 95 NV 96
NV
Sbjct: 488 NV 489
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+I LA ++F+ + KD +W T+I G + G + A LF+ M+E VE
Sbjct: 236 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPND 295
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS G+V++G+K D M + ++P HY C++ LL +
Sbjct: 296 ITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLAR 343
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +FDR+ +D SW T+I GY ++G++D A LF+ M E +
Sbjct: 73 IDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNL---- 128
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
VS +L+ G VE+ F EM R+V + AC
Sbjct: 129 VSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLAC 168
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y G+ID A ++FD +P ++ SW +++ G+ G ++ A LF M V
Sbjct: 104 INGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDV---- 159
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
VS +L + G + FD+M+A VKPTE A +V LL
Sbjct: 160 VSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE---ATVVSLL 201
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L + + G ++ A +F +P +D SW +++ Y G+ + A+ LF+ MR GV+
Sbjct: 135 LSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE 194
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ + +L+AC+ G ++KG
Sbjct: 195 ATVVSLLSACAHLGALDKG 213
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y + A ++F +D SW +I GY GE+ +F+ M
Sbjct: 37 IVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRD 96
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
V +S ++ ++ G +++ K+ FDEM RN+
Sbjct: 97 V----ISWNTIINGYAIVGKIDEAKRLFDEMPERNL 128
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G I+ A IF+R +D SW +++ GY G A+++F M +G+E
Sbjct: 548 VSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDG 607
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN--VKPTETHYACMVYL 109
V+ + V+ C+ GLVE+G+++FD M AR+ + PT HYACMV L
Sbjct: 608 VTFLSVIMGCAHAGLVEEGQRYFDSM-ARDYGITPTMEHYACMVDL 652
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + K+F+ +P ++ +W +L+ GY G L + LF MR +GV
Sbjct: 146 VDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNS 205
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V+ VL+ + G+V+ G++ + A++VK
Sbjct: 206 VTFASVLSVVASQGMVDLGRR----VHAQSVK 233
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y++ G++ A IF + ++ SW +I G G++ +A LF MREDGV
Sbjct: 348 MDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPN 407
Query: 65 PVSHIGVLTA 74
++ +LTA
Sbjct: 408 DFTYSTILTA 417
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ + A IF + KD SW ++ Y G+ D A N+F M G++
Sbjct: 446 LASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNE 505
Query: 66 VSHIGVLTAC-SLGGLVEKGKKF 87
+ V+ AC S V+ G++F
Sbjct: 506 FTISSVIDACASPTAGVDLGRQF 528
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y++ G + A ++F++LP K+ ASW LI G G AI FE MR ++G+
Sbjct: 376 VDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPD 435
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVL+AC GL++ G+++FD + + + P HY+CMV LL +
Sbjct: 436 DITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEHYSCMVDLLAR 484
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G + A ++FD + KD+ +W LI GY G AI+LF +MR+ G ++
Sbjct: 277 MYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKIT 336
Query: 68 HIGVLTACSLGGLVEKGKKF 87
+GVL+AC+ G +E G +
Sbjct: 337 LVGVLSACAAVGALELGTEL 356
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
Y+ GR A ++FD + +D SW ++I Y G D A +F AM +G
Sbjct: 175 MYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGA 228
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +F+ +PV+++ +W ++I G G D AI F+ M + G++
Sbjct: 398 VDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDE 457
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IGVL+AC GLVE G++FF M A+ +++ HY+CM+ LL
Sbjct: 458 ITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLL 503
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + F++ G + A ++FD PV+D SW TLI GY G A+ LF + EDG
Sbjct: 158 VVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDG 217
Query: 61 VEYYP--VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
P V+ IG ++ C+ G +E GK+ + + + V+ T
Sbjct: 218 NAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCT 258
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 17/115 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++LAN +F+R+ + + SW T+I+G+ LG ++ A LF+ M E V +P
Sbjct: 266 MDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDV--FP 323
Query: 66 VSHIGVLTACSLGGLVE--KGKK---FFDEMQARNVKPTETHYACMVYLLIKYNQ 115
+ + + G V+ +GK+ F EMQ V P E MV LL +Q
Sbjct: 324 WNAL-------MAGYVQNKQGKEAIALFHEMQKSKVDPNEI---TMVNLLSACSQ 368
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G ++ A +FD +P +D W L+ GY + AI LF M++ V+ ++
Sbjct: 300 HARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITM 359
Query: 69 IGVLTACSLGGLVEKG 84
+ +L+ACS G +E G
Sbjct: 360 VNLLSACSQLGALEMG 375
>gi|15227389|ref|NP_179312.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|4584344|gb|AAD25139.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330251504|gb|AEC06598.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I++A + FD++ K+ SW +I Y + G D A+ LF+ M++ G
Sbjct: 469 VDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNA 528
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
V+++ L+AC+ GGLV+KG F M + KP+ HY+C+V +L + +
Sbjct: 529 VTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCIVDMLSRAGE 578
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT +D A + D + KD S T+I G G D AI++F MR+
Sbjct: 370 IDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDTP---NA 426
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ I +L ACS+ + K
Sbjct: 427 ITVISLLNACSVSADLRTSK 446
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ +D A ++FD ++ SW +++ G+ D A+ +F M ++ VE
Sbjct: 269 IDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDE 328
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
V+ + +L C KFF++
Sbjct: 329 VTVVSLLRVC----------KFFEQ 343
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R G I+ A ++F ++ + SW ++I+G+ + G D ++ F AM+++G +
Sbjct: 269 IDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDG 328
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYL 109
VS+ G LTACS GLV KG + FD M++ + P HY C+V L
Sbjct: 329 VSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDL 373
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ + R G I+LA ++FD +P +D+ SW LI G G + A+ F M+ GV
Sbjct: 168 LNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADY 227
Query: 66 VSHIGVLTACS-LGGLV 81
VS I VL AC+ LG L
Sbjct: 228 VSIIAVLAACADLGALT 244
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ ++ A K+F L VK+S SW T++ G+ GE+++AI LF+ M
Sbjct: 137 IDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDA---- 192
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+S ++ G E+ + F +MQ V
Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGV 223
>gi|218546775|sp|Q9SII7.2|PP159_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17210
Length = 736
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I++A + FD++ K+ SW +I Y + G D A+ LF+ M++ G
Sbjct: 490 VDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNA 549
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
V+++ L+AC+ GGLV+KG F M + KP+ HY+C+V +L + +
Sbjct: 550 VTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCIVDMLSRAGE 599
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT +D A + D + KD S T+I G G D AI++F MR+
Sbjct: 391 IDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDTP---NA 447
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ I +L ACS+ + K
Sbjct: 448 ITVISLLNACSVSADLRTSK 467
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ +D A ++FD ++ SW +++ G+ D A+ +F M ++ VE
Sbjct: 290 IDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDE 349
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
V+ + +L C KFF++
Sbjct: 350 VTVVSLLRVC----------KFFEQ 364
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ A ++F +P K++ +W +I G G DVAI F+ M E G++
Sbjct: 396 VDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDE 455
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IGVL+AC GLV++G++FF M ++ +++ HY+CMV LL
Sbjct: 456 ITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLL 501
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +D A K+FD +P +D W L+ GY A+ LF M+E VE ++
Sbjct: 298 YAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITM 357
Query: 69 IGVLTACSLGGLVEKG 84
+ +L+ACS G +E G
Sbjct: 358 VNLLSACSQLGALEMG 373
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F+ + K SW T+I+GY G +D A +F+ M E V +
Sbjct: 264 MDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWN 323
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
G + C G ++ + F +MQ V+P + MV LL +Q
Sbjct: 324 ALMTGYVQ-CKRG---KEALRLFHDMQEAMVEPDDI---TMVNLLSACSQ 366
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + F + A K+FD V+D SW TLI GY G A+ +F M DG
Sbjct: 157 VVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDG 216
Query: 61 -VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
V V+ IGV++ + +E G++ +++ V+ T
Sbjct: 217 AVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCT 256
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G I+ A+K F KD+A W ++I Y GE + A+ +FE M +G++
Sbjct: 587 VDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNY 646
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GL++ G FD M ++P HY CMV LL
Sbjct: 647 VTFVGVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYVCMVSLL 691
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
+DFYT+ ID A +FD L VK S +W T+I GY G V++ LF+ M+E V +
Sbjct: 183 IDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDK 242
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
Y +S VL+AC + +E GK+
Sbjct: 243 YVLS--SVLSACLMLKFLEGGKQ 263
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M+ +DFY + ++ L K+FDR+ K+ SW T+I G A++LF M G
Sbjct: 279 MVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMG 338
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKK 86
VL +C +EKG++
Sbjct: 339 WNPDAFGCTSVLNSCGSLVALEKGRQ 364
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ R+ A +F+ + KD W + GY E + ++ L++ ++ ++
Sbjct: 486 IDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNE 545
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ V+TA S + G++F +++
Sbjct: 546 FTFAAVITAASNIASLRHGQQFHNQV 571
>gi|449527473|ref|XP_004170735.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 402
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y R G I A K FD + +KD +W ++I GYG G A+NLF M + V
Sbjct: 168 LNMYVRCGSIASARKCFDLIIIKDVVAWTSMIEGYGAHGLGVDALNLFHQMTSEEVTPNN 227
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +L+ACS GLV +G + F M++R N+KP HY C V LL
Sbjct: 228 VTFLSLLSACSHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLL 273
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +D A K+F ++ + SW ++I G M G A++LF+ M E+G+
Sbjct: 270 IDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDD 329
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ IGVL+ACS GLV+KG+ +F M+ ++ P HY CMV LL +
Sbjct: 330 VAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCR 377
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 16 DLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75
+ A K+FD P D+ +W +I G+ LG A++LF M+ GV ++ + VL+AC
Sbjct: 179 EFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSAC 238
Query: 76 SLGGLVEKGKKFFDEMQARNV 96
+ G +E GK ++ +N+
Sbjct: 239 ADLGALELGKWVESYVEKKNI 259
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D +++ G + LA +F+ +P K+ +W ++I M G+ A+ LFE M+ +G++
Sbjct: 344 IDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNG 403
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +G+L AC GLVE+G+ F M Q ++P HY CMV LL
Sbjct: 404 VTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLL 449
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G++++A+ IF+ +P KD SW +I GY + A+NLF M+ GV+ ++
Sbjct: 246 YAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITM 305
Query: 69 IGVLTACSLGGLVEKGK 85
+ V++AC+ G +EK +
Sbjct: 306 LSVISACANVGALEKAR 322
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GR++ A ++FD +P +D +W ++ Y + A+ LF +M+ V V
Sbjct: 114 YAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVII 173
Query: 69 IGVLTACS 76
VL+ C+
Sbjct: 174 ATVLSTCA 181
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID ++FD++ +D SW T+I+G G AI LF+ M++ +E
Sbjct: 307 IEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSI 366
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+LTAC+ GL+ +G ++F+ M+ N++P HY C+V LL
Sbjct: 367 ITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLL 412
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSA--SWITLILGYGMLGELDVAINLFEAMREDGVEY 63
++ Y + +D A+++F+ + +D+ SW ++ GY +G A+ F M+ G+E
Sbjct: 204 VEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP 263
Query: 64 YPVSHIGVLTACSLGGLVEKGK 85
+S + VL C+ G +E GK
Sbjct: 264 DEISLVSVLPDCAQLGALELGK 285
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A IF+ +P +D +W ++I+GYG+ G D AI F +M GV
Sbjct: 251 IDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNS 310
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L CS GLV++G ++F M + N+KP HY CMV L
Sbjct: 311 ITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLF 356
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A+K+F+ +P +D SW ++I Y G + A+ +++ MR V + +
Sbjct: 153 YAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTL 212
Query: 69 IGVLTACSLGGLVEKG 84
+ +L++C+ G + G
Sbjct: 213 VSLLSSCAHVGALHMG 228
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD++ +D SW ++I YGM G+ A+ LF+ MR+ G
Sbjct: 348 IDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDW 407
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VL ACS GLV++G+ F+ M + P HY CMV LL
Sbjct: 408 IAFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLL 452
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
+ Y + +D A ++ D +P +D SW +++ GY G + A+ L M +
Sbjct: 179 VSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMED 231
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G + A +F + +D SW +I+G M G + A N F M EDG+E +
Sbjct: 334 DMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDI 393
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
S +G+LTAC+ GLV+KG ++FD M Q + P HY C+V LL +
Sbjct: 394 SFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSR 440
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +A K+FD + V+D SW TLI GY G +D A +F+ M E +
Sbjct: 169 VDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL---- 224
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS +++ + G +E+ ++ F+ M RNV
Sbjct: 225 VSWSTMISGYARVGNLEEARQLFENMPMRNV 255
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYYPVS 67
Y R G ++ A ++F+ +P+++ SW +I GY + AI LF M+ E G+ V+
Sbjct: 234 YARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVT 293
Query: 68 HIGVLTACSLGGLVEKGK 85
+ VL+AC+ G ++ GK
Sbjct: 294 LVSVLSACAHLGALDLGK 311
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A IF+ +P +D +W ++I+GYG+ G D AI F +M GV
Sbjct: 269 IDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNS 328
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L CS GLV++G ++F M + N+KP HY CMV L
Sbjct: 329 ITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLF 374
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A+K+F+ +P +D SW ++I Y G + A+ +++ MR V + +
Sbjct: 171 YAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTL 230
Query: 69 IGVLTACSLGGLVEKG 84
+ +L++C+ G + G
Sbjct: 231 VSLLSSCAHVGALHMG 246
>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G I+ A ++F R KD SW ++I GY G+ A+++F+ M++ V+
Sbjct: 537 LTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK--PTETHYACMVYLLIKYNQ 115
V+ IGV AC+ GLVE+G+K+FD M R+ K PT+ H +CMV L + Q
Sbjct: 597 VTFIGVFAACTHAGLVEEGEKYFDIM-VRDCKIAPTKEHNSCMVDLYSRAGQ 647
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G+++ A K+F + KD +W ++ GY GE + AI +F + + G++
Sbjct: 435 LDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNE 494
Query: 66 VSHIGVLTAC-SLGGLVEKGKKF 87
+ +L C + + +GK+F
Sbjct: 495 FTFSSILNVCAATNASMGQGKQF 517
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE--- 62
+D Y + K+FD + ++ +W TLI GY D + LF M+ +G +
Sbjct: 135 VDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNS 194
Query: 63 YYPVSHIGVLTACSLGG 79
+ + +GVL +GG
Sbjct: 195 FTFAAALGVLAEEGVGG 211
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
++ Y + G + A +FD+ VK +W ++I GY G LD+ A+ +F +MR + V
Sbjct: 236 INLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG-LDLEALGMFYSMRLNYVRLS 294
Query: 65 PVSHIGVLTACS 76
S V+ C+
Sbjct: 295 ESSFASVIKLCA 306
>gi|449473751|ref|XP_004153972.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Cucumis sativus]
Length = 591
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y R G I A K FD + +KD +W ++I GYG G A+NLF M + V
Sbjct: 357 LNMYVRCGSIASARKCFDLIIIKDVVAWTSMIEGYGAHGLGVDALNLFHQMTSEEVTPNN 416
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +L+ACS GLV +G + F M++R N+KP HY C V LL
Sbjct: 417 VTFLSLLSACSHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLL 462
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A +FD +P +D SW ++I Y G++ A+++FE MR + +E
Sbjct: 53 MEVYGKCGCMVSARDVFDEMPNRDLVSWTSMISAYVNGGDVFCALDIFEGMRRE-LEPNS 111
Query: 66 VSHIGVLTAC 75
V+ + +L AC
Sbjct: 112 VTVMVMLQAC 121
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D +++ G + LA +F+ +P K+ +W ++I M G+ A+ LFE M+ +G++
Sbjct: 316 IDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNG 375
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +G+L AC GLVE+G+ F M Q ++P HY CMV LL
Sbjct: 376 VTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLL 421
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G++++A+ IF+ +P KD SW +I GY + A+NLF M+ GV+ ++
Sbjct: 246 YAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVQPDEITM 305
Query: 69 IGVL 72
+ +L
Sbjct: 306 LSIL 309
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GR++ A K+FD +P +D +W ++ Y + A+ LF +M+ V V
Sbjct: 114 YAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVII 173
Query: 69 IGVLTACS 76
VL+ C+
Sbjct: 174 ATVLSTCA 181
>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
Length = 796
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+R G ++ A ++FD++ +D+ +W TLI GY GE +A+ L++ M +G E
Sbjct: 466 VNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSE 525
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL ACS GL E+GK+ F +Q+ + P HY+C++ LL +
Sbjct: 526 LTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSR 573
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R +D A KIF RLP +D SW +I + D AI + M+ +GV
Sbjct: 263 LTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNY 322
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113
+ VL AC+ G + G+ D++ K T + +V L Y
Sbjct: 323 YTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSY 370
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDS-ASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L Y + G ++ A ++F+R+ + S +SW +I Y G + AI L+E M VE
Sbjct: 164 LTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPS 220
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ VL+ACS GL+++G+K + +R +
Sbjct: 221 VRTFTSVLSACSNLGLLDQGRKIHALISSRGTE 253
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYY 64
+D YT G +D A +FD++ +D W LI GY G + L+ M+ V
Sbjct: 364 VDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPAT 423
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQA 93
+ + V++AC+ G ++ +++A
Sbjct: 424 KIIYSCVISACASLGAFADARQAHSDIEA 452
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A FD + K+ SW +++ Y G A++L++ M ++ PV +
Sbjct: 68 YGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVY 124
Query: 69 IGVLTACSLGGLVEKGK 85
VL AC+ +E+GK
Sbjct: 125 TTVLGACASIEALEEGK 141
>gi|115457336|ref|NP_001052268.1| Os04g0221300 [Oryza sativa Japonica Group]
gi|113563839|dbj|BAF14182.1| Os04g0221300, partial [Oryza sativa Japonica Group]
Length = 254
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D +++ G + LA +F+ +P K+ +W ++I M G+ A+ LFE M+ +G++
Sbjct: 30 IDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNG 89
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +G+L AC GLVE+G+ F M Q ++P HY CMV LL
Sbjct: 90 VTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLL 135
>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g32430, mitochondrial; Flags: Precursor
gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ID + K+F+ + K+ W ++I Y G+ + +NLF M ++ V
Sbjct: 516 LDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDL 575
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VLTAC+ G+V+KG + F+ M + N++P+ HY+CMV +L
Sbjct: 576 VTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDML 621
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
+ Y+R+G A ++FD + KD SW +L+ G G A+ +F M +GVE
Sbjct: 216 ITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELD 275
Query: 65 PVSHIGVLTAC 75
VS V+T C
Sbjct: 276 HVSFTSVITTC 286
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G ++ +F ++ ++ SW T+I D A+++F MR DGV V+
Sbjct: 321 YSKCGVLEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAVSIFLNMRFDGVYPNEVTF 375
Query: 69 IGVLTACSLGGLVEKGKK 86
+G++ A +++G K
Sbjct: 376 VGLINAVKCNEQIKEGLK 393
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR D A IF+ L D SW T++ G+ + +A+N M+ GV +
Sbjct: 118 MGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDA 174
Query: 66 VSHIGVLTAC 75
++ L+ C
Sbjct: 175 FTYSTALSFC 184
>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
Length = 795
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+R G ++ A ++FD++ +D+ +W TLI GY GE +A+ L++ M +G E
Sbjct: 465 VNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSE 524
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL ACS GL E+GK+ F +Q+ + P HY+C++ LL +
Sbjct: 525 LTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSR 572
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R +D A KIF RLP +D SW +I + D AI + M+ +GV
Sbjct: 262 LTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNY 321
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113
+ VL AC+ G + G+ D++ K T + +V L Y
Sbjct: 322 YTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSY 369
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ++ A ++F+R+ + +SW +I Y G + AI L+E M VE
Sbjct: 164 LTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSV 220
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ VL+ACS GL+++G+K + +R +
Sbjct: 221 RTFTSVLSACSNLGLLDQGRKIHALISSRGTE 252
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYY 64
+D YT G +D A +FD++ +D W LI GY G + L+ M+ V
Sbjct: 363 VDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPAT 422
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQA 93
+ + V++AC+ G ++ +++A
Sbjct: 423 KIIYSCVISACASLGAFADARQAHSDIEA 451
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A FD + K+ SW +++ Y G A++L++ M ++ PV +
Sbjct: 68 YGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVY 124
Query: 69 IGVLTACSLGGLVEKGK 85
VL AC+ +E+GK
Sbjct: 125 TTVLGACASIKALEEGK 141
>gi|297738046|emb|CBI27247.3| unnamed protein product [Vitis vinifera]
Length = 268
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 66/107 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD + K+ ASW LI G G A+++FE M++ GV+
Sbjct: 61 VDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNE 120
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
++ G+L+AC+ GLVE+G+K+F++++ ++P H+ CMV L K
Sbjct: 121 MTFTGILSACAQAGLVEEGRKYFNKIEEYGLEPRIQHFGCMVDLFGK 167
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +D A K+FD + KD +W +I GY G AI LFE M+++GV
Sbjct: 275 LSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDW 334
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
++ + VLTAC GL + G + F+ MQ A N++P HY+CMV LL +
Sbjct: 335 ITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCR 382
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
GR+ A ++FD +P D+ S+ TL+ + G++D A +F M V + ++
Sbjct: 55 GRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNT----MV 110
Query: 73 TACSLGGLVEKGKKFFDEMQARNV 96
+ S G +E+ + F M ARN
Sbjct: 111 SGLSKNGAIEEAEAMFRAMPARNA 134
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYYPVS 67
Y TG + A + F +PV++ SW ++ GY A+ +F+ M ED V+ P +
Sbjct: 176 YMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPST 235
Query: 68 HIGVLTACS 76
VL CS
Sbjct: 236 LSSVLLGCS 244
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE--DGVEYYPVS 67
++ G I+ A +F +P +++ SW ++ G++ A NLF E D + +
Sbjct: 114 SKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILW---- 169
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ G V+K ++F M RN+
Sbjct: 170 -TAMVSGYMDTGNVQKAMEYFRAMPVRNL 197
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ A K+F+ + K+ SW +I G G+ G+ ++ + LFE M GV
Sbjct: 283 VDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSD 342
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ +GVL C+ G V+KG++ FD M + + P HY C+V LL
Sbjct: 343 STFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLL 388
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y+ G+++ ANK+FD + ++ W +I G+ +G+L++ + LF+ M + V +
Sbjct: 150 LEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSW- 208
Query: 66 VSHIGVLTACSLGGLVEKGKKF--FDEMQARNVKPTET 101
++ +C L + G+ F F EM + +P +
Sbjct: 209 ----NLMISC-LAQRKKDGEAFGIFREMLEQGFEPDDA 241
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ + +IF+ L KD+ SW ++I G M G+ A+ LF+AM+ G++
Sbjct: 383 IEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDD 442
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL+ACS GLVE+G+K F M + +++P HY C + LL
Sbjct: 443 ITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLL 488
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + +A +IFD + VK+ W +++ GY + G+LD A NLFE P
Sbjct: 251 LDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERS--------P 302
Query: 66 VSHIGVLTACSLGGLV-----EKGKKFFDEMQARNVKP 98
I + TA + G V E+ F EMQ R VKP
Sbjct: 303 SRDIVLWTA-MINGYVQFNRFEETIALFGEMQIRGVKP 339
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y G ++ ++F+ +P +D+ SW +I GY + A++++ M E +
Sbjct: 150 MDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPN 209
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFD 89
+ + L+AC++ +E GK+ D
Sbjct: 210 EATVVSTLSACAVLRNLELGKEIHD 234
>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Cucumis sativus]
Length = 804
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD + + SW +LI YG+ G++ I LF M E G++
Sbjct: 545 VDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPND 604
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ + VL+ACS G V++G FF+ M+ ++P H+ C+V LL +
Sbjct: 605 VTVMNVLSACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSR 651
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G +DLA IFD++ K +W ++I G G AI+LF+ M E
Sbjct: 444 INMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGE 503
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + V+ ACS G +EKGK
Sbjct: 504 VAFVSVIQACSHLGFLEKGK 523
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A +F+ + + +++W +I Y + G L A+ LF +M++ VE V+
Sbjct: 245 YAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTM 304
Query: 69 IGVLTACSLGGLVEKGKK 86
+L +C+ L+ +GK
Sbjct: 305 RIILRSCTNLSLLREGKS 322
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
L+ Y T + DL KI + + A W TLI Y G L ++LF M++ G
Sbjct: 344 LELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQG 398
>gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 324
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 66/107 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD + K+ ASW LI G G A+++FE M++ GV+
Sbjct: 117 VDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNE 176
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
++ G+L+AC+ GLVE+G+K+F++++ ++P H+ CMV L K
Sbjct: 177 MTFTGILSACAQAGLVEEGRKYFNKIEEYGLEPRIQHFGCMVDLFGK 223
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEYYPVS 67
Y+++G + A +F+++P++D ASW ++ GY GE + LF E + +G+ V+
Sbjct: 16 YSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALFREMVVNEGLRPDKVT 75
Query: 68 HIGVLTAC----SLGGLV 81
VL+ C SLG LV
Sbjct: 76 LGSVLSGCARMGSLGLLV 93
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I++A KIF + +++ +W L+ G M G + A+NLFE M GV+
Sbjct: 345 VDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNE 404
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
++ + +LTAC GLV++G+K+FD M + N+ P HY CM+ L +
Sbjct: 405 ITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCR 452
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G A IFD LP +D SW +I G ++ LF MR G+
Sbjct: 244 LDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDA 303
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ VL+AC+ G ++ G + + R +K
Sbjct: 304 IILTSVLSACASLGTLDFGTWVHEYINQRGIK 335
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G A K+FD + V+D SW +LI G+ G D AI++F M VE +
Sbjct: 150 YGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRM---DVEPSMTTL 206
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR 94
+ VL AC+ G + GK ++ R
Sbjct: 207 VSVLAACARNGDLCTGKGIHGVIERR 232
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A+++F+ + K +SW +I G+ M G D + +LF MR+ G+E
Sbjct: 341 IDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDD 400
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M Q + P HY CM+ LL
Sbjct: 401 ITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLL 446
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I A K+FD +PVKD SW +I GY G A+ LFE M + V ++
Sbjct: 140 YASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTY 199
Query: 69 IGVLTACSLGGLVEKGKK 86
+ VL+AC+ G +E G++
Sbjct: 200 VTVLSACAHSGSIELGRQ 217
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A +F L KD SW TLI GY + A+ LF+ M G
Sbjct: 233 IVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 292
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ G ++ G+
Sbjct: 293 ETPNDVTMLSVLPACAHLGAIDIGR 317
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + R++ A K+FDR +D S+ LI GY G++ A LF+ + V
Sbjct: 106 ISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDV---- 161
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
VS +++ + G ++ + F+EM NV+P E+ Y
Sbjct: 162 VSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTY 199
>gi|326502116|dbj|BAK06550.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 542
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++LA ++FDR+P +D SW IL G + ++ LF+ M R + V
Sbjct: 208 VDLYGKCGAVELARQVFDRMPERDVTSWNVAILTLANHGCVRESVELFDRMTRVENVVPN 267
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL+AC+ GG+VE+G+++FD M ++P HY CMV +L +
Sbjct: 268 AITFVAVLSACNHGGMVEEGRRYFDMMVGEYRIRPRIEHYGCMVDILAR 316
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G I+LA ++FD + ++ SW ++I+G+ + G D A++ F +M+++G+E
Sbjct: 265 IDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNG 324
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ--ARNVKPTETHYACMVYL 109
VS+ LTACS GL+++G K F +++ RN P HY C+V L
Sbjct: 325 VSYTSALTACSHAGLIDEGLKIFADIKRDHRN-SPRIEHYGCLVDL 369
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A +FD++ V++ SW T+I GY G++D A+ LF+ + P
Sbjct: 133 IDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKL--------P 184
Query: 66 VSHIGVLTACSLGGLV-----EKGKKFFDEMQARNVKP 98
V ++ T +GG V E+ + F EMQ V P
Sbjct: 185 VKNVVSWTVV-IGGFVKKECYEEALECFREMQLAGVVP 221
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A K+FD+LPVK+ SW +I G+ + A+ F M+ GV
Sbjct: 164 IDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDF 223
Query: 66 VSHIGVLTACS-LGGL 80
V+ I +++AC+ LG L
Sbjct: 224 VTVIAIISACANLGAL 239
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F+RLP + +W +I G M G+ + N M + G+
Sbjct: 308 VDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSD 367
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V++I +L+ACS GLV++G+ FF++M + +KP HY CMV LL
Sbjct: 368 VTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLL 413
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G + A ++FDR+ + SW +I GY G AI +F M + G + P
Sbjct: 206 VDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMG-DVLP 264
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
V+ + VL A S G++E GK
Sbjct: 265 NRVTLVSVLPAISRLGVLELGK 286
>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
I +D Y + G + A +F + +D+ASW +I+GYGM G + A+ +F M + G+
Sbjct: 308 INALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGL 367
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIKYNQ 115
+ ++ +GVL ACS G + +G KF EM+ ++ V PT HY C++ +L + Q
Sbjct: 368 KPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQ 422
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++ + A ++FD +P +D W +++ GY +G D A+ + M ++GV +
Sbjct: 105 YLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTV 164
Query: 69 IGVLTACSLGGLVEKGK 85
GVL+ + G + G+
Sbjct: 165 SGVLSVFAGRGDFDNGR 181
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + A +IF+ + KD SW +++ + + D + LF+ M DGV+
Sbjct: 203 IDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDL 262
Query: 66 VSHIGVLTACS-LGGLVE 82
V+ +L ACS L LV
Sbjct: 263 VTITTILPACSHLAALVH 280
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + G +D A ++F ++ K+ ASW LI G G+ D AI FE MR EDG++
Sbjct: 373 VDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPD 432
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVL+AC GLV+ GK++F+ + + + P HY+CMV L +
Sbjct: 433 DITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEHYSCMVDPLAR 481
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G I A ++FD + KD +W +I GY G + AI+LF M++ GV ++
Sbjct: 274 MYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKIT 333
Query: 68 HIGVLTACSLGGLVEKGKKF 87
GVL+ACS G +E G +
Sbjct: 334 LAGVLSACSAVGALELGSEL 353
>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g69350, mitochondrial-like
[Cucumis sativus]
Length = 804
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++FD + + SW +LI YG+ G++ I LF M E G++
Sbjct: 545 VDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPND 604
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ + VL+ACS G V++G FF+ M+ ++P H+ C+V LL +
Sbjct: 605 VTVMNVLSACSHAGCVKEGMLFFNSMRDFGIEPKREHFVCIVDLLSR 651
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G +DLA IFD++ K +W ++I G G AI+LF+ M E
Sbjct: 444 INMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGE 503
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + V+ ACS G +EKGK
Sbjct: 504 VAFVSVIQACSHLGFLEKGK 523
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A +F+ + + +++W +I Y + G L A+ LF +M++ VE V+
Sbjct: 245 YAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTM 304
Query: 69 IGVLTACSLGGLVEKGKK 86
+L +C+ L+ +GK
Sbjct: 305 RIILRSCTNLSLLREGKS 322
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
L+ Y T + DL KI + + A W TLI Y G L ++LF M++ G
Sbjct: 344 LELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQG 398
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + ++ K+FD++P K+ +W +I+ YGM G AI+L M GV+
Sbjct: 472 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 531
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I V ACS G+V++G + F M+ V+P+ HYAC+V LL
Sbjct: 532 VTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 577
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G K+FDR+ ++ SW +LI + ++A+ F M ++ VE
Sbjct: 53 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 112
Query: 66 VSHIGVLTACS 76
+ + V+TACS
Sbjct: 113 FTLVSVVTACS 123
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE------- 58
+D Y+R G+ID+A +IF ++ +D +W T+I GY + A+ L M+
Sbjct: 360 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 419
Query: 59 --DGVEYYP--VSHIGVLTACSLGGLVEKGKKF 87
V P ++ + +L +C+ + KGK+
Sbjct: 420 GASRVSLKPNSITLMTILPSCAALSALAKGKEI 452
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + +A +FDRL K+ SW +I GYGM G A+ LFE MR GVE
Sbjct: 754 VDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDT 813
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
S +L AC GL +G KFF+ M+ ++P HY C+V LL
Sbjct: 814 ASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLL 859
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G ++ A ++FD + +D+ SW + I GY G D A++LF M +G E
Sbjct: 240 IALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISS 299
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ G GK
Sbjct: 300 VTVLSVLPACAELGFELVGK 319
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY ++ ID A +FDR+P +D+ SW ++I G G AI LF M G E
Sbjct: 452 ISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDS 511
Query: 66 VSHIGVLTACS 76
+ + VL AC+
Sbjct: 512 TTLLSVLPACA 522
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSAS-WITLILGYGMLGELDVAINLFEAMREDGV---EY 63
Y + G + A ++FD +P K + W ++ GY E + ++ LFE M E G+ E+
Sbjct: 352 MYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEH 411
Query: 64 YPVSHIGVLT--ACSLGGLVEKG 84
+ +T +C+ GLV G
Sbjct: 412 ALSCLLKCITCLSCARDGLVAHG 434
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 9 YTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
Y + G + A +FD +P V D W +L+ Y G+ ++LF M+ GV P
Sbjct: 140 YLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS--PD 197
Query: 67 SH-IGVLTAC--SLGGLVE 82
+H + + C SLG + E
Sbjct: 198 AHAVSCVLKCIASLGSITE 216
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GRI A +IFD + KD SW LI GY G+ AI +F M +GV V+
Sbjct: 501 YAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTF 560
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
+G+L+ACS GL+++G FF M +KP HYACMV LL
Sbjct: 561 VGILSACSHAGLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLL 603
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y R GRI A +FDR+P ++ +W ++ GY L ++ A LF+ M
Sbjct: 242 LNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKN----S 297
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
+S +++ + G +++ K D+M
Sbjct: 298 ISWTTIISGLARAGKLQEAKDLLDKMS 324
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y I+ A K+FD +P+K+S SW T+I G G+L A +L + M + V
Sbjct: 273 LDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKT 332
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
G L + + ++ FD M+ +
Sbjct: 333 ALMHGYLQR----NMADDARRIFDGMEVHDT 359
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ RTG ++ A+ F ++ + SW+TL+ GY G + A +LF+ M E V + V
Sbjct: 214 FVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVML 273
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
G + +E+ K FDEM +N
Sbjct: 274 DGYVHLSP----IEEACKLFDEMPIKN 296
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPV 66
Y + G ++ A +F R+P KD SW T+I GY G++ AI +F M R + V + V
Sbjct: 369 YVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSV 427
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
T++G + A + FD + VKD SW ++ G+ G+L+ A + F + V +S +
Sbjct: 185 TQSGEMVRAVQFFDEM-VKDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNV----ISWV 239
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
+L G + + FD M RNV
Sbjct: 240 TLLNGYCRAGRIADARDLFDRMPERNV 266
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
GR+ A +FDR+PV+D SW ++ Y G+L++A ++ + M D + ++
Sbjct: 94 GRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMPGDKC---TACYNAMI 150
Query: 73 TACSLGGLVEKGKKFFDEMQA 93
+ + G + K EM A
Sbjct: 151 SGYAKNGRFDDAMKLLREMPA 171
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L R GRID A +FD +P +++ SW +I G + A +LF+ M P
Sbjct: 56 LSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLFDRM--------P 107
Query: 66 VS---HIGVLTAC-SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
V V+ +C + GG +E + D M P + AC ++ Y + R
Sbjct: 108 VRDEFSWTVMVSCYARGGDLELARDVLDRM------PGDKCTACYNAMISGYAKNGR 158
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R+G++ A ++FD +P++++ ++ ++ G +D A LF+ M VS
Sbjct: 29 ARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNT----VSWN 84
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARN 95
++ A S G V + FD M R+
Sbjct: 85 AMIAALSDHGRVADARSLFDRMPVRD 110
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + D A +IFD + V D+ W T+I GY G L+ A+ LF+ M + VS
Sbjct: 338 YLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDM----VSW 393
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ + G + K F M RN
Sbjct: 394 NTMIAGYAQDGQMHKAIGIFRRMNRRNT 421
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G +D + +IF R+ +D+A+W +I G G+ A+ LFE M+ +
Sbjct: 320 IEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDG 379
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ IGVL AC GGLV++G++ F M + ++P HY+C+V LL
Sbjct: 380 ITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNLL 425
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEYY 64
LD YT+ G ++ A K+F ++P ++ SW L+ GY + G+LD A LF + ++D + +
Sbjct: 188 LDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILW- 246
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
++ AC G E+ F +MQ + V+P
Sbjct: 247 ----TAMINACVQHGSFEEALTLFRDMQLQRVEP 276
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ YT GR+D A K+FD +P + W ++ Y G A+ L E M G
Sbjct: 88 LEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEMERSGATPDR 147
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
V+ + +TACS G + G++
Sbjct: 148 VTLVTAVTACSRAGDLSLGRRI 169
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++D A +F + KD W +I G + A+ LF M+ VE +
Sbjct: 222 YAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTV 281
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +LT C+ G +++G+ + RN+K
Sbjct: 282 VTLLTCCANIGALDQGEWIHQYAEGRNMK 310
>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
Length = 688
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ID + K+F+ + K+ W ++I Y G+ + +NLF M ++ V
Sbjct: 441 LDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDL 500
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VLTAC+ G+V+KG + F+ M + N++P+ HY+CMV +L
Sbjct: 501 VTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDML 546
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
+ Y+R+G A ++FD + KD SW +L+ G G A+ +F M +GVE
Sbjct: 141 ITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELD 200
Query: 65 PVSHIGVLTAC 75
VS V+T C
Sbjct: 201 HVSFTSVITTC 211
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G ++ +F ++ ++ SW T+I D A+++F MR DGV V+
Sbjct: 246 YSKCGVLEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAVSIFLNMRFDGVYPNEVTF 300
Query: 69 IGVLTACSLGGLVEKGKK 86
+G++ A +++G K
Sbjct: 301 VGLINAVKCNEQIKEGLK 318
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR D A IF+ L D SW T++ G+ + +A+N M+ GV +
Sbjct: 43 MGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGF---DDNQIALNFVVRMKSAGVVFDA 99
Query: 66 VSHIGVLTAC 75
++ L+ C
Sbjct: 100 FTYSTALSFC 109
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G I+ A +F+ LP D SW +L++GY G+ D A++ FE + + G + ++
Sbjct: 397 YSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAF 456
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIKYNQ 115
IGVL+AC+ GLV+KG ++F ++ ++ + T HYAC++ LL + Q
Sbjct: 457 IGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQ 504
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I+ A IFD++ +D SW T+I Y G + LF + +
Sbjct: 293 LDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPND 352
Query: 66 VSHIGVLTACS 76
+ GVL AC+
Sbjct: 353 FTFAGVLNACA 363
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
LD Y + G + A K+FD + +D SW +I GY G + A NLF+ M
Sbjct: 160 LDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKM 210
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + ++ K+FD++P K+ +W +I+ YGM G AI+L M GV+
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 618
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I V ACS G+V++G + F M+ V+P+ HYAC+V LL
Sbjct: 619 VTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 664
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G K+FDR+ ++ SW +LI + ++A+ F M ++ VE
Sbjct: 140 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 199
Query: 66 VSHIGVLTACS 76
+ + V+TACS
Sbjct: 200 FTLVSVVTACS 210
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE------- 58
+D Y+R G+ID+A +IF ++ +D +W T+I GY + A+ L M+
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506
Query: 59 --DGVEYYP--VSHIGVLTACSLGGLVEKGKKF 87
V P ++ + +L +C+ + KGK+
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEI 539
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + ++ K+FD++P K+ +W +I+ YGM G AI+L M GV+
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 618
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I V ACS G+V++G + F M+ V+P+ HYAC+V LL
Sbjct: 619 VTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLL 664
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G K+FDR+ ++ SW +LI + ++A+ F M ++ VE
Sbjct: 140 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSS 199
Query: 66 VSHIGVLTACS 76
+ + V+TACS
Sbjct: 200 FTLVSVVTACS 210
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE------- 58
+D Y+R G+ID+A +IF ++ +D +W T+I GY + A+ L M+
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506
Query: 59 --DGVEYYP--VSHIGVLTACSLGGLVEKGKKF 87
V P ++ + +L +C+ + KGK+
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEI 539
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G + A ++F+++P D SW +LI+GY G+ D+A+ FE++ G + ++
Sbjct: 342 YSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITF 401
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
+GVL+AC+ GLV+ G ++F ++ ++ + T HYAC++ LL +
Sbjct: 402 VGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLAR 446
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED 59
Y GRI+ A K+FD +P +D+ SW +I GY G A++LF M+E+
Sbjct: 139 YANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQEN 189
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ A IFD++ KD SW T+I G +LF + GV
Sbjct: 238 LDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNE 297
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ GVL AC+ + GK+ M P + +V++ K
Sbjct: 298 YTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSK 344
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y + G + A +FD +P KD SW T+I GY +G ++ A LF+ M
Sbjct: 105 IHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEM 155
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D R+GR A I D +P+K D W +L+ G + G +++A +A+ E E
Sbjct: 441 IDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPE-N 499
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNV--KPTET 101
P ++I + + GL + K ++M R + KP ++
Sbjct: 500 PATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKS 538
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A+++F+ + K +SW +I G+ M G + +LF MR++G+E
Sbjct: 343 IDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDD 402
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS G ++ G+ F M Q ++ P HY CM+ LL
Sbjct: 403 ITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLL 448
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y +G I A ++FD +PVKD SW +I GY G A+ LF+ M + V +
Sbjct: 142 YASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201
Query: 69 IGVLTACSLGGLVEKGKK 86
+ VL+AC+ VE G++
Sbjct: 202 VTVLSACAQSRSVELGRQ 219
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G+++ A +F+ L KD SW TLI GY + A+ LF+ M G
Sbjct: 235 IVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSG 294
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G ++ G+
Sbjct: 295 ESPNDVTIVSILPACAHLGAIDIGR 319
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR++ A+K+FDR +D S+ LI GY G + A +F+ + V
Sbjct: 108 ISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDV---- 163
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS +++ + G ++ + F EM NV+P E
Sbjct: 164 VSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198
>gi|242041437|ref|XP_002468113.1| hypothetical protein SORBIDRAFT_01g039790 [Sorghum bicolor]
gi|241921967|gb|EER95111.1| hypothetical protein SORBIDRAFT_01g039790 [Sorghum bicolor]
Length = 459
Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT++G + A ++FDR+ + + +W ++I G G AI LF M DG
Sbjct: 254 LDMYTKSGFLLEARRLFDRMAERSTVTWNSMIFGLANSGHCQEAIGLFNRMLCDGARPDH 313
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
++ VLTACS G+VE GK + +MQ + ++P H ACMV+LL
Sbjct: 314 LTFTAVLTACSYAGMVELGKSLYRDMQEEHGIEPRLEHCACMVHLL 359
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +D A K+F + V+ SW ++I+G M G A+ +F+ M E GV+
Sbjct: 375 IDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDD 434
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ IGVL+ACS GLV+KG +F+ M+ ++ P HY CMV +L +
Sbjct: 435 VAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSR 482
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A K+FD PVKDS +W +I GY G A+ LF M+ GV ++ + VL+AC+
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345
Query: 78 GGLVEKGKKFFDEMQARNV 96
G +E GK ++ +N+
Sbjct: 346 LGALELGKWLESYIERKNI 364
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ++ A +F+R+ KD +W ++++GY M G A+ LF+ M G +
Sbjct: 114 IDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTD 173
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IGVL ACS GLV +G KFF M+ ++P HY CMV LL
Sbjct: 174 ITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLL 219
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ID A +FD L +D+ W +I GY G + + LF M V V+
Sbjct: 16 YAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTV 75
Query: 69 IGVLTACSLGGLVEKGK 85
+ VL+AC G +E G+
Sbjct: 76 LAVLSACGQTGALETGR 92
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I+ AN++F R +D SW ++I GY G ++ +FE MR +E ++
Sbjct: 443 YAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITF 502
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
IGV++AC+ GLV +G+++FD M + ++ PT HY+CMV L
Sbjct: 503 IGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDL 544
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +T ++ ++FD + VK+ SW +L+ GY G + A+ LF M+ +G++ P
Sbjct: 134 VDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNP 193
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ VL + G VEKG
Sbjct: 194 FTFAAVLGGLAADGAVEKG 212
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 9 YTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPV 66
Y++ ID A K+F + V++ SW +I GY G D A+NLF M RE+GVE
Sbjct: 339 YSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEF 398
Query: 67 SHIGVLTACSL-GGLVEKGKKF 87
+ VL AC+ VE+GK+F
Sbjct: 399 TFSSVLNACAAPTASVEQGKQF 420
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I+ AN++F R +D SW ++I GY G ++ +FE MR +E ++
Sbjct: 539 YAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITF 598
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
IGV++AC+ GLV +G+++FD M + ++ PT HY+CMV L
Sbjct: 599 IGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDL 640
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +T ++ ++FD + VK+ SW +L+ GY G + A+ LF M+ +G++ P
Sbjct: 134 VDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNP 193
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ VL + G VEKG
Sbjct: 194 FTFAAVLGGLAADGAVEKG 212
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y++ G + A KIF+ + KD +W ++ GY +G+++ A+ +F + ++GVE
Sbjct: 435 DSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEF 494
Query: 67 SHIGVLTACSL-GGLVEKGKKF 87
+ VL AC+ VE+GK+F
Sbjct: 495 TFSSVLNACAAPTASVEQGKQF 516
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 9 YTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y++ ID A K+F + V++ SW +I GY G D A+NLF MR +GV +
Sbjct: 339 YSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFT 398
Query: 68 HIGVLTA 74
+ +LTA
Sbjct: 399 YSTILTA 405
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+ID A++ F+ +PV++ SW ++I GY G A+ +F M++ G
Sbjct: 803 VDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDH 862
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GLV++G K F M + + P H++CMV LL
Sbjct: 863 VTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLL 908
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + ID A +F +P KD+ SW ++I G + A++ F M+ +G+
Sbjct: 498 VNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSN 557
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
S I L++CS G + G++ E
Sbjct: 558 FSVISTLSSCSSLGWLTLGRQIHGE 582
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 12 TGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY------YP 65
+G ID A+++FD + ++S +W ++I Y G+ A LF M+ +GVE Y
Sbjct: 292 SGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYT 351
Query: 66 VSHIGVLTACSLG--GLV 81
+ + V ACSL GLV
Sbjct: 352 LCSL-VTAACSLADCGLV 368
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G + A K+FD +P K+ SW LI GY D A +LF+ + G+
Sbjct: 182 INIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNH 241
Query: 66 VSHIGVLTACSLGG 79
+ L AC G
Sbjct: 242 FAVGSALRACQQCG 255
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L FY + +++ IF R+ + D SW ++I GY G L A++L M + G +
Sbjct: 701 LAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLD 760
Query: 65 PVSHIGVLTACSLGGLVEKG 84
+ VL+AC+ +E+G
Sbjct: 761 GFTFATVLSACASVATLERG 780
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 65/113 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F + KD +W +I+ Y G AI+LFE M+++G++
Sbjct: 276 IDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDD 335
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
++ +GVL ACS GLV +G ++FD+M+ + P HY C+ LL + Q R
Sbjct: 336 ITFLGVLYACSHSGLVSEGLQYFDDMKDHGIVPGIKHYGCVTDLLARSGQLER 388
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 18 ANKIFDRLPVKDSASWI-TLILGYG-----MLGELDVAINLFEAMREDGVEYYPVSHIGV 71
A ++FDR+P A W TL+ GY E A+ +F M E+GV + + +
Sbjct: 80 ARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSL 139
Query: 72 LTACSLGGLVEKGKK 86
L AC+ E+G++
Sbjct: 140 LKACAAARAGEEGRQ 154
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F+ +P +++ SW LI + G+ + AI F M E G++
Sbjct: 494 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDS 553
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
VS +GVLTACS G VE+G ++F M + P + HYACM+ LL
Sbjct: 554 VSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLL 599
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R+DLA +F+ +P KDS ++ TLI GY G +I+LF MR+ G +
Sbjct: 191 LKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSD 250
Query: 66 VSHIGVLTA 74
+ GVL A
Sbjct: 251 FTFSGVLKA 259
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
R G++ A K++D +P K++ S T+I G+ G++ A +LF+AM + V + +
Sbjct: 60 RRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTI 115
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + A IF LP + + SW LI GY G + LF MR +
Sbjct: 393 VDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQ 452
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL A + + GK+
Sbjct: 453 STFATVLKASASFASLLLGKQL 474
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A +FD +P ++ SW +++ GYGM G A+++F+ M++ G
Sbjct: 556 IDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDD 615
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S + +L ACS G+V++G +FD M++ V + HYAC++ LL +
Sbjct: 616 ISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLAR 663
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F+ + KD SW ++ GY G+ A LF+ MR++ +
Sbjct: 301 IDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDV 360
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
++ V+ + G ++ F +M +P
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNS 395
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 9 YTRTGRIDLANKIF-----DRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
YT++G+ A ++F + +P+ D +W +I GY G A++ F+ M G E
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPL-DVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEP 393
Query: 64 YPVSHIGVLTACSLGGLVEKG 84
V+ I +L+AC+ G + +G
Sbjct: 394 NSVTIISLLSACASLGALSQG 414
>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Brachypodium distachyon]
Length = 802
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + A K+F+R+ KD +W +++ + G A++ FE MR+ G+
Sbjct: 295 LDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQ 354
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+S + +LTACS GGLV++GK +FD ++ N++P HY +V LL
Sbjct: 355 ISFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLL 399
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R G++D+A +FD+L K+ SW LI G+ G+ + A+ +F M+ +G E
Sbjct: 194 LDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATH 253
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + +A + G +E+GK
Sbjct: 254 FTYSSIFSALAGIGALEQGK 273
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y + G + A+K+FD++ KD SW +LI GY AI L M
Sbjct: 93 IHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGM 143
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + + K+F+ L + ASW +++GYG+ G AI LFE M+ G
Sbjct: 637 IDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDE 696
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ +GVLTAC+ GLV +G + D+M+ + PT HYAC++ +L++
Sbjct: 697 LTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVR 744
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + A+ +FD + K SW T++ GY G + A++LF M GV+
Sbjct: 536 LSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCE 595
Query: 66 VSHIGVLTACSL 77
+S + V ACSL
Sbjct: 596 ISMMSVFGACSL 607
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++G + A K+FDR+ +D +W T++ G A+ FE +R+ G++
Sbjct: 304 LGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQ 363
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VLTACS GGLV++GK +FD M+ NV+P HY V LL
Sbjct: 364 ITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLL 408
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R ++D+A +FDRL K+ SW LI G+ + + + F M+ +G
Sbjct: 203 LDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATH 262
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + +A + G +E+G+
Sbjct: 263 FTYSSMFSAFARIGALEQGR 282
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM---- 56
++ + Y + G + A +FD++P +D SW LI GY AI L M
Sbjct: 97 LLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRAR 156
Query: 57 -REDGVEYYP-VSHIGVLTACSLG 78
R +G + + G CS+G
Sbjct: 157 FRPNGFTFTSLLKATGACGGCSIG 180
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Query: 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
I + Y++ G +A ++F+ + D SW +LI+GY G+ D A++ FE + + G
Sbjct: 359 ISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGT 418
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
+ V+++GVL+AC+ GLV+KG ++F ++ ++ + T HYAC++ LL +
Sbjct: 419 KPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLAR 470
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G +D A IFD++ +D SW T+I G + LF + + GV
Sbjct: 262 LDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNE 321
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ GVL AC+ GK+ M P + +V++ K
Sbjct: 322 YTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSK 368
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
LD Y + G + A +FD + +D SW T+I+GY LG L+ A LF+ M
Sbjct: 129 LDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEM 179
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR 57
Y + GR++ A K+FD +P +D+ SW I GY + A+ LF M+
Sbjct: 163 YAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQ 211
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D R+GR A I D +PVK D W +L+ G + G L++A +A+ E E
Sbjct: 465 IDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPE-N 523
Query: 65 PVSHIGVLTACSLGGL---VEKGKKFFDEM 91
P ++I + + GL V +K D M
Sbjct: 524 PATYITLANIYANAGLWSEVANVRKDMDNM 553
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ + ++F+R+ +D+ +W +I G G+ A+ LFE M +
Sbjct: 320 IDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDS 379
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+ IGVL+AC GGLV++G+K F M + ++P HY+C+V LL + Q
Sbjct: 380 VTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQ 430
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
LD Y + G ++ A +F+++P ++ SW TL+ GY G++D A LF E D + +
Sbjct: 188 LDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWT 247
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
+ + V C + L F +MQ ++P
Sbjct: 248 AMINAYVQHGCFIEAL-----SLFRDMQMHQIEP 276
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT GR++ A K+FD +P + W ++ Y G A+ L E M +
Sbjct: 88 MDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDR 147
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ + LTACS G + G+K M
Sbjct: 148 VTLLTALTACSRAGDLSLGRKIHAYM 173
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++D A +F + KD W +I Y G A++LF M+ +E +
Sbjct: 222 YAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTV 281
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +LT C+ G +++G+ + RN+K
Sbjct: 282 VTLLTCCANLGALDQGQLIHQFAEGRNMK 310
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A IF+ +P +D +W ++I+GYG+ G D AI F +M GV
Sbjct: 644 IDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNS 703
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L CS GLV++G ++F M + N+KP HY CMV L
Sbjct: 704 ITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLF 749
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A+K+F+ +P +D SW ++I Y G + A+ +++ MR V + +
Sbjct: 546 YAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTL 605
Query: 69 IGVLTACSLGGLVEKG 84
+ +L++C+ G + G
Sbjct: 606 VSLLSSCAHVGALHMG 621
>gi|255560477|ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539521|gb|EEF41109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 484
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G + A +IFD + K+ SW T+I+ YG+ G ++I LF MRE+G++ +
Sbjct: 156 MYAKCGDLKTARRIFDGMLCKNVVSWNTMIMAYGIHGFGTMSIQLFSEMRENGIKPNEST 215
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ +L++CS+ GLV++G +FF+ M++ N+ H+ CMV LL
Sbjct: 216 FVSLLSSCSITGLVDEGWEFFNSMKSDYNIDHGIEHFGCMVDLL 259
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+D Y + G ++LA ++F ++ K+ SW T+I Y G A+ LF +
Sbjct: 53 VDMYGKCGELELAKRVFSQIDEKNLVSWNTMIAAYVQNGLNMEALELFNCL 103
>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
Length = 598
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +F ++P +D SW ++I+GY + GE + A+ F M + +E
Sbjct: 391 IDMYAKCGSMDRAETVFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEPNS 450
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMV 107
V+ +GVL+AC GLV+KGK +D M + +++P H CMV
Sbjct: 451 VTFLGVLSACDHAGLVDKGKNLYDIMCKYYHIEPKIEHCGCMV 493
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G I+L K+FD L ++ ASW ++I GY G A++L+ ++ ++
Sbjct: 289 INMYSKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWNVIQSRKIKPDE 348
Query: 66 VSHIGVLTACSLGGLVEKG 84
V+ +G+++AC G + +G
Sbjct: 349 VTMLGLISACRSSGDLHQG 367
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y +D A K+F V+D SW T+I GY + A +LF MR VE
Sbjct: 188 IHLYAEFEYMDAAAKLFHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDR 247
Query: 66 VSHIGVLTACS 76
VS + +++AC+
Sbjct: 248 VSLVSLISACT 258
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDL+ ++F+ +P +D SW T+I GYG+ G A LF M G
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDG 542
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ I +L+ACS GLV +GK +F M+ + P HY CMV LL
Sbjct: 543 VTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLL 588
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
LD Y + G + A ++FD +P ++ +W LI G+ + + A LF+AM G+ +
Sbjct: 280 LDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 339
Query: 65 PVSHIGVLTACS 76
P S L AC+
Sbjct: 340 PTSIASALRACA 351
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ID A +FD + VKD+ S+ L+ GY G + A +F+ M+ VE
Sbjct: 382 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 441
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ G+
Sbjct: 442 ATMVSLIPACSHLAALQHGR 461
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R G I+ A ++F ++ + SW ++I+G+ + G D ++ F AM+++G +
Sbjct: 269 IDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDG 328
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYL 109
VS+ G LTACS GLV KG + FD M++ + P HY C+V L
Sbjct: 329 VSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDL 373
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ + R G I+LA ++FD +P +D+ SW LI G G + A+ F M+ GV
Sbjct: 168 LNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADY 227
Query: 66 VSHIGVLTACS-LGGLV 81
VS I VL AC+ LG L
Sbjct: 228 VSIIAVLAACADLGALT 244
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ ++ A K+F L VK+S SW T++ G+ GE+++AI LF+ M
Sbjct: 137 IDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDA---- 192
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+S ++ G E+ + F +MQ V
Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGV 223
>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1736
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRID A++ F+ +P+++ SW ++I GY G + A+ LF M DG
Sbjct: 734 VDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDH 793
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS G VE+G + F M + + P H++CMV LL
Sbjct: 794 VTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLL 839
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y ++G I A +F+ + KDS SW +LI G + A F MR G
Sbjct: 429 VNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSN 488
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ I L++C+ G + G++
Sbjct: 489 FTLISTLSSCASLGWIMLGEQ 509
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L Y + G ++ KIF R+ +D SW ++I GY L A++L M + G
Sbjct: 632 LSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLD 691
Query: 65 PVSHIGVLTACSLGGLVEKG 84
+ +L+AC+ +E+G
Sbjct: 692 SFTFATILSACASVATLERG 711
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G + A K+FD + ++ +W LI GY G+ D A F M G
Sbjct: 113 INIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNH 172
Query: 66 VSHIGVLTACSLGG 79
+ L AC G
Sbjct: 173 YAFGSALRACQESG 186
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY------YPVSHIGV 71
A +FD + +++S SW ++I Y G+ A +LF +M+++G+ + Y + +
Sbjct: 229 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSL-I 287
Query: 72 LTACSLGGLVEKGKKFFDEMQAR 94
TACS V+ G ++M AR
Sbjct: 288 TTACS---SVDFGLCVLEQMLAR 307
>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
gi|219885099|gb|ACL52924.1| unknown [Zea mays]
Length = 530
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++G + A K+FDR+ +D +W T++ G A+ FE +R+ G++
Sbjct: 201 LGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQ 260
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VLTACS GGLV++GK +FD M+ NV+P HY V LL
Sbjct: 261 ITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLL 305
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R ++D+A +FDRL K+ SW LI G+ + + + F M+ +G
Sbjct: 100 LDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATH 159
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + +A + G +E+G+
Sbjct: 160 FTYSSMFSAFARIGALEQGR 179
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-----REDGVEY 63
Y + G + A +FD++P +D SW LI GY AI L M R +G +
Sbjct: 2 YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61
Query: 64 YP-VSHIGVLTACSLG 78
+ G CS+G
Sbjct: 62 TSLLKATGACGGCSIG 77
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+F+R+ D+ SW +I G+ G +D A+ LF M + GVE
Sbjct: 519 VDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNA 578
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS GGLVE+G ++F M+ + P HYAC+V LL
Sbjct: 579 VTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLL 624
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ K+F+R+ +D SW +L+ Y E D AI +F MR +G+ +
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480
Query: 69 IGVLTACSLGGLVEKGKK 86
VL +C+ L+E G++
Sbjct: 481 SSVLVSCANLCLLEYGQQ 498
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ ID A ++FD++ +++ SW LI G G F M+ G+ ++
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174
Query: 69 IGVLTAC 75
G+L C
Sbjct: 175 SGILQIC 181
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+F+R+ D+ SW +I G+ G +D A+ LF M + GVE
Sbjct: 519 VDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNA 578
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS GGLVE+G ++F M+ + P HYAC+V LL
Sbjct: 579 VTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLL 624
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ K+F+R+ +D SW +L+ Y E D AI +F MR +G+ +
Sbjct: 421 YAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTF 480
Query: 69 IGVLTACSLGGLVEKGKK 86
VL +C+ L+E G++
Sbjct: 481 SSVLVSCANLCLLEYGQQ 498
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ ID A ++FD++ +++ SW LI G G F M+ G+ ++
Sbjct: 115 YSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAY 174
Query: 69 IGVLTAC 75
G+L C
Sbjct: 175 SGILQIC 181
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + GR++ + IF+ + +D+ +W ++ GY + AI LF+ M ++GVE
Sbjct: 384 LNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 443
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +L+ACS GLVE+GKK+F+ M + V+P HY+CMV LL
Sbjct: 444 VTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLL 489
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+ Y + G + A ++FD +P +D SW +L+ G G L +N F MR E G +
Sbjct: 181 VSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPN 240
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ + V++AC+ G +++GK
Sbjct: 241 EVTLLSVVSACAXMGALDEGKSL 263
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ ++ Y + G +D A+++F+ +PV+ SW ++++ + G + ++LF M+ G
Sbjct: 278 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 337
Query: 61 VEYYPVSHIGVLTACSLGGL 80
+ + + +L AC+ GL
Sbjct: 338 INPDQATMVALLRACTDTGL 357
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +DLA +FD++ + SW ++I+GYGM G+ D A+ +F M + G
Sbjct: 395 LTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPND 454
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ I VL+AC+ G++ +G +FD M +A ++P HY CMV LL
Sbjct: 455 ATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLL 500
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+D Y + G I A ++F+ +P +D SW ++I GY G++ A +LF M
Sbjct: 232 IDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKM 282
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++A ++F+ +P ++ SW ++ Y + + D + +F+ M + +
Sbjct: 294 IDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPN-E 352
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + VLTAC+ G +++GK
Sbjct: 353 ATLVSVLTACAHLGRLDRGK 372
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
Y G + A +F+++P +D SW +I GY + +++A LF M
Sbjct: 266 YVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWM 313
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+ GRI A +F+ + D +W ++I GY GE+ A LFE M E +
Sbjct: 201 IHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDL---- 256
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
S ++ G + + F++M R++ + CM+
Sbjct: 257 FSWNSMIAGYVGNGDMTAAEDLFNKMPFRDI----VSWNCMI 294
>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 812
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+R+G++ A K+FD L KD ++ ++I+GYG+ G+ + A+ LF MR ++
Sbjct: 473 VEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDH 532
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL ACS GLV +G+ F +M + + P HY+CMV L
Sbjct: 533 VTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDPRVEHYSCMVDLF 578
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G++++A ++FD +P +D SW T+I Y G D A LF MRE G+E +
Sbjct: 238 YGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIW 297
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQA 93
+ C G + K F +M+A
Sbjct: 298 NTIAGGCLHTGNFKGALKLFSQMRA 322
>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
Length = 674
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G I + F+ L KD SW ++L + G D A+++F M + G +
Sbjct: 422 ITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDE 481
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
++ +GVL+ACS GLV+KG+K FD M +A ++P HY+C+V +L + Q
Sbjct: 482 ITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQ 532
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G++ A ++FD++P K+ SW T++LGY G +D A ++F M E +S
Sbjct: 172 YFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNT----ISW 227
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ + G ++ K F EM RN+ T
Sbjct: 228 TAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNT 260
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A K+FD + + SW +LI GY G++ A LF+ M V
Sbjct: 138 IDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNV---- 193
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS ++ + GL+++ + F++M +N
Sbjct: 194 VSWTTMVLGYARNGLIDQARSVFNQMPEKNT 224
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G + A K+FD +P D+ S+ +I Y EL A LF+ M + + V+
Sbjct: 81 RCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTI----VAESA 136
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNV 96
++ + GL++ +K FD M NV
Sbjct: 137 MIDGYAKAGLMDSAQKVFDAMIDTNV 162
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + + A K+F +P + + +I GY G +D A +F+AM + V S
Sbjct: 110 YLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNV----FSW 165
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ G V K + FD+M A+NV
Sbjct: 166 TSLISGYFRDGQVAKACQLFDQMPAKNV 193
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GR D A K+F +P ++ SW T+I G ++ A LF M VS
Sbjct: 234 YVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNA----VSW 289
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ + G + +++FD+M +++
Sbjct: 290 TIMVSGLARNGFTKLAREYFDQMPNKDI 317
>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
Length = 645
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + +A+ +F++L ++ SW +I G+GM G D A LF MR + + P
Sbjct: 314 LDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEA-QVMP 372
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+AC+ GG+V++ K+ FD M ++KPT HY C+V +L
Sbjct: 373 DHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVL 420
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSA-SWITLILGYGMLGELDVAINLFEA------MRE 58
+D Y G + LA ++FD +P + + W LI Y G + AI L+ A M+
Sbjct: 110 VDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKP 169
Query: 59 DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
D Y P VL AC+ + G++ D + N
Sbjct: 170 DNFTYPP-----VLKACAALLDLSAGREVHDRVMRTN 201
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y + G +D A +F+ ++D+A W ++I G G A+ L M +G+
Sbjct: 213 IDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGI 268
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y R G I + +IFD +P +D SW +I YGM G A+NLF+ R G
Sbjct: 637 ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMG 696
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ ++ +L+ACS GL+E+G K+F M+ + P YACMV LL + Q
Sbjct: 697 LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD + + GR+D+A + F+ + KD W ++ GY GE A+ M+ GV+
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ 291
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMV 107
V+ +++ + G E+ K+F EM ++ KP + ++
Sbjct: 292 VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D+Y + +++A + F + D SW ++ GY + G + AI L M+ G+E
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ G++T + G + +FF M + + P T
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTT 500
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y +TG ++ A ++FD++ ++ SW ++ Y LG+ + I LF M +GV
Sbjct: 131 LEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDH 190
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V ACS GK +D M
Sbjct: 191 FVFPKVFKACSELKNYRVGKDVYDYM 216
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+ +++A +F L +D W ++I G A++L M VE
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + L ACS + +GK+
Sbjct: 601 VTMVSALPACSKLAALRQGKE 621
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G I+LA +F+ +P+K+ +W ++I + M G+ ++ LFE M+++G E
Sbjct: 184 IDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNE 243
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +L AC GLV +G+ F M Q ++P HY CMV LL
Sbjct: 244 VTFLSLLYACCHVGLVYEGRLLFSSMVQQYGIEPKHEHYGCMVDLL 289
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R ++++A IFD +P KD SW +I GY + + A++LF M+E G+ V+
Sbjct: 86 YARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEVTM 145
Query: 69 IGVLTACSLGGLVEKGK 85
+ V++AC+ G + K K
Sbjct: 146 LSVISACANLGSLNKAK 162
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +DLA +FD++ + SW ++I+GYGM G+ D A+ +F M + G
Sbjct: 246 LTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPND 305
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ I VL+AC+ G++ +G +FD M +A ++P HY CMV LL
Sbjct: 306 ATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLL 351
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+D Y + G I A ++F+ +P +D SW ++I GY G++ A +LF M
Sbjct: 83 IDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKM 133
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++A ++F+ +P ++ SW ++ Y + + D + +F+ M + +
Sbjct: 145 IDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPN-E 203
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + VLTAC+ G +++GK
Sbjct: 204 ATLVSVLTACAHLGRLDRGK 223
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
Y G + A +F+++P +D SW +I GY + +++A LF M
Sbjct: 117 YVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWM 164
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+ GRI A +F+ + D +W ++I GY GE+ A LFE M E + +
Sbjct: 52 IHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWN 111
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
G + G + + F++M R++ + CM+
Sbjct: 112 SMIAGYVG----NGDMTAAEDLFNKMPFRDI----VSWNCMI 145
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G+++ A ++FD + + SW ++I+G+ G AI FEAMR G
Sbjct: 245 IDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDA 304
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ GVLTACS GL ++G +++ M+A + + HY C+V LL
Sbjct: 305 VTFTGVLTACSHAGLTDEGLRYYKAMRAEHGITARMEHYGCVVDLL 350
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G + A ++FD +P D SW LI G G D AI+ F AM DGVE V+ +
Sbjct: 149 RNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVA 208
Query: 71 VLTACS 76
++AC+
Sbjct: 209 AISACA 214
>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 944
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F+ +P +++ SW LI Y G+ + AI F M + G++
Sbjct: 488 VDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDS 547
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
VS +GVL ACS G VE+G +FF M + P + HYACM+ LL
Sbjct: 548 VSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLL 593
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
R G++ A K++D +P K++ S T+I GY +G+L A +LF+AM + V + +
Sbjct: 56 RRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTI 111
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R+DLA +F+ + KDS ++ TLI GY G AI+LF MR+ G +
Sbjct: 185 LKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSD 244
Query: 66 VSHIGVLTA 74
+ GVL A
Sbjct: 245 FTFSGVLKA 253
>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G I++ K+FD + D SW ++++GY G A+ LF MR GV
Sbjct: 478 VDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTE 537
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ GVL+AC GLV++G ++F+ MQ ++ P HY+CMV L +
Sbjct: 538 ITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCMVDLFAR 585
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YTR G + A+K+FD +P ++ SW T+I GY G + +I LF+ M +
Sbjct: 48 LQMYTRCGSMTDAHKLFDEMPHRNCFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDYSWN 107
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
V G A G +E ++ F+EM RN
Sbjct: 108 VVFSGFAKA----GEMEIARRLFNEMPNRN 133
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y+ +G+I+ A +IF+ +P K SW ++I+G G A++LF M +
Sbjct: 372 LLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLD 431
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFF 88
+ + V++AC+ +E G++ F
Sbjct: 432 LRMNRFNLTSVISACASISSLELGEQIF 459
>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
Length = 781
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R+G + + +IFD++ KD SW T+I+GY + G+ A+ +F+ M+ +G++
Sbjct: 453 LHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNE 512
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ + VLTACS+ GLV++G F+ M Q + P HY CM LL
Sbjct: 513 STFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLL 558
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A +F +P++ +W +I GY + D A + F MR +G++
Sbjct: 251 LDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEV 310
Query: 66 VSHIGVLTACS 76
V+ I +L AC+
Sbjct: 311 VTAINLLAACA 321
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPV 66
FY + G ++ A ++FD +PV+D +W ++ GY G +A+ F+ M + V++ V
Sbjct: 151 FYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSV 210
Query: 67 SHIGVLTACSLGGLVEKGKKF 87
I L AC L +GK+
Sbjct: 211 GIIAALAACCLEFSSMQGKEI 231
>gi|357117671|ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Brachypodium distachyon]
Length = 602
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A ++F+ V+++ +W +I G+ G + AINLF M +G
Sbjct: 382 VDLYAKCGAVDYACRVFEASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVREGARPDY 441
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S IGVL ACS G+VE+G+ +F+ M + P HY C+V LL +
Sbjct: 442 ISFIGVLFACSHNGMVEQGRNYFNSMSKDYGIAPGIEHYNCIVDLLSR 489
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A ++FD + V+++ SW L+ GY E + + LF M ++ + Y
Sbjct: 283 LDMYAKCGMMLEARRVFDEMQVRNAVSWSALLGGYCQNAEYEKVLVLFRQMDKEYDDSYS 342
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL AC+ V+ GK+
Sbjct: 343 LG--TVLRACAGLSSVKPGKEI 362
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A+K FD +D W ++I Y GE A+ + E M +G+E
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNY 656
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +GVL+ACS GLVE G K F+ M ++P HY CMV LL
Sbjct: 657 ITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLL 701
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ID A +FD LP K + +W T+I G +G V++ LF + ED V P
Sbjct: 190 IDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV--VP 247
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
+I VL+ACS+ +E GK+
Sbjct: 248 DGYILSTVLSACSILPFLEGGKQ 270
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ A+K+F+ +P K+ SW TL+ GY A+ LF +M + G++
Sbjct: 291 IDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDM 350
Query: 66 VSHIGVLTACS 76
+ +LT+C+
Sbjct: 351 YACSSILTSCA 361
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILG---YGMLGELDVAINLFEAMREDGVE 62
++ Y+R G + A K+F+++P ++ SW T++ +G+ E V F R+D
Sbjct: 86 INLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPN 145
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
Y +S + ACS GL +G+ ++Q+ VK
Sbjct: 146 EYILS--SFIQACS--GLDGRGRWMVFQLQSFLVKS 177
>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 752
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G +D AN++F+ + D +W I G+ G A+ LFE M G++
Sbjct: 429 ITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNS 488
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
V+ I VLTACS GLVE+GK D M + NV PT HY CM+
Sbjct: 489 VTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMI 531
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE----- 58
P +DFY + + A + F + + SW +I GY + + + A+ F+++R
Sbjct: 325 PLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASI 384
Query: 59 -DGVEYYPV-SHIGVLTACSLGGLV 81
+ Y + VL C++GG V
Sbjct: 385 LNSFTYTSIFQACSVLADCNIGGQV 409
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A ++FD++ VK + L++GY G A+ LF + +GVE+
Sbjct: 226 VNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDS 285
Query: 66 VSHIGVLTACS 76
VL AC+
Sbjct: 286 FVFSVVLKACA 296
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
L Y ++ A+K+FD + ++ S T+I Y G LD A+ LF M G
Sbjct: 125 LQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASG 179
>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
Length = 781
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R+G + + +IFD++ KD SW T+I+GY + G+ A+ +F+ M+ +G++
Sbjct: 453 LHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNE 512
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ + VLTACS+ GLV++G F+ M Q + P HY CM LL
Sbjct: 513 STFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLL 558
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A +F +P++ +W +I GY + D A + F MR +G++
Sbjct: 251 LDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEV 310
Query: 66 VSHIGVLTACS 76
V+ I +L AC+
Sbjct: 311 VTAINLLAACA 321
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPV 66
FY + G ++ A ++FD +PV+D +W T++ GY G +A+ F+ M + V++ V
Sbjct: 151 FYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSV 210
Query: 67 SHIGVLTACSLGGLVEKGKKF 87
I L AC L +GK+
Sbjct: 211 GIIAALAACCLEVSSMQGKEI 231
>gi|449456941|ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 480
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G +++A +FDR+ K+ W +I YGM G D A N+F + E GV+ +
Sbjct: 243 YGNCGHVNIARDVFDRIDDKNVIVWSAIIRCYGMHGFADEAFNMFRRLEEAGVKPDGLIF 302
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+ +L+ACS GLV KG + +++M+A ++ + HYACMV LL
Sbjct: 303 LNLLSACSHAGLVAKGHEIYEKMEAYGLERKDNHYACMVDLL 344
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY++ ++ A K+FD + ++D SW ++I+GY + G+ D AI F AM + + P S
Sbjct: 139 FYSKCQDVETARKVFDDMSLRDIVSWNSMIVGYTLNGKEDEAIMFFHAMLHNQADCTPDS 198
Query: 68 H--IGVLTACS 76
+ +L AC+
Sbjct: 199 ATLVAILPACA 209
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A +FD +P ++ SW +++ GYGM G A+++F+ M++ G
Sbjct: 556 IDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDD 615
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S + +L ACS G+V++G +FD M+ +V + HYAC++ LL +
Sbjct: 616 ISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLAR 663
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+ + KD SW ++ GY G A LFE MR++ +
Sbjct: 301 IDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDV 360
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
++ V+ + G ++ F +M +P
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNS 395
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVK----DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
YT++G A ++F+ + + D +W +I GY G A++ F+ M DG E
Sbjct: 335 YTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPN 394
Query: 65 PVSHIGVLTACSLGGLVEKG 84
V+ I +L+AC+ G + +G
Sbjct: 395 SVTIISLLSACASLGALSQG 414
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDS--ASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y++ A IFD +P ++ +W +I GY G+ + A+ +F M
Sbjct: 449 IDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAV 508
Query: 64 YPVSHI--GVLTACSLGGLVEKGKKF 87
P ++ +L AC+ + GK+
Sbjct: 509 APNAYTISCILMACAHLAALRMGKQI 534
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +FD + +D SW +I GY M G A+ +F+ M+E V+
Sbjct: 281 IDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDK 340
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+AC+ GL+++G+ +F M Q ++P HY CMV+LL
Sbjct: 341 LTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLL 386
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ + ++F P ++ +W T+I+G+ LG+ + A+ LF M E V+
Sbjct: 180 MDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATE 239
Query: 66 VSHIGVLTACSLGGLVEKG 84
V++ L AC+ +E G
Sbjct: 240 VTYSSALRACASLAALEPG 258
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y ++ + A+K+FD +P +++ S++TLI GY AI LF + + V
Sbjct: 80 LNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQ 138
Query: 66 VSHIGVLTACS 76
+ VL AC+
Sbjct: 139 FTFASVLQACA 149
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y R G I + +IFD +P +D SW +I YGM G A+NLF+ R G
Sbjct: 637 ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMG 696
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ ++ +L+ACS GL+E+G K+F M+ + P YACMV LL + Q
Sbjct: 697 LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 752
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD + + GR+D+A + F+ + KD W ++ GY GE A+ M+ GV+
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ 291
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMV 107
V+ +++ + G E+ K+F EM ++ KP + ++
Sbjct: 292 VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D+Y + +++A + F + D SW ++ GY + G + AI L M+ G+E
Sbjct: 405 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDI 464
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ G++T + G + +FF M + + P T
Sbjct: 465 ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTT 500
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y +TG ++ A ++FD++ ++ SW ++ Y LG+ + I LF M +GV
Sbjct: 131 LEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDH 190
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V ACS GK +D M
Sbjct: 191 FVFPKVFKACSELKNYRVGKDVYDYM 216
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+ +++A +F L +D W ++I G A++L M VE
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + L ACS + +GK+
Sbjct: 601 VTMVSALPACSKLAALRQGKE 621
>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
Length = 932
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G I + F+ L KD SW ++L + G D A+++F M + G +
Sbjct: 328 ITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDE 387
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
++ +GVL+ACS GLV+KG+K FD M +A ++P HY+C+V +L + Q
Sbjct: 388 ITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQ 438
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G++ A ++FD++P K+ SW T++LGY G +D A ++F M E +S
Sbjct: 78 YFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNT----ISW 133
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ + G ++ K F EM RN+
Sbjct: 134 TAMMKSYVDNGRTDEALKLFHEMPQRNL 161
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A K+FD + + SW +LI GY G++ A LF+ M V
Sbjct: 44 IDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNV---- 99
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS ++ + GL+++ + F++M +N
Sbjct: 100 VSWTTMVLGYARNGLIDQARSVFNQMPEKNT 130
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + + A K+F +P + + +I GY G +D A +F+AM + V S
Sbjct: 16 YLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNV----FSW 71
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ G V K + FD+M A+NV
Sbjct: 72 TSLISGYFRDGQVAKACQLFDQMPAKNV 99
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GR D A K+F +P ++ SW T+I G ++ A LF M VS
Sbjct: 140 YVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNA----VSW 195
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ + G + +++FD+M +++
Sbjct: 196 TIMVSGLARNGFTKLAREYFDQMPNKDI 223
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y R+G + LA ++FD++ K++ +W ++I+ G + A+ LFE M GV+
Sbjct: 656 ITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPD 715
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYL 109
++++GVL+AC+ G V+KGK+++++MQ + + P +HYACMV L
Sbjct: 716 HITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDL 761
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G A +IFD + +D +W +I+GY G+ D A+ LF +M G E P
Sbjct: 555 LEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPE--P 612
Query: 66 VSHI--GVLTACSLGGLVEKGKKF 87
SH VL+AC+ ++ GK+
Sbjct: 613 NSHTLAAVLSACASLAYLDYGKQI 636
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A +F+R+ V+ +SW ++ Y G +++A+++FE M VE
Sbjct: 389 LYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENM----VERSI 444
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKP-----TETHYACMVYLLIKYNQK 116
VS ++ + GL KFF M A +++P T AC ++K ++
Sbjct: 445 VSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQ 501
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++GR+ A+ +F +P +D+ SW +I+G G A+ F M +G
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQ 347
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL++C+ G+K
Sbjct: 348 FTLTNVLSSCAAMEACGVGRK 368
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F + +D+ASW +LI G M G A++L+ M GV
Sbjct: 321 VDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDA 380
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VLTAC+ GG V +G+K F M R NV+P H +C++ LL +
Sbjct: 381 ITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCR 428
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y TGRID A +F+R PVKD W ++ GY D A+ LF M+ G+
Sbjct: 223 YVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVL 282
Query: 69 IGVLTACSLGGLVEKGK 85
+ +LT C+ G +E+GK
Sbjct: 283 VSLLTGCAQTGALEQGK 299
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+ Y G+I++ +K+FD +P +D SW LI Y G + AI +F+ M +E +++
Sbjct: 88 MGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFD 147
Query: 65 PVSHIGVLTACSLGGLVEKGKKFF 88
+ + L+ACS +E G++ +
Sbjct: 148 EGTIVSTLSACSALKNLEIGERIY 171
>gi|242048238|ref|XP_002461865.1| hypothetical protein SORBIDRAFT_02g009560 [Sorghum bicolor]
gi|241925242|gb|EER98386.1| hypothetical protein SORBIDRAFT_02g009560 [Sorghum bicolor]
Length = 470
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G++++A K F ++ K+ SW +I GYGM G A+++F MR+ G++
Sbjct: 338 VDMYSKCGKVEMAWKAFQKIKGKNILSWTAMIAGYGMHGYGQEALHVFTDMRKSGLKPNY 397
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ I VL ACS GL+ +G+ +++ M+ ++P HY CMV LL
Sbjct: 398 ITFISVLAACSHAGLLNEGRYWYNTMKTEFGIEPGVEHYGCMVDLL 443
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 1 MIEPRLDFYTRTGRIDL--ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR- 57
++ LD Y + G DL A K+FD + +D SW T+I Y G A+ L+ M
Sbjct: 229 VVNTMLDAYAKGGGHDLGAARKLFDMME-RDVVSWNTMIALYAQNGLSTEALGLYRKMLI 287
Query: 58 -EDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91
GV V+ VL AC+ G ++ GK+ +++
Sbjct: 288 VGGGVRCNAVALSAVLLACAHEGAIQTGKRIHNQV 322
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDL+ ++F+ +P +D SW T+I GYG+ G A LF M G
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDG 542
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ I +L+ACS GLV +GK +F M + P HY CMV LL
Sbjct: 543 VTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLL 588
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
LD Y + G + A ++FD +P ++ +W LI G+ + + A LF+AM G+ +
Sbjct: 280 LDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 339
Query: 65 PVSHIGVLTACS 76
P S L AC+
Sbjct: 340 PTSIASALRACA 351
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ID A +FD + VKD+ S+ L+ GY G + A +F+ M+ VE
Sbjct: 382 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 441
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ G+
Sbjct: 442 ATMVSLIPACSHLAALQHGR 461
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ID A+K F +P + SW ++I G+ G A+ LFE MR G++
Sbjct: 420 VSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQ 479
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ +GVL+ACS GL ++ +F+ MQ + N+KP H+AC++ + ++
Sbjct: 480 VTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLR 527
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G ++ A+K+FD LP ++ +W TL+ GY +A+ LF M E G YP
Sbjct: 106 VNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGA--YP 163
Query: 66 VSH-IG-VLTACSLGGLVEKGKK 86
++ +G VL ACS +E GK+
Sbjct: 164 SNYTLGIVLNACSSLQSIEFGKQ 186
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
FY++ R++ A K F + KD SW ++I G+ +++ F M DG++
Sbjct: 208 SFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEY 267
Query: 67 SHIGVLTAC 75
+ VL+AC
Sbjct: 268 TLTSVLSAC 276
>gi|255552816|ref|XP_002517451.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543462|gb|EEF44993.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 428
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + G I++A ++F+ +P + + SW +I GY + G AI+ E M EDG+
Sbjct: 172 VDMYAKCGWINMAVQVFEEMPKRSAFSWAAMIGGYAIHGYAREAIHYLERMHAEDGLRPD 231
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V +GVLTAC+ GL E+G+ D M+AR + P HY+C+V LL +
Sbjct: 232 GVVLLGVLTACTHAGLQEEGRFLLDNMKARYGIVPRHEHYSCVVDLLCR 280
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A+K+FD + ++ SW T+I+ + + G+ + AI LFE ++ + +
Sbjct: 420 IDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQ 479
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
++ +G+L +CS GLV +G+++F EM+ ++P HYACM+ LL K
Sbjct: 480 ITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGK 527
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A ++F +P ++ SW +I Y L + + A+ LF M GV+
Sbjct: 318 VNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPID 377
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ + VL+AC+ G ++ G+ ++ N
Sbjct: 378 ATLVSVLSACAQLGCLDLGRWIYENYIVSN 407
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A ++FD + VKD SW +++ Y G+L+ A LF+ M V
Sbjct: 287 VDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV---- 342
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++ A S E+ F EM A V P +
Sbjct: 343 VSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF------EAMREDGV 61
FY +D A K+FD +P +D SW TL+ GY G D A LF MR + V
Sbjct: 187 FYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAV 246
Query: 62 EYY-PVSHIGVLTACSLGGLVEK 83
VS IG + + G ++ K
Sbjct: 247 TLVAAVSAIGQMGLLAFGIMLHK 269
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID+A +IF+ +P K+ +W I G + G A+ FE + E G
Sbjct: 350 VDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNE 409
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR--NVKPTETHYACMVYLLIK 112
V+ + V TAC GLV++G+K+F+EM + N+ P HY CMV LL +
Sbjct: 410 VTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCR 458
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + + A K+FD +P KD SW ++I G +++LF M+ G E
Sbjct: 249 LDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDG 308
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V VL+AC+ GL++ G+ + + +K
Sbjct: 309 VILTSVLSACASLGLLDCGRWVHEYIDCHRIK 340
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A K+F+ + V+D SW LI GY G + AI+LF M VE + + +L AC
Sbjct: 163 AGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMN---VEPNVGTFVSILGACGK 219
Query: 78 GGLVEKGK 85
G + GK
Sbjct: 220 LGRLNLGK 227
>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
Length = 913
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRID A++ F+ +P+++ SW ++I GY G + A+ LF M DG
Sbjct: 582 VDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDH 641
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS G VE+G + F M + + P H++CMV LL
Sbjct: 642 VTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLL 687
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G + A K+FD + ++ +W LI GY G+ D A F M G
Sbjct: 141 INIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNH 200
Query: 66 VSHIGVLTACSLGG 79
+ L AC G
Sbjct: 201 YAFGSALRACQESG 214
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L Y + G ++ KIF R+ +D SW ++I GY L A++L M + G
Sbjct: 480 LSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLD 539
Query: 65 PVSHIGVLTACSLGGLVEKG 84
+ +L+AC+ +E+G
Sbjct: 540 SFTFATILSACASVATLERG 559
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
A +FD + +++S SW ++I Y G+ A +LF +M+++G+ +
Sbjct: 257 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGF 302
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDL+ ++F+ +P +D SW T+I GYG+ G A LF M G
Sbjct: 368 IDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDG 427
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ I +L+ACS GLV +GK +F M + P HY CMV LL +
Sbjct: 428 VTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 475
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
LD Y + G + A ++FD +P ++ +W LI G+ + + A LF+AM G+ +
Sbjct: 165 LDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 224
Query: 65 PVSHIGVLTACS 76
P S L AC+
Sbjct: 225 PTSIASALRACA 236
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ID A +FD + VKD+ S+ L+ GY G + A +F+ M+ VE
Sbjct: 267 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 326
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ G+
Sbjct: 327 ATMVSLIPACSHLAALQHGR 346
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY + G I+ A + F +P K+ SW +I GY G + A+NLFE M++ G
Sbjct: 659 ITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNH 718
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ +GVL+ACS GLV KG +F+ M + + P HYAC+V L+
Sbjct: 719 VTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLI 764
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
P + Y + G I A K+FD L KDS SW+ +I G+ G + AI+LF M G+
Sbjct: 152 PLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFP 211
Query: 64 YPVSHIGVLTACSLGGLVEKGKKF 87
P VL+ C+ L + G++
Sbjct: 212 TPYVFSSVLSGCTKIKLFDVGEQL 235
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y+R A K+F ++ KD S+ +LI G G D A+ LF M+ D ++ V+
Sbjct: 257 LYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVT 316
Query: 68 HIGVLTACSLGGLVEKGKKF 87
+L+AC+ G + KG++
Sbjct: 317 VASLLSACASNGALCKGEQL 336
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A+ I L D SW LI GY A+ F+ M G++
Sbjct: 457 IDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDN 516
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++AC+ + +G++
Sbjct: 517 IGFSSAISACAGIQALNQGRQ 537
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R GRI A F+++ KDS SW LI G+ G + A+ +F M +E
Sbjct: 558 VSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASF 617
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++A + +++GK+
Sbjct: 618 FTFGSAVSAAANIANIKQGKQ 638
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G +D K+F+ +P + SW +I G+ + ++LF M E+ V
Sbjct: 52 VDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTE 111
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
+S VL ACS G + G ++ +++ AR
Sbjct: 112 ISFASVLRACS-GHRI--GIRYAEQIHAR 137
>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 562
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSA-SWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y++ G +D A ++F++ K S +W T+I G+ + GE A+ +FE + +G++
Sbjct: 252 IDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTMITGFSVHGEAHRALEIFEKLEHNGIKPD 311
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
VS++ LTAC GLVE G F+ M V+P HY C+V LL +
Sbjct: 312 DVSYLAALTACRHTGLVEYGISIFNNMACNGVEPNMKHYGCVVDLLSR 359
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G + A K+FD + V+D ASW LI G A+ L++ M +G+
Sbjct: 150 LDAYSKNGDLISALKLFDEMSVRDVASWNALIAGLVAGNRASEALELYKRMEMEGIRRSE 209
Query: 66 VSHIGVLTACSLGGLVEKGKKFF 88
V+ + L ACS G V++G+K
Sbjct: 210 VTVVAALGACSHLGDVKEGEKIL 232
>gi|225216998|gb|ACN85287.1| EMB2261 putative [Oryza australiensis]
Length = 626
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +F+ V+++ +W +I G+ G + AINLF M +G
Sbjct: 386 VDLYAKCGAVDYACSVFEASTVRNTITWNAMISGFAQNGHGERAINLFNRMVREGPRPDY 445
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
+S IGVL ACS G+VE+G+ +FD M + + P HY CMV LL +
Sbjct: 446 ISFIGVLFACSHTGMVEQGRNYFDSMCKDYGIAPGIEHYNCMVDLLSR 493
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A K+FDR+ V++ S L+ GY GE + I LF M ++ ++Y
Sbjct: 287 LDMYAKCGLMVEARKVFDRMEVRNEVSRCALLGGYCQNGEYEKVIALFREMDKEDGDWYS 346
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL AC+ V+ GK+
Sbjct: 347 LG--TVLRACAGLSSVKPGKEI 366
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A F+ + +++ASW LI G+ + G A+ +F M E+G
Sbjct: 361 IDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNE 420
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ IGVL+AC+ GLVE+G+++F+ M+ + P HY CMV LL
Sbjct: 421 VTMIGVLSACNHCGLVEEGRRWFNAMERFGIAPQVEHYGCMVDLL 465
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+FD + V+ SW +I+GY G++ A LF+ M + + +
Sbjct: 167 VDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFN 226
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
G + G V ++ F+EM+ RNV
Sbjct: 227 AMIDGYVKM----GCVGLARELFNEMRERNV 253
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 14/107 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++F+ + ++ SW +++ GY G+++ A +F+ M E V +
Sbjct: 229 IDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWN 288
Query: 66 VSHIGVLTACSLGGLVEKGK-----KFFDEMQARNVKPTETHYACMV 107
+GG + + + F EMQ +V+P E C++
Sbjct: 289 A---------MIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVL 326
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++LA ++FD +P +D W +I G M G+ A+ +F M + G++
Sbjct: 279 LDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDD 338
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
++ I V TACS G+ +G + D+M + ++P HY C+V LL +
Sbjct: 339 ITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSR 386
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+ G + A +FD +P + SW +I GY +G++D A F+ E +
Sbjct: 147 MAMYSVCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWG 206
Query: 66 VSHIG-VLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
G V +C ++G F +Q +V P E+
Sbjct: 207 AMISGYVQNSC-----FKEGLYLFRLLQLTHVVPDES 238
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRIDL+ ++F+ +P +D SW T+I GYG+ G A LF M G
Sbjct: 368 IDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDG 427
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ I +L+ACS GLV +GK +F M + P HY CMV LL +
Sbjct: 428 VTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 475
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
LD Y + G + A ++FD +P ++ +W LI G+ + + A LF+AM G+ +
Sbjct: 165 LDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLS 224
Query: 65 PVSHIGVLTACS 76
P S L AC+
Sbjct: 225 PTSIASALRACA 236
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ID A +FD + VKD+ S+ L+ GY G + A +F+ M+ VE
Sbjct: 267 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 326
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + ++ ACS ++ G+
Sbjct: 327 ATMVSLIPACSHLAALQHGR 346
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y R G I + +IFD +P +D SW +I YGM G A+NLF+ R G
Sbjct: 394 ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMG 453
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ ++ +L+ACS GL+E+G K+F M+ + P YACMV LL + Q
Sbjct: 454 LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQ 509
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD + + GR+D+A + F+ + KD W ++ GY GE A+N+F M +GV+
Sbjct: 153 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNS 212
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
++ ++AC+ L+ G++
Sbjct: 213 ITIASAVSACTNLSLLRHGRE 233
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y +TG ++ A ++FD++ ++ SW ++ Y LG+ + I LF M +GV
Sbjct: 52 LEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDH 111
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V ACS GK +D M
Sbjct: 112 FVFPKVFKACSELKNYRVGKDVYDYM 137
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+F+ R + +A +F L +D W ++I G A++L M VE
Sbjct: 301 LEFFQR---MHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 357
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + L ACS + +GK+
Sbjct: 358 VTMVSALPACSKLAALRQGKE 378
>gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
Length = 524
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+ Y + G ++ A IF+ + VKD+ SW ++I GY G AI+LF+AMR + VE
Sbjct: 273 ISMYCKCGALNFALYIFEAMEVKDTVSWNSMIAGYAQHGLSLRAIDLFKAMRKQKQVEAD 332
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +GVL++C G VE+G+ +F+ M +KP HY+C++ LL
Sbjct: 333 AITFLGVLSSCRHAGFVEEGRHYFNLMVELGLKPELDHYSCVIDLL 378
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 46/82 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A ++FD +PV++ SW +I G+ + ++++ + LF+ M+ ++
Sbjct: 172 VSLYGKCGELSNAYRVFDEMPVRNVVSWTAIIAGFAVEWQVNMCLELFQEMKRMALQPNE 231
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ + +LTAC+ G + G+
Sbjct: 232 FTFVTILTACTGSGALGVGRSL 253
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y R+G + LA ++FD++ K++ +W ++I+ G + AI LFE M GV+
Sbjct: 472 ITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPD 531
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V++IGV +AC+ G ++KGK+++++M + P +HYACMV LL +
Sbjct: 532 RVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLAR 580
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A +F+R+ V+ +SW ++ Y G +D+A+++FE M E +
Sbjct: 205 LYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI---- 260
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTE 100
VS ++ + GL + KFF M A +++P E
Sbjct: 261 VSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDE 296
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G A ++FD + +D +W +I+GY G+ D A+ LF +M G E P
Sbjct: 371 LEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPE--P 428
Query: 66 VSHI--GVLTACSLGGLVEKGKKF 87
SH VL+AC+ + GK+
Sbjct: 429 NSHTLAAVLSACASLAYLGYGKQI 452
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++GR+ A +F ++P +D+ SW +++G G A+ F M +G+
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163
Query: 66 VSHIGVLTACS 76
VL++C+
Sbjct: 164 FMLTNVLSSCA 174
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRI + FD +P K+ W +I GY M G+ A+ +F+ M+ G +
Sbjct: 428 IDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDI 487
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S VL+ACS GL E+G +F+ M ++ ++ HYACMV LL +
Sbjct: 488 ISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSR 535
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++FD++ D S I G G+++ ++ LF +++ G+E
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS ++ CS G + + F EMQ VKP C++
Sbjct: 352 VSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLL 393
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + +I A+++FDR+ D SW L+ Y G +D A LF M + GV+
Sbjct: 156 VHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNL 215
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+S G++ + GL + F +M R +P T
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGT 251
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ID A+K F +P + SW ++I G+ G A+ LFE MR G++
Sbjct: 414 VSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQ 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
V+ +GVL+ACS GL ++ +F+ MQ + N+KP H+AC++
Sbjct: 474 VTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLI 516
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G ++ A+K+FD LP ++ +W TL+ GY +A+ LF M E G YP
Sbjct: 100 VNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGA--YP 157
Query: 66 VSH-IG-VLTACSLGGLVEKGKK 86
++ +G VL ACS +E GK+
Sbjct: 158 SNYTLGIVLNACSSLQSIEFGKQ 180
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
FY++ R++ A K F + KD SW ++I G+ +++ F M DG++
Sbjct: 202 SFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEY 261
Query: 67 SHIGVLTACSL 77
+ VL+AC +
Sbjct: 262 TLTSVLSACCV 272
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A+K+FD + ++ SW T+I+ + + G+ + AI LFE ++ + +
Sbjct: 420 IDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQ 479
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
++ +G+L +CS GLV +G+++F EM+ ++P HYACM+ LL K
Sbjct: 480 ITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGK 527
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A ++F +P ++ SW +I Y L + + A+ LF M GV+
Sbjct: 318 VNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPID 377
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ + VL+AC+ G ++ G+ ++ N
Sbjct: 378 ATLVSVLSACAQLGCLDLGRWIYENYIVSN 407
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF------EAMREDGV 61
FY +D A K+FD +P +D SW TL+ GY G D A LF MR + V
Sbjct: 187 FYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAV 246
Query: 62 EYY-PVSHIGVLTACSLGGLVEK 83
VS IG + + G ++ K
Sbjct: 247 TLVAAVSAIGQMGLLAFGIMLHK 269
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A ++FD + VKD SW +++ Y G+L+ A LF+ M V
Sbjct: 287 VDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNV---- 342
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++ A S E+ F EM A V P +
Sbjct: 343 VSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R GR+D A ++FD++ K+ SW +I G M G AI F M+++GVE
Sbjct: 272 ISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGD 331
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ VL+ACS GLV++G FFD M Q + P HY C+V LL
Sbjct: 332 HTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLL 377
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y+ G+ + A K+FD +P KD +W LI A+ LFE M+
Sbjct: 164 LLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPT 223
Query: 61 VEYYP--VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
P V+ + +L AC+ +E G++ +Q
Sbjct: 224 YLCQPDKVTCLLLLQACADLNALEFGERIHGYIQ 257
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F +PV++S SW LI Y G+ A+ FE M G++
Sbjct: 484 VDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNS 543
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
VS + +L ACS GLVE+G ++F+ M Q ++P HYA MV +L +
Sbjct: 544 VSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCR 591
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 5 RLDFYTRT----GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
R +F +T G + A K+FD +P K+ S T+I+GY G L A +LF++M +
Sbjct: 44 RFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRS 103
Query: 61 V 61
V
Sbjct: 104 V 104
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y +T + LA +F + KD+ ++ L+ GY G AINLF M++ G
Sbjct: 181 LDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSE 240
Query: 66 VSHIGVLTA 74
+ VLTA
Sbjct: 241 FTFAAVLTA 249
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + AN+IF L + S W LI GY G + + LF M +
Sbjct: 383 VDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADS 442
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ +L AC+ + GK+
Sbjct: 443 ATYASILRACANLASLTLGKQL 464
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A K+FD++ D SW +I GY G ++ A+ LF M G++
Sbjct: 515 IDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANA 574
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ + VL ACS GG+VE+G +F +M+ V P HYAC++ LL
Sbjct: 575 VTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLL 620
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y++ G ++ K+FDR+ +D SW TL+ Y + A+ F MRE+G
Sbjct: 415 DAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQF 474
Query: 67 SHIGVLTACSLGGLVEKGKK 86
+ VL +C+ +E G++
Sbjct: 475 TFSSVLISCASLCFLEYGRQ 494
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR DLA KIF L K+ ++W LI G + + I++FE M+ +
Sbjct: 366 IDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDD 425
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + VLTAC+ GLV++G+++F M A V+P HY CMV LL
Sbjct: 426 ITFVSVLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCMVDLL 471
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G + LA K+FD +P+++ SW ++ GY M GE+DVA LF+ M E V VS
Sbjct: 234 FGRHGLLPLARKMFDEMPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDV----VSW 289
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTE 100
+++ + G + + F MQ+ +++P E
Sbjct: 290 TCMISGYAQAGRYAQTLELFRTMQSHGDIRPNE 322
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I A ++FD +P ++ SW ++ Y GELDVA +F+ M G ++
Sbjct: 170 YAKCGEIGNARRVFDEMPHRNGVSWSVMVGAYAAAGELDVAREMFDRMPAIGRNI--ITW 227
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++T GL+ +K FDEM RN+
Sbjct: 228 NLMVTGFGRHGLLPLARKMFDEMPIRNI 255
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A KIF +L KD +W T+I G + G+ A+N+F M E+ E P
Sbjct: 356 MDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEA-EVAP 414
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+++I VL ACS GLVE+G+K F M + ++PT HY CM+ LL
Sbjct: 415 DQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLL 462
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A +FD++P ++ W ++I Y G A+ LF M G
Sbjct: 255 MDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNK 314
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ + V++AC+ G G+
Sbjct: 315 ATFLSVISACTHMGFRSTGRSL 336
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y G ++ K+F+ +P + +W +LI G+ + A+ LF+ M +GVE
Sbjct: 147 LNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNE 206
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ L A + + GK D ++ P +T+ +C +L
Sbjct: 207 ITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTN-SCFNVIL 250
>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06140, mitochondrial; Flags: Precursor
gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
from Arabidopsis thaliana gb|AC008153 and contains
multiple PPR PF|01535 repeats [Arabidopsis thaliana]
gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 558
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G I +A +FD +P ++ SW ++I +G+ G + A++ F M+ V
Sbjct: 354 IDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNS 413
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +L+ACS G V++G K F+ M + V P E HYACMV LL
Sbjct: 414 VTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLL 459
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 2 IEPRL-DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+ P L + Y + G ++ A K+FD +PV++S W L+ GY + LF MR+ G
Sbjct: 146 VAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTG 205
Query: 61 VEYYPVSHIGVLTAC 75
+ ++ I ++ AC
Sbjct: 206 LALDALTLICLVKAC 220
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +D A K+F+ ++ W TLI G+ A +LF M + +
Sbjct: 253 IDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQ 312
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +L +CS G + GK
Sbjct: 313 CTLAAILVSCSSLGSLRHGKS 333
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRI + FD +P K+ W +I GY M G+ A+ +F+ M+ G +
Sbjct: 428 IDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDI 487
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S VL+ACS GL E+G +F+ M ++ ++ HYACMV LL +
Sbjct: 488 ISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSR 535
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++FD++ D S I G G+++ ++ LF +++ G+E
Sbjct: 292 IDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNV 351
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS ++ CS G + + F EMQ VKP C++
Sbjct: 352 VSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLL 393
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + +I A+++FDR+ D SW L+ Y G +D A LF M + GV+
Sbjct: 156 VHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNL 215
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+S G++ + GL + F +M R +P T
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGT 251
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ID AN F+ + KD SW T++ GY G A+ +FE+M+ GV+
Sbjct: 436 LAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDE 495
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS GL+++G ++F M + V PT HY CM+ LL
Sbjct: 496 ITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLL 541
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R ++ A +FD++PV+D+ SW T+I GY G L A LF+ P
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDES--------PTRD 265
Query: 69 IGVLTACSLG----GLVEKGKKFFDEMQARNVKPTETHYACMV 107
+ TA G G++++ K FFDEM +N E Y M+
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN----EVSYNAMI 304
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I A K FD +P +D SW +I GY G + A+N+F +++DG +
Sbjct: 338 YGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATF 397
Query: 69 IGVLTACSLGGLVEKGKK 86
L+ C+ +E GK+
Sbjct: 398 GCALSTCADIAALELGKQ 415
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y +T ++D+A ++F+ +P ++ +SW T+I GYG +G++ A F+ M + VS
Sbjct: 307 YVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC----VSW 362
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
++ + G E+ F E++ + C
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +D A FD +P K+ S+ +I GY ++D+A LFE+M + +
Sbjct: 276 YVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNT-- 333
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
++T G + + +KFFD M R+
Sbjct: 334 --MITGYGQIGDIAQARKFFDMMPQRD 358
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R R+ A ++FD +P KD SW +L+ GY G +D A +F+ M E
Sbjct: 118 LTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKN----S 173
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+S G+L A G +E+ F+
Sbjct: 174 ISWNGLLAAYVHNGRIEEACLLFE 197
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +D A ++FD +P K+S SW L+ Y G ++ A LFE+ + +
Sbjct: 149 LSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDL---- 204
Query: 66 VSHIGVLTACSLGGLVEKGK-----KFFDEMQARNV 96
+ C +GG V K K FD+M R+
Sbjct: 205 -----ISWNCLMGGFVRKKKLGDARWLFDKMPVRDA 235
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G D A +F+ +P + S S+ +I GY + ++A NLF+ M E + + V
Sbjct: 59 HMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVML 118
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
G + C LG ++ FD M ++V
Sbjct: 119 TGYVRNCRLG----DARRLFDLMPEKDV 142
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ID AN F+ + KD SW T++ GY G A+ +FE+M+ GV+
Sbjct: 436 LAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDE 495
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS GL+++G ++F M + V PT HY CM+ LL
Sbjct: 496 ITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLL 541
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R ++ A +FD++PV+D+ SW T+I GY G L A LF+ P
Sbjct: 214 FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDES--------PTRD 265
Query: 69 IGVLTACSLG----GLVEKGKKFFDEMQARNVKPTETHYACMV 107
+ TA G G++++ K FFDEM +N E Y M+
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN----EVSYNAMI 304
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I A K FD +P +D SW +I GY G + A+N+F +++DG +
Sbjct: 338 YGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATF 397
Query: 69 IGVLTACSLGGLVEKGKK 86
L+ C+ +E GK+
Sbjct: 398 GCALSTCADIAALELGKQ 415
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y +T ++D+A ++F+ +P ++ +SW T+I GYG +G++ A F+ M + VS
Sbjct: 307 YVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC----VSW 362
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
++ + G E+ F E++ + C
Sbjct: 363 AAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +D A FD +P K+ S+ +I GY ++D+A LFE+M + +
Sbjct: 276 YVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNT-- 333
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
++T G + + +KFFD M R+
Sbjct: 334 --MITGYGQIGDIAQARKFFDMMPQRD 358
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y R R+ A ++FD +P KD SW +L+ GY G +D A +F+ M E
Sbjct: 118 LTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKN----S 173
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+S G+L A G +E+ F+
Sbjct: 174 ISWNGLLAAYVHNGRIEEACLLFE 197
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
L Y + G +D A ++FD +P K+S SW L+ Y G ++ A LFE+ + D + +
Sbjct: 149 LSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISW- 207
Query: 65 PVSHIGVLTACSLGGLVEKGK-----KFFDEMQARNV 96
C +GG V K K FD+M R+
Sbjct: 208 ---------NCLMGGFVRKKKLGDARWLFDKMPVRDA 235
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G D A +F+ +P + S S+ +I GY + ++A NLF+ M E + + V
Sbjct: 59 HMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVML 118
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
G + C LG ++ FD M ++V
Sbjct: 119 TGYVRNCRLG----DARRLFDLMPEKDV 142
>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A K F +P + +W ++I GY G AI LFE M G
Sbjct: 433 VNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNE 492
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS GLVE+ +++FD M+ +++P HY CMV + ++
Sbjct: 493 ITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVR 540
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R A ++FD +P K+ +W LI G+ + E +A+ +F M E G YP
Sbjct: 118 VNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELG--RYP 175
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
+ G+L+ACS ++ G++
Sbjct: 176 SHYTLGGMLSACSAARRIDLGQQ 198
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR+D A +F R+ +D +W +I G G A+ F M+ DG +
Sbjct: 412 LDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTS 471
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
V++I VLTACS L+++G+ F+EM++ + P HY CM+ LL +
Sbjct: 472 VTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLAR 519
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FD++ +D ++ ++I GY G L A+ LF MR G+
Sbjct: 311 IDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADN 370
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +LTAC+ G + G+ ++ R V+
Sbjct: 371 FTVVSLLTACASLGALPHGRALHASIEQRIVE 402
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G +D A ++ + P ++ SW +LI GY G A+ F M DGV V+ IG
Sbjct: 183 RWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIG 242
Query: 71 VLTACS 76
L+ACS
Sbjct: 243 ALSACS 248
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A IFDR+ V++ +W +I YG G+ + A+ LF M G+
Sbjct: 294 IDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNR 353
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +L ACS GL+E+G++FF M V P HY CMV LL
Sbjct: 354 ITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLL 399
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAIN---LFEAMREDGVE 62
+D Y R ++ A++IF ++ +D A+W +I G L E V + F+ MR G+
Sbjct: 193 VDMYARCKVVEDAHQIFVKMWKRDLATWTVMI---GALAESGVPVESLVFFDRMRNQGIV 249
Query: 63 YYPVSHIGVLTACSLGGLVEKGK 85
V+ + V+ AC+ G + K K
Sbjct: 250 PDKVALVTVVYACAKLGAMNKAK 272
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ + ++F +PVKD +W ++I+G G A++LF M +G++
Sbjct: 245 IDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNE 304
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ IGVL +C+ GLV GKK+F M V P HY CMV LL
Sbjct: 305 VTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLL 350
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + A ++FD + +D SW T+I GY + GE+D+A +F M D + +
Sbjct: 113 LAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGM--DDRDAFS 170
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
S +++A + G + + + EM+A V P T
Sbjct: 171 WS--SMMSAYTKGRRSKDALELWREMRAACVNPDCT 204
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
++ Y + GR DLA FD P +D ++ Y GE+ A +F+ MRE D V +
Sbjct: 82 VEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWN 141
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ H ++ G V+ ++ F+ M R+
Sbjct: 142 TMIH-----GYAVNGEVDLAREVFNGMDDRDA 168
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +FD L D SW +I GY + G A+ FE+M E +
Sbjct: 490 IDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDK 549
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +G+L+ACS GL+++G+ +F M + +++P HY CMV+LL
Sbjct: 550 VTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLL 595
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ + ++F P SW T+I+GY G + A+ LF+ M E V+
Sbjct: 389 MDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTE 448
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V++ VL AC+ +E G +
Sbjct: 449 VTYSSVLRACAGIAALEPGSQ 469
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+FY + + A K+FD +P +++ S++TLI GY AI LF ++ +G E P
Sbjct: 86 LNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNP 145
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G +D A ++F+ +P D W +I Y + + AI +F MR V
Sbjct: 288 IDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQ 347
Query: 66 VSHIGVLTACS 76
+ +L AC+
Sbjct: 348 FTLASLLQACA 358
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+ G + A ++FD + KD SW ++ Y + ++ LF MR G +
Sbjct: 187 IDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNN 246
Query: 66 VSHIGVLTAC 75
+ VL AC
Sbjct: 247 FTFASVLKAC 256
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A K+FD++ D SW +I GY G ++ A+ LF M G++
Sbjct: 569 IDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANA 628
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ + VL ACS GG+VE+G +F +M+ V P HYAC++ LL
Sbjct: 629 VTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLL 674
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y++ G ++ K+FDR+ +D SW TL+ Y + A+ F MRE+G
Sbjct: 469 DAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQF 528
Query: 67 SHIGVLTACSLGGLVEKGKK 86
+ VL +C+ +E G++
Sbjct: 529 TFSSVLISCASLCFLEYGRQ 548
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +F+ + KD+ SW LI GYG+ G A+ +F M +G E
Sbjct: 360 VDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQ 419
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ VL+AC+ GLVE+G++ F+ M+ + P HY CM+ LL
Sbjct: 420 ITMTSVLSACNHCGLVEEGRRCFEAMERFGIVPQIEHYGCMIDLL 464
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+FD + V+ SW +I+GY G++ A LF+ M + V +
Sbjct: 165 VDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFN 224
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
V G + G ++ + FD+M+ +NV
Sbjct: 225 VMIDGYVKM----GRMDLARDLFDKMRVKNV 251
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y + GR+DLA +FD++ VK+ SW +++ GY G++D A LF+ M E V
Sbjct: 227 IDGYVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNV 282
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVS 67
Y+ G +D A +FD +P K+ SW +I GY G A+ LF MR + VE V+
Sbjct: 261 YSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVT 320
Query: 68 HIGV------LTACSLGGLVE 82
+ V L+A LGG V
Sbjct: 321 VVSVLPAVADLSALDLGGWVH 341
>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT+ G + + +F+ + KD SW ++I GYGM G + A+++F+ M + G
Sbjct: 476 VNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGYGMHGFGEKALSMFDRMIKSGCHPDG 535
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL+ACS GLVEKG+K F M R ++P + HYAC+V LL
Sbjct: 536 IALVAVLSACSHAGLVEKGRKIFYSMSKRFGLEPQQEHYACIVDLL 581
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + RI A +F +PV++ SW +I G+ + + A+ +FE M+ + +
Sbjct: 200 LTLYPKAARIGDAYNLFVEMPVRNRMSWNVMIKGFSQEFDCESAVKIFEWMQREDFKPDE 259
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
V+ +L+ S G E K+F M+
Sbjct: 260 VTWTSLLSCHSQCGKFEDVIKYFHVMR 286
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE----DGV 61
+ Y + G++ A ++F ++ K SW +LI + G+LD A++LF + E V
Sbjct: 336 IHVYGKQGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFTELEEMDDVCNV 395
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
+ V+ V+ C++ G + ++F MQ V C++ +
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSKVLSNSVTICCILSI 443
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 65/105 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + A K+F+R+ KD +W +++ + G A++ FE MR+ G+
Sbjct: 295 LDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQ 354
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + +LTACS GGLV++GK +FD ++ N++P HY +V LL
Sbjct: 355 ITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLL 399
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y R G++D+A +FD+L K+ SW LI G+ G+ + A+ +F M+ +G E
Sbjct: 194 LDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATH 253
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
++ + + + G +E+GK M K T
Sbjct: 254 FTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLT 287
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y + G + A+K+FD++ KD SW +LI GY AI L M
Sbjct: 93 IHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGM 143
>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
Length = 711
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G +++ANKIF + +++ ++ TLI G G D A LF+ M+ DGV V
Sbjct: 511 DMYCKCGCLEIANKIFLLMTERNTVTYNTLISSLGKHGHADQAFILFDLMKRDGVSPDKV 570
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
+ + +L+ CS GGL++KG F+D M + N+ P + HY+C+V L
Sbjct: 571 TFVALLSCCSHGGLIDKGLCFYDSMLRDYNIPPDKEHYSCIVDL 614
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R+D+A +F + KD SW T+I G+ +V+++LF M G++
Sbjct: 308 VDMYCKCARLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSLFTEMVASGIKPNS 367
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ +L + S L+ GK+
Sbjct: 368 TTIASILPSISELRLLRYGKEI 389
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYYPVSHI 69
R G + A ++FD +P ++S +W +I G G A+ + M DG V ++
Sbjct: 106 RDGGLGHAVRVFDGMPTRNSFAWNAVIKGLVDAGRFSEALRWYWDMVRDGSVVADRFTYP 165
Query: 70 GVLTACSLGGLVEKGKKFFDEMQ---ARNVKPTETHYAC 105
VL AC+ G VE+G+K + ++ AR + C
Sbjct: 166 PVLKACAALGEVEQGRKVQENVETDIARGIAKGNVFVQC 204
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSA---SWITLILGYGMLGELDVAINLFEAMREDGVE 62
+D Y + G + A ++FD++ V+D+ SW +I GY M G A++LFE M
Sbjct: 218 IDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVAKP 277
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ ++ +GVL+ACS GGL+E+G FF+ M + + PT HY CMV LL
Sbjct: 278 DH-ITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLL 325
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + A +FDR+P + W LI GY G + A+ L+ M + G+
Sbjct: 117 VNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDN 176
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ VL AC+ +E G++ + +
Sbjct: 177 FTFPFVLKACAALSAIEHGREIHEHV 202
>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 594
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A K F +P + +W ++I GY G AI LFE M G
Sbjct: 251 VNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNE 310
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + +L+ACS GLVE+ +++FD M+ +++P HY CMV + ++
Sbjct: 311 ITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVR 358
>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 750
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G +D A+++F+ + D +W I G+ G A+ LFE M G++
Sbjct: 427 ITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNS 486
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
V+ I VLTACS GLVE+GK + D M + NV PT HY CM+
Sbjct: 487 VTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMI 529
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A ++FD++ VK +W L++GY G A+ LF + +GVE+
Sbjct: 224 VNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDS 283
Query: 66 VSHIGVLTACS 76
VL AC+
Sbjct: 284 FVFSVVLKACA 294
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVE 62
P +DFY + + A + F + + SW +I GY + + + A+ F+++R ++ V
Sbjct: 323 PLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVV 382
Query: 63 YYPVSHIGVLTACSL 77
++ + ACS+
Sbjct: 383 LNSFTYTSIFQACSV 397
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
L Y G ++ A+K+FD + ++ S T+I Y G LD A+ LF M E G
Sbjct: 123 LQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESG 177
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ +++F+++ +D SW +I+GY G A+ +F M G +
Sbjct: 399 IDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDH 458
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ IGVL ACS GLVE+G+ +F M+ + P + HY CMV LL
Sbjct: 459 VTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLL 503
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A ++F + ++ +W +LI Y G A+ +F M + G+E
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDE 248
Query: 66 VSHIGVLTAC-SLGGLVE---------KGKKFFDEM 91
V+ V++AC SL L E K KF D++
Sbjct: 249 VTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++ A ++FDR+ +++ S +++ GY + A +F M + V
Sbjct: 291 VDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV---- 346
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
VS ++ + G E+ + F ++ ++ P THY
Sbjct: 347 VSWNALIAGYTQNGENEEALRLFRLLKRESIWP--THY 382
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 IEPRL-DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
I+ RL D Y + +D A K+FDR+P +++ +W +LI G LD A LF +M E
Sbjct: 52 IQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPE 109
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EYYPV 66
Y R + A +F ++ ++ SW LI GY GE + A+ LF ++ + + +Y
Sbjct: 325 YARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF 384
Query: 67 SHI---GVLTACSL------GGLVEKGKKFFDEMQARN 95
++ + SL G +E G + F++M+ R+
Sbjct: 385 GNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERD 422
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ +++F+++ +D SW +I+GY G A+ +F M G +
Sbjct: 429 IDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDH 488
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ IGVL ACS GLVE+G+ +F M+ + P + HY CMV LL
Sbjct: 489 VTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLL 533
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A ++F + ++ +W +LI Y G A+ +F M + G+E
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDE 248
Query: 66 VSHIGVLTAC-SLGGLVE---------KGKKFFDEM 91
V+ V++AC SL L E K KF D++
Sbjct: 249 VTLASVVSACASLCALKEGLQIHARVVKTNKFRDDL 284
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++ A ++FDR+ +++ S +++ GY + A +F M + V
Sbjct: 291 VDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV---- 346
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
VS ++ + G E+ + F ++ ++ P THY
Sbjct: 347 VSWNALIAGYTQNGENEEALRLFRLLKRESIWP--THY 382
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 2 IEPRL-DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
I+ RL D Y + +D A K+FDR+P +++ +W +LI G LD A LF +M E
Sbjct: 52 IQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPE 109
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R + A +F ++ ++ SW LI GY GE + A+ LF ++ + + +
Sbjct: 325 YARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF 384
Query: 69 IGVLTACS 76
+L+AC+
Sbjct: 385 GNLLSACA 392
>gi|297836444|ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331944|gb|EFH62363.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 723
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ID+A + FD++ K SW +I Y + G D A+ F+ M+ D
Sbjct: 477 VDAYAKCGAIDIARRTFDQITEKSIVSWTVIISAYAINGLPDKALASFDEMKRDSYTPNA 536
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
V+++ L+AC+ GGLV+KG F M + KP+ HY+C+V +L + +
Sbjct: 537 VTYLAALSACNHGGLVKKGLMIFRSMVEEDQKPSLQHYSCIVDMLSRAGE 586
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT +D A +FD + KD S T+I G G G D AI++F MR+ +
Sbjct: 378 MDAYTSCSLVDDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEAISIFCQMRD---KPNA 434
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ I +L+ACS+ ++ K
Sbjct: 435 ITVISLLSACSVSAVLRTSK 454
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ D A ++FD ++ SW +++ G+ D A+ +F M+++ +E
Sbjct: 277 IDMYSKGYDADSAFRVFDETTCRNIVSWNSILAGFVYNQRYDEALEMFRLMKKEALEADE 336
Query: 66 VSHIGVLTAC 75
V+ + +L C
Sbjct: 337 VTLVSLLQVC 346
>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
Length = 841
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G + A IF LP ++ SW +I GYGM G A+ F M EDG
Sbjct: 589 ITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNG 648
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ + VL+ACS G +E G + F M Q NV P HY+C+V LL +
Sbjct: 649 VTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLAR 696
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y+ G ++ ++++F+ +P +D+ W ++I Y G + A++LF M+ +GV+
Sbjct: 304 LNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDE 363
Query: 66 VSHIGVLTAC-SLGGLVEKGKKF 87
+ + +L+ C L + KGK
Sbjct: 364 RTVVIMLSMCEELASGLLKGKSL 386
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT ++ KIFDR+ D SW T+IL A LFE MRE ++
Sbjct: 406 LSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNS 465
Query: 66 VSHIGVLTAC 75
+ I +L AC
Sbjct: 466 YTIISILAAC 475
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 21 IFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80
+FD + V++ SW +I GY +G+ A+ LF M D V++ V+ + + AC+ G
Sbjct: 218 LFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGS 277
Query: 81 VEKGKKF 87
++ GK+
Sbjct: 278 LKLGKQI 284
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ A +FD + +D W ++ GY G + A+ L M + +
Sbjct: 102 VDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNS 161
Query: 66 VSHIGVLTAC 75
+ + +L AC
Sbjct: 162 RTMVALLLAC 171
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D +++ G ID A +IFD + KD SW +++ G + G A+ F M+ ++
Sbjct: 324 IDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDE 383
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IGVLTACS GLV++GKK F E++A V+ HY CMV LL +
Sbjct: 384 ITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCR 431
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A ++FD+L KD +W LI GY A+ LF + G P
Sbjct: 222 VNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREV-AGGSNMRP 280
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFD 89
V+ + V++AC+ G +E G+ D
Sbjct: 281 NEVTILAVISACAQLGDLETGRWVHD 306
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y G + A +F+R+ ++ W ++I GY + A+ L++ M EDG
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180
Query: 66 VSHIGVLTACS 76
V+ +++AC+
Sbjct: 181 VTMATLVSACA 191
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A KIFDR+ + D SW +I+G+ + G A++LFE M+ GV+
Sbjct: 349 VDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQ 408
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VLTACS GLV++ +F+ M + + HYA + LL
Sbjct: 409 VAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLL 454
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++ RI+ + ++F L +DS SW +L+ GY G + A+ LF M V
Sbjct: 248 VDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGA 307
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
V+ V+ AC+ + GK+
Sbjct: 308 VAFSSVIPACAHLATLHLGKQL 329
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A K FDR+P +D SW ++I GYG G+ + A+ ++ G++
Sbjct: 491 VDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNH 550
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V ++ +L+ACS GLV++G FF M ++P H AC+V LL +
Sbjct: 551 VIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSR 598
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY++ G A K+FD + ++ W T+I Y GE DVA +++ MR G++
Sbjct: 90 INFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSS 149
Query: 66 VSHIGVLT 73
V+ +G+L+
Sbjct: 150 VTMLGLLS 157
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G ++ + +FDR+ +D SW ++ G+ G L A+ LF MR+ ++
Sbjct: 392 MYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSIT 451
Query: 68 HIGVLTACSLGGLVEKGK 85
+ +L AC+ G + +GK
Sbjct: 452 VVSLLQACASIGALHQGK 469
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
L+ Y + GR++ A +F+ + +D SW +L+ GY LG + + L M+ DG+E
Sbjct: 188 LNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A +IF+ + KD SW +I G D+A+ +F M + V
Sbjct: 289 IGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPST 348
Query: 66 VSHIGVLTACS 76
+ VL AC+
Sbjct: 349 ATIASVLAACA 359
>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
Length = 640
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G + +A +FD+L ++ SW +I G+GM G D A LF MR + + P
Sbjct: 309 LDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEA-QVMP 367
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+AC+ GG+V++ K+ FD M ++KP HY C+V +L
Sbjct: 368 DHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVL 415
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y + G +D A +FD V+D+ W ++I G G A+ L M +G+
Sbjct: 208 IDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGI 263
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSA-SWITLILGYGMLGELDVAINLFE------AMRE 58
+D Y G + +A ++FD +P + + W LI Y G + AI L+ +M
Sbjct: 105 VDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEP 164
Query: 59 DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91
D Y P VL AC+ + G++ D +
Sbjct: 165 DNFTYPP-----VLKACAALLDLGAGREVHDRV 192
>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
[Vitis vinifera]
gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A K+F + + SW T+I+G+ G+ A+ +FE MR +G
Sbjct: 392 LDMYAKCGSMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNY 451
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ I VL ACS GGL+ +G ++F M + + P E HYACMV +L
Sbjct: 452 ITFICVLYACSQGGLINEGWEYFLSMDRDHGISPGEDHYACMVDML 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A+K+FD P +++ SW LI G+ A+ LF M GV
Sbjct: 77 LNMYAKCGHLPHAHKLFDHFPHRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINE 136
Query: 66 VSHIGVLTACSL 77
+ + L ACSL
Sbjct: 137 FTLVSALHACSL 148
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ K F+ + +D +W + G G+ A+ L E MR GV
Sbjct: 291 VDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNK 350
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ LTAC+ +E+GKK
Sbjct: 351 FTLATALTACANLASLEEGKK 371
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + GR++ + IF+ + +D +W ++ GY + AI LF+ M ++GVE
Sbjct: 307 LNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 366
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +L+ACS GLVE+GKK+F+ M + V+P HY+CMV LL
Sbjct: 367 VTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLL 412
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+ Y + G + A ++FD +P KD SW +L+ G G L +N F MR E G +
Sbjct: 104 VSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPN 163
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ + V++AC+ G +++GK
Sbjct: 164 EVTLLSVVSACADMGALDEGKSL 186
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ ++ Y + G +D A+++F+ +PV+ SW ++++ + G + ++LF M+ G
Sbjct: 201 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 260
Query: 61 VEYYPVSHIGVLTACSLGGL 80
+ + + +L AC+ GL
Sbjct: 261 INPDQATMVALLRACTDTGL 280
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD D SW +LI+GY G A+NLF M GV+
Sbjct: 607 IDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNE 666
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
V+++G L+ACS GLVE+G + + M+ + + PT H++C+V LL +
Sbjct: 667 VTYLGALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLAR 714
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT G+I+ A+ +F R+P KD SW T+I GY LG A+ LF + G Y P
Sbjct: 302 ISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGT-YQP 360
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
I V +ACS +E GK+
Sbjct: 361 NEFIFGSVFSACSSLLELEYGKQ 383
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A K+FD + + + SW ++I GY G+ + AI ++ M G
Sbjct: 201 INMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQ 260
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
++ V+ AC + G ++ G+ ++ A +K H+
Sbjct: 261 LTFGSVIKACYIAGDIDLGR----QLHAHVIKSWFGHH 294
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G + A F ++ D SW +I + G+ + AI+ F M G+ +
Sbjct: 405 DMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSI 464
Query: 67 SHIGVLTACSLGGLVEKGKK 86
++I +L C + +G++
Sbjct: 465 TYISLLCTCGSPVRLNQGRQ 484
>gi|242046394|ref|XP_002461068.1| hypothetical protein SORBIDRAFT_02g040090 [Sorghum bicolor]
gi|241924445|gb|EER97589.1| hypothetical protein SORBIDRAFT_02g040090 [Sorghum bicolor]
Length = 484
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A +FD + +D +W +I+G+G+ G+ I LF M EDGV
Sbjct: 333 MDMYFKCGCPSEAAAVFDAIRNRDVKAWTAMIMGFGVNGQPGSTITLFYRMEEDGVFPND 392
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +LTAC+ GGLV++ K+F + M R + P+ HY+C++ LL
Sbjct: 393 VTFLALLTACNHGGLVQEAKEFLETMARRYRLSPSPEHYSCVIDLL 438
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G ++ ANK+F +D ++ GY G++ A++L + MR+ G+
Sbjct: 232 MGMYVREGSVECANKVFHETTRRDLVLCNCMVDGYAKAGQIREAMDLIDGMRQHGMRPSS 291
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+ +GVL+AC G + G +
Sbjct: 292 GTLVGVLSACGTSGALAAGHSVHE 315
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY +G + + ++F+ +P KD+ SW T+I GY + ++ A+ +F AMR GV+ V+
Sbjct: 139 FYCSSGNMADSRRMFEEMPEKDAVSWNTVIGGYVRVEDVGTALQMFTAMRWSGVDVN-VT 197
Query: 68 HIGVLTACSLGG 79
+ L C G
Sbjct: 198 AVITLIGCGWQG 209
>gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa]
gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa]
Length = 526
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A IF+ + KD SW ++I GY G I LFE M+ GV+
Sbjct: 271 VSMYCKCGNVEDAFHIFENMVGKDIVSWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDA 330
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +GVL++C G VE G+ +F+ M VKP HY+C+V LL
Sbjct: 331 ITFLGVLSSCRHAGFVEGGRNYFNSMVEYGVKPELDHYSCIVDLL 375
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY + G +D A K+F +PV++ SW +I G+ ++D+ + L+ MR ++ +
Sbjct: 172 FYGKCGELDNAYKVFKEMPVRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFT 231
Query: 68 HIGVLTACSLGGLVEKGKK 86
+L+AC+ G + +G+
Sbjct: 232 FTSLLSACTGSGALGQGRS 250
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ + ++F ++PVK+ SW LI G G+ A+ F M E VE
Sbjct: 368 MDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPND 427
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ IGVL+ACS GLV++G+ F M ++P HY CMV +L
Sbjct: 428 VTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDIL 473
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I +D Y + G++D A ++FD++ +D +W +I GY A++LF M++
Sbjct: 262 LITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKAN 321
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
++ ++ + +L++C++ G +E GK
Sbjct: 322 IDPNEITMVSILSSCAVLGALETGK 346
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G +++A ++FD + ++ +W ++ GY G + + LF M E + +
Sbjct: 166 IHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDE 225
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
V+ + VLTAC +E G+ ++ + +K T +V + K Q
Sbjct: 226 VTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQ 275
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G + A IF LP ++ SW +I GYGM G A+ F M EDG
Sbjct: 602 ITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNG 661
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ + VL+ACS G +E G + F M Q NV P HY+C+V LL +
Sbjct: 662 VTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLAR 709
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y+ G ++ ++++F+ +P +D+ W ++I Y G + A++LF M+ +GV+
Sbjct: 297 LNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDE 356
Query: 66 VSHIGVLTAC-SLGGLVEKGKKF 87
+ + +L+ C L + KGK
Sbjct: 357 RTVVIMLSMCEELASGLLKGKSL 379
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT ++ KIFDR+ D SW T+IL A LFE MRE ++
Sbjct: 399 LSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNS 458
Query: 66 VSHIGVLTAC 75
+ I +L AC
Sbjct: 459 YTIISILAAC 468
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 21 IFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80
+FD + V++ SW +I GY +G+ A+ LF M D V++ V+ + + AC+ G
Sbjct: 211 LFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGS 270
Query: 81 VEKGKKF 87
++ GK+
Sbjct: 271 LKLGKQI 277
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ A +FD + +D W ++ GY G + A+ L M + +
Sbjct: 95 VDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNS 154
Query: 66 VSHIGVLTAC 75
+ + +L AC
Sbjct: 155 RTMVALLLAC 164
>gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
+D Y++ GR D A ++FD++ ++ SW ++I GYG G A+ LF M+E ++
Sbjct: 314 IDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQEKHQIQPN 373
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + L+AC+ GGLVE+G + F+ M+ ++KP HYACMV LL
Sbjct: 374 FVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLL 420
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G +D A+ +F +P D+ SW +I G G+ AI LFE M ++G+
Sbjct: 467 ITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDR 526
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
+S + V++ACS GLV++G+K+FD M V P E HYA ++ LL +
Sbjct: 527 ISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCR 574
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY + G++D+A +IF+++P +D SW ++ GY + +D A + F M E +
Sbjct: 335 ITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNI---- 390
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
+S I +++ + G E+ KFF+ M+ + +P + +A
Sbjct: 391 LSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFA 429
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFE----AMREDGV 61
+D Y+++ +++ A +FD +P D + TLI Y G+L ++ +F MR+
Sbjct: 55 IDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDS-- 112
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
V + ++TA S + F +MQ N +P
Sbjct: 113 ----VFYNAMITAYSHNHDGHAAIELFCDMQRDNFRP 145
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVA 49
A K+FD +P +D SW T+I GY +LD A
Sbjct: 211 ARKLFDEMPNRDELSWTTIITGYVKNNDLDAA 242
>gi|383152426|gb|AFG58310.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ A K+F+R+ +D SW +I+GY + G A+ LFE M+ G
Sbjct: 49 LDMYAKCGSLEDARKVFNRMTTRDVVSWNAMIVGYAIHGCGKEALQLFEQMKHTGTGPDH 108
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACM 106
V+ IGVL+A GLV+ G ++FD M + ++ P HY CM
Sbjct: 109 VTFIGVLSATCHAGLVDDGWQYFDSMVEDYHITPVMEHYCCM 150
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID ++FD++ +D SW T+I+G G AI LF+ M++ +E
Sbjct: 291 IEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNI 350
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L+AC+ GL+ +G ++F+ M+ N++P HY C+V LL
Sbjct: 351 ITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLL 396
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + +D A+K+F+ + +D+ SW TLI G+ LG++ A +FE M++ +
Sbjct: 159 VEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTI---- 214
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
S +++ + G +FF MQ ++P E
Sbjct: 215 FSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDE 249
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G++ A IF+ + K SW ++ GY +G A+ F M+ G+E +S
Sbjct: 193 HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISL 252
Query: 69 IGVLTACSLGGLVEKGK 85
+ VL AC+ G +E GK
Sbjct: 253 VSVLPACAQLGALELGK 269
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ A +F+RL K+ +W +I G+ G A++LF M V
Sbjct: 348 IDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNE 407
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I VL+AC+ GGLVE+G++ F M+ R N++P HYACMV L
Sbjct: 408 VTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLF 453
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A K+FD +P ++ +W LI GY + + +FE M + V
Sbjct: 247 VDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNE 306
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL+AC+ G + +G++
Sbjct: 307 KTLSSVLSACAHVGALHRGRR 327
>gi|449462669|ref|XP_004149063.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
+D Y++ GR D A ++FD++ ++ SW ++I GYG G A+ LF M+E ++
Sbjct: 314 IDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQEKHQIQPN 373
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + L+AC+ GGLVE+G + F+ M+ ++KP HYACMV LL
Sbjct: 374 FVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLL 420
>gi|356550078|ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Glycine max]
Length = 315
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G + A K+FDR+ ++ ++ T++ GYGM G+ LF+ M E G
Sbjct: 151 INMYSKCGHLVYARKLFDRMWQRNEITFSTMMAGYGMHGKCGEVFELFDKMVEAGERPDG 210
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ VL+ACS GG ++KG+++ M+ R VKP HY CMV +L + Q
Sbjct: 211 VTFTAVLSACSHGGFIDKGREYLKMMEVRFGVKPGLHHYTCMVDMLGRVGQ 261
>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
Length = 648
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A ++F + + SW T++ G G G A+ LFE MR GVE
Sbjct: 308 VDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDE 367
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+++ +L+ACS GLV++ +++F ++ R V+P HYACMV LL
Sbjct: 368 VTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLL 413
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R+ +A ++F+RL K+ W +++G+ G++ A+ LF G P
Sbjct: 207 VDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGAR--P 264
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
SH+ V+ + LVE+G++
Sbjct: 265 DSHVLSSVVGVLADFALVEQGRQ 287
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDS-ASWITLILGYGMLGELDVAINLFEAMREDGVEYYP-- 65
Y++ GRI A ++FD + A+W ++ GY G A+ +F MR ++ P
Sbjct: 104 YSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDE 163
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
+ +L ACS G +G + M A
Sbjct: 164 FTFASLLKACSGLGATREGAQVHAAMTA 191
>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
gi|194688780|gb|ACF78474.1| unknown [Zea mays]
gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
Length = 695
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A ++F + + SW T++ G G G A+ LFE MR GVE
Sbjct: 355 VDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDE 414
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+++ +L+ACS GLV++ +++F ++ R V+P HYACMV LL
Sbjct: 415 VTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLL 460
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R+ +A ++F+RL K+ W +++G+ G++ A+ LF G P
Sbjct: 254 VDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGAR--P 311
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
SH+ V+ + LVE+G++
Sbjct: 312 DSHVLSSVVGVLADFALVEQGRQ 334
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDS-ASWITLILGYGMLGELDVAINLFEAMREDGVEYYP-- 65
Y++ GRI A ++FD + A+W ++ GY G A+ +F MR ++ P
Sbjct: 151 YSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDE 210
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
+ +L ACS G +G + M A
Sbjct: 211 FTFASLLKACSGLGATREGAQVHAAMTA 238
Score = 35.0 bits (79), Expect = 5.9, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR---EDGVE 62
+D Y + G +DLA ++F + ++ SW L++G+ G+ + L MR E
Sbjct: 46 IDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPN 105
Query: 63 YYPVSHIGVLTACSLGGLVEKG 84
Y +S L AC + G G
Sbjct: 106 EYTLS--ASLKACCVVGDTAAG 125
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + GR++ + IF+ + +D +W ++ GY + AI LF+ M ++GVE
Sbjct: 364 LNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 423
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +L+ACS GLVE+GKK+F+ M + V+P HY+CMV LL
Sbjct: 424 VTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLL 469
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+ Y + G + A ++FD +P KD SW +L+ G G L +N F MR E G +
Sbjct: 161 VSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPN 220
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ + V++AC+ G +++GK
Sbjct: 221 EVTLLSVVSACADMGALDEGKSL 243
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 45/80 (56%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ ++ Y + G +D A+++F+ +PV+ SW ++++ + G + ++LF M+ G
Sbjct: 258 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 317
Query: 61 VEYYPVSHIGVLTACSLGGL 80
+ + + +L AC+ GL
Sbjct: 318 INPDQATMVALLRACTDTGL 337
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G + A +FD + +D SW ++I YG G AI+LFE M G+E
Sbjct: 169 MDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDS 228
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +L ACS GL++ GK +F M + ++ P HYACMV LL
Sbjct: 229 IAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLL 274
>gi|383152429|gb|AFG58313.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152430|gb|AFG58314.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ A K+F+R+ +D SW +I+GY + G A+ LFE M+ G
Sbjct: 49 LDMYAKCGSLEDARKVFNRMTTRDVVSWNAMIVGYAIHGCGKEALQLFEQMKHTGTGPDH 108
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACM 106
V+ IGVL+A GLV+ G ++FD M + ++ P HY CM
Sbjct: 109 VTFIGVLSATCHAGLVDDGWQYFDSMVEDYHITPVMEHYCCM 150
>gi|383152414|gb|AFG58299.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152415|gb|AFG58300.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152416|gb|AFG58301.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152417|gb|AFG58302.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152418|gb|AFG58303.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152419|gb|AFG58304.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152421|gb|AFG58305.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152422|gb|AFG58306.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152424|gb|AFG58308.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152425|gb|AFG58309.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152427|gb|AFG58311.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
gi|383152428|gb|AFG58312.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ A K+F+R+ +D SW +I+GY + G A+ LFE M+ G
Sbjct: 49 LDMYAKCGSLEDARKVFNRMTTRDVVSWNAMIVGYAIHGCGKEALQLFEQMKHTGTGPDH 108
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACM 106
V+ IGVL+A GLV+ G ++FD M + ++ P HY CM
Sbjct: 109 VTFIGVLSATCHAGLVDDGWQYFDSMVEDYHITPVMEHYCCM 150
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y ++G I+ A +F+ + K D+ +W ++I+ G + A+ LFE M E+G++
Sbjct: 454 ITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPD 513
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++++GVL+AC+ GLVE+G+ +++ MQ A + PT +HYACM+ L
Sbjct: 514 HITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLF 560
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + GR++ A+++F+ +P DS SW +I+GY +G+ + AI +F M D V
Sbjct: 86 LSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQ 145
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL +C+ + G+K
Sbjct: 146 FTLTNVLASCAAVECLGIGRK 166
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY +TG I A+++FD +PVK SW ++ GY G L+ A +FE M E
Sbjct: 55 MNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPD----S 110
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++ + G E F EM + +V PT+
Sbjct: 111 VSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQ 145
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
LD Y + G I+ A +IFD L V+D +W +I+GY G A+ LF +M ++G
Sbjct: 353 LDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEG 407
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
L+ Y ++G A +FDR+ +K ++SW T+I + G +D+A FE M E V
Sbjct: 187 LNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDV 242
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A KIFDR+ V D SW +I+G+ + G A++LFE M+ GV+
Sbjct: 385 VDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQ 444
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VLTACS GLV++ +F+ M + + HYA + LL
Sbjct: 445 VAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLL 490
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++ RI+ + ++F RL +D SW +L+ GY G + A+ LF M V+
Sbjct: 284 VDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGA 343
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
V+ V+ AC+ + GK+
Sbjct: 344 VAFSSVIPACAHLATLHLGKQL 365
>gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza sativa Japonica Group]
Length = 486
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+++A ++FD P K+ +W LI+G M G VA++ F+ M +G
Sbjct: 272 VDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDG 331
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE-THYACMVYLL 110
+ +GVL CS GLV+ ++ F EMQ + P E HY CM LL
Sbjct: 332 TTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLL 377
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR+ LA ++F+ +P +D+ SW T++ G G L+ A+ LF+ MR +G V+
Sbjct: 174 YVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVAL 233
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
VL+ C+ G ++KG++ + + R +P Y C
Sbjct: 234 AAVLSCCAQLGALDKGQEVHEYV--RRTRPRPNVYLC 268
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R+ D A ++FD + D S L+ GY G L +A+ +FE M E
Sbjct: 140 ISLYARSALPDSARRVFDGMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDA---- 195
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS V+ C+ G +EK + FD M+ +P + A ++
Sbjct: 196 VSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVL 237
>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 603
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A KIFD + KD ASW +I+GYGM G A+ +F M E +
Sbjct: 362 MDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNE 421
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL+AC+ G V G+ F +M++ V PT HY C++ +L
Sbjct: 422 VTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDML 467
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A K+F L ++D W +I GY +G LD A+ +F M GV
Sbjct: 152 VNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSR 211
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ G+L+ + G ++ GK
Sbjct: 212 FTITGILSVFASRGDLDNGK 231
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I A IF+ + KD SW ++I + G+ D + LF+ M G+
Sbjct: 253 IDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDL 312
Query: 66 VSHIGVLTACS 76
V+ VL ACS
Sbjct: 313 VTITTVLPACS 323
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + + ++FD +P K SW ++ GYG+ G AI++ + M+ + V
Sbjct: 406 VDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDN 465
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+L+ACS GLV +GK+ F +M+ NVKP +HY+CMV LL
Sbjct: 466 GVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLL 511
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A +FDR+ +D SW T+I GY + A +F+ M + G+
Sbjct: 203 LAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADC 262
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +G+L+AC+ V++GK
Sbjct: 263 TTLLGLLSACADLKAVKEGK 282
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75
A ++F+R+ KD+ SW ++ILGY G+ ++ LF M DG V+ I VL AC
Sbjct: 317 ARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGAC 374
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ ++F+ + KD SW T+I+GY G A+ LF+ M E G +
Sbjct: 438 IDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDH 497
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IG L ACS GLVE+G+++F M + + P + HY CMV LL
Sbjct: 498 VTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLL 543
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A +FDR+PV+++ S T++ GY + A ++F +++ +
Sbjct: 300 VDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDI---- 355
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
VS ++ + G E+ F ++ +V P THY
Sbjct: 356 VSWNALIAGYTQNGENEEALGLFRMLKRESVCP--THY 391
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY++ G + A ++FD + K+ SW LI Y G A+ F M E G +
Sbjct: 198 IDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDE 257
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V+ V++AC+ ++G ++ AR VK
Sbjct: 258 VTLASVVSACATLAAFKEGV----QIHARVVK 285
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G +D + +F +P KD SW ++I G+ + A++ F M D S
Sbjct: 102 RWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGS 161
Query: 71 VLTACS----------LGGLVEKGKKFFD 89
L+ACS + GL+ K K D
Sbjct: 162 GLSACSRLKDLKLGAQIHGLISKSKYSLD 190
>gi|116309314|emb|CAH66401.1| OSIGBa0155K12.4 [Oryza sativa Indica Group]
Length = 486
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+++A ++FD P K+ +W LI+G M G VA++ F+ M +G
Sbjct: 272 VDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDG 331
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE-THYACMVYLL 110
+ +GVL CS GLV+ ++ F EMQ + P E HY CM LL
Sbjct: 332 TTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLL 377
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR+ LA ++F+ +P +D+ SW T++ G G L+ A+ LF+ MR +G V+
Sbjct: 174 YVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVAL 233
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
VL+ C+ G ++KG++ + + R +P Y C
Sbjct: 234 AAVLSCCAQLGALDKGQEVHEYV--RRTRPRPNVYLC 268
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R+ D A ++FDR+ D S L+ GY G L +A+ +FE M E
Sbjct: 140 ISLYARSALPDSARRVFDRMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDA---- 195
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS V+ C+ G +EK + FD M+ +P + A ++
Sbjct: 196 VSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVL 237
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++G +D A +FD + ++ SW +L+ GYGM G + A+ +F M++ G+
Sbjct: 522 IDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDG 581
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ + VL ACS G+V++G +F+ M V P HYACMV LL +
Sbjct: 582 VTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSR 629
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ ANK+F+R+ VKD SW ++ GY +G D A+ LFE +RE+ +E
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 332
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
V+ V+ + GL + F +M+ +P
Sbjct: 333 VTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPN 366
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRL---PVKDSASWITLILGYGMLGELDVAINLFEAMRED-GV 61
+ Y R G + A ++FD + V D SW +++ Y G+ A+ +FE M ED G+
Sbjct: 168 VSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGI 227
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKK 86
VS + VL AC+ G +GK+
Sbjct: 228 RPDAVSLVNVLPACASVGAWSRGKQ 252
>gi|357448257|ref|XP_003594404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483452|gb|AES64655.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 516
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G+I A +FD + KD SW +I GYG G A+ LF M EDG E P
Sbjct: 297 LDMYAKCGKILQAWSVFDGIFQKDVISWTCMIDGYGRNGCGYEAVELFWKMMEDGSEVLP 356
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL+AC GLVE+GK+ F+ M+ + + P HYAC + +L
Sbjct: 357 NSVTFLSVLSACGHSGLVEEGKQCFNIMKEKYGIDPEPEHYACFIDIL 404
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y+R G ++ + K+FD + +D +W TL+ + G+ D AI + M + VE
Sbjct: 100 LDMYSRHGSLNSSLKVFDEMLHRDVVAWNTLLSCFLRCGKPDEAIRVLREMGRENVEMSE 159
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL C+ +E G++
Sbjct: 160 FTLCSVLKCCASLKALEFGRQ 180
>gi|223947353|gb|ACN27760.1| unknown [Zea mays]
gi|413934876|gb|AFW69427.1| selenium-binding protein [Zea mays]
Length = 504
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT+ G + A+++F+ + ++ +W +I+GY G + A+ LF+ M++ V
Sbjct: 251 VNMYTKCGEVSYASRLFENMAARNVWTWSAMIMGYSQNGMVREALELFDRMKDASVAPNY 310
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ +G+L CS GLV +G+KFF EM+ +KP THY+ MV +L
Sbjct: 311 VTFLGLLCGCSHAGLVNEGRKFFHEMEHVYGIKPMMTHYSAMVDVL 356
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +FD L ++D SW +I GY M G AI +F M+E +
Sbjct: 391 IDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDE 450
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS G +++GK++F M Q ++P HY CMV+L+
Sbjct: 451 LTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLM 496
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+ +G + +A ++FD + KD SW +I Y A+ F MR G +
Sbjct: 88 IDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNN 147
Query: 66 VSHIGVLTAC 75
+ GVL AC
Sbjct: 148 FTFAGVLKAC 157
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I+ + ++F+ L ++ SW T+I+ Y LG+ + A++LF M V+ V++
Sbjct: 293 YAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTY 352
Query: 69 IGVLTACSLGGLVEKG 84
+L AC+ +E G
Sbjct: 353 SSILRACATLAALELG 368
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 21 IFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
+FD +P +++ S++TLI GY + A LF + +G E P VL
Sbjct: 2 VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVL 53
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A ++FD +PVKD+ +W ++I+G + G + A+ F M E V+
Sbjct: 235 VNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNH 294
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ IGVL+AC+ GLV +G++++ M + P+ Y CMV LL +
Sbjct: 295 VTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCR 341
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY + I LA+K+FD + ++ +W T+I GY +G ++ A+ LF M++ GV
Sbjct: 134 VNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDE 193
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + V++AC+ G ++ GK
Sbjct: 194 VTMVSVISACAASGALDTGK 213
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 65/107 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A ++FD +PVKD+ +W ++I+G + G + A+ F M E V+
Sbjct: 304 VNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNH 363
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ IGVL+AC+ GLV +G++++ M + P+ Y CMV LL +
Sbjct: 364 VTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCR 410
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY + I LA+K+FD + ++ +W T+I GY +G ++ A+ LF M++ GV
Sbjct: 203 VNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDE 262
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + V++AC+ G ++ GK
Sbjct: 263 VTMVSVISACAASGALDTGK 282
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++LA ++F+ + +D W +I+G+ + G A+ LF+AMR VE
Sbjct: 330 VDMYAKCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMR---VEPDH 386
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQKA 117
V+ +GVL ACS GGLV++G+ +F M + + P HY CMV +L + + A
Sbjct: 387 VTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVA 439
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G ++ A ++F +P +D+ SW +LI GY LG A+ +F M++ GVE ++
Sbjct: 232 HARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTL 291
Query: 69 IGVLTACSLGGLVEKGK 85
+ VL AC+ G +E GK
Sbjct: 292 VSVLGACAEIGELELGK 308
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 27/122 (22%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR+ A K+FD +P +++ SW L+ +G G+L L M E V ++
Sbjct: 167 VSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGATGDLHGVELLSREMPERSVSWWN 226
Query: 66 V-----SHIGVLTACS-----------------LGGLVEKGK-----KFFDEMQARNVKP 98
+ +G + A + +GG + G+ + F EMQ V+P
Sbjct: 227 AEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVFREMQDSGVEP 286
Query: 99 TE 100
TE
Sbjct: 287 TE 288
>gi|297839315|ref|XP_002887539.1| hypothetical protein ARALYDRAFT_339633 [Arabidopsis lyrata subsp.
lyrata]
gi|297333380|gb|EFH63798.1| hypothetical protein ARALYDRAFT_339633 [Arabidopsis lyrata subsp.
lyrata]
Length = 665
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-----EDG 60
L+ Y ++G I+ A K+FD KD ++ +I GY + GE ++ LF+ M+ +D
Sbjct: 211 LNMYVKSGEIEKARKLFDETMRKDVTTYTCMIFGYALNGEAQESLELFKKMKMIDQSQDT 270
Query: 61 V-EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V V+ IGVL ACS GLVE+GK++F M N+KP + H+ CMV L +
Sbjct: 271 VITPNDVTFIGVLMACSHSGLVEEGKQYFKSMIVDYNLKPRDAHFGCMVDLFCR 324
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDS-ASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
FY+ G +D A ++FD P K + W +I Y AI LF+ M E+ +E V
Sbjct: 109 FYSSAGDLDDARQVFDETPEKQNIVLWTAMISAYSENENSVEAIKLFKRMEEEKIELDEV 168
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
L+AC+ G V+ G++ + +R++K
Sbjct: 169 IVTAALSACADLGAVQMGEQIY----SRSIK 195
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G + A +FD + +D SW ++I YG G AI+LFE M G+E
Sbjct: 224 MDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDS 283
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +L ACS GL++ GK +F M + ++ P HYACMV LL
Sbjct: 284 IAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLL 329
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYYPVSH 68
R I L +FD + K SW ++ Y E+ V A+ LF M++DG+E V+
Sbjct: 127 ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTN-NEMHVEAVELFMRMQKDGIEPDAVTL 185
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
VL +C + GK+ + ++ R +
Sbjct: 186 ATVLPSCGEVSALSLGKRIHEVIKRRRM 213
>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y++ GR+ A ++FD + K+ SW ++I GYG G D A+ LF+ M+ E +
Sbjct: 317 IDMYSKCGRVIDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYSITPN 376
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + LTAC+ GLVE+G + F M++ +KP HYACMV LL
Sbjct: 377 FVTFLSALTACAHAGLVERGWEIFQSMESEYKLKPRMEHYACMVDLL 423
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G + A +FD + +D SW ++I YG G AI+LFE M G+E
Sbjct: 334 MDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDS 393
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +L ACS GL++ GK +F M + ++ P HYACMV LL
Sbjct: 394 IAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLL 439
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYYPVSH 68
R I L +FD + K SW ++ Y E+ V A+ LF M++DG+E V+
Sbjct: 237 ARVEDIALLKGVFDEMRFKGLISWNAMLAVYTN-NEMHVEAVELFMRMQKDGIEPDAVTL 295
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
VL +C + GK+ + ++ R +
Sbjct: 296 ATVLPSCGEVSALSLGKRIHEVIKRRRM 323
>gi|297734518|emb|CBI15765.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A K+F+ + D + W ++I G + G AI +F M + V
Sbjct: 223 IDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDS 282
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IG+LTACS GLVE+G+++FD M+ +++P HY MV LL
Sbjct: 283 ITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLL 328
>gi|223949281|gb|ACN28724.1| unknown [Zea mays]
Length = 460
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A ++F + + SW T++ G G G A+ LFE MR GVE
Sbjct: 120 VDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDE 179
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+++ +L+ACS GLV++ +++F ++ R V+P HYACMV LL
Sbjct: 180 VTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLL 225
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R+ +A ++F+RL K+ W +++G+ G++ A+ LF G P
Sbjct: 19 VDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGAR--P 76
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
SH+ V+ + LVE+G++
Sbjct: 77 DSHVLSSVVGVLADFALVEQGRQ 99
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A+++F+ LP K +SW +I G M G+ + AI LF+ M + V
Sbjct: 239 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 298
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + VL+AC+ GLVE+GK +F M + +KP H+ CMV LL
Sbjct: 299 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLL 344
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKD--SASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+ Y ++ A ++FD +P +D S SW +I Y L A LF+ MR + V
Sbjct: 136 IHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVL 195
Query: 64 YPVSHIGVLTACSLGGLVEKGK 85
+L+AC+ G +E+GK
Sbjct: 196 DKFVAASMLSACTGLGALEQGK 217
>gi|115477230|ref|NP_001062211.1| Os08g0511000 [Oryza sativa Japonica Group]
gi|42407533|dbj|BAD10739.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113624180|dbj|BAF24125.1| Os08g0511000 [Oryza sativa Japonica Group]
gi|215741604|dbj|BAG98099.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 512
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G A +IF L KD +W ++I+G G A+ LF M+ GV
Sbjct: 304 MDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDH 363
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQKA 117
V+ +GVLTACS G+V++ +K+FD M ++PT HY CM+ L + + A
Sbjct: 364 VAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLA 416
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G +D A ++FD++P ++ SW + G D + +F M G++
Sbjct: 203 LHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQDKVLEVFPGMHSVGMKPDK 262
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G G+
Sbjct: 263 VTWLSILRACTSKGAAGLGQ 282
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
LD Y + G I +A IF+++ + +D SW +I+G M G A++LFE M DGV+
Sbjct: 342 LDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKP 401
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VLTACS GLV++G K+F+ MQ V P HYA + LL
Sbjct: 402 CYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLL 449
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 14 RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73
+ID K+FDR+PV+D SW T+I G G + A+N+ + M ++ + + +L
Sbjct: 148 KIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILP 207
Query: 74 ACSLGGLVEKGKK 86
+ V KGK+
Sbjct: 208 IFTEHANVTKGKE 220
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++L+ F L +D+ SW ++I G G D + F M ++ V+
Sbjct: 241 IDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQ 300
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
VS V+ AC+ + GK+
Sbjct: 301 VSFSSVIPACAHLTALNLGKQL 322
>gi|222640847|gb|EEE68979.1| hypothetical protein OsJ_27898 [Oryza sativa Japonica Group]
Length = 596
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G A +IF L KD +W ++I+G G A+ LF M+ GV
Sbjct: 305 MDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDH 364
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQKA 117
V+ +GVLTACS G+V++ +K+FD M ++PT HY CM+ L + + A
Sbjct: 365 VAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLA 417
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G +D A ++FD++P ++ SW + G D + +F M G++
Sbjct: 204 LHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQDKVLEVFPGMHSVGMKPDK 263
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G G+
Sbjct: 264 VTWLSILRACTSKGAAGLGQ 283
>gi|218201434|gb|EEC83861.1| hypothetical protein OsI_29841 [Oryza sativa Indica Group]
Length = 595
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G A +IF L KD +W ++I+G G A+ LF M+ GV
Sbjct: 304 MDMYSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDH 363
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQKA 117
V+ +GVLTACS G+V++ +K+FD M ++PT HY CM+ L + + A
Sbjct: 364 VAFVGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLA 416
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G +D A ++FD++P ++ SW + G D + +F M G++
Sbjct: 203 LHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQDKVLEVFPGMHSVGMKPDK 262
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G G+
Sbjct: 263 VTWLSILRACTSKGAAGLGQ 282
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A K FDR+P +D SW ++I GYG G+ + A+ ++ G++
Sbjct: 491 VDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNH 550
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V ++ +L+ACS GLV++G FF M ++P H AC+V LL +
Sbjct: 551 VIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSR 598
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY++ G A K+FD + ++ W T+I Y GE DVA +++ MR G++
Sbjct: 90 INFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSS 149
Query: 66 VSHIGVLTA 74
V+ +G+L+
Sbjct: 150 VTMLGLLSG 158
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G ++ + +FDR+ +D SW ++ G+ G L A+ LF MR+ ++
Sbjct: 392 MYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSIT 451
Query: 68 HIGVLTACSLGGLVEKGK 85
+ +L AC+ G + +GK
Sbjct: 452 VVSLLQACASIGALHQGK 469
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
L+ Y + GR++ A +F+ + +D SW +L+ GY LG + + L M+ DG+E
Sbjct: 188 LNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A +IF+ + KD SW +I G D+A+ +F M + V
Sbjct: 289 IGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPST 348
Query: 66 VSHIGVLTACS 76
+ VL AC+
Sbjct: 349 ATIASVLAACA 359
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F+ +P ++S +W +I G + G+ AI+ F M G+
Sbjct: 430 VDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDE 489
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IGVL+AC GGLV++G+ +F +M ++ + P HY+C+V LL
Sbjct: 490 ITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLL 535
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I+ A +F+ + K SW T+++GY G L+ A+ LF M E V
Sbjct: 298 MDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV---- 353
Query: 66 VSHIGVLTACSLGGLVEKGKK-----FFDEMQARNVKP 98
VL +GG V+ + F EMQA +V P
Sbjct: 354 -----VLWNALIGGFVQAKRSKEALALFHEMQASSVAP 386
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + A K+FD V+D SW ++I GY G D A +L+ M E V V+ IGV+
Sbjct: 204 GELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV 263
Query: 73 TACSLGGLVEKGKKFFDEMQARNVKPT 99
+A + + G+K ++ + T
Sbjct: 264 SASAQLENLALGRKLHQSIEEMGLNLT 290
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R GR+D A ++F+ + D+ +W +I GY G A+ LF M++ GV
Sbjct: 355 ITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNA 414
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
V+ I VLTACS GLV +G+++ + M + V T HY CMV
Sbjct: 415 VTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMV 457
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
P +DFY + ++ A K F+ + + SW LI GY +GE + A+ FE++R V+
Sbjct: 252 PLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDI 311
Query: 64 YPVSHIGVLTACS 76
++ + ACS
Sbjct: 312 NSFTYTSIFQACS 324
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
+ Y + G ++ A +F+++ K++ +W +++GY A+ LF M +GVE
Sbjct: 154 NMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEY 213
Query: 67 SHIGVLTACS 76
VL AC+
Sbjct: 214 VFSIVLKACA 223
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G + A K+FD + ++ SW T+I Y G D +F M E +
Sbjct: 52 LKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNG 111
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
++IG L + +E GK+
Sbjct: 112 STYIGFLRSLLNPSGLEIGKQ 132
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++FD + +KD W T+I+G + G A+ LF+ M +E
Sbjct: 359 VDMYAKCGNLKLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDLMN---IEPDH 415
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
V+ +GVLTACS GL+ +G+ +F M + + P+ HY C++ +L +Y +
Sbjct: 416 VTFLGVLTACSHSGLLNEGRVYFKSMIEDYKIVPSMKHYGCIINMLCRYGK 466
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR+ A K FD +PVK++ SW L++ +G+ G+L A + +A E + ++
Sbjct: 196 VSMYGQFGRLGEARKAFDEMPVKNAVSWNALVVAHGVSGDLQGAERVSQATPERNISWW- 254
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ ++ LG LVE + F D M R+V
Sbjct: 255 --NSEIMRNVRLGDLVEAARIFRD-MPERDV 282
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G + A +IF +P +D SW +LI GY LG A+++F M ++ +E ++ +
Sbjct: 262 VRLGDLVEAARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDMWKNDIEPTELTVV 321
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNVK 97
L AC+ G +E G+ D ++++ ++
Sbjct: 322 SALGACAEVGELELGRGIHDYLKSKGIE 349
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I +D Y++ G ID A ++F P K + W +LILG M G + A+ LF +
Sbjct: 266 VITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSN 325
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ VS IGVLTAC+ G+V++ K +F M + ++P+ HY+CMV +L
Sbjct: 326 LKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVL 376
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ G ID + ++FD++ ++++ SW ++I GY G A+ LF M+E+G++ + +
Sbjct: 174 AKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMV 233
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARN 95
+L AC+ G + +G+ D + N
Sbjct: 234 SLLNACACLGALRQGEWIHDYIVKNN 259
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
L+ Y G + A +IFD D +W T+I+G GE+D + LF+ M + V +
Sbjct: 139 LNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWN 198
Query: 65 PVSHIGVLTACSLGGLVEKGKKF-----FDEMQARNVKPTE 100
+ + G V KG+ F F MQ +KP+E
Sbjct: 199 SM----------ISGYVRKGRFFEAMELFSRMQEEGIKPSE 229
>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
Length = 566
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A +FDR+P+K+ ASW +I YG G +D +I LFE M+ +G++
Sbjct: 339 IDXYSKCGTVKDAWDVFDRIPIKNVASWNAMIGCYGKHGLVDSSIQLFERMQAEGMQANH 398
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
++ I VL+ACS GGLVEKG F ++A
Sbjct: 399 ITLISVLSACSHGGLVEKGLTIFRMVEA 426
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+D Y + G + K+FD + +D SW ++I GY +G L+ A+ LFE M+ +G+E
Sbjct: 168 IDMYCKCGHVGYGRKVFDGMIERDVVSWTSMICGYCNIGTLEEALVLFERMKVEGLE 224
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 9 YTRTGRIDLANKIFDRLP----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
Y R G + A +F R+ V D +W +I G+ + A LF+ M G++
Sbjct: 237 YARDGDCNGAFVLFSRMVREGLVPDLVTWNAMISGFTQSLKAVEAWRLFQDMXVAGIKPN 296
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ G+L AC L G + +GK+
Sbjct: 297 QVTVTGLLPACGLMGSIHRGKEL 319
>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
Length = 673
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y++ + A ++F+ + ++S +W +I GYGM G+ +I+LF M ++ +
Sbjct: 467 LNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNE 526
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V +L+ACS G+V GK++FD M N+ P+ HYACMV ++ +
Sbjct: 527 VVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMAR 574
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+FDR+P ++ SW +++ G G + + LF MR+D V
Sbjct: 164 VDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSE 223
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ + VL AC++ G + +G+
Sbjct: 224 YTMVSVLAACAMLGGLHQGR 243
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + AN IF R+ +KD +W +++ GY G + ++ LF MR G+
Sbjct: 366 VDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDA 425
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+S + L+AC + GK F
Sbjct: 426 ISVVNALSACVCLADLHIGKGF 447
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G++++A K F ++ K+ SW +I GYGM G A+++F MR+ G++
Sbjct: 338 VDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNY 397
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ I VL ACS GL+ +G+ +++ M+ ++P HY CMV LL
Sbjct: 398 ITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLL 443
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 6 LDFYTRTGRIDL--ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG--V 61
+D Y + G DL A K+FD + +D SW T+I Y G A+ L+ M G V
Sbjct: 234 IDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDV 292
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ VL AC+ G ++ GK+ +++
Sbjct: 293 RCNAVTLSAVLLACAHAGAIQTGKRIHNQV 322
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ + K+F +PVKD +W ++I+G G A++LF M G++
Sbjct: 255 VDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNE 314
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++ IGVL AC+ GLV GKK+F M V P HY CMV LL
Sbjct: 315 ITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLL 360
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y G + A K+FD + +D SW T+I GY + G++ +A +F+ R+
Sbjct: 123 LAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDA---- 178
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
S +++A + G ++ + + EM+ V P
Sbjct: 179 FSWSSMISAYAKGRCSKEALELWREMRVAGVAP 211
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A K+F+ + D + W ++I G + G AI +F M + V
Sbjct: 196 IDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDS 255
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IG+LTACS GLVE+G+++FD M+ +++P HY MV LL
Sbjct: 256 ITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLL 301
>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
Length = 562
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A K+F+ + D + W ++I G + G AI +F M + V
Sbjct: 235 IDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDS 294
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IG+LTACS GLVE+G+++FD M+ +++P HY MV LL
Sbjct: 295 ITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLL 340
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ A+ +F R+P +D SW T++ G G+ A+ +F+ M+ GV
Sbjct: 309 LDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNH 368
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL ACS GLVE G +F M+ ++P H+ CMV LL
Sbjct: 369 VTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLL 414
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D ++FD + +D W ++I G+ G+ AI LF M++ G
Sbjct: 210 IDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQ 269
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL AC+ ++E G++
Sbjct: 270 GTLTSVLRACTGMVMLEAGRQ 290
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGML-GELDVAINLFEAMREDGVEYYPV 66
Y + G +D A ++FD +PV++ +W T++ G A+ AMR DGV
Sbjct: 113 MYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAY 172
Query: 67 SHIGVLTACSLGGLV 81
+ VL AC+ G++
Sbjct: 173 TFSSVLGACTTPGML 187
>gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa]
gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa]
Length = 777
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRID A++ F+ +P+++ SW ++I GY G D A+ LF M+ G
Sbjct: 603 VDMYSKCGRIDYASRFFNLMPMRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQLPDH 662
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVL+ACS GLV++G ++F M + + P HY+CMV LL
Sbjct: 663 ITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLL 708
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID A +F + KDS SW ++I G + A+ + +MR+ G+
Sbjct: 298 INMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSN 357
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
+ I L++C+ G + G++ E
Sbjct: 358 FTLISALSSCASLGCILLGQQTHGE 382
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ LD Y++ G A +IF+ +P KD SW +I YG G+ A+ F+ M++ G
Sbjct: 447 LLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFG 506
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ V+ + VL+AC GL+++G KFF +M+++ ++P HY+CM+ +L
Sbjct: 507 LKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDIL 557
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 20 KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79
++FD +P +D ASW T+I + GE + A+ LF M G E VS ++ACS
Sbjct: 163 QVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLL 222
Query: 80 LVEKGKK 86
+E+GK+
Sbjct: 223 WLERGKE 229
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +LA +F + + SW +I Y +G A+ +++ M GV+
Sbjct: 351 IDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDV 410
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ VL ACS +EKGK+
Sbjct: 411 VTFTSVLPACSQLAALEKGKQ 431
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++A ++F ++P K +W ++I GY G+ + + M +G
Sbjct: 250 VDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQ 309
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
+ +L ACS + G KF R+V + + C
Sbjct: 310 TTLTSILMACSRSRNLLHG-KFIHGYVIRSVVNADIYVNC 348
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A+++F+ + K +SW +I G+ M G D + +LF MR+ G++
Sbjct: 411 IDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDD 470
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M Q + P HY CM+ LL
Sbjct: 471 ITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLL 516
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A K+FD +PVKD SW +I GY G A+ LF+ M + V +
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 69 IGVLTACSLGGLVEKGKK 86
+ V++AC+ G +E G++
Sbjct: 270 VTVVSACAQSGSIELGRQ 287
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A +F+RLP KD SW TLI GY + A+ LF+ M G
Sbjct: 303 IVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 362
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G ++ G+
Sbjct: 363 ETPNDVTMLSILPACAHLGAIDIGR 387
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR++ A+K+FD+ P +D S+ LI GY G ++ A LF+ + V
Sbjct: 176 ISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV---- 231
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS +++ + G ++ + F +M NV+P E+
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDES 267
>gi|357111278|ref|XP_003557441.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Brachypodium distachyon]
Length = 551
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++LA ++FDR+P +D SW +IL G + ++ LF+ M R +
Sbjct: 217 VDLYGKCGAVELARQVFDRMPERDITSWNVMILTLANHGRVRESVELFDRMARAEKFVPN 276
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL+AC+ GG+VE+G+++F M + ++P HY CMV +L +
Sbjct: 277 AITFVAVLSACNHGGMVEEGRRYFQMMVSEYGIRPRIEHYGCMVDILAR 325
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ AN F R+ KD SW T++ G G A+ LFE+M+E G
Sbjct: 293 IDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNY 352
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL ACS GLVEKG +F M+ V P HY C++ LL
Sbjct: 353 ITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLL 398
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ +D A +FD +P +D W ++I G+ + + A+NLF+ M+ G
Sbjct: 194 IDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQ 253
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL AC+ L+E G++
Sbjct: 254 ATLTSVLRACTGLALLELGRQ 274
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F+ +P ++S +W +I G + G+ AI+ F M G+
Sbjct: 430 VDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDE 489
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IGVL+AC GGLV++G+ +F +M ++ + P HY+C+V LL
Sbjct: 490 ITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLL 535
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I+ A +F+ + K SW T+++GY G L+ A+ LF M E V
Sbjct: 298 MDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV---- 353
Query: 66 VSHIGVLTACSLGGLVEKGKK-----FFDEMQARNVKP 98
VL +GG V+ + F EMQA +V P
Sbjct: 354 -----VLWNALIGGFVQAKRSKEALALFHEMQASSVAP 386
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + A K+FD V+D SW ++I GY G D A +L+ M E V V+ IGV+
Sbjct: 204 GELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVV 263
Query: 73 TACSLGGLVEKGKKFFDEMQARNVKPT 99
+A + + G+K ++ + T
Sbjct: 264 SASAQLENLALGRKLHQSIEEMGLNLT 290
>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
(PID:g473874) [Arabidopsis thaliana]
Length = 597
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ LD Y++ G A +IF+ +P KD SW +I YG G+ A+ F+ M++ G
Sbjct: 353 LLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFG 412
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ V+ + VL+AC GL+++G KFF +M+++ ++P HY+CM+ +L
Sbjct: 413 LKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDIL 463
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++A ++F ++P K +W ++I GY G+ + + M +G
Sbjct: 183 VDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQ 242
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ +L ACS + GK
Sbjct: 243 TTLTSILMACSRSRNLLHGK 262
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 16 DLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75
+LA +F + + SW +I Y +G A+ +++ M GV+ V+ VL AC
Sbjct: 267 NLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPAC 326
Query: 76 SLGGLVEKGKKF 87
S +EKGK+
Sbjct: 327 SQLAALEKGKQI 338
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 30 SASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKF 87
SASW T+I + GE + A+ LF M G E VS ++ACS +E+GK+
Sbjct: 106 SASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEI 163
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y ++G + + ++F ++P ++ +W +I G G + +I LFE M G+
Sbjct: 554 DMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEH 613
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117
+ + +L ACS GGLVE+ +FD+MQA + P E HY CMV +L + + A
Sbjct: 614 TFLALLFACSHGGLVEQAIHYFDKMQALGISPKEKHYTCMVDVLARAGRLA 664
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y+ +G +D A ++ D +P ++ SW TLI + G A+ L+ M DG
Sbjct: 320 LDVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNI 379
Query: 66 VSHIGVLTACS 76
VL+AC+
Sbjct: 380 SCFSSVLSACA 390
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G A K+FD + VKD SW L+ Y G+LD A + +AM E
Sbjct: 289 ITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERN----E 344
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
VS ++ G + K + +M A +P
Sbjct: 345 VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPN 378
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+ G++ A +F ++P ++ ASW T+I GY + A+ F AM G ++
Sbjct: 455 YSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITF 514
Query: 69 IGVLTACS 76
VL AC+
Sbjct: 515 SSVLLACA 522
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+D Y + + A IFD LP K+ W +L+ GY G++ A+ LF+ M
Sbjct: 421 IDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKM 471
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ + K F + K+ SW T++ Y G + A++LF +M+E+ ++
Sbjct: 646 VDMYAKCGMIESSKKCFIEIRNKNMVSWNTMLSAYAAHGLANCAVSLFLSMQENELKPDS 705
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
VS + VL+AC GL E+GK+ F EM+ R+ ++ HYACMV LL K
Sbjct: 706 VSFLSVLSACRHAGLAEEGKRIFKEMEERHKIEAKVEHYACMVDLLGK 753
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G K F+RLP+KD+ ++ L GY +G+ A ++++ M+ GV
Sbjct: 443 ISMYAKCGLFSPTLKAFERLPIKDAIAFNALAQGYTQIGDASKAFDVYKNMKLHGVCPDS 502
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ +G+L C+L +G + ++
Sbjct: 503 GTMVGMLQTCALCSDYARGSCVYGQI 528
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A ++FD++PVKD +W T++ G G A+ LF M V+
Sbjct: 142 VEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDH 201
Query: 66 VSHIGVLTACS 76
VS ++ A S
Sbjct: 202 VSLYNLIPAVS 212
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G ++LA ++F ++ +D SW +I + G+ D A++LF M +
Sbjct: 342 INMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNA 401
Query: 66 VSHIGVLTACS 76
V+ VL C+
Sbjct: 402 VTLTSVLQGCA 412
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + + A +F+ + KD +SW T++ Y G + + LF+ MR V
Sbjct: 241 IDMYCKCADLYAAECVFEEVFSKDESSWGTMMAAYAHNGSFEEVLELFDVMRNYDVRMNK 300
Query: 66 VSHIGVLTACSLGGLVEKG 84
V+ L A + G +EKG
Sbjct: 301 VAAASALQAAAYVGNLEKG 319
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++F + K+ +W T+I G M G A+ LF M GV+
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IG L AC+ GLV+KG++ FD M + +KP HY CMV LL +
Sbjct: 445 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLAR 492
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+ A +FD +P +++ SW ++ GY G+ A+ LF M+ DGV
Sbjct: 287 YARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVL 346
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
+GVL AC+ G++E+GK ++A N++ T
Sbjct: 347 VGVLAACAQLGVLEQGKWVHGYLKANNIRIT 377
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G I A KIFDRL +D SW +L+ Y G A+ FE MR G+
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+S + VLTACS GL+++G +++ M+ + P HY +V LL
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLL 408
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YTR G +D A +FD L ++ SW LI G+ + A+ LF+ M DG
Sbjct: 203 LDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSH 262
Query: 66 VSHIGVLTACSLGGLVEKGK 85
S+ + ACS G +E+GK
Sbjct: 263 FSYASLFGACSSTGFLEQGK 282
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
L+ Y + G ++ A K+F+++P +D +W TLI GY A+ F M
Sbjct: 102 LNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQM 152
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++F + K+ +W T+I G M G A+ LF M GV+
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IG L AC+ GLV+KG++ FD M + +KP HY CMV LL +
Sbjct: 445 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLAR 492
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+ A +FD +P +++ SW ++ GY G+ A+ LF M+ DGV
Sbjct: 287 YARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVL 346
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
+GVL AC+ G++E+GK ++A N++ T
Sbjct: 347 VGVLAACAQLGVLEQGKWVHGYLKANNIRIT 377
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G+++LA ++F + + SW ++I+G+ G AI LFE MR G +
Sbjct: 246 IDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDA 305
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ GVLTACS GL E G +++D M V HY C+V LL
Sbjct: 306 VTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLL 351
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G +D A ++FD +P D SW LI G+ G D AI+ F AM DGVE ++ +
Sbjct: 150 RNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVA 209
Query: 71 VLTACS 76
V++AC+
Sbjct: 210 VVSACA 215
>gi|334186610|ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|223635634|sp|O23491.2|PP315_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g16470
gi|332658358|gb|AEE83758.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 501
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++FD+L ++ +W +LI GYG G++ + FE M+E+G P
Sbjct: 251 VDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNP 310
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
V+ + VLTAC+ GGLV+KG + F M+ ++P HYA MV
Sbjct: 311 VTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMV 353
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y +G + A +F L ++D W +I GY G + ++ MR++ +
Sbjct: 150 LILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQ 209
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
+ V ACS +E GK+ M R +K
Sbjct: 210 YTFASVFRACSALDRLEHGKRAHAVMIKRCIKSN 243
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++GR+ A +F + KD SW +LI GY + G A+ LFE M G+
Sbjct: 496 LTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDE 555
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ G+L+AC+ GG V++G F M + ++KP HYAC++ LL
Sbjct: 556 VTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLL 601
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y ++GR+D AN+IF ++ V+DS W ++I GY G D A+ LF+ M V
Sbjct: 333 INGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKDM 388
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS ++ A + G ++K + F+EMQ RNV
Sbjct: 389 VSWNTMIAAYAQAGQMDKALEMFNEMQERNV 419
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT+ G++ L + F+ + ++ SW ++ GY +G+LD A F+ + V
Sbjct: 178 LSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNV---- 233
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
VS + +L+ + G + + + F+EM +N+ + M+ ++ NQ
Sbjct: 234 VSWVTMLSGFAHYGRMTEARNLFNEMPTKNL----VSWNAMIGAYVRENQ 279
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R +ID A K+F +P KDS SW +I GY +G+L A + M P +
Sbjct: 274 YVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLM--------PYKN 325
Query: 69 IGVLTACSLG----GLVEKGKKFFDEMQARN 95
I TA G G +++ + F ++ R+
Sbjct: 326 IAAQTAMINGYLQSGRMDEANEIFSQISVRD 356
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM--REDGVEYYPV 66
Y ++ A ++FDR+ +D SW +I Y +GEL+ A LF + ++D V
Sbjct: 87 YLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQD-----TV 141
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ + L + KK FDEM +NV
Sbjct: 142 CRNALIAGYAKKRLFREAKKLFDEMLVKNV 171
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GRI A ++FD +P ++ SW ++I GY ++ A LF+ M + + + +
Sbjct: 56 YAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTL-- 113
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116
++T + G +EK ++ F N+ P + C L+ Y +K
Sbjct: 114 --MITCYTRIGELEKARELF------NLLPDKQDTVCRNALIAGYAKK 153
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
Y + G++D A ++F+ + ++ SW +LI GY G A+N F M++ G
Sbjct: 398 YAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQG 449
>gi|326532424|dbj|BAK05141.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRI + +IFD +P +D SW T+I GYG+ G A LF M+ E
Sbjct: 83 IDMYAKCGRIAFSRQIFDAMPSRDIVSWNTMIAGYGIHGLGKEATALFLDMKNHACEPDG 142
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ I +++ACS GLV +GK +F M Q + P HY MV LL +
Sbjct: 143 VTFICLISACSHSGLVTEGKHWFHMMAQKYGITPRMEHYISMVDLLAR 190
>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
Length = 1134
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A K F + +KD SW +I GYG G A+++F M +E
Sbjct: 718 VDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDE 777
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE-MQARNVKPTETHYACMVYLL 110
V ++ VL+ACS G++++G++ F + ++ + +KP HYAC+V LL
Sbjct: 778 VCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLL 823
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +A K+FD +P ++ SW L+ G+ + G+L+ +++LF M G+
Sbjct: 411 IDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNE 470
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ L AC L +EKG
Sbjct: 471 FTFSTNLKACGLLNALEKG 489
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRI+ A K+F + + SW +I GY G A+ F M+E ++ P
Sbjct: 512 VDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERP 571
Query: 66 --VSHIGVLTACSLGGLVEKGKK 86
+ +L ACS G++ GK+
Sbjct: 572 DEFTLTSLLKACSSTGMIYAGKQ 594
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE--DGVEY 63
+D Y + G + A K FD++ K SW +LILGY G+ A+ LF+ ++E ++
Sbjct: 617 VDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDS 676
Query: 64 YPVSH-IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +S IGV + L+++GK +MQA VK
Sbjct: 677 FVLSSIIGVFADFA---LLQQGK----QMQALVVK 704
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +IFD + +D SW T+I G G G+ D A + M E GV+
Sbjct: 288 IDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNE 347
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+ +G+L+ACS GLV+KG + F M Q + P HY C++ LL +
Sbjct: 348 VTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSR 395
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + A ++FD +P++D SW T++ GY + G+L+ A +F+ M E V +
Sbjct: 155 VDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWN 214
Query: 66 VSHIGVLTACSLGGLVEKGK-----KFFDEMQ 92
+GG V+ GK + F EMQ
Sbjct: 215 A---------MIGGYVQNGKYSDAIEVFHEMQ 237
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYYPVS 67
Y G ++ A ++FD++ +D SW +I GY G+ AI +F M++ GV V+
Sbjct: 189 YCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVT 248
Query: 68 HIGVLTACSLGGLVEKGK 85
+ VL+AC+ G ++ G+
Sbjct: 249 LVSVLSACAHVGALDFGR 266
>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Glycine max]
Length = 611
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A ++F R+ ++ +W +I G+ G + LFE M ++GV
Sbjct: 399 VDLYAKCGSVDFAYRLFSRMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDW 458
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+S + VL ACS GLV++G+++FD M+ ++P HY CM+ +L
Sbjct: 459 ISFVNVLFACSHNGLVDQGRRYFDLMRREYGIRPGVVHYTCMIDIL 504
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77
A +FD LP KD +W ++I G+ + A++LF M +E + +L ACS
Sbjct: 108 ARALFDALPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQ 167
Query: 78 GGLVEKGKKFFDEMQARNVKPTETHYAC 105
+ GK + R AC
Sbjct: 168 LENLHLGKTLHAVVFIRGFHSNNNVVAC 195
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED--GVEY 63
+D Y R+ +D A K+FD LP D W +I A+ +F AM + G+E
Sbjct: 198 IDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHDGGLGLEV 257
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
+ +L AC G + G++
Sbjct: 258 DGFTFGTLLNACGNLGWLRMGRE 280
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A+++F+ LP K +SW +I G M G+ + AI LF+ M + V
Sbjct: 294 IDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDG 353
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + VL+AC+ GLVE+GK +F M + +KP H+ CMV LL
Sbjct: 354 ITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLL 399
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G +D A ++F+ +P ++S SW +I Y L A LF+ MR + V
Sbjct: 196 YSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVA 255
Query: 69 IGVLTACSLGGLVEKGK 85
+L+AC+ G +E+GK
Sbjct: 256 ASMLSACTGLGALEQGK 272
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y ++ A ++FD +P +D SW +LI GY G +D A +FE M E
Sbjct: 162 IHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERN----S 217
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS ++ A + + FD M+ NV
Sbjct: 218 VSWNAMIAAYVQSNRLHEAFALFDRMRLENV 248
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +++A +IF ++ K+ W ++ Y M G+ AI+L+ M E GV+
Sbjct: 542 IDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDH 601
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ I +L ACS GGLV++G K+F+++++ N+ PT HY CMV LL
Sbjct: 602 VTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLL 647
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G++D A + F++LP K +ASW +++ G+ G +D A + F + E +
Sbjct: 410 LDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDI---- 465
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++ A L + + F +MQ+ NVKP +T
Sbjct: 466 VSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKT 501
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++ +ID A ++FD++ + SW T++ GY G ++ LF+ MR + V V+
Sbjct: 312 YVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVAL 371
Query: 69 IGVLTAC 75
+ VL+AC
Sbjct: 372 VTVLSAC 378
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD + R+G +D A F+++P KD SW T++ Y + + +F M+ V+
Sbjct: 441 LDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDK 500
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ I +L++C+ G + G
Sbjct: 501 TTLISLLSSCAKVGALNHG 519
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK--DSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y++ G++D A+ + R D W TL+ GY ++D A LF+ M E +
Sbjct: 276 VDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSL-- 333
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS +++ GG + + F +M+ NV P E
Sbjct: 334 --VSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDE 368
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 45/82 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G++ ++F+++ +D SW T+I Y + G A++LF+ M GV
Sbjct: 175 MGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDE 234
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ + +++ C+ +E GK+
Sbjct: 235 ITMVSLVSTCAKLKDLEMGKRL 256
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--V 66
Y + G I +A ++FD +P ++ +W +I G G G +D A+ LFE M+++GV P V
Sbjct: 264 YAKNGEIAMARRLFDEMPERNVVTWNAMICGLGAYGYVDDALGLFEKMKKEGV-VVPNGV 322
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
+ +GVL+AC GL++ G++ F M++ ++P HY C+V LL
Sbjct: 323 TFVGVLSACCHAGLIDVGREIFRSMKSVYGIEPKIEHYGCLVDLL 367
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+ +G A ++FD P K S+ W T++ GY + A+ LFE M +G E +
Sbjct: 161 YSVSGHCVSARQVFDETPEKISSLWTTMVCGYAQNFCSNEALRLFEDMVGEGFEPGGATL 220
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
VL+AC+ G +E G++ + M+ + V
Sbjct: 221 ASVLSACARSGCLELGERIHEFMKVKGV 248
>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y ++G I A KIFDRL +D SW +L+ Y G A+ FE MR G+
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNE 363
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+S + VLTACS GL+++G +++ M+ + P HY +V LL
Sbjct: 364 ISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLL 408
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YTR G +D A +FD L ++ SW LI G+ + A+ LF+ M DG
Sbjct: 203 LDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSH 262
Query: 66 VSHIGVLTACSLGGLVEKGK 85
S+ + ACS G +E+GK
Sbjct: 263 FSYASLFGACSSTGFLEQGK 282
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
L+ Y + G ++ A K+F+++P +D +W TLI GY A+ F M
Sbjct: 102 LNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQM 152
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ++ A K+F +P K+ SW ++I GY G A+ LF+ M G+
Sbjct: 491 IDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTA 550
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +G+L ACS GLVE+G+ F++ M + P+ H CMV LL
Sbjct: 551 VTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLL 596
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 46/81 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ I+ + F + ++ S+ LI GY ++G+ + A+ ++ ++ +G+E
Sbjct: 289 VDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDS 348
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +G+ ++CS+ V +G +
Sbjct: 349 FTFVGLFSSCSVSSTVAEGAQ 369
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +D+A FD++ KD +W T+I GY + AI LF M +G + +
Sbjct: 191 YCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTF 250
Query: 69 IGVLTA 74
VL A
Sbjct: 251 CCVLKA 256
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ Y++ RI A +FD +P +D SW ++I GY G + A LF +M
Sbjct: 83 ISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSM 133
>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1067
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRID A++ F+ +P ++ SW ++I GY G +++LF M+ G
Sbjct: 736 VDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDH 795
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GLV +G FD M + + P H++CMV LL
Sbjct: 796 VTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLL 841
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G + K+FD +P+++ SW LI GY + A LF M DG
Sbjct: 115 INIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNH 174
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+ AC G E G KF
Sbjct: 175 YAFGSVIRACQECG--EYGLKF 194
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A +F + KDS +W ++I G + A+ F+ MR E YP
Sbjct: 431 INMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRR--TELYP 488
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDE 90
+ I L++C+ G + G++ E
Sbjct: 489 SNFTMISALSSCASLGWISVGEQLHCE 515
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G I A IF ++ ++ S LI+G + A+ LF M+ D VE P S+
Sbjct: 329 FAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMK-DSVELNPNSY 387
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQA 93
+ +LTA ++E GK+ E+ A
Sbjct: 388 MIILTAFPEFHVLENGKRKGSEVHA 412
>gi|2245003|emb|CAB10423.1| hypothetical protein [Arabidopsis thaliana]
gi|7268397|emb|CAB78689.1| hypothetical protein [Arabidopsis thaliana]
Length = 459
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +++FD+L ++ +W +LI GYG G++ + FE M+E+G P
Sbjct: 209 VDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNP 268
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
V+ + VLTAC+ GGLV+KG + F M+ ++P HYA MV
Sbjct: 269 VTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMV 311
>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g26782, mitochondrial-like [Glycine max]
Length = 555
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R+++A K FD + VK+ SW ++ GYGM G A+ +F M GV+
Sbjct: 226 VDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIRSGVKPNY 285
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
++ + VL ACS G++++G +F+ M+ V+P HY CMV LL
Sbjct: 286 ITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLCMVDLL 331
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+F + KD +W T+I+G + G + A+ +F M E V
Sbjct: 324 VDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDE 383
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
+++IGVL AC +V+KGK FF M ++ +KPT THY CMV LL
Sbjct: 384 ITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLL 425
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ G +D A +FD + +D SW +I GY + A+ LF M+ V+ +
Sbjct: 226 FAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTM 285
Query: 69 IGVLTACSLGGLVEKGK 85
+ +L AC+L G +E G+
Sbjct: 286 VSILIACALLGALELGE 302
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ A +F R+P +D SW T+I G G+ A+ +F+ M+ +GV
Sbjct: 320 LDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNR 379
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL ACS GLVE G +F M+ ++P H+ CMV LL
Sbjct: 380 ITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLL 425
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D ++FD + +D W ++I G+ G+ AI LF M++ G
Sbjct: 221 IDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQ 280
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL AC+ ++E G++
Sbjct: 281 GTLTSVLRACTGMVMLEAGRQ 301
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGML-GELDVAINLFEAMREDGVEYY 64
+ Y + G +D A ++FDR+P ++ +W T++ G + A+ AM DGV
Sbjct: 122 VSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPN 181
Query: 65 PVSHIGVLTACSLGGLV 81
+ VL AC G++
Sbjct: 182 AYTFSSVLGACGTPGVL 198
>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
Length = 639
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA ++F + K+ +W T+I G M G A+ LF M GV+
Sbjct: 178 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 237
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ IG L AC+ GLV+KG++ FD M + +KP HY CMV LL +
Sbjct: 238 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLAR 285
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 37 ILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ G+ + G+ A+ LF M+ DGV +GVL AC+ G++E+GK ++A N+
Sbjct: 108 LAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNI 167
Query: 97 KPT 99
+ T
Sbjct: 168 RIT 170
>gi|125548143|gb|EAY93965.1| hypothetical protein OsI_15743 [Oryza sativa Indica Group]
gi|125590256|gb|EAZ30606.1| hypothetical protein OsJ_14659 [Oryza sativa Japonica Group]
Length = 328
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+++A ++FD P K+ +W LI+G M G VA++ F+ M +G
Sbjct: 114 VDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDG 173
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE-THYACMVYLL 110
+ +GVL CS GLV+ ++ F EMQ + P E HY CM LL
Sbjct: 174 TTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLL 219
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR+ LA ++F+ +P +D+ SW T++ G G L+ A+ LF+ MR +G V+
Sbjct: 16 YVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVAL 75
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105
VL+ C+ G ++KG++ + + R +P Y C
Sbjct: 76 AAVLSCCAQLGALDKGQEVHEYV--RRTRPRPNVYLC 110
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88
D S L+ GY G L +A+ +FE M E VS V+ C+ G +EK + F
Sbjct: 5 DVVSHNALVHGYVKAGRLGLAVRVFEGMPERDA----VSWGTVVAGCAKAGRLEKAVRLF 60
Query: 89 DEMQARNVKPTETHYACMV 107
D M+ +P + A ++
Sbjct: 61 DRMRREGYRPDDVALAAVL 79
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A ++FDR+ K+ SW +I YG G AI+LF M +
Sbjct: 243 IDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNR 302
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +L ACS GL+E+G +FF+ M + V+P HY CMV LL
Sbjct: 303 VTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLL 348
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + ++ A ++F+R+ KD +W +I Y + ++ LF+ MRE+GV
Sbjct: 143 VDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFDRMREEGVVPDK 201
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
V+ + V+ AC+ G + + +F ++ RN
Sbjct: 202 VAMVTVVNACAKLGAMHRA-RFANDYIVRN 230
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRI+ A ++F +L D ASW +I G G A+ LFE M + GV+
Sbjct: 40 VDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQ 99
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ + VL+ CS GLV++G+ +FD M + + P HY+CMV L
Sbjct: 100 ITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLF 145
>gi|357161281|ref|XP_003579039.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Brachypodium distachyon]
Length = 698
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + KIFD + D W ++++GY G A+ L E MR G+
Sbjct: 491 IDLYCKCGNLANGCKIFDGIDKSDEVLWNSMLIGYASNGHGHKALELLELMRARGIRPTE 550
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+ +GVL+AC GLVE+G +F +MQ VKP+ HYAC+ LL++
Sbjct: 551 RTFVGVLSACCHSGLVEEGLTWFKQMQEDFYVKPSAEHYACVTDLLVR 598
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A + FD L D S L+ GY G+LD A+ L RE+G
Sbjct: 226 VDMYCKCGDLDSARRAFDGLAQADEFSVSALVYGYASRGQLDEALRLLG--REEG-NLNI 282
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
+ +++ C+ L + F M +V P YA
Sbjct: 283 LLWNSIVSGCAFACLGDDAFVLFARMMRSDVLPDSATYA 321
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y+ GRI+ A ++F R+ K SW ++++G G A+ LF M G
Sbjct: 385 VLNSMITVYSNCGRIEEAKRVFHRITSKSVISWNSMVVGLSQNGHAIDALELFCEMHHLG 444
Query: 61 V 61
V
Sbjct: 445 V 445
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR++ A+ +F + V+D +W +I G G A+ F M+ DG +
Sbjct: 412 LDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNS 471
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V++I +LTACS L+++G+ +F+EM+ N++P HY CM+ LL
Sbjct: 472 VTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLL 517
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FD++ +D ++ +LI GY G L A+ LF MR +
Sbjct: 311 IDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADN 370
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +LTAC+ G + +G+ ++ R V+
Sbjct: 371 FTMVSLLTACASLGALPQGRALHACIEQRLVE 402
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
P + Y G A + FD +PVKD+ +W T+I G LG LD A L V
Sbjct: 144 NPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNV- 202
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+S G+++ S G + F+ M + ++P E
Sbjct: 203 ---ISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEV 238
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G I A ++FD L + SW +I GY LG +DVA LF+ M + +
Sbjct: 279 IDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDL--- 335
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V+ ++T GG + + F +M+ +++
Sbjct: 336 -VTFNSLITGYIHGGRLREALLLFMQMRRHDLR 367
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y+R G + A ++FD + K+ +W +I GYGM G AI LF M DG
Sbjct: 261 MNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNN 320
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+AC+ GLV++G++ F M Q + P+ H CMV +L
Sbjct: 321 VTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDML 366
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY ++G + +A K+FD++P K +W ++I GY G A+ LF M++ GV+
Sbjct: 160 VSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDS 219
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ + +L+AC+ G + G + E ARN
Sbjct: 220 STFVSLLSACAQVGAIGLG-FWVHEYIARN 248
>gi|91805385|gb|ABE65422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK--DSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + G A +IFDR K D W +I GYG GE + AI +FE +RE+ VE
Sbjct: 410 IDMYMKCGLSSWARRIFDRFEPKPRDPVFWNVMISGYGKHGECESAIEIFELLREEKVEP 469
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ VL+ACS G VEKG + F MQ KP+ H CM+ LL
Sbjct: 470 SLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLL 517
>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 558
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G I +A K+FD +P ++ SW ++I +G+ G + A++ F+ M+ +
Sbjct: 354 IDTYARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNS 413
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +L+ACS G V++G K F+ M + + P E HYACMV LL
Sbjct: 414 VTFVSLLSACSHSGNVKEGWKQFESMTRDYGLVPEEEHYACMVDLL 459
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 2 IEPRL-DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+ P L + Y + G ++ A K+FD +PV++S W L+ GY + LF MR+ G
Sbjct: 146 VAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLFYLMRDTG 205
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKK 86
+ ++ I ++ AC G V GK+
Sbjct: 206 LALDALTLICLVKAC---GNVSAGKE 228
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + +D A K+F+ ++ W TLI G+ AI+LF M + +
Sbjct: 253 IDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNH 312
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +L +CS G + GK
Sbjct: 313 CTLAAILVSCSSLGSLRHGKS 333
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 9 YTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGEL---DVAINLFEAMRE--DGV 61
Y ++ R+D A FDR+P ++ SW T++ GY DV + L+ MR DGV
Sbjct: 49 YIQSNRLDFATASFDRIPCWKRNRHSWNTILSGYSKSKSCYYSDVLL-LYNRMRRHCDGV 107
Query: 62 EYYPVSHIGVLTACSLGGLVEKG 84
+ + + + + AC GL+E G
Sbjct: 108 DSFNL--VFAIKACVGLGLLENG 128
>gi|15227029|ref|NP_178378.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546778|sp|Q1PFA6.2|PP144_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02750
gi|2947066|gb|AAC05347.1| hypothetical protein [Arabidopsis thaliana]
gi|330250526|gb|AEC05620.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRL--PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + G A +IFDR KD W +I GYG GE + AI +FE +RE+ VE
Sbjct: 410 IDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEP 469
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ VL+ACS G VEKG + F MQ KP+ H CM+ LL
Sbjct: 470 SLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLL 517
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y + G ++ IF+ + ++ SW +LI GYGM G ++ +FE M E+G+
Sbjct: 500 MAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPN 559
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ + VL ACS GLVE+GKK F+ M NV P HYACMV LL
Sbjct: 560 IITFVSVLGACSHVGLVEQGKKLFESMVEYNVTPRAEHYACMVDLL 605
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++F +P ++ SW +I Y AI +F+ M + P
Sbjct: 397 IDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVP 456
Query: 66 --VSHIGVLTACSLGGLVEKGK 85
++ + VL AC+ + +GK
Sbjct: 457 NSITIVSVLHACAGVNALGQGK 478
>gi|297817888|ref|XP_002876827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322665|gb|EFH53086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 611
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRL--PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + G LA +IFDR KD W +I GYG GE + AI +F+ +RE+ VE
Sbjct: 408 IDMYMKCGFSLLARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFDLLREEEVEP 467
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
+ VL+ACS G VEKG + F MQ KP+ H CMV LL ++ +
Sbjct: 468 SLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMVDLLGRFGR 520
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYY 64
+ Y+R G LA ++F+++P K ++ I G G + + N+F MR+ E
Sbjct: 169 VSMYSRCGEWILAARMFEKVPHKSVVTYNAFISGLMENGVMHLVPNVFNLMRKFSSEEPN 228
Query: 65 PVSHIGVLTACS----------LGGLVEKGKKFFDEM 91
V+ + +TAC+ L GLV K + FD M
Sbjct: 229 DVTFVNAITACASLLNLQYGRQLHGLVMKTEFQFDTM 265
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y++ A +F L ++ SW ++I G + G+ + A+ LFE + +G++
Sbjct: 271 IDMYSKCRCWKSAYSVFTELKDTRNLISWNSVISGMMLNGQHETAVELFEQLDSEGLKPD 330
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+ +++ S G V + KFF+ M + + P+ C+ LL
Sbjct: 331 SATWNSLISGFSQLGKVVEAFKFFERMLSVVMVPS---LKCLTSLL 373
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
M +D Y + G+ ++A FD + K+ SW +I GYGM G A+++F M G
Sbjct: 331 MATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAG 390
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ ++ I VL ACS G +E+G ++F+ M NV+P HY CMV LL
Sbjct: 391 VKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLL 441
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
LD Y + G + L+ K+FD + KD SW ++I Y G A +F M + G +Y
Sbjct: 234 LDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYN 293
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ +L AC+ G + G D++
Sbjct: 294 EVTLSTLLLACAHEGALRVGMCLHDQV 320
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM--------- 56
+D Y++ G++ A +FD +P ++ +W +LI GY + A+ +F+
Sbjct: 124 IDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNG 183
Query: 57 REDGVEYYPVSHIGVLTACS 76
E G V+ I VL+ACS
Sbjct: 184 EEVGTSVDSVAMISVLSACS 203
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F+ P+K +SW T+ILG M G + AI LF + +
Sbjct: 299 IDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDD 358
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMV 107
V+ +GVLTAC+ GLV+K K++F M + ++P+ HY+CMV
Sbjct: 359 VTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMV 401
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 52/88 (59%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ G +D + K+FD +P++++ SW ++I GY G L A++LF M+E+ ++ + +
Sbjct: 202 AKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMV 261
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNVK 97
+L A + G +++G+ D ++ N +
Sbjct: 262 SLLNASARLGALKQGEWIHDYIRKNNFE 289
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I K F ++P +D +W +I G+ + G+ LFE M DG+
Sbjct: 261 IDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNG 320
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V + +L+ACS G VE+GK +F++M ++P+ HY CMV LL
Sbjct: 321 VIFVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLL 366
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G +D A +FD++ KD ASW +I G G A+ LFE M +
Sbjct: 163 YLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNESAL 222
Query: 69 IGVLTACSLGGLVEKGK 85
+ +L+AC+ G + +G+
Sbjct: 223 VSLLSACAHLGALHQGR 239
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ YT +G I A + +++ + ++I GY G +D A +F+ M+ V +
Sbjct: 129 IHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWS 188
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++T C+ G+ + F++M + P E+
Sbjct: 189 A----IITGCTKNGMHTEALALFEDMMVSHTLPNES 220
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A +F + K+ SW +LI YG+ G A+ ++E M GV+
Sbjct: 249 IDMYGKCGQVDGAQAVFASMEEKNVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVKPNC 308
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +L++CS GLV G++ F+ M + V+PT HYACMV LL
Sbjct: 309 VTFVSILSSCSHSGLVSDGRRIFESMRKVHAVEPTADHYACMVDLL 354
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEA--MREDGVEY 63
LD Y +TG + A ++FD +P +D+ +W ++ GY G + + LF + G+
Sbjct: 145 LDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGYARAGRSEETLELFRKAQIESAGMAR 204
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEM 91
+ VL C+ G + KG++ M
Sbjct: 205 DLRAVPSVLNVCADEGQLMKGREIHGRM 232
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G IDLA + F +D +++ I G M G + A+ LFE M+ +G+
Sbjct: 266 IDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDG 325
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
VS+I VL ACS G VEKG +F M ++P HYACMV LL
Sbjct: 326 VSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLL 371
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D R G I A +F ++ ++ SW +I GY G+ A+ LF M+ E
Sbjct: 165 IDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNS 224
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ VL+ACS G ++ G
Sbjct: 225 AILVSVLSACSQLGALDHG 243
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
FY+ GR++ A +FD D SW ++I G G + A++LF M E +S
Sbjct: 136 FYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERN----DIS 191
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+++ + G ++ F EMQ + +P
Sbjct: 192 WNMMISGYAQNGQPKEALALFREMQMLDQEPNSA 225
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ + ++F R+ +D+ +W +I G G+ A+ LF+ M+ V+
Sbjct: 323 IDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDG 382
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+AC GGLV++G+K F M + ++P HY+C+V LL
Sbjct: 383 VTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLL 428
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ ++ A K+F+++P ++ SW L+ GYG+ G+LD A LF +E + +
Sbjct: 191 LDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWT 250
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
++ AC G E+ F +MQ + V+P
Sbjct: 251 ----AMINACVQHGCFEEALTLFRDMQMQRVEP 279
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT GR+D+A K+FD +P + W ++ Y G A+ L E M GV
Sbjct: 91 MEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDR 150
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
V+ + +TACS + G++
Sbjct: 151 VTLVTAVTACSRARDLSLGRRI 172
>gi|116830405|gb|ABK28160.1| unknown [Arabidopsis thaliana]
Length = 614
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRL--PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + G A +IFDR KD W +I GYG GE + AI +FE +RE+ VE
Sbjct: 410 IDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEP 469
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ VL+ACS G VEKG + F MQ KP+ H CM+ LL
Sbjct: 470 SLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLL 517
>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ++ A + FD + KD SW LI GYG G+ D+A+ ++ G+E
Sbjct: 490 VDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNH 549
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V + VL++CS G+V++G K F M + V+P H AC+V LL +
Sbjct: 550 VIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCR 597
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
+ Y + G +D + IF+R+ +D SW +I GY +L A+ LFE M+ V+
Sbjct: 388 ITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVD 447
Query: 65 PVSHIGVLTACSLGGLVEKGK 85
+ + +L ACS G + GK
Sbjct: 448 SFTVVSLLQACSSAGALPVGK 468
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ L+ Y + + A +FD++ +D SW T+I GY +G + + L MR DG
Sbjct: 181 VMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDG 240
Query: 61 V 61
+
Sbjct: 241 L 241
>gi|302801049|ref|XP_002982281.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
gi|300149873|gb|EFJ16526.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
Length = 515
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G D A+ +F++ KD + W LI Y G + A+ +F +R+DG+E ++
Sbjct: 325 YGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTF 384
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+ +L+ACS GL+E+G +FF M ++P HY+C+V LL +
Sbjct: 385 VAMLSACSHVGLIEEGCEFFASMAELGIEPNMEHYSCLVDLLAR 428
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A +FD + +D SW +I Y + + AI+L AM+ +G+
Sbjct: 145 FNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDK 204
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103
+ +L ACS + G++ E+ ++ H+
Sbjct: 205 ATFASLLNACSDPNRLVDGRQIHSEIFDNIFSNSQQHH 242
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A K+F+R+ + W ++I Y + A++LF M+ +GV
Sbjct: 45 VNMYAKCGTVGEARKVFERINNRSRILWNSMITAYQERDPHE-ALHLFREMQPEGVSPDR 103
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + VL AC +E G+
Sbjct: 104 ITFMTVLNACVNAADLENGR 123
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++FD + + +SW +I G+ M G + A ++F MR++G+E
Sbjct: 380 IDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDD 439
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK--PTETHYACMVYL 109
++ +G+L+ACS G+++ G+ F M R+ K P HY CM+ L
Sbjct: 440 ITFVGLLSACSHSGMLDLGRHIFRSM-TRDYKLMPKLEHYGCMIDL 484
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A+K+FD +PVKD SW I GY G A+ LF+ M + V +
Sbjct: 179 YASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238
Query: 69 IGVLTACSLGGLVEKGKK 86
+ VL+AC+ G +E G++
Sbjct: 239 VTVLSACAQSGSIELGRQ 256
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A +F L KD SW TLI GY + A+ LF+ M G
Sbjct: 272 IVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSG 331
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
+ V+ + +L+AC+ G ++ G+
Sbjct: 332 EKPNDVTMLSILSACAHLGAIDIGR 356
>gi|297728355|ref|NP_001176541.1| Os11g0483950 [Oryza sativa Japonica Group]
gi|77550893|gb|ABA93690.1| pentatricopeptide repeat-containing protein, putative [Oryza sativa
Japonica Group]
gi|125577152|gb|EAZ18374.1| hypothetical protein OsJ_33904 [Oryza sativa Japonica Group]
gi|255680094|dbj|BAH95269.1| Os11g0483950 [Oryza sativa Japonica Group]
Length = 478
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG ++ A +FDR+P + +A+W LI G G +VA+ F MR DGV
Sbjct: 271 VDMYAKTGAMEEATAVFDRMPERQTATWNALITGLAHHGHGEVALATFHRMRRDGVPPNG 330
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ +GVL+A G +++ ++ F M+ V PT HY CMV LL
Sbjct: 331 ATLVGVLSAYGCTGRLDEARRVFASMEKDFAVAPTIQHYGCMVDLL 376
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+ G + LA ++FD LP + + T++ GY G + A+ FE M DG+E + +
Sbjct: 168 YSLAGLVPLARRVFDGLPERSAVVCTTMVSGYAQNGMHEDAMRSFEEMVGDGIEPHGAAL 227
Query: 69 IGVLTACSLGGL--VEKGKKFFDEMQARNV 96
VL++C+ G +E G++ + M++R V
Sbjct: 228 ASVLSSCARSGSRGLEMGRRVHELMESRRV 257
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ + ++F R+ +D+ +W +I G G+ A+ LF+ M+ V+
Sbjct: 323 IDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDG 382
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+AC GGLV++G+K F M + ++P HY+C+V LL
Sbjct: 383 VTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLL 428
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ ++ A K+F+++P ++ SW L+ GYG+ G+LD A LF +E + +
Sbjct: 191 LDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWT 250
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
++ AC G E+ F +MQ + V+P
Sbjct: 251 ----AMINACVQHGCFEEALTLFRDMQMQRVEP 279
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT GR+D+A K+FD +P + W ++ Y G A+ L E M GV
Sbjct: 91 MEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDR 150
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
V+ + +TACS + G++
Sbjct: 151 VTLVTAVTACSRARDLSLGRRI 172
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRL-PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L+ Y + G+ID+A K+F+ + +++ SW ++I+G + GE + L++ M +G
Sbjct: 258 LEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPD 317
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +G+L AC+ GG+VEKG+ F M N+ P HY CMV LL + Q
Sbjct: 318 DVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQ 369
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
LD YT+ G ++LA K+FD++PV+ +W ++ G+ G++DVA+ LF M V
Sbjct: 125 LDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNV 180
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
+ R G +D+A ++F +P ++ SW T+I GY + A+ LF M +E G+ V+
Sbjct: 159 HARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVT 218
Query: 68 HIGVLTACSLGGLVEKGKK 86
+ A + G +E G++
Sbjct: 219 LASIFPAFANLGALEIGQR 237
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y +TG + A K+F+ L KD+ +W +I+G G + A+++F+ M+E+G P
Sbjct: 341 VNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEG-NATP 399
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++++GVL ACS GLVE+G+++F EM+ ++PT HY CMV +L
Sbjct: 400 DGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDIL 447
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD +P ++ SW ++I GY G+ + A+ +F M + G+
Sbjct: 240 IDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDK 299
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ V+ A + G + G+
Sbjct: 300 VTFFSVIRASMIQGCSQLGQ 319
>gi|218185745|gb|EEC68172.1| hypothetical protein OsI_36118 [Oryza sativa Indica Group]
Length = 443
Score = 79.0 bits (193), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG ++ A +FDR+P + +A+W LI G G +VA+ F MR DGV
Sbjct: 236 VDMYAKTGAMEEATAVFDRMPERQTATWNALITGLAHHGHGEVALATFHRMRRDGVPPNG 295
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ +GVL+A G +++ ++ F M+ V PT HY CMV LL
Sbjct: 296 ATLVGVLSAYGCTGRLDEARRVFASMEKDFAVAPTIQHYGCMVDLL 341
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ AN +F R+ KD SW T+I G G A+ LFE+M+ G++
Sbjct: 204 LDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNY 263
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL ACS GLVE+G +F M+ + P HY CM+ LL
Sbjct: 264 VTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLL 309
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+R G ++ A ++FD + D W ++I G+ + D A+ LF+ M+ G
Sbjct: 105 IDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQ 164
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL AC+ L+E G++
Sbjct: 165 TTLTSVLRACTGLALLELGRQ 185
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I ++ Y + G + A +FD++P ++ SW T+I Y D A+ M +G
Sbjct: 2 LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61
Query: 61 VEYYPVSHIGVLTAC 75
V ++ VL AC
Sbjct: 62 VRPNMFTYSSVLRAC 76
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y +TG + A KIF L KD W ++I G M G + A+++F+ M+ED P
Sbjct: 355 LDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDS-SLVP 413
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+++IGVL ACS GLVE+ KK F M + + P HY CMV LL
Sbjct: 414 DHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLL 461
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + GR+ +A +F+++P ++ SW ++I Y A++LF M GV
Sbjct: 254 LEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDK 313
Query: 66 VSHIGVLTACS 76
+ + VL+ C+
Sbjct: 314 ATFLSVLSVCA 324
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + K+FD +P + +W LI GY + A+ +FE M VE
Sbjct: 146 LHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNE 205
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
++ + L AC+ ++ G+ ++ P
Sbjct: 206 ITMVNALIACAHSRDIDTGRWVHQRIRKAGYDP 238
>gi|255540253|ref|XP_002511191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550306|gb|EEF51793.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY++ GR++ A +FD++P K+ SW LI GYG G+ D AI LFE M ++ +
Sbjct: 414 VDFYSKWGRVETARHVFDQMPCKNVISWNALIAGYGNHGKGDDAIELFEQMLQERIRPNH 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ + VL+ACS GL E G + F M
Sbjct: 474 VTFLAVLSACSYSGLSEHGWEIFRSM 499
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
+D Y + G I+ A+ +FD +P ++ +W T+I GY + G + A+++ MR GV
Sbjct: 313 IDMYGKCGSIEDAHCVFDEMPERNIVAWNTIIAGYALHGYSEEALDMVYEMRNSGV 368
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K FDR+ ++ SW T+I GYGM G A+ LF+ M+ ++
Sbjct: 341 IDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKAS-IKPDH 399
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL+ACS GGL+ +G + F M V P HYACMV LL
Sbjct: 400 IAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLL 445
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
Y R G D + ++F+R+P ++ SW +++ Y G + + LF M +G+
Sbjct: 145 YGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGI 197
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
+ Y R GRID+A + F + KD +W ++I Y + +L + A+ LF+ M+ G+
Sbjct: 240 MGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAY-VQADLPINALELFKQMKLLGIVPD 298
Query: 65 PVSHIGVLTACS 76
V+ + ++ A S
Sbjct: 299 SVTLLSLIHAVS 310
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R G + A IFD+L +KD SW +IL Y G A+ +F M G + ++
Sbjct: 407 YSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITF 466
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
+G+L+ACS GLV+KG+ FD M A V+P HY+C+V +L
Sbjct: 467 VGLLSACSHAGLVKKGQMLFDSMSCAYGVEPRAEHYSCLVDIL 509
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+D A ++FD++ ++ SW +L+ GY +G +D A+ LF M E V VS
Sbjct: 123 YVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNV----VSW 178
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ + G +++ + F++M +N+
Sbjct: 179 TTAVVGYAQNGFIDEARDIFNQMPEKNI 206
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G ++LA K FD +P KD A+W +I Y G + A NLF M E + VS
Sbjct: 279 ARNGMMELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNI----VSWN 334
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
++ + G ++ M N KP ET
Sbjct: 335 ALIDGYARNGPESNSLRYLILMLRSNFKPNET 366
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ID A ++F ++P ++ SW +I G L+ AI LF +M + VS
Sbjct: 216 YVENDEIDEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRN----EVSW 271
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++T + G++E +K+FD M +++
Sbjct: 272 TTLVTGLARNGMMELARKYFDHMPTKDI 299
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G++ A K+FD +P +D+ S+ ++I Y +L A LF + E V V+ ++
Sbjct: 65 GKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNV----VADSAMI 120
Query: 73 TACSLGGLVEKGKKFFDEMQARNV 96
+ G ++K ++ FD+M RNV
Sbjct: 121 SGYVRAGRLDKARQVFDQMVERNV 144
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ID A IF+++P K+ +W ++ Y E+D A LF M + + + +
Sbjct: 185 YAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNI-- 242
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN 95
+++ C + + + F+ M RN
Sbjct: 243 --MISGCINANRLNEAIQLFNSMPQRN 267
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
YT+ G ++ N +F R P KD SW +I G G+ D A+ LFE M +G E V+
Sbjct: 457 YTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTF 516
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
+ +++ACS G VE+G +F M + + P HYACMV +L + Q
Sbjct: 517 VNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQ 564
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ ++ A K+FD ++S +W ++ GY GE AI LF M G++
Sbjct: 252 VTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSE 311
Query: 66 VSHIGVLTACS 76
+ +GVL ACS
Sbjct: 312 YTIVGVLNACS 322
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K FD L +D A W +LI GY + + A+ L+ M+ G+
Sbjct: 353 VDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPND 412
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL ACS +E GK+
Sbjct: 413 PTMASVLKACSSLATLELGKQ 433
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVA---INLFEAMREDGV- 61
++FY + G++ A+ IF+ + KD SW +LI GY G + + + LF MR +
Sbjct: 58 VNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDIL 117
Query: 62 -EYYPVSHI----GVLTACSLG----GLVEKGKKFFD 89
Y ++ I L +C++G LV K F D
Sbjct: 118 PNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGD 154
>gi|293333352|ref|NP_001168668.1| uncharacterized protein LOC100382456 [Zea mays]
gi|223950067|gb|ACN29117.1| unknown [Zea mays]
Length = 602
Score = 78.6 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A KIFD +P +D A W +I G+ GE A+ LF M+ GV
Sbjct: 397 IDMYCKCGSIQRARKIFDSVPNRDLAIWSAMINGHACNGEGSEAVVLFNEMQSKGVRPDA 456
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
+ +LTACS G V++G + F M A + ++P+ HY CM+ LL K
Sbjct: 457 IVFTHILTACSHSGSVDEGLRCFHSMTAEHGIEPSVEHYMCMIDLLCK 504
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSA--SWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + GR+ A+++FD P +W +I YG +++ A+ +F AMR V
Sbjct: 91 VDMYAKCGRLPDAHRLFDETPCSSRTLVAWNCMISAYGRSSQVEEAVGVFNAMRRAEVRP 150
Query: 64 YPVSHIGVLTACS 76
+ +G+L+ C+
Sbjct: 151 SGSTVVGLLSGCA 163
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G + A ++FD L K W +++ GY G D A+ F+AM VE
Sbjct: 296 VNLYSKCGNLLAAREVFDSLQWKSVIMWTSMLNGYVECGYPDEALATFDAMLCAKVEPNK 355
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + VL+A + G +K + ++A ++
Sbjct: 356 ATVLAVLSAGANLGSANVAQKVEEHVKAMELQ 387
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L R G++D A +FDR+ K +W + Y G+ LF +MRE
Sbjct: 195 LTMLVRGGQLDSARLLFDRVENKSVVTWSAMASAYLQTGDWMEVFALFSSMRETEQPMDS 254
Query: 66 VSHIGVLTACSLGG--LVEKG 84
V ++TA L G LV KG
Sbjct: 255 VVLANLITAAMLFGNNLVAKG 275
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +FD + K+ +W +L+ GYGM G + A+ +F+ MR G +
Sbjct: 520 IDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDG 579
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS G++++G ++F+ M+ V P HYAC+V LL
Sbjct: 580 VTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLL 625
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D AN +F + VKD SW ++ GY +G + A+ LFE M+E+ ++
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
V+ ++ + GL + +M + +KP E
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
Y+R + A K+FD + V D SW ++I Y LG+ VA+ +F M E G ++
Sbjct: 172 YSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNIT 231
Query: 68 HIGVLTACSLGGLVEKGKKF 87
+ VL C+ G GK+
Sbjct: 232 LVNVLPPCASLGTHSLGKQL 251
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVK--DSASWITLILGYGMLGELDVAINLFEAMRE 58
+I +D Y + ++D A +FD L K D +W +I GY G+ + A+ L M E
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 59 DGVEYYPVSHI--GVLTACSLGGLVEKGKK 86
+ + P + L AC+ + GK+
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQ 498
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F ++P K+ SW T+I G+GM G A+NLF MR
Sbjct: 358 IDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNS 417
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS G +E+G F M + + P E HYACMV LL
Sbjct: 418 VTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLL 463
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A K+F+ + +D W +I G+ G +I++F M D V
Sbjct: 257 VDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNS 316
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
V+ ++ ACS G +++G+ M V+ +Y + + K
Sbjct: 317 VTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAK 363
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT G ++ A+K+F+ +P+K+S W +I G+ E LF MR G E P
Sbjct: 155 MNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDP 214
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
G++ AC ++GK F
Sbjct: 215 FVVEGLIQACGNVYAGKEGKTF 236
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G ++ N +F R P KD SW +I G G+ D A+ LFE M +G+E V+
Sbjct: 468 YSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTF 527
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
+ +++ACS G VE+G +F+ M + + P HYACMV LL + Q
Sbjct: 528 VNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQ 575
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ ++ A K+FD ++S +W ++ GY GE A+ LF M G++
Sbjct: 263 VTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSE 322
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ +GVL ACS +E+GK+
Sbjct: 323 YTIVGVLNACSDICYLEEGKQL 344
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K FD L +D A W +LI GY + + A+ L+ M+ G+
Sbjct: 364 VDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPND 423
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL ACS +E GK+
Sbjct: 424 PTMASVLKACSSLATLELGKQ 444
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
++FY + G++ A+ IF+ + KD SW +LI GY G + + + + RE
Sbjct: 56 VNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFRE 108
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAI---NLFEAMREDG 60
Y + G ++ K+F +P +++ +W T++ GY G ++ AI NLF +E+G
Sbjct: 163 YCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEG 217
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G ID + ++F+ + V+D SW ++ Y G AI LF+ M + G++ V+
Sbjct: 412 LYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVT 471
Query: 68 HIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
GV++ACS GLVEKG+++F+ M + P+ HY+CM+ L +
Sbjct: 472 LTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSR 517
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
+D Y + + A +FDR+ K+ SW +++GYG G A+ +F M+ G+ ++
Sbjct: 309 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDH 368
Query: 64 YPVSHIGVLTACSLGGLVEKGKKF 87
Y + ++AC+ +E+G +F
Sbjct: 369 YTLGQ--AISACANISSLEEGSQF 390
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVS 67
Y+++G + + F++LP +D +W LI GY + G + A+ + M +D V+
Sbjct: 79 YSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVT 138
Query: 68 HIGVLTACSLGGLVEKGKKFFDEM 91
+ +L S G V GK+ ++
Sbjct: 139 LMTMLKLSSSNGHVSLGKQIHGQV 162
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
P LD Y++ G I A K+F L +++ + TL+ G G ++ A+ LF M +D V
Sbjct: 175 SPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVS 234
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ ++ + G+ ++ + F EM+ +K
Sbjct: 235 WS-----AMIKGLAQNGMEKEAIECFREMKIEGLK 264
>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R+G++ A ++FD L +D ++ ++I GYGM GE A+ LFE M ++
Sbjct: 555 VDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDH 614
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ I VL+ACS GLV +G+ F++M++ + P H+ACM L
Sbjct: 615 ITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLF 660
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ Y + G++ +A +FD++P +D+ SW ++I Y +G + A LF +M + +E
Sbjct: 317 ISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIE 373
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A++IF L +D SW +I+G+ + G A++LF M E+G E P
Sbjct: 373 IDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEG-EVMP 431
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +GVLT+CS GGLVE+G F M + + P HY CMV LL
Sbjct: 432 NEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLL 479
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
+D Y R GR+D A ++FDRL VKD+ + T+I Y GE+++A LFE M E
Sbjct: 146 VDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPE 198
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G ++ A K+FD +P ++ W ++I GY +G+ A+ LF M+ GV+ +
Sbjct: 274 MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDAT 333
Query: 68 HIGVLTACSLGGLVEKGK 85
V+++C G ++ G+
Sbjct: 334 IATVVSSCGQMGALDLGR 351
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 9 YTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y+ G +D A +F+ V + +I G+ G +D A ++F+ MR+ V + V
Sbjct: 211 YSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVM 270
Query: 68 HIGVLTA-CSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
IGV+ A C GLVE +K FD M RNV C ++ Y Q
Sbjct: 271 -IGVMYAKC---GLVEDARKVFDAMPERNV-------VCWTSMISGYTQ 308
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLI-LGYGMLGELDVAINLFEAMREDGVEYYPVS 67
+ +TG +D A +FD + +D A+W +I + Y G ++ A +F+AM E V V
Sbjct: 243 FAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNV----VC 298
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
+++ + G ++ K F +MQ VK + A +V
Sbjct: 299 WTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVV 338
>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Glycine max]
Length = 678
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G +++ K+FD + D SW T+++GY G A+ LF M GV
Sbjct: 475 VDFYCKCGFVEIGRKVFDGMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSA 534
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
++ GVL+AC GLVE+G+ F M+ + N+ P H++CMV L +
Sbjct: 535 ITFTGVLSACDHSGLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFAR 582
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ + Y+ GRI+ A IF+ +P K SW ++++G A+N+F M +
Sbjct: 369 LLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNKLD 428
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFF 88
++ S V++AC+ +E G++ F
Sbjct: 429 LKMDRFSFASVISACACRSSLELGEQVF 456
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y+R + A+ +FD +P +S SW TL+ + G A++LF AM +
Sbjct: 43 LQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWN 102
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ V++A + G ++ F+ M ++N
Sbjct: 103 M----VVSAFAKSGHLQLAHSLFNAMPSKN 128
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y GR+ A +FD + W ++I GY GE A+NLF AM +GV+ +
Sbjct: 245 YANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAV 304
Query: 69 IGVLTACS 76
+L+A S
Sbjct: 305 ANILSAAS 312
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A+++F + K+ SW T+I+ + + G+ + A++LF+ + G+
Sbjct: 408 IDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDE 467
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
+++IGVL+ACS GLV +G+ F EM+ ++P HYACM+ LL K
Sbjct: 468 ITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGK 515
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A +IFD +P+KD SW +++ Y G+L+ A LF+ +
Sbjct: 275 VDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNA---- 330
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++ A S L E+ + F++M A V+P +
Sbjct: 331 VSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDA 366
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A K+F +P +++ SW ++ Y + A+ +F M GVE +
Sbjct: 309 YAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATL 368
Query: 69 IGVLTACSLGGLVEKGKKFFD 89
+ VL+AC+ G ++ G+ +D
Sbjct: 369 VSVLSACAQLGCLDVGRCLYD 389
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+++A++ F ++ K+ SW +I GYGM G A+ +F M+ G+
Sbjct: 198 VDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNY 257
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ I VL ACS GL+++G+ +++ M Q ++ HY CMV LL
Sbjct: 258 ITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLL 303
>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
Length = 487
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A+++FD + +D+ +W T+I GY G + ++ +F M++DG +
Sbjct: 158 INMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDG 217
Query: 66 VSHIGVLTACSLGGLVEKGKKFF-DEMQARNVKPTETHYACMVYLL 110
VS + VL+ CS GLVE+G FF D + V+P E HY CM+ LL
Sbjct: 218 VSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLL 263
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +D A +F + + SW ++I+G M G A++LFE M+ G+
Sbjct: 253 VDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPED 312
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ IG+L+ACS GLVE+G+++F EM + + P HY CMV LL
Sbjct: 313 IAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLL 358
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 12 TGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV 71
+G ++ A K+FD +P D +W +I GY LG+ A+ LF M+ GV V+ + V
Sbjct: 158 SGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSV 217
Query: 72 LTACSLGGLVEKGK 85
L+AC+ G +E GK
Sbjct: 218 LSACTDLGALELGK 231
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDS-ASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G ID A ++ D S ++W +I G+ M G + A ++F MR++G+E
Sbjct: 354 IDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD 413
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M Q N+ P HY CM+ LL
Sbjct: 414 DITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLL 460
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I+ A K+FD +P+KD SW +I GY G A+ LF+ M + V+ +
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210
Query: 69 IGVLTACSLGGLVEKGKK 86
V++AC+ G +E G++
Sbjct: 211 ATVVSACAQSGSIELGRQ 228
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR++ A K+FDR +D S+ LI GY G ++ A +F+ + V
Sbjct: 117 ISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDV---- 172
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS +++ + G +K + F EM NVKP E+ A +V
Sbjct: 173 VSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVV 214
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y++ G ++ A ++ + L KD SW TLI GY + A+ LF+ M G
Sbjct: 244 IVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 303
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G ++ G+
Sbjct: 304 ETPNDVTMLSILPACAHLGAIDIGR 328
>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
Length = 753
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R+G++ A ++FD L +D ++ ++I GYGM GE A+ LFE M ++
Sbjct: 436 VDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDH 495
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ I VL+ACS GLV +G+ F++M++ + P H+ACM L
Sbjct: 496 ITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLF 541
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y+++G ++ A ++F + KD W +I G M G + AI LF M+E V+
Sbjct: 519 IDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNS 578
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ +L ACS GLV++GK+ FDEM+ V P HY+CMV +L
Sbjct: 579 VTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVL 624
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+ FY G +DLA +F+ + KD SW +++ G+ G D A++LFE MR +GV
Sbjct: 282 IHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHP 341
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFD 89
V+ + V++AC+ + G+K D
Sbjct: 342 NAVTMVSVMSACAKTMNLTLGRKVCD 367
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +++A +FD + +D SW T+I GY + E +A ++F++M + +
Sbjct: 385 IDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWN 444
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ 92
V +++ G ++ F E+Q
Sbjct: 445 V----LISGYEQSGRPKEALAIFRELQ 467
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++GR+ A +F + KD SW +LI GY + G A+ LFE M G+
Sbjct: 496 LTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDE 555
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ G+L+AC+ GG V++G F M + ++KP HYAC++ LL
Sbjct: 556 VTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLL 601
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y ++GR+D AN+IF ++ V+DS W ++I GY G D A+ LF+ M V
Sbjct: 333 INGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKDM 388
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS ++ A + G ++K + F+EMQ RNV
Sbjct: 389 VSWNTMIAAYAQAGQMDKALEMFNEMQERNV 419
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L YT+ G++ L + F+ + ++ SW ++ GY +G+LD A F+ + V
Sbjct: 178 LSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNV---- 233
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
VS + +L+ + G + + + F+EM +N+ + M+ ++ NQ
Sbjct: 234 VSWVTMLSGFAHYGRMTEARNLFNEMPTKNL----VSWNAMIGAYVRENQ 279
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R +ID A K+F +P KDS SW +I GY +G+L A + M P +
Sbjct: 274 YVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLM--------PYKN 325
Query: 69 IGVLTACSLG----GLVEKGKKFFDEMQARN 95
I TA G G +++ + F ++ R+
Sbjct: 326 IAAQTAMINGYLQSGRMDEANEIFSQISVRD 356
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM--REDGVEYYPV 66
Y ++ A ++FDR+ +D SW +I Y +GEL+ A LF + ++D V
Sbjct: 87 YLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQD-----TV 141
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ + L + KK FDEM +NV
Sbjct: 142 CRNALIAGYAKKRLFREAKKLFDEMLVKNV 171
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GRI A ++FD +P ++ SW ++I GY ++ A LF+ M + + + +
Sbjct: 56 YAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTL-- 113
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116
++T + G +EK ++ F N+ P + C L+ Y +K
Sbjct: 114 --MITCYTRIGELEKARELF------NLLPDKQDTVCRNALIAGYAKK 153
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G +D A F ++P + SW+T++ G+ G + A NLF M +
Sbjct: 209 VDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNL---- 264
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
VS ++ A ++ K F EM ++
Sbjct: 265 VSWNAMIGAYVRENQIDDAYKLFMEMPEKD 294
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
Y + G++D A ++F+ + ++ SW +LI GY G A+N F M++ G
Sbjct: 398 YAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQG 449
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G ID A ++F++ P K D SW T+I G M G + + +F M++ G+
Sbjct: 293 IDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPD 352
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL AC+ GGLV++G F MQ + + P HY CM+ LL
Sbjct: 353 DVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLL 399
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYP-- 65
Y R I+ A ++F +P +D SW T+I GY ++G A+ LF M +P
Sbjct: 192 YVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNG 251
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ VL+AC+ G +E G
Sbjct: 252 PTMSTVLSACAGAGCLETG 270
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPV 66
Y G + +A ++FD +P K + +W T++ Y +++ A LF AM R D V + V
Sbjct: 161 YGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTV 219
>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
Length = 487
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G + A+++FD + +D+ +W T+I GY G + ++ +F M++DG +
Sbjct: 158 INMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDG 217
Query: 66 VSHIGVLTACSLGGLVEKGKKFF-DEMQARNVKPTETHYACMVYLL 110
VS + VL+ CS GLVE+G FF D + V+P E HY CM+ LL
Sbjct: 218 VSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLL 263
>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Vitis vinifera]
Length = 748
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R+G++ A ++FD L +D ++ ++I GYGM GE A+ LFE M ++
Sbjct: 481 VDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDH 540
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ I VL+ACS GLV +G+ F++M++ + P H+ACM L
Sbjct: 541 ITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLF 586
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ Y + G++ +A +FD++P +D+ SW ++I Y +G + A LF +M + +E
Sbjct: 243 ISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIE 299
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G +++A +F+ L K SW +I GY M G + A++LF+ M+ + +
Sbjct: 245 MDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLPDH- 303
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +GVL ACS GGL+ +GK F M + N+ PT HY CM+ LL
Sbjct: 304 ITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLL 349
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + A+ +FDR+ ++ W +I GY G ++AI+L+ MR+ G+
Sbjct: 43 VNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDK 102
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ VL ACS +E+GKK ++
Sbjct: 103 FTFPFVLKACSALSAMEEGKKIHKDV 128
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A ++FD++ +D W +++ Y G+ D ++ L M +G++
Sbjct: 144 IDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTE 203
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ + + A + GL+ +GK+
Sbjct: 204 GTFVISIAASADNGLLPQGKEL 225
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ID A + F +P K+ SW ++ GY G A++LFE M++ GV
Sbjct: 717 ITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNH 776
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GLV++G K+F M + + P HYAC+V LL
Sbjct: 777 VTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLL 822
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A KIF RL KD SW +I GY + A+NLF+ M++ G+
Sbjct: 515 IDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDN 574
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++AC+ + +G++
Sbjct: 575 IGFASAISACAGIQALNQGQQ 595
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+ P +D Y + G ++ A K+FD L +DS SW+ ++ G G + A+ LF M G
Sbjct: 207 VCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSG 266
Query: 61 VEYYPVSHI--GVLTACS 76
V YP +I VL+AC+
Sbjct: 267 V--YPTPYIFSSVLSACT 282
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y+R G A ++F+ + +D S+ +LI G G D A+ LF+ M D ++ V+
Sbjct: 315 LYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVT 374
Query: 68 HIGVLTACSLGGLVEKGKKF 87
+L+ACS G + GK+F
Sbjct: 375 VASLLSACSSVGALLVGKQF 394
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
+ Y R G++ A FD++ KD+ SW +LI G+ G + A++LF M + G E
Sbjct: 616 VSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQE 672
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + I A++ F ++ W +++ YG+L L+ + +F M+ +G+E
Sbjct: 414 LDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQ 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
++ +L CS V+ G++ ++
Sbjct: 474 FTYPSILRTCSSLRAVDLGEQIHTQV 499
>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
Length = 1058
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+D A+K+F+ + ++ SW ++I GY G AI +FE M
Sbjct: 727 VDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDH 786
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLVE+G ++F+ M + P HY+C++ LL
Sbjct: 787 VTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLL 831
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
++ Y + R+ A+++FD +P +++ SW L+ GY + G + A +F AM RE
Sbjct: 103 VNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCR 162
Query: 65 PVSHI--GVLTACSLGG 79
P S +L AC GG
Sbjct: 163 PTSFTFGTLLRACQDGG 179
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A+KIF + D SW T+I G + A+ + MR+ +
Sbjct: 422 VNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSN 481
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ I L++C+ L+ G++
Sbjct: 482 FALISSLSSCAGLKLLTAGQQ 502
>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G + + KIFD++ KD SW T+I+GY + G+ +A+ +F M+ +G++
Sbjct: 454 MHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNE 513
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ + VLTACS+ G+ ++G F+ MQ + P HY CM LL
Sbjct: 514 STFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLL 559
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
L FY + G + A ++FD +PV+D +W +++ GY G +A++ F M E V++
Sbjct: 150 LAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHD 209
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
V I L AC L + +G++
Sbjct: 210 GVGIIAALAACCLDSALMQGRE 231
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I A +F +P + +W +I GY + G + A + F M+ +G +
Sbjct: 252 LDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEV 311
Query: 66 VSHIGVLTACS 76
V+ I +L AC+
Sbjct: 312 VTAINLLAACA 322
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 8 FYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
Y R+G + A ++FDR+ K++ +W ++I+ G + A+ LFE M GV+ +
Sbjct: 473 MYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRI 532
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
+ +GVL+AC+ G V++GK++F ++Q ++ + P +HYACMV LL +
Sbjct: 533 TFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLAR 579
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++GR+ A +F +P +D SW +++G +G AI +F M DG+
Sbjct: 103 LSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQ 162
Query: 66 VSHIGVLTACS 76
+ VL++C+
Sbjct: 163 FTLTNVLSSCA 173
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A +F+R+P + +SW ++ LG +D+A++LFE M + +
Sbjct: 204 LNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTI---- 259
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
VS V+ + GL K FF M
Sbjct: 260 VSWNAVIAGYNQNGLNAKALWFFSRM 285
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G + A ++FD + +D +W +I+GY G D A+ LF M G E
Sbjct: 370 LEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNS 429
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL+ C+ +E GK+
Sbjct: 430 YTVAAVLSVCASLACLEYGKQI 451
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDR--LPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
++ ++ Y++ G + A K+FD +D SW +I Y G AIN F+ MR+
Sbjct: 374 VVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRK 433
Query: 59 DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
G + V+++G+L+ACS GLVE+G K+FDE+ + R++ E HYAC+V L
Sbjct: 434 SGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDL 485
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R+ +I A K+F+ +P K+ SW T+I GY G +D A+ LFE M E V VS
Sbjct: 125 YIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV----VSW 180
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
V++ + G +E+ ++ FD M R+V
Sbjct: 181 NTVMSMLAQCGRIEEARRLFDRMPERDV 208
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
++ GRID A +FDR+P ++ SW +I GY LD A++LFE M E + +
Sbjct: 219 SKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMIT 278
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
G++ G + + +K F+EM +NV
Sbjct: 279 GLIQ----NGDLRRARKLFNEMPKKNV 301
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRID A +F+++P ++ SW T++ G ++ A LF+ M E V
Sbjct: 153 IDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV---- 208
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+S ++ S G +++ + FD M RNV
Sbjct: 209 ISWTAMIAGLSKNGRIDEARLLFDRMPERNV 239
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + R+D A +F+R+P +D SW T+I G G+L A LF M + V +S
Sbjct: 249 YAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV----ISW 304
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMV 107
++T C G E+ K F M + N KP + + ++
Sbjct: 305 TTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVL 344
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ + GRI+ A ++FDR+P +D SW +I G G +D A LF+ M E V
Sbjct: 184 MSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNV---- 239
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++T + +++ F+ M R++ T
Sbjct: 240 VSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNT 275
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
++ GRI A ++FD + D +W T+I GY G ++ A LF+ R D + ++
Sbjct: 63 SKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD--RVDAKK-----NV 115
Query: 70 GVLTACSLGGLVEKGK-----KFFDEMQARNV 96
TA +GG + K K F+EM +NV
Sbjct: 116 VTWTAM-VGGYIRSNKISDAEKLFNEMPNKNV 146
>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 679
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG----- 60
+D Y + G ++L+ ++FD++P+K+ +W +++ YGM G + A+ LF+ M G
Sbjct: 541 VDMYAKCGCLNLSRRVFDQMPIKNVITWNVIVMAYGMHGNGEEALELFKDMVAKGDNVGE 600
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ V+ I +L ACS G+V++G K F M+ ++P HYAC+ LL
Sbjct: 601 VKPTEVTMIAILAACSHSGMVDEGLKLFHRMKDDHGIEPGPDHYACVADLL 651
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE--DGVEY 63
+D Y+R +++++ IFD + V+D SW T+I GY + G + A+ + M+ +G+
Sbjct: 427 MDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYNDALLMLHEMQHANEGINK 486
Query: 64 Y-----------PVSHIGVLTACSLGGLVEKGKK 86
+ ++ + VL C+ + KGK+
Sbjct: 487 HDGDKQACFKPNSITLMTVLPGCASLAALAKGKE 520
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++FY + +D K+FDR+ +D SW +LI + E ++A+ F M + +E
Sbjct: 120 VNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPSS 179
Query: 66 VSHIGVLTACS 76
+ + + ACS
Sbjct: 180 FTLVSPVIACS 190
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+D A IF+ + ++D SW ++ G M G + AI LF M+++G +
Sbjct: 359 VDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDK 418
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
V+ I +L AC+ G V++G +F+ M+ + P HY CM+ LL
Sbjct: 419 VTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLL 464
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y +TG +++A +FD++P K+ +W +I G+ G A L+ M G++ +
Sbjct: 261 YCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTL 320
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
I +L AC+ GL+ GKK ++ +K
Sbjct: 321 ISILAACAESGLLVLGKKVHASIKKIRIK 349
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A +F+++P ++ SW T++ GY G++++A LF+ M + +
Sbjct: 227 LDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWT 286
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
+ +++ + GL ++ +++M+A +KP +
Sbjct: 287 I----IISGFAEKGLAKEATTLYNQMEAAGLKPDD 317
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
+ G + A K+FD + +D+ SW T++ GY GE+ A NLFE M E V VS
Sbjct: 201 KAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNV----VSWST 256
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNV 96
+++ G +E + FD+M +N+
Sbjct: 257 MVSGYCKTGDMEMARMLFDKMPFKNL 282
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 6 LDFYTRTG--RIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y++ G ++ A K+F + KD SW ++I G G+L A LF+ M E
Sbjct: 163 IDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDA-- 220
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS +L G + + F++M RNV T
Sbjct: 221 --VSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWST 256
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A ++F R+ KDS SW ++I G + G + A++LF M +GV+
Sbjct: 391 IDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTH 450
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
+ +G+L AC+ GLV KG ++F+ M++ + P HY C+V LL
Sbjct: 451 GTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLL 496
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R +LA +FDR+ ++ SW L++G+ +G L A LF+ M + V
Sbjct: 259 IDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDV---- 314
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
+S ++T S K F EM A VKP + A ++
Sbjct: 315 ISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVL 356
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ + G + A K+FD +P +D SW ++I GY + A+ LF+ M V+ V+
Sbjct: 293 HAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTV 352
Query: 69 IGVLTACSLGGLVEKG 84
VL+AC+ G ++ G
Sbjct: 353 ASVLSACAHLGKLDVG 368
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G++ A K+FD + +D SW TLI GY + + LF+AM ++
Sbjct: 158 IHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADA 217
Query: 66 VSHIGVLTACS 76
V+ + ++ ACS
Sbjct: 218 VTMVKIILACS 228
>gi|356546500|ref|XP_003541664.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g26900, mitochondrial-like [Glycine max]
Length = 470
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A IF+R+ KD SW +I G G+ G+ + I LF M ++G
Sbjct: 280 VDVYAKCGFLDEAMDIFERMEDKDVKSWTAMISGLGVHGQPNNVIRLFNRMEKEGFRPNE 339
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +LTACS GGLV +G + F M Q P HY C++ LL
Sbjct: 340 VTFLAILTACSHGGLVVEGTEMFKHMVQEYRFSPQVKHYGCLIDLL 385
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +FD + K+ +W +L+ GYGM G + A+ +FE MR G +
Sbjct: 520 IDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDG 579
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + VL ACS G++++G ++F+ M+ V P HYAC+V LL
Sbjct: 580 VTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLL 625
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D AN +F +PVKD SW ++ GY +G + A+ LFE M+E+ ++
Sbjct: 271 VDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDV 330
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
V+ ++ + GL + +M + +KP E
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
Y+R G + A K+FD +PV D SW ++I Y LG+ +A+ +F M E G ++
Sbjct: 172 YSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDIT 231
Query: 68 HIGVLTACSLGGLVEKGKKF 87
+ VL C+ G GK+F
Sbjct: 232 LVNVLPPCASVGTRSLGKQF 251
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVK--DSASWITLILGYGMLGELDVAINLFEAMRE 58
+I +D Y + ++D+A +FD L K D +W +I GY G+ + A+ L M E
Sbjct: 409 VINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 59 DGVEYYPVSHI--GVLTACSLGGLVEKGKK 86
+ + P + L AC+ + GK+
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALSIGKQ 498
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR++ A +F +P + S W +I G+ G + A+ LF+ MR DGV+
Sbjct: 494 IDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADH 553
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + +L+ACS GLV++ + FD MQ +KP HY CMV L
Sbjct: 554 ITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLF 599
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ID A +F++LP +D SW TLI GY G AI+ + M E+G P
Sbjct: 392 VNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMM-EEGRTIVP 450
Query: 66 V--SHIGVLTACSLGGLVEKGKK 86
+ + +L A S G +++G K
Sbjct: 451 NQGTWVSILPAYSHVGALQQGMK 473
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G +++A+K+F +PV+D SW +I G+ G + A+ + + M+ + V+
Sbjct: 189 IHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDT 248
Query: 66 VSHIGVLTACSLGGLVEKG 84
V+ +L C+ V G
Sbjct: 249 VTVSSMLPICAQSNDVVGG 267
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
++ Y++ GR+ A ++FD + V+D SW ++I Y + A+ F+ M
Sbjct: 290 INMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEM 340
>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F +PV++S SW LI Y G+ D + LFE M G++
Sbjct: 543 VDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDS 602
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
VS + +L ACS GLVE+G ++FD M + + P + HYA + +L +
Sbjct: 603 VSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCR 650
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y +T + LA ++F+ +P +DS ++ L+ GY G AINLF M+E G
Sbjct: 240 LDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTE 299
Query: 66 VSHIGVLTA 74
+ +LTA
Sbjct: 300 FTFAAILTA 308
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G AN+IF L ++ S W +I Y G + + LF M+ +
Sbjct: 442 VDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADA 501
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
++ ++ AC+ + GK+ +
Sbjct: 502 ATYASIVRACASLASLTLGKQLHSHI 527
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-- 63
LDFY++ R+ A+K+F +P D S+ L+ Y G + ++ LF+ ++ G +
Sbjct: 341 LDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRN 400
Query: 64 YPVSHIGVLTACSLG 78
+P + + + A SL
Sbjct: 401 FPFATLLSIAAISLN 415
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
+ + G ++ A K+FD +P K+ S T+I+GY G L A LF++M
Sbjct: 111 FLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSM 158
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDR--LPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
++ ++ Y++ G + A K+FD +D SW +I Y G AIN F+ MR+
Sbjct: 353 VVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRK 412
Query: 59 DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
G + V+++G+L+ACS GLVE+G K+FDE+ + R++ E HYAC+V L
Sbjct: 413 SGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDL 464
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R+ +I A K+F+ +P K+ SW T+I GY G +D A+ LFE M E V VS
Sbjct: 140 YIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV----VSW 195
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
V++ + G +E+ ++ FD M R+V
Sbjct: 196 NTVMSMLAQCGRIEEARRLFDRMPERDV 223
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 22/113 (19%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRID A +F+++P ++ SW T++ G ++ A LF+ M E V +
Sbjct: 168 IDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWT 227
Query: 66 VSHIGVLTAC-----------------SLGGLVEKG-----KKFFDEMQARNV 96
G+L + GL++ G +K F+EM +NV
Sbjct: 228 AMIAGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV 280
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVSHI 69
+ G + A K+F+ +P K+ SW T+I G GE + A+ +F M +G + + +
Sbjct: 261 QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFV 320
Query: 70 GVLTACS-LGGLVE 82
VL ACS L GL E
Sbjct: 321 SVLGACSNLAGLGE 334
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
++ GRI A ++FD + D +W T+I GY G ++ A LF+ R D + ++
Sbjct: 78 SKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFD--RVDAKK-----NV 130
Query: 70 GVLTACSLGGLVEKGK-----KFFDEMQARNV 96
TA +GG + K K F+EM +NV
Sbjct: 131 VTWTAM-VGGYIRSNKISDAEKLFNEMPNKNV 161
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A++IFD D SW +I GY G I+LFE + G+
Sbjct: 461 INMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ IGVL+ACS GLV+ G ++F+ M + + P++ HY CM+ LL +
Sbjct: 521 VTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCR 568
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G++ ++ IF + +D SW T+I GY G + A L MR +G +
Sbjct: 360 MTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTE 419
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL+AC ++E GK+
Sbjct: 420 FALASVLSACGNMAILEHGKQL 441
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD YT+ G+I ++F +P+++ SW +I G G A+ F M VEY
Sbjct: 158 LDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDS 217
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ L AC+ G + G+ E+ A+ +K
Sbjct: 218 YTFAIALKACADSGALNYGR----EIHAQAMK 245
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y + G+++ +F+++ ++D SW T+I +G+ + A+ F MRE V +
Sbjct: 261 MYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYT 320
Query: 68 HIGVLTACSLGGLVEKGKKF 87
V++ C+ +E G++
Sbjct: 321 FAAVISGCANLARIEWGEQL 340
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYYPVSHI 69
+TG + A ++FD++ KD SW TLI GY + A+ LF+ MR E G+ P
Sbjct: 61 KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILS 120
Query: 70 GVLTACSLGGLVEKGK 85
AC L V G+
Sbjct: 121 LAHKACGLNSDVNYGE 136
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A IF +P+K+ +SW LI G+ + G A++ F+ M G+
Sbjct: 359 VDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNE 418
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ I VL AC GLV++G++ F+ M ++ + P E HY CMV LL
Sbjct: 419 VTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLL 464
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + ++DLA ++FD L +D SW +I G A+ +F AM+ GV+
Sbjct: 258 LDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDK 317
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V VL+AC+ G +E G+ + ++ + ++
Sbjct: 318 VVLSTVLSACASLGALESGRWVHEYIERKGIE 349
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ID + ++F + K+ +W LI G GE +A+ F +M E+ V+
Sbjct: 365 IDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPND 424
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ IGVL+ACS LV++G+ F+ M+ +++P HY CMV +L
Sbjct: 425 VTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDIL 470
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++D A K+FD + +D +W +I GY A+NLF M++ V
Sbjct: 264 IDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNE 323
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
V+ + VL +C++ G E GK ++ + +K T T
Sbjct: 324 VTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVT 359
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G+I +A +FD +P + +W +++ GY G D + LF + E +E+
Sbjct: 163 IQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDD 222
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115
V+ I VL AC +E G+ + + ++ ++ T ++ + K Q
Sbjct: 223 VTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQ 272
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTA 74
ID A IF+ + +S+++ +I G D A+ LF+ M E V++ + VL A
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130
Query: 75 CSLGGLVEKGKK 86
CS + +G++
Sbjct: 131 CSRMKALREGEQ 142
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A+K FD +D W ++I Y GE A+ + E M +G+E
Sbjct: 597 LDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNY 656
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
++ +GVL+ACS GLVE G K F+ M ++P HY CMV LL
Sbjct: 657 ITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLL 701
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ID A +FD LP K + +W T+I G +G V++ LF + E V P
Sbjct: 190 IDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNV--VP 247
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
+I VL+ACS+ +E GK+
Sbjct: 248 DGYILSTVLSACSILPFLEGGKQ 270
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ A+K+FD +P K+ SW TL+ GY A+ LF +M + G++
Sbjct: 291 IDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDM 350
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +LT+C+ +E G +
Sbjct: 351 FACSSILTSCASLHALEFGTQ 371
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A K+F + +D +W +I GY G+ AINLFE M+++GVE
Sbjct: 283 VSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 342
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
++ + VLTAC GL + G + F+ MQ ++P HY+CMV LL + + R
Sbjct: 343 ITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 9 YTRT-GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R GR+ A +FDR+P D+ S+ TL+ + G+ D A LF +M V VS
Sbjct: 58 YARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV----VS 113
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARN 95
+++ S G VE+ K F M RN
Sbjct: 114 WNTMVSGLSKSGAVEEAKAVFLAMPVRN 141
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
Y G + A + F+ +PV++ SW ++ GY D A+ LF M RE V+ +
Sbjct: 184 YMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAST 243
Query: 68 HIGVLTACS 76
VL CS
Sbjct: 244 LSSVLLGCS 252
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
L + +G D A ++F +PV+D SW T++ G G ++ A +F AM
Sbjct: 87 LSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM 137
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+++G ++ A +F +PV++S SW ++ G+ ++ A F E G V
Sbjct: 122 SKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWT 178
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ G V K ++F+ M RN+
Sbjct: 179 AMVSGYMDIGNVVKAIEYFEAMPVRNL 205
>gi|449439075|ref|XP_004137313.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 277
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R G I A K FD + +KD +W ++I GYG G A+NLF M + V V+
Sbjct: 1 MYVRCGSIASARKCFDLIIIKDVVAWTSMIEGYGAHGLGVDALNLFHQMTSEEVTPNNVT 60
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+ +L+ACS GLV +G + F M++R N+KP HY C V LL +
Sbjct: 61 FLSLLSACSHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSR 106
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A K+F + +D +W +I GY G+ AINLFE M+++GVE
Sbjct: 283 VSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 342
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
++ + VLTAC GL + G + F+ MQ ++P HY+CMV LL + + R
Sbjct: 343 ITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 9 YTRT-GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R GR+ A +FDR+P D+ S+ TL+ + G+ D A LF +M V VS
Sbjct: 58 YARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV----VS 113
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARN 95
+++ S G VE+ K F M RN
Sbjct: 114 WNTMVSGLSKSGAVEEAKAVFLAMPVRN 141
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVS 67
Y G + A + F+ +PV++ SW ++ GY D A+ LF M RE V+ +
Sbjct: 184 YMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAST 243
Query: 68 HIGVLTACS 76
VL CS
Sbjct: 244 LSSVLLGCS 252
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
L + +G D A ++F +PV+D SW T++ G G ++ A +F AM
Sbjct: 87 LSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM 137
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+++G ++ A +F +PV++S SW ++ G+ ++ A F E G V
Sbjct: 122 SKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWT 178
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ G V K ++F+ M RN+
Sbjct: 179 AMVSGYMDIGNVVKAIEYFEAMPVRNL 205
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A ++F R+ KDS SW ++I G + G + A++LF M +GV+
Sbjct: 268 IDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTH 327
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
+ +G+L AC+ GLV KG ++F+ M++ + P HY C+V LL
Sbjct: 328 GTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLL 373
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G + A K+FD +P +D SW ++I GY + A+ LF+ M V+
Sbjct: 167 IDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDK 226
Query: 66 VSHIGVLTACSLGGLVEKG 84
V+ VL+AC+ G ++ G
Sbjct: 227 VTVASVLSACAHLGKLDVG 245
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G++ A K+FD + +D SW TLI GY + + LF+AM ++
Sbjct: 66 IHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADA 125
Query: 66 VSHIGVLTACS 76
V+ + ++ ACS
Sbjct: 126 VTMVKIILACS 136
>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
Length = 770
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A K F + ++ +W ++I GY G AI LFE MR GV
Sbjct: 435 VNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNE 494
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
++ + VL+ACS GL EK + +FD M+ ++P HY CMV + ++
Sbjct: 495 ITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVR 542
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y R G A +FD++P K+ +W LI GY + +L A+ +F M E G YP
Sbjct: 120 VNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAG--RYP 177
Query: 66 VSHI--GVLTACSLGGLVEKGKK 86
+ +L ACS + G +
Sbjct: 178 SHYTLGAMLNACSASNNADLGSQ 200
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A IF +P+K+ +SW LI G+ + G A++ F+ M G+
Sbjct: 359 VDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNE 418
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ I VL AC GLV++G++ F+ M ++ + P E HY CMV LL
Sbjct: 419 VTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLL 464
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + ++DLA ++FD L +D SW +I G A+ +F AM+ GV+
Sbjct: 258 LDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDK 317
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
V VL+AC+ G +E G+ + ++ + ++
Sbjct: 318 VVLSTVLSACASLGALESGRWVHEYIERKGIE 349
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+++A++ F ++ K+ SW +I GYGM G A+ +F M+ G+
Sbjct: 343 VDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNY 402
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ I VL ACS GL+++G+ +++ M Q ++ HY CMV LL
Sbjct: 403 ITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLL 448
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 6 LDFYTRTGRIDL--ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE--DGV 61
LD Y + G DL A K+FD + +D SW ++I Y G AI L+ M G+
Sbjct: 239 LDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGI 297
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91
+ V+ VL AC+ G ++ GK+ +++
Sbjct: 298 KCNAVALSAVLLACAHAGAIQTGKRIHNQV 327
>gi|361066821|gb|AEW07722.1| Pinus taeda anonymous locus 0_9722_01 genomic sequence
Length = 151
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+R+ +D SW +I+GY + G A+ LFE M+ G
Sbjct: 49 VDMYAKCGSLEDARKVFNRMTTRDVVSWNAMIVGYAIHGCGKEALQLFEQMKHTGTGPDH 108
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACM 106
V+ IGVL+A GLV+ G ++FD M + ++ P HY CM
Sbjct: 109 VTFIGVLSAVCHAGLVDDGWQYFDSMVEDYHITPVMEHYCCM 150
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++G I++A +F + KDS +W T+I + G+ A+ LF+ M GV
Sbjct: 287 MDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNS 346
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GL+E+G + FD M Q + P HY CM+ LL
Sbjct: 347 VTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYGCMIDLL 392
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFE 54
+D Y++ G+ + A K+FDR+ +KD +W +++ GY +D A++ F+
Sbjct: 155 IDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFD 203
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + +D A FD++PV+ +W LI G+ + A+ LF M +G
Sbjct: 186 LHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTH 245
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ +GVL+AC+ G ++ G+
Sbjct: 246 VTIVGVLSACADIGALDLGR 265
>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 622
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G +D + KIF +P +DS +W ++I YG+ G + A+ F M+E GV+
Sbjct: 417 INMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLDA 476
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP-TETHYACMVYL 109
V+ + VL+AC+ GLV +G++ F+++ A P T HYAC++ L
Sbjct: 477 VTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLIDL 521
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY R G +A +FD + VK+ SW +I G + DVA+ + M+ +GV
Sbjct: 214 VDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNR 273
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116
V+ I +L AC+ G V+ GK+ R + ++YL + Q
Sbjct: 274 VTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQS 324
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++F +P KD +W LILG M G+ + A+ F+ M GV+
Sbjct: 330 VDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDA 389
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++ +GVL ACS G V++G F+ M ++PT HY +V +L
Sbjct: 390 ITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDIL 435
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA +FD+ K+ SW +I G+ + A+ LF M+ G++
Sbjct: 229 MDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDK 288
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ +L AC+ G +E GK
Sbjct: 289 VTMASLLLACTHLGALELGK 308
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFE-AMREDGVEYY 64
++ Y+ G + A K+FD++ K SW T+I + + + A+ LF+ M+ + V+
Sbjct: 127 MNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPN 186
Query: 65 PVSHIGVLTACSLG---GLVEKGKKFFDE 90
V+ + VLTAC+ +V++ ++ DE
Sbjct: 187 EVTLVNVLTACARARDLAMVKRIHEYIDE 215
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ + +IF+ L D+ SW ++I G M G+ A+ LFEAM+ G++
Sbjct: 383 IEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDD 442
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ + VL+AC GLVE+G+K F M + +++P HY C + LL
Sbjct: 443 ITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLL 488
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + +A +IFD + VK+ W +++ GY + G+LD A LFE V
Sbjct: 251 LDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDV---- 306
Query: 66 VSHIGVLTACSLGGLV-----EKGKKFFDEMQARNVKP 98
VL + G V E F EMQ R V+P
Sbjct: 307 -----VLWTAMINGYVQFNHFEDAIALFGEMQIRGVEP 339
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G++D A +F+R P +D W +I GY + AI LF M+ GVE
Sbjct: 285 YVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIV 344
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +LT C+ G +E+GK + + +K
Sbjct: 345 VTLLTGCAQLGALEQGKWIHNYIDENRIK 373
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y G ++ ++F+ +P +D+ SW +I GY + A++++ M+ E +
Sbjct: 150 MDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPN 209
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFD 89
+ + L+AC++ +E GK+ D
Sbjct: 210 EATVVSTLSACAVLRNLELGKEIHD 234
>gi|218189222|gb|EEC71649.1| hypothetical protein OsI_04090 [Oryza sativa Indica Group]
Length = 419
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+D A+++F R+P+++ W +I G + AI LFE M GV+
Sbjct: 207 IDCYAKAGRLDYASRVFCRVPLRNVMHWTAMICGSAAHLGSEKAIQLFEEMCRSGVQPNE 266
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
++ VL+AC GLV++G++FF M +PT HY C+V L K
Sbjct: 267 MTFTAVLSACGQAGLVDQGRRFFKLMVDTYGFEPTIHHYGCIVDLYAK 314
>gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial [Vitis vinifera]
Length = 533
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y++ GRI+ A ++FD +P K+ SW ++I GYG G + A+ LF M+ E V+
Sbjct: 324 IDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPN 383
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN--VKPTETHYACMVYLL 110
V+ + L+AC GLV KG + M+ R+ +KP HYACMV LL
Sbjct: 384 YVTFLSALSACGHAGLVAKGWTILESME-RDYLLKPRMEHYACMVDLL 430
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + A K+F + +D +W +I GY G+ AINLFE M+++GVE
Sbjct: 332 VSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 391
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQKAR 118
++ + VLTAC GL + G + F+ MQ ++P HY+CMV LL + + R
Sbjct: 392 ITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 445
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 9 YTRT-GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R GR+ A +FDR+P D+ S+ TL+ + G+ D A LF +M V VS
Sbjct: 107 YARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV----VS 162
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQARN 95
+++ S G VE+ K F M RN
Sbjct: 163 WNTMVSGLSKSGAVEEAKAVFLAMPVRN 190
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 12 TGRIDLANKI-----FDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYP 65
+G +D+ N + F+ +PV++ SW ++ GY D A+ LF M RE V+
Sbjct: 231 SGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNA 290
Query: 66 VSHIGVLTACS 76
+ VL CS
Sbjct: 291 STLSSVLLGCS 301
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
L + +G D A ++F +PV+D SW T++ G G ++ A +F AM
Sbjct: 136 LSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM 186
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+++G ++ A +F +PV++S SW ++ G+ ++ A F E G V
Sbjct: 171 SKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWT 227
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
+++ G V K ++F+ M RN+
Sbjct: 228 AMVSGYMDIGNVVKAIEYFEAMPVRNL 254
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A ++F ++P K+ SW T+I G+GM G A+NLF MR
Sbjct: 294 IDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNS 353
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS G +E+G F M + + P E HYACMV LL
Sbjct: 354 VTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLL 399
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT G ++ A+K+F+ +P+K+S W +I GY E LF MR G E P
Sbjct: 104 MNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGYLNFSEEFGVFELFSRMRRSGFELDP 163
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
G++ AC ++GK F
Sbjct: 164 FVVEGLIQACGNVYAGKEGKTF 185
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +F+++ ++ SW ++I + + G+ A+ F M+++ ++
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYN 114
V+ +GVL ACS GLVE+G++ F M N+ P HY CMV L + N
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRAN 231
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y+R GR++ A IFD++ KD W +I GY + A+NLF M+ G++ V+
Sbjct: 24 YSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTI 83
Query: 69 IGVLTACSLGGLVEKGK 85
+ V++AC+ G++++ K
Sbjct: 84 LSVISACARLGVLDRAK 100
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +D A +F + ++ SW ++I G M G A+ +FE M GV
Sbjct: 157 IDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDD 216
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V IG+L+ACS GLV+KGK++FD M+ ++ P HY CMV +L +
Sbjct: 217 VVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCR 264
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G I+ A K+FD + DS SW +I GY +G AINLF M+ GV ++ + VL
Sbjct: 63 GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVL 122
Query: 73 TACSLGGLVEKGK 85
+AC+ G +E GK
Sbjct: 123 SACTGLGALELGK 135
>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 765
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G I+ A+K+F + ++ W T+I G+ G A+NLFE M+ G+
Sbjct: 433 INMYNKCGSIERASKVFLEMSIRTMILWTTMITGFAQHGWSKQALNLFEDMKLVGIRPNL 492
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +GVL+AC G+V + +F+ MQ +KP HY C+V +L++ Q
Sbjct: 493 VTFVGVLSACGSAGMVNEAFNYFEIMQKEYKIKPVMDHYVCLVDMLVRLGQ 543
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR++ A ++FD + +++ +W L+ GY AI+LFE M E YP ++
Sbjct: 118 YAKCGRMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHS-ECYPSNY 176
Query: 69 IG--VLTACS 76
L AC+
Sbjct: 177 TLAIALNACT 186
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-----------AINLFE 54
L Y + G I A ++F + + +W +I G+ + EL A+NLF
Sbjct: 321 LYLYLKCGCIVEAQRLFKGMNDVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALNLFS 380
Query: 55 AMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ G++ P + VL+ CS +E+G +++ AR +K
Sbjct: 381 KLNRSGMKPDPFTFSSVLSVCSKMMALEQG----EQIHARTIK 419
>gi|294462449|gb|ADE76772.1| unknown [Picea sitchensis]
Length = 232
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + I A+K+FD + ++ SW +I Y + G A++LFE M+
Sbjct: 72 IDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQ 131
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL+AC GLV +G+++F+ M ++ P HY CMV LL
Sbjct: 132 VTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLL 177
>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
Length = 610
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+ +A K+FD + +W +I GYG G VA+ LFE M+ G
Sbjct: 407 IDMYSKCGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNE 466
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
+ + VL ACS GLV++G+K+F M+ ++P HY +V LL
Sbjct: 467 TTFLSVLAACSHAGLVDEGRKYFASMKDYGLEPGMEHYGTLVDLL 511
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ A +FD +PV++S SW +I GY G A+ LF M ++GV+
Sbjct: 204 LDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYAENGNASEALALFWRMVQEGVDVTD 263
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
+ + L AC G +++ ++ + + +K ++ + M L+ Y++ R
Sbjct: 264 AAVLAALQACRELGCLDEARRVHELLVRVGLK---SNVSVMNALITTYSKCKR 313
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR--EDGVEYY 64
+ Y + R A ++FDR+P +D +W L+ GY G +A+ M+ E G +
Sbjct: 102 NMYFKCRRPVDARRVFDRMPARDRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPD 161
Query: 65 PVSHIGVLTACS 76
++ + VL AC+
Sbjct: 162 SITLVSVLPACA 173
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ID A +F+ +P ++ SW +I+G G A+ LFE M + +
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDN 423
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ IG+L+AC +E+G+++FD + ++ + PT HYACMV LL
Sbjct: 424 VTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLL 469
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G I+ A +FD L K+ SW +I GY G+ + I L MR G V
Sbjct: 198 DMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQV 257
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
+ ++ A G V++ ++ F E + +++ C +++ Y + R
Sbjct: 258 TMSTIIAAYCQCGRVDEARRVFSEFKEKDI-------VCWTAMMVGYAKNGR 302
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++G I FDR+P +DS S+ T I G+ ++ LF+ M+ +G E
Sbjct: 96 LSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTE 155
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ + +L A + + GK+ + RN
Sbjct: 156 YTIVSILNASAQLLDLRYGKQIHGSIIVRN 185
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR+D A ++F KD W +++GY G + A+ LF M + +E +
Sbjct: 266 YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTL 325
Query: 69 IGVLTACSLGGLVEKGK 85
V+++C+ + G+
Sbjct: 326 SSVVSSCAKLASLHHGQ 342
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
L Y + G++ A +FD++ +D SW L+ Y G + F+ M D V Y
Sbjct: 65 LHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYN 124
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
+ S ++ + F MQ +PTE
Sbjct: 125 T-----TIAGFSGNSCPQESLELFKRMQREGFEPTE 155
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L+ Y R GRID A +F+ + ++ SW ++I+G + G D AI LF M +G
Sbjct: 257 LEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPD 316
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL AC+ GG+V +G+ FF+ M+ ++ P HY CMV LL
Sbjct: 317 DVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLL 363
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA K FD + V+D +W ++I GY G+L+ A+ LF M V
Sbjct: 124 VDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNV---- 179
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMV 107
S +++ + G K F M+ ++P E A ++
Sbjct: 180 TSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVL 222
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R+G++ A ++FD + +D ++ +LI GYG+ GE A+ LF+ M++ ++
Sbjct: 474 VDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDH 533
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL+ACS GLV +G K F+ M A + P H+ACMV L
Sbjct: 534 VTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLF 579
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y +TG + A +F+ + +D SW T+I GY G A LF MR +G+E
Sbjct: 236 VSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNI 295
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ + C G E+ + M++ +
Sbjct: 296 ITWNTIAGGCVQSGNFEEALELLSHMRSYGI 326
>gi|302795755|ref|XP_002979640.1| hypothetical protein SELMODRAFT_111471 [Selaginella moellendorffii]
gi|300152400|gb|EFJ19042.1| hypothetical protein SELMODRAFT_111471 [Selaginella moellendorffii]
Length = 235
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ YT+ G + A +F R+P + SW I GY G A+ L++ M +G +
Sbjct: 40 LNLYTKCGSMQDAIALFHRMPTPNQISWTCTIAGYAQQGHSTEALELYQKMDLEGTKPNQ 99
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
V+ +GVLTAC+ GLVE G +++ M + N++P E HY ++ +L K
Sbjct: 100 VTLLGVLTACTHAGLVEDGIYYYNSMVSDHNIQPKEEHYGSLIDMLAK 147
>gi|115440507|ref|NP_001044533.1| Os01g0800400 [Oryza sativa Japonica Group]
gi|19570985|dbj|BAB86412.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|20804737|dbj|BAB92423.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534064|dbj|BAF06447.1| Os01g0800400 [Oryza sativa Japonica Group]
gi|125572331|gb|EAZ13846.1| hypothetical protein OsJ_03770 [Oryza sativa Japonica Group]
gi|215693327|dbj|BAG88709.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 440
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+D A+++F R+P+++ W +I G + AI LFE M GV+
Sbjct: 223 IDCYAKAGRLDYASRVFCRVPLRNVMHWTAMICGSAAHLGSEKAIQLFEEMCRSGVQPNE 282
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
++ VL+AC GLV++G++FF M +PT HY C+V L K
Sbjct: 283 MTFTAVLSACGQAGLVDQGRRFFKLMVDTYGFEPTIHHYGCIVDLYAK 330
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y + G I A++ FD + +D+ SW ++I+ G + A+ LFE M +G+
Sbjct: 455 ITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPD 514
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++++GV +AC+ GLV +G+++FD M+ + PT +HYACMV L
Sbjct: 515 HITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLF 561
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ G +D + FD+LP +DS SW T+I+GY +G+ AI + M ++G+E
Sbjct: 87 LSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ 146
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL + + +E GKK
Sbjct: 147 FTLTNVLASVAATRCMETGKK 167
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
L+ Y + G +A +FDR+ V+D +SW +I + +G++D+A+ FE M E
Sbjct: 188 LNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM 56
LD Y + G ++ A IF L +D +W +I+GY G AINLF +M
Sbjct: 354 LDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM 404
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GR+++A++ F ++ K+ SW +I GYGM G A+ +F M+ G+
Sbjct: 344 VDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNY 403
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ I VL ACS GL+++G+ +++ M Q ++ HY CMV LL
Sbjct: 404 ITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLL 449
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 6 LDFYTRTGRIDL--ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE--DGV 61
LD Y + G DL A K+FD + +D SW ++I Y G AI L+ M G+
Sbjct: 240 LDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGI 298
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91
+ V+ VL AC+ G ++ GK+ +++
Sbjct: 299 KCNAVALSAVLLACAHAGAIQTGKRIHNQV 328
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ A +F ++P + S +W +I +G+ G + + LF M ++GV+
Sbjct: 562 IDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDH 621
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + +L+ACS G VE+GK F MQ +KP+ HY CMV LL
Sbjct: 622 VTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLL 666
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A+K+F+ +PVKD SW TLI GY G AI +++ M E+ E P
Sbjct: 460 VDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMM-EECKEIIP 518
Query: 66 V--SHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ + +L A + G +++G K + N+
Sbjct: 519 NQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 551
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G +A +FD +P +D SW +I G G A+++ + MR +G++
Sbjct: 257 IHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNF 316
Query: 66 VSHIGVLTAC 75
V+ + +L C
Sbjct: 317 VTVVSILPVC 326
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L+ Y R GRID A +F+ + ++ SW ++I+G + G D AI LF M +G
Sbjct: 257 LEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPD 316
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL AC+ GG+V +G+ FF+ M+ ++ P HY CMV LL
Sbjct: 317 DVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLL 363
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + LA K FD + V+D +W ++I GY G+L+ A+ LF M V
Sbjct: 124 VDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNV---- 179
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMV 107
S +++ + G K F M+ ++P E A ++
Sbjct: 180 TSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVL 222
>gi|302791269|ref|XP_002977401.1| hypothetical protein SELMODRAFT_106861 [Selaginella moellendorffii]
gi|300154771|gb|EFJ21405.1| hypothetical protein SELMODRAFT_106861 [Selaginella moellendorffii]
Length = 344
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM--REDGVEY 63
+DFY + + A ++F +P K+ SW +LI GY G+ LF M RE+G++
Sbjct: 167 VDFYGKCASMGDAERVFSSIPSKNLVSWTSLIAGYSRQGDSQRVFELFRRMQSREEGIKP 226
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIKYN 114
++++ VL+AC G V++ K + +EM++++ + P HY CMV LL + N
Sbjct: 227 DAITYLSVLSACCRSGHVDRAKFYLEEMRSKHGIAPGIEHYTCMVRLLGQAN 278
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED 59
+D Y++ G I A IF + +D SW ++I G+L AI +FE++R D
Sbjct: 27 IDMYSKCGAIADACHIFHSMESRDLVSWTSIIQALSRAGDLREAIQVFESIRPD 80
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y R G I ++FD + +D SW +LI YGM G AI +FE M GV
Sbjct: 324 ITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSY 383
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ I VL ACS GLVE+ K F+ M + + P HYACMV +L + N+
Sbjct: 384 ITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANR 434
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY- 64
LD Y R G + A+ +F +P K+ SW +I Y A+ LF+ M + +
Sbjct: 221 LDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVP 280
Query: 65 -PVSHIGVLTACSLGGLVEKGK 85
P++ + VL AC+ +E GK
Sbjct: 281 NPITMVSVLQACASLAALEHGK 302
>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Glycine max]
Length = 1033
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G+ID A++ F+ +PV++ SW ++I GY G A+ LF M++ G
Sbjct: 702 VDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDH 761
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +GVL+ACS GLV++G + F M + + P H++CMV LL
Sbjct: 762 VTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLL 807
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + ID A IF +P KD+ SW ++I G + A+ F MR +G+
Sbjct: 397 VNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSK 456
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDE 90
S I L++C+ G + G++ E
Sbjct: 457 FSVISTLSSCASLGWIMLGQQIHGE 481
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
++ + R G + A K+FD +P K+ SW L+ GY G D A LF + G+ +
Sbjct: 81 VNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNH 140
Query: 64 YPVSHIGVLTAC 75
Y + L AC
Sbjct: 141 YAIG--SALRAC 150
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 12 TGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY------YP 65
+ ID A ++F+ + +K SASW ++I Y G+ A LF +M+ + E Y
Sbjct: 191 SASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYT 250
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
+ V ACS LV+ G ++M AR K +
Sbjct: 251 FCSL-VTVACS---LVDCGLTLLEQMLARIEKSS 280
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+ Y + G I A++ FD + +D+ SW ++I+ G + A+ LFE M +G+
Sbjct: 455 ITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPD 514
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
++++GV +AC+ GLV +G+++FD M+ + PT +HYACMV L
Sbjct: 515 HITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLF 561
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G +D + + FDRLP +DS SW T+I+GY +G+ AI + M +G+E
Sbjct: 87 LSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQ 146
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL + + +E GKK
Sbjct: 147 FTLTNVLASVAATRCLETGKK 167
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
L+ Y + G +A +FDR+ VKD +SW +I + +G++D+A+ FE M E
Sbjct: 188 LNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAE 240
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G ++ A IFD L +D +W +I+GY G AINLF +M G E P
Sbjct: 354 LDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMV--GEEQRP 411
Query: 66 VSHI--GVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117
S+ +L+ S + GK ++ VK E + + LI KA
Sbjct: 412 NSYTLAAMLSVASSLASLGHGK----QIHGSAVKSGEIYSVSVSNALITMYAKA 461
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ A +F ++P + S +W +I +G+ G + + LF M ++GV+
Sbjct: 562 IDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDH 621
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + +L+ACS G VE+GK F MQ +KP+ HY CMV LL
Sbjct: 622 VTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLL 666
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58
+D Y + G +D A+K+F+ + VKD SW TLI GY G AI +++ M E
Sbjct: 460 VDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEE 512
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G +A +FD +P +D SW +I G G A+++ + MR +G++
Sbjct: 257 IHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNF 316
Query: 66 VSHIGVLTAC 75
V+ + +L C
Sbjct: 317 VTVVSILPVC 326
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++FD + + +SW +I G+ M G + A ++F MR++ +E
Sbjct: 380 IDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDD 439
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M+ + P HY CM+ LL
Sbjct: 440 ITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLL 485
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I A K+FD +P+KD SW +I GY G A+ LF+ M + V +
Sbjct: 179 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 238
Query: 69 IGVLTACSLGGLVEKGKK 86
+ V++AC+ +E G++
Sbjct: 239 VSVVSACAQSASIELGRQ 256
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G ++ A +F+ L KD SW TLI GY + A+ LF+ M G
Sbjct: 272 IVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 331
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G +E G+
Sbjct: 332 ESPNDVTMLSILPACAHLGAIEIGR 356
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR++ A K+FD+ +D S+ LI GY G + A +F+ + V
Sbjct: 145 ISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV---- 200
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS +++ + G ++ + F EM NV+P E+
Sbjct: 201 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDES 236
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+ A +F ++P + S +W +I +G+ G + + LF M ++GV+
Sbjct: 329 IDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDH 388
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + +L+ACS G VE+GK F MQ +KP+ HY CMV LL
Sbjct: 389 VTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLL 433
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A+K+F+ +PVKD SW TLI GY G AI +++ M E+ E P
Sbjct: 227 VDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMM-EECKEIIP 285
Query: 66 V--SHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
+ + +L A + G +++G K + N+
Sbjct: 286 NQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 318
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G +A +FD +P +D SW +I G G A+++ + MR +G++
Sbjct: 157 IHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNF 216
Query: 66 VSHIGVLTAC----SLGGLVEKGKKFFDEMQARNVKPTET 101
V+ + +L + GL++ K F+ + ++V T
Sbjct: 217 VTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNT 256
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A ++FD + + +SW +I G+ M G + A ++F MR++ +E
Sbjct: 365 IDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDD 424
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L+ACS G+++ G+ F M+ + P HY CM+ LL
Sbjct: 425 ITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLL 470
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G I A K+FD +P+KD SW +I GY G A+ LF+ M + V +
Sbjct: 164 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 223
Query: 69 IGVLTACSLGGLVEKGKK 86
+ V++AC+ +E G++
Sbjct: 224 VSVVSACAQSASIELGRQ 241
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + G ++ A +F+ L KD SW TLI GY + A+ LF+ M G
Sbjct: 257 IVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG 316
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
V+ + +L AC+ G +E G+
Sbjct: 317 ESPNDVTMLSILPACAHLGAIEIGR 341
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR++ A K+FD+ +D S+ LI GY G + A +F+ + V
Sbjct: 130 ISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV---- 185
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS +++ + G ++ + F EM NV+P E+
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDES 221
>gi|255578711|ref|XP_002530214.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530261|gb|EEF32161.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 834
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ GRID A++ F+ +P+++ SW ++I GY G DVA+ LF M+ DG
Sbjct: 598 VDMYSKCGRIDYASRFFESMPLRNLYSWNSMISGYARHGRGDVALQLFTQMKLDGQLPDH 657
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH-YACMVYLLIKYNQK 116
V+ +GVL+ACS GLV++G K F M +P ++ + +LL+ N K
Sbjct: 658 VTFVGVLSACSHVGLVDEGFKHFKSMTG---QPNRAKIFSKLNFLLLPLNMK 706
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
L Y R G +D KIF ++ + D SW ++I GY L A++L M + G
Sbjct: 496 LACYGRCGDMDYCEKIFSKMSNRRDEVSWNSMISGYIHNDFLPKAMDLVWIMMQSGQRLD 555
Query: 65 PVSHIGVLTACSLGGLVEKG 84
+L+AC+ +E+G
Sbjct: 556 TFILATILSACASVATLERG 575
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R GR++ A IF R+ ++ SW +I G+ M G AI FE M++ GV
Sbjct: 313 ITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDD 372
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+ GVL+ACS GLV+ G FFD M + ++P HY CMV LL
Sbjct: 373 QTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLL 418
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE--DGVEY 63
+D Y+ + + A K+FD +P D+ SW LI A+ +F+ M+ DG E
Sbjct: 210 MDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEP 269
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFD 89
V+ + +L AC+ G +E G++ +
Sbjct: 270 DDVTCLLLLQACANLGALEFGERVHN 295
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ID + ++F+ + V+D+ SW ++ Y G I LF+ M + G++
Sbjct: 413 VTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDG 472
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ GV++ACS GLVEKG+++F M + + P+ HY+CM+ L +
Sbjct: 473 VTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSR 520
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
+D Y + + A +FDR+ K+ SW +++GYG G + A+ +F M+ G+ ++
Sbjct: 312 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDH 371
Query: 64 YPVSHIGVLTACSLGGLVEKGKKF 87
Y + ++AC+ +E+G +F
Sbjct: 372 YTLGQ--AISACANVSSLEEGSQF 393
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVS 67
Y++ G I F++LP +D +W LI GY + G + A+ + M D V+
Sbjct: 82 YSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVT 141
Query: 68 HIGVLTACSLGGLVEKGKKFFDEM 91
+ +L S G V GK+ ++
Sbjct: 142 LMTMLKLSSSNGHVSLGKQIHGQV 165
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
P L Y G I A K+F L +++ + +L+ G G ++ A+ LF M +D V
Sbjct: 178 SPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVS 237
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ ++ + GL ++ + F EM+ + +K
Sbjct: 238 W-----AAMIKGLAQNGLAKEAIECFREMKVQGLK 267
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 18 ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYYPVSHIGVLTACS 76
A ++FDR+P + SW L+L Y G + + FE + + DGV + ++ S
Sbjct: 60 ARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNV-----LIEGYS 114
Query: 77 LGGLVEKGKKFFDEM 91
L GLV K ++ M
Sbjct: 115 LSGLVGAAVKAYNTM 129
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EYYPVSHIG 70
G I+ A ++F + KDS SW +I G G AI F M+ G+ + YP
Sbjct: 219 GMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFG--S 275
Query: 71 VLTACSLGGLVEKGKK 86
VL AC G + +GK+
Sbjct: 276 VLPACGGLGAINEGKQ 291
>gi|357116310|ref|XP_003559925.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Brachypodium distachyon]
Length = 560
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ +F + +D +W +I+G G+ G+ D A++ F AM DGV
Sbjct: 354 MDMYFKCGYPNEAHVVFYAMRDRDVMTWTAIIMGLGVNGQSDAALSQFRAMARDGVAPNE 413
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL ACS GGLV +GKK + M + + P HY C++ LL
Sbjct: 414 VTFLAVLNACSHGGLVSEGKKHLESMVRQYGISPRSEHYGCIIDLL 459
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 35/130 (26%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y G + A ++FD +P +DS SW T+I + + E+ A+ +F AMR GV+ +
Sbjct: 160 LYCSLGSMGDARRLFDEMPERDSVSWNTMIGCHVRVEEVGTALEMFSAMRCRGVDVNATT 219
Query: 68 HIGVLTAC-----SLGGLVEK-------------------------GKKFFDEMQARNVK 97
+ L AC SL G K KK FDE+ R+V
Sbjct: 220 -VVALAACGWRGESLHGFCIKTGLFTDVKVATALQGMYFRKVGTGCAKKIFDEVMRRDV- 277
Query: 98 PTETHYACMV 107
Y CMV
Sbjct: 278 ---VLYNCMV 284
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R A KIFD + +D + ++ G+++ A+ L + MR++GV +
Sbjct: 255 MYFRKVGTGCAKKIFDEVMRRDVVLYNCMVDNCAKGGKVEEAMGLVDRMRQEGVRPNTGT 314
Query: 68 HIGVLTACSLGGLVEKGKKFFD 89
+ VL+AC G + G + D
Sbjct: 315 LVTVLSACGTSGAIAAGCRIHD 336
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++F ++ V+ W ++LG G +D A+NLF M+ +G++
Sbjct: 1242 VDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDK 1301
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMV 107
V+ IGVL+ACS GL + K+FD M + + P HY+C+V
Sbjct: 1302 VTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLV 1344
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A ++F + D +W T+I GY G+ D A++++ MR GV+
Sbjct: 1141 LDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDE 1200
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ A S +E+GK+
Sbjct: 1201 YTFATLIKASSCLTALEQGKQ 1221
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G + A K F P D SW T+I Y AI F + DG++
Sbjct: 936 MNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQ 995
Query: 66 VSHIGVLTACSLG 78
+ VL ACS G
Sbjct: 996 FTLASVLRACSTG 1008
>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY + G ++ + +F+ LP +++ SW +I G+ G + A+ FE MR G+
Sbjct: 273 VSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNS 332
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN---VKPTETHYACMVYLLIKYNQ 115
V+ +G+L AC+ GLVEKG +F++M+ +KP HYACMV LL ++ +
Sbjct: 333 VTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILKP--EHYACMVDLLSRFGR 383
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFY + + A F+ + + S+ TLI GY G++D A+ LF+ M E V
Sbjct: 141 LDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNV---- 196
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107
VS ++ S G E+ F EM P ++ + C +
Sbjct: 197 VSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAI 238
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV----EYY 64
Y + G+ID A ++F +P ++ SW ++ G+ +G + A++LF M +G +
Sbjct: 175 YLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTF 234
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
P + SLG GK F
Sbjct: 235 PCAITSAANMASLG----MGKSF 253
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+++A +F+ + KD SW ++ G M G A+ LF+ M+E+G
Sbjct: 357 VDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNK 416
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ IGVL AC+ GL++ G ++F M+ + P HY CMV LL
Sbjct: 417 VTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLL 462
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +++A +FD++PVK+ SW ++ G+ G AI+LF+ M + ++ +
Sbjct: 259 YCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTV 318
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99
+ +L AC+ GL+ G+K ++ N K T
Sbjct: 319 MSILAACAESGLLGLGEKIHASIKNNNFKCT 349
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G++D A K+FD +P ++ SW T++LGY G++++A LF+ M +
Sbjct: 225 LDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNL---- 280
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
VS +++ + GL + FD+M+ +K
Sbjct: 281 VSWTIIVSGFAEKGLAREAISLFDQMEKACLK 312
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ G + A K+FD +P KD SW T++ GY +G++D A LF+ M E V + +
Sbjct: 198 AKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVL 257
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96
G A G +E + FD+M +N+
Sbjct: 258 GYCKA----GDMEMARMLFDKMPVKNL 280
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K+F+ P K SW ++I + + G+ D AI +FE M E G P
Sbjct: 279 VDMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRP 338
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +G+L AC+ GGLVEKG +F+ M Q ++P HY C++ LL
Sbjct: 339 DEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLL 386
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ R G ++ A ++F + +D SW LI G G I LF M + V+
Sbjct: 181 FARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTV 240
Query: 69 IGVLTACSLGGLVEKGK 85
+ L+AC G+++ G+
Sbjct: 241 VCALSACGHMGMLQLGR 257
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G +D+A KIFD K+ +W +++G M G ++ + F M E GV+
Sbjct: 298 VDFYAKCGCVDIALKIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDG 357
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE-THYACMVYLL 110
+S +GVL CS GLV++ +K FDEM++ P E HY CM LL
Sbjct: 358 ISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLL 403
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G + A ++FD +PV+DS SW T+I G + AI LF+ M + +
Sbjct: 197 IDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDN 256
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
V+ + L+AC+ G +EKGKK D ++ RN +T
Sbjct: 257 VALVSTLSACAQLGELEKGKKIHDYIE-RNAMKVDT 291
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +D A IF+++ KD+ +W +I+ Y G+ + ++ +FE MR + V+
Sbjct: 272 IDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDE 331
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L ACS G VE+G+K+F +M ++ + P+ HY MV LL
Sbjct: 332 ITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 377
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT +D A +FDR+ + +I GY + A++LF M+ ++
Sbjct: 171 INMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNE 230
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + VL++C+L G ++ GK
Sbjct: 231 ITLLSVLSSCALLGSLDLGK 250
>gi|449529626|ref|XP_004171799.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g04860-like [Cucumis sativus]
Length = 704
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+D A +F + ASW +LI GYG+ G + A+ + M E G++
Sbjct: 503 VDMYVKCGRMDFAENVFKSMKEPCLASWNSLISGYGLFGFHNHALLCYTEMMEKGIKPNK 562
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ G+L AC+ GGLVE+G+K+F M+ + + P H A MV +L
Sbjct: 563 ITFSGILAACTHGGLVEEGRKYFKIMKKKFGIVPESQHCASMVGML 608
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G + A ++FD P KD SW LI GY G A LF MR +
Sbjct: 105 LDLYSKLGFVKAAQRLFDDFPEKDVVSWNALISGYTRCGNSHDAFKLFVEMRRREFDPCQ 164
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ + ++ +C L +GK
Sbjct: 165 RTLVSLMPSCGTQQLFVQGKS 185
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + +D +F + K SW T+I +G G A+ +F+ M E+ V
Sbjct: 206 VSMYGKCADLDGVKLLFGEITEKSVVSWNTMIGAFGQNGLFSEAMLVFKQMLEESVNANS 265
Query: 66 VSHIGVLTACSLGGLVE 82
V+ + +L+A + G +
Sbjct: 266 VTMVSILSANANTGCIH 282
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A ++F ++ V+ W ++LG G +D A+NLF M+ +G++
Sbjct: 1242 VDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDK 1301
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMV 107
V+ IGVL+ACS GL + K+FD M + + P HY+C+V
Sbjct: 1302 VTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLV 1344
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A ++F + D +W T+I GY G+ D A++++ MR GV+
Sbjct: 1141 LDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDE 1200
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ ++ A S +E+GK+
Sbjct: 1201 YTFATLIKASSCLTALEQGKQ 1221
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G + A K F P D SW T+I Y AI F + DG++
Sbjct: 936 MNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQ 995
Query: 66 VSHIGVLTACSLG 78
+ VL ACS G
Sbjct: 996 FTLASVLRACSTG 1008
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G IDLA ++F R+ V++ +W LI G M G + AI+LF+ M D +
Sbjct: 356 VDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDD 415
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ I +L ACS GLV++G F M+ + ++P HY C+V LL +
Sbjct: 416 VTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCR 463
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + I+ A ++F+R+ KD SW +++ G G A+ LF+ M+ + +E
Sbjct: 255 LDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDE 314
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ +GVL+AC+ G +++GK
Sbjct: 315 ITLVGVLSACAQTGALDQGK 334
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-D 59
+I + FY G A +FD V+D +W +I + G + A +L + M + D
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207
Query: 60 GVEYYPVSHIGVLTACSLGGLVEKGK 85
+ V+ + ++ AC+ G +E+GK
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGK 233
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ +G ++ A K+F ++ D T+I GY A++L+ M E GV ++
Sbjct: 56 SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYP 115
Query: 70 GVLTACSLGGLVEKGKKFFDEM 91
VL AC+ G V+ G++F E+
Sbjct: 116 FVLAACARLGAVKLGRRFHCEV 137
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A K+F+ +D W ++I + GE + A+ +F M ++G++
Sbjct: 483 VDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNY 542
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL+ACS G VE G F+ M +KP HYAC+V LL
Sbjct: 543 VTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVSLL 587
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
+DFY++ G I++A +FD+L K + +W T+I GY G V++ LF MRE V +
Sbjct: 79 IDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDR 138
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
Y VS VL+ACS+ +E GK+
Sbjct: 139 YVVS--SVLSACSMLEFLEGGKQ 159
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
+DFYT+ R+ K+FD++ VK+ SW T+I GY M D A+ LF M G +
Sbjct: 180 IDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY-MQNSFDWEAMKLFGEMNRLGWKPD 238
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
+ VLT+C +E+G++ N++ E
Sbjct: 239 GFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNE 274
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++ + A K+FD + ++ S+ +I GY +L A+ LF MR V +P
Sbjct: 281 IDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR---VRLFP 337
Query: 66 VSHIGVLTACSLGGL 80
S +LT SL G+
Sbjct: 338 PS---LLTFVSLLGV 349
>gi|326517994|dbj|BAK07249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR--EDGVEY 63
LD Y++ GR++ ++FD + ++ +W ++I GYG G D A+ L E MR + G+
Sbjct: 91 LDMYSKCGRVEDGRRVFDGMAERNVVTWTSMIDGYGKNGLSDEALLLLEEMRGQQRGIRP 150
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
+ + L+AC+ GL+ +G++ F M+ ++KP HYACMV LL ++
Sbjct: 151 NHATFLSALSACARAGLLSRGQELFQSMERDCSLKPRMEHYACMVDLLGRFGS 203
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G IDLA ++F R+ V++ +W LI G M G + AI+LF+ M D +
Sbjct: 258 VDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDD 317
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ I +L ACS GLV++G F M+ + ++P HY C+V LL +
Sbjct: 318 VTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCR 365
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE-D 59
+I + FY G A +FD V+D +W +I + G + A +L + M + D
Sbjct: 148 VINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLD 207
Query: 60 GVEYYPVSHIGVLTACSLGGLVEKGK 85
+ V+ + ++ AC+ G +E+GK
Sbjct: 208 NLRPDEVTMVSLVPACAQLGNLERGK 233
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ +G ++ A K+F ++ D T+I GY A++L+ M E GV ++
Sbjct: 56 SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYP 115
Query: 70 GVLTACSLGGLVEKGKKFFDEM 91
VL AC+ G V+ G++F E+
Sbjct: 116 FVLAACARLGAVKLGRRFHCEV 137
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ID A +F+ +P ++ SW +I+G G A+ LFE M + +
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDN 423
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ IG+L+AC +E+G+++FD + ++ + PT HYACMV LL
Sbjct: 424 VTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLL 469
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y + G I+ A +FD L K+ SW +I GY G+ + I L MR G V
Sbjct: 198 DMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQV 257
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
+ ++ A G V++ ++ F E + +++ C +++ Y + R
Sbjct: 258 TMSTIIAAYCQCGRVDEARRVFSEFKEKDI-------VCWTAMMVGYAKNGR 302
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++G I FDR+P +DS S+ T I G+ ++ LF+ M+ +G E
Sbjct: 96 LSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTE 155
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ + +L A + + GK+ + RN
Sbjct: 156 YTIVSILNASAQLSDLRYGKQIHGSIIVRN 185
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + GR+D A ++F KD W +++GY G + A+ LF M + +E +
Sbjct: 266 YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTL 325
Query: 69 IGVLTACSLGGLVEKGK 85
V+++C+ + G+
Sbjct: 326 SSVVSSCAKLASLHHGQ 342
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
L Y + G++ A +FD++ +D SW L+ Y G + F+ M D V Y
Sbjct: 65 LHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYN 124
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
+ S ++ + F MQ +PTE
Sbjct: 125 T-----TIAGFSGNSCPQESLELFKRMQREGFEPTE 155
>gi|449434412|ref|XP_004134990.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g04860-like [Cucumis sativus]
Length = 704
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GR+D A +F + ASW +LI GYG+ G + A+ + M E G++
Sbjct: 503 VDMYVKCGRMDFAENVFKSMKEPCLASWNSLISGYGLFGFHNHALLCYTEMMEKGIKPNK 562
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ G+L AC+ GGLVE+G+K+F M+ + + P H A MV +L
Sbjct: 563 ITFSGILAACTHGGLVEEGRKYFKIMKKKFGIVPESQHCASMVGML 608
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y++ G + A ++FD P KD SW LI GY G A LF MR +
Sbjct: 105 LDLYSKLGFVKAAQRLFDDFPEKDVVSWNALISGYTRCGNSHDAFKLFVEMRRREFDPCQ 164
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ + ++ +C L +GK
Sbjct: 165 RTLVSLMPSCGTQQLFVQGKS 185
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + +D +F + K SW T+I +G G A+ +F+ M E+ V
Sbjct: 206 VSMYGKCADLDGVKLLFGEITEKSVVSWNTMIGAFGQNGLFSEAMLVFKQMLEESVNANS 265
Query: 66 VSHIGVLTACSLGGLVE 82
V+ + +L+A + G +
Sbjct: 266 VTMVSILSANANTGCIH 282
>gi|242046396|ref|XP_002461069.1| hypothetical protein SORBIDRAFT_02g040130 [Sorghum bicolor]
gi|241924446|gb|EER97590.1| hypothetical protein SORBIDRAFT_02g040130 [Sorghum bicolor]
Length = 552
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A +FD + +D +W +I+G+G+ G+ AI LF M ED V
Sbjct: 346 MDMYFKCGCPSEAAAVFDAIRDRDVKAWTAMIMGFGVNGQPGSAITLFYRMEEDCVFPNG 405
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +LTAC+ GGLV++ K+F + M R + P+ HY+C++ LL
Sbjct: 406 VTFLALLTACNHGGLVQEAKEFLETMARRYRLSPSPEHYSCVIDLL 451
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R G ++ ANK+F +D ++ GY G++ AI+L + MR+ G+ +
Sbjct: 247 MYVREGSVECANKVFHETTRRDLVLCNCMVDGYAKAGQIREAIDLIDGMRQHGMRPSSGT 306
Query: 68 HIGVLTACSLGGLVEKGKKFFD 89
+GVL+AC G + G+ +
Sbjct: 307 LVGVLSACGTSGALAAGRSVHE 328
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
FY +G + + ++F+ +P KD+ SW T+I GY + ++ A+ +F AMR GV+
Sbjct: 152 FYCSSGNMADSRRMFEEMPEKDAVSWNTVIGGYVRVRDVGTALQMFTAMRWSGVD 206
>gi|225216941|gb|ACN85235.1| EMB2261 putative [Oryza minuta]
Length = 612
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +F+ V+++ +W +I G+ G + AINLF+ M +G
Sbjct: 383 VDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFTQNGHGEQAINLFKRMVREGPRPDY 442
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
+S IGVL ACS G+VE+G+ +F+ M + ++ P HY CMV LL +
Sbjct: 443 ISFIGVLFACSHTGMVEQGRNYFNSMCEDYSIAPGIEHYNCMVDLLSR 490
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A K+FDR+ V++ S L+ GY GE + I LF M + ++Y
Sbjct: 284 LDMYAKCGLMVEARKVFDRMQVRNEVSQCALLGGYCQNGEYEKVITLFREMDKVDGDWYS 343
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL AC+ V+ GK+
Sbjct: 344 LG--TVLRACAGLSSVKPGKEI 363
>gi|297740478|emb|CBI30660.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y++ GRI+ A ++FD +P K+ SW ++I GYG G + A+ LF M+ E V+
Sbjct: 324 IDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPN 383
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARN--VKPTETHYACMVYLL 110
V+ + L+AC GLV KG + M+ R+ +KP HYACMV LL
Sbjct: 384 YVTFLSALSACGHAGLVAKGWTILESME-RDYLLKPRMEHYACMVDLL 430
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G + ++++F + ++D SW L+ GY G+ + I LFE M G++
Sbjct: 413 ITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDG 472
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ IGVL+ACS GLVEKG ++F+ M + + P H C++ LL
Sbjct: 473 VTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLL 518
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ I A +F R+P K+ SW +++GYG G + A+ +F M+ +GVE
Sbjct: 312 VDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDD 371
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ V+++C+ +E+G +F
Sbjct: 372 FTLGSVISSCANLASLEEGAQF 393
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 36/132 (27%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
L Y++ G + +IF+ +P +D SW I GY G A+ +++ M +D +
Sbjct: 78 LSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLN 137
Query: 65 PVSHIGVLTACS------LG-----------------------------GLVEKGKKFFD 89
++ +L CS LG GL+ K++FD
Sbjct: 138 RITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFD 197
Query: 90 EMQARNVKPTET 101
EM RNV T
Sbjct: 198 EMPERNVVMCNT 209
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G I+ + ++F L +DS SW +I G G A+++F MR G +
Sbjct: 216 RCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGS 275
Query: 71 VLTACSLGGLVEKGK 85
VLTAC G L+ G+
Sbjct: 276 VLTAC--GSLLALGE 288
>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 757
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I+ + K F+++P K+ +W T+I YGM G A+ L M+ ++
Sbjct: 510 VDMYSKCGEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNA 569
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++++ VLTACS GGLVE G F M Q V P HY+CMV +L
Sbjct: 570 LTYLSVLTACSHGGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDML 615
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-Y 64
+D Y + I+LA ++F R +D W T+I G+ G+ D AI +F+ M E G+E
Sbjct: 409 IDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNE-GIEVPN 467
Query: 65 PVSHIGVLTACSLGGLVEKG 84
V+ I +L ACS+ +++
Sbjct: 468 AVTIINLLQACSVSAELKRS 487
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILG---YGMLGE 45
L+FY + G +D A +FD + +DS SW LI G YG L E
Sbjct: 106 LNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGALVE 148
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ A ++F +P +++ SW +L+ G + + A+ L +MR +G+E
Sbjct: 308 IDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSMRTEGIEADE 367
Query: 66 VSHIGVLTAC 75
V+ + L C
Sbjct: 368 VTLVNCLQIC 377
>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
Length = 598
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+K+F + + SW +I+G+ G A+ +F+ M GV
Sbjct: 387 IDMYAKCGSVACAHKVFQSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDDMLLKGVAPNR 446
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ I +L ACS GG V++G +F+ M+ + ++P E HYACMV LL K
Sbjct: 447 VTMICILYACSQGGFVDEGWIYFNAMEDKFGIQPGEDHYACMVDLLGK 494
>gi|222618271|gb|EEE54403.1| hypothetical protein OsJ_01428 [Oryza sativa Japonica Group]
Length = 440
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A +FDR+ KD SW ++I GYGM G + A+ LF +M GV
Sbjct: 225 VDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDH 284
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V + ++++CS GLV++G FF M N++P + Y +V LL +
Sbjct: 285 VVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLAR 332
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 13 GRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV 71
G +D A ++FD L + +ASW ++I GY G+ + LF+ M +DGVE +
Sbjct: 34 GVVD-ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIA 92
Query: 72 LTACSL 77
L AC+L
Sbjct: 93 LHACTL 98
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G +D A IF+++ KD+ +W +I+ Y G+ + ++ +FE MR + V+
Sbjct: 272 IDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDE 331
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L ACS G VE+G+K+F +M ++ + P+ HY MV LL
Sbjct: 332 ITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 377
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT +D A +FDR+ + +I GY + A++LF M+ ++
Sbjct: 171 INMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNE 230
Query: 66 VSHIGVLTACSLGGLVEKGK 85
++ + VL++C+L G ++ GK
Sbjct: 231 ITLLSVLSSCALLGSLDLGK 250
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A IF+++P KD +W T+I G+ G + A+ LF M+ + +
Sbjct: 403 IDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPND 461
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ + VL ACS GLV++G K F M+ R +++P HY C+V LL +
Sbjct: 462 VTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCR 509
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + + LA K+FD KD+ SW T+I GY +GEL++A +LF + +
Sbjct: 271 LDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDI---- 326
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
VS +++ + G K F M A NVKP
Sbjct: 327 VSWNSLISGYAQNGDYVTVKCLFTRMFAENVKP 359
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++LA +F+++P +D SW +LI GY G+ LF M + V+ V+
Sbjct: 305 YAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTI 364
Query: 69 IGVLTACSLGGLVEKGK 85
+ +++A + G +++G+
Sbjct: 365 VNLISAVAEMGALDQGR 381
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
Y G + A ++FD + ++ S+ T+ILG+ +G + + LF MR G+E
Sbjct: 173 YVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 226
>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 753
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G++D A++ F + D+ +W +I + G+ A+ LF+ M+ GV
Sbjct: 424 ITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNV 483
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMV 107
V+ IG+L ACS GLV++GK+F D M + V PT HY CM+
Sbjct: 484 VTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMI 526
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
P +DFY + R + A + F+ + + SW LI GY G+ D A+ +F+ +R GV
Sbjct: 321 PLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLL 380
Query: 64 YPVSHIGVLTACS 76
+ + ACS
Sbjct: 381 NSFIYNNIFQACS 393
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
L Y A + FD++ +D +SW T+I Y G +D A+ LF M + G+
Sbjct: 121 LQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLRMLDLGI 176
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +D A+ IF + VKD +W +I+GY G+ ++ ++AM G ++
Sbjct: 510 YAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITF 569
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
IG+L ACS GLV++G+K+F +M + +KP HYACM+ L
Sbjct: 570 IGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLF 612
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y +TG +D A +F+++ KD SW +L+ GY + ++ +F MR GV
Sbjct: 406 VDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQ 465
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112
+L+AC+ L+E GK+ + ++ +++ Y +V + K
Sbjct: 466 FIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAK 512
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 31/111 (27%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGEL------------------- 46
L+ +++G+++ A K+FD++P KD SW T+I Y +G L
Sbjct: 72 LNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWS 131
Query: 47 ------------DVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGK 85
A +LF +MR +G + + VL CS GL++ G+
Sbjct: 132 SIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE 182
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y + + A +F L K+ W ++ GY G+ A+ F M GVE
Sbjct: 204 VDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVEC 263
Query: 64 YPVSHIGVLTACS 76
+ +LTACS
Sbjct: 264 NQYTFPTILTACS 276
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A + + + D SW +L++G+ G + A+ LF+ M ++
Sbjct: 307 VDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDD 366
Query: 66 VSHIGVLTACSLGGLVEKG 84
+ VL C +G + K
Sbjct: 367 YTFPSVLNCCVVGSINPKS 385
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +FD LP + +W +I G+ + G D A+ LF M GV
Sbjct: 272 VDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDD 331
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIKYNQ 115
V+ + VLTAC+ G V +G+++ + + +R+ ++P HY CMV L + Q
Sbjct: 332 VTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQ 382
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G +D A ++FD +P ++ SW ++I GY A+ +F+ MR GVE
Sbjct: 176 RLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATS 235
Query: 71 VLTACSLGGLVEKGKKFF 88
L AC+ G + +G++ +
Sbjct: 236 ALVACTGAGALGRGREIY 253
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +F+ + V+D+ +W +I+ Y + G A++LF+ MR+ G E
Sbjct: 264 IDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDE 323
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ +G+L ACS GLVE+G ++F M+ + V P HY CMV LL
Sbjct: 324 ITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLL 369
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT +D A ++FD++ ++ +I GY + A++LF ++ ++
Sbjct: 163 INMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTD 222
Query: 66 VSHIGVLTACSLGGLVEKGK 85
V+ + VL++C+L G ++ GK
Sbjct: 223 VTMLSVLSSCALLGALDLGK 242
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94
TLI Y E+D A +F+ + E V V++ ++T + G + F E+QAR
Sbjct: 161 TLINMYTACNEMDCARRVFDKIWEPCV----VTYNAMITGYARGSRPNEALSLFRELQAR 216
Query: 95 NVKPTE 100
N+KPT+
Sbjct: 217 NLKPTD 222
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A IF+++P KD +W T+I G+ G + A+ LF M+ + +
Sbjct: 338 IDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPND 396
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
V+ + VL ACS GLV++G K F M+ R +++P HY C+V LL +
Sbjct: 397 VTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCR 444
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + + LA K+FD KD+ SW T+I GY +GEL++A +LF + +
Sbjct: 206 LDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDI---- 261
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
VS +++ + G K F M A NVKP
Sbjct: 262 VSWNSLISGYAQNGDYVTVKCLFTRMFAENVKP 294
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++LA +F+++P +D SW +LI GY G+ LF M + V+ V+
Sbjct: 240 YAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTI 299
Query: 69 IGVLTACSLGGLVEKGK 85
+ +++A + G +++G+
Sbjct: 300 VNLISAVAEMGALDQGR 316
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
Y G + A ++FD + ++ S+ T+ILG+ +G + + LF MR G+E
Sbjct: 108 YVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 161
>gi|115446089|ref|NP_001046824.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|47497329|dbj|BAD19370.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113536355|dbj|BAF08738.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|125582005|gb|EAZ22936.1| hypothetical protein OsJ_06625 [Oryza sativa Japonica Group]
Length = 603
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 3 EPR-----LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR 57
EPR +D Y++ G I+LA KIF+ + +D A W +I GY GE A+ LF+ M+
Sbjct: 390 EPRVATGLIDMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMK 449
Query: 58 EDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
G + ++ VLTAC+ GLV++G + F M ++P+ H+ CMV LL K
Sbjct: 450 NKGFQPDGIAFTHVLTACNYSGLVDEGLECFHSMTMEYGIEPSIEHHMCMVDLLCK 505
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR+ A ++FD +P SW ++ YG +++ ++ +F AMR GV
Sbjct: 94 LDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSE 153
Query: 66 VSHIGVLTAC 75
+ +GVL+ C
Sbjct: 154 GTLVGVLSGC 163
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A ++FD + + + W ++I GY G L+ A+ +F++M +E
Sbjct: 297 INLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANIEPNE 356
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
+ VL+AC+ G GKK ++ A
Sbjct: 357 ATLSSVLSACAKLGSANLGKKVEEQAIA 384
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y +TG + A KIF L +D W ++I G M G+ + A+ +F+ M ED P
Sbjct: 344 LDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDS-SLVP 402
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+++IGVL ACS GLVE+ KK F M + ++ P HY CMV LL
Sbjct: 403 DHITYIGVLFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGCMVDLL 450
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y + G +A +F+++P ++ SW ++I Y A++LF M G+
Sbjct: 243 LEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDK 302
Query: 66 VSHIGVLTACS 76
+ + VL+ C+
Sbjct: 303 ATFLSVLSVCA 313
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 7 DFYTRTGRIDL---------ANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR 57
D YT TG + + K+FD +P+ + +W LI GY + A+ +F+ M
Sbjct: 127 DAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMS 186
Query: 58 EDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
GVE ++ + L C+ + G+ ++ P
Sbjct: 187 HCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDP 227
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G ++ A +F++LP KD W LI G M G + A+ F M + G
Sbjct: 291 VDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRD 350
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLL 110
++ VLTACS G+VE+G + F+ M+ V+P HY CMV LL
Sbjct: 351 ITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLL 396
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R G A ++FDR+P ++ +W T+I GY + A+ FEA++ +GV
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVM 252
Query: 69 IGVLTACSLGGLVEKGKK 86
+GV+++C+ G + G+K
Sbjct: 253 VGVISSCAHLGALAMGEK 270
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G I+ A +F R+ D SW +I GY G+ A LF+ M E +
Sbjct: 159 VHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNL---- 214
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
V+ +++ + EK + F+ +QA V ET
Sbjct: 215 VTWSTMISGYARNNCFEKAVETFEALQAEGVVANET 250
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ +D Y + GR+D A +F R+ +D +W +I G G A+ F M+ DG
Sbjct: 405 LVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDG 464
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
+ V++I VLTACS L+ +G++ F+EM++ + P HY CM+ LL +
Sbjct: 465 FQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLAR 517
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FD++ +D ++ ++I GY G L A+ LF +R G+
Sbjct: 309 IDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADN 368
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + +LTAC+ G + +G+ ++ R V+
Sbjct: 369 FTVVSLLTACASLGALPQGRALHASIEQRIVE 400
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G +D A ++ + P ++ SW +LI GY G A+ F M DGVE V+ IG
Sbjct: 181 RWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIG 240
Query: 71 VLTACS 76
L+ACS
Sbjct: 241 ALSACS 246
>gi|218190710|gb|EEC73137.1| hypothetical protein OsI_07160 [Oryza sativa Indica Group]
Length = 603
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 3 EPR-----LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR 57
EPR +D Y++ G I+LA KIF+ + +D A W +I GY GE A+ LF+ M+
Sbjct: 390 EPRVATGLIDMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFKEMK 449
Query: 58 EDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
G + ++ VLTAC+ GLV++G + F M ++P+ H+ CMV LL K
Sbjct: 450 NKGFQPDGIAFTHVLTACNYSGLVDEGLECFHSMTMEYGIEPSIEHHMCMVDLLCK 505
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR+ A ++FD +P SW ++ YG +++ ++ +F AMR GV
Sbjct: 94 LDMYAKCGRLPDARRLFDEMPRPTLVSWNCMVAAYGRSSQVEESVAVFNAMRRAGVRPSE 153
Query: 66 VSHIGVLTAC 75
+ +GVL+ C
Sbjct: 154 GTLVGVLSGC 163
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A ++FD + + + W ++I GY G L+ A+ +F++M +E
Sbjct: 297 INLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEALVMFDSMVCANIEPNE 356
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA 93
+ VL+AC+ G GKK ++ A
Sbjct: 357 ATLSSVLSACAKLGSANLGKKVEEQAIA 384
>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
Length = 560
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A +FDR+ KD SW ++I GYGM G + A+ LF +M GV
Sbjct: 311 VDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDH 370
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V + ++++CS GLV++G FF M N++P + Y +V LL +
Sbjct: 371 VVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLAR 418
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 13 GRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV 71
G +D A ++FD L + +ASW ++I GY G+ + LF+ M +DGVE +
Sbjct: 120 GVVD-ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIA 178
Query: 72 LTACSL 77
L AC+L
Sbjct: 179 LHACTL 184
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + A +FD +P +D +W ++ GY G A+++F M G + VL
Sbjct: 17 GAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVL 76
Query: 73 TAC 75
TAC
Sbjct: 77 TAC 79
>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ + K F + K SW T++ Y G A++LF +M+E+ ++
Sbjct: 646 VDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDS 705
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET-HYACMVYLLIK 112
VS + VL+AC GLVE+GK+ F+EM R+ E HYACMV LL K
Sbjct: 706 VSFLSVLSACRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVDLLGK 753
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + GR A K F+RLP+KD+ ++ L GY +G+ + A ++++ M+ GV
Sbjct: 443 ISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDS 502
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104
+ +G+L C+ +G + ++ ++ +E H A
Sbjct: 503 RTMVGMLQTCAFCSDYARGSCVYGQI-IKHGFDSECHVA 540
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G +++A ++F + +D SW +I Y G+ D AI+LF M ++
Sbjct: 342 MSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNA 401
Query: 66 VSHIGVLTACS 76
V+ VL C+
Sbjct: 402 VTLTSVLQGCA 412
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + + A ++FD++ VKD +W T++ G G A+ LF MR V+
Sbjct: 142 VEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDH 201
Query: 66 VSHIGVLTACS 76
VS ++ A S
Sbjct: 202 VSLYNLIPAVS 212
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A K+F+ +D W ++I + GE + A+ +F M ++G++
Sbjct: 496 VDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNY 555
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL+ACS G VE G F+ M +KP HYAC+V LL
Sbjct: 556 VTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLL 600
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
+DFY++ G I+ A +FD+L K + +W T+I GY G V++ LF MRE V +
Sbjct: 193 IDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDR 252
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
Y VS VL+ACS+ +E GK+
Sbjct: 253 YVVS--SVLSACSMLEFLEGGKQ 273
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
+DFYT+ R+ K+FD++ VK+ SW T+I GY M D A+ LF M G +
Sbjct: 294 IDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY-MQNSFDWEAMKLFGEMNRLGWKPD 352
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ VLT+C +E+G++
Sbjct: 353 GFACTSVLTSCGSREALEQGRQ 374
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEYY 64
++ +++ R+D A +FD++P K+ +W +++ Y G + A+ +F + R+ G
Sbjct: 91 INVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPN 150
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ AC+ G+VEKG +
Sbjct: 151 EFVLASVIRACTQLGVVEKGAQL 173
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++ + A K+FD + ++ S+ +I GY +L A+ LF MR +
Sbjct: 395 IDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNE 454
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ ++TA S + G++F +++
Sbjct: 455 FTFAALITAASNLASLRHGQQFHNQL 480
>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
Length = 577
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G ++ + K+F R+P +S SW ++I + G+ A+ L++ MR GVE
Sbjct: 303 INMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTD 362
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + +L ACS GLVEKG +F M + + P HYAC+V +L
Sbjct: 363 VTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDML 408
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + A K+FD +P++D+ SW +I G+ G DV F+ M+ G +Y +
Sbjct: 2 YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLG--FYRLDQ 59
Query: 69 ---IGVLTAC 75
+L+AC
Sbjct: 60 ATLTTILSAC 69
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ GRI A K+FD L KD SW +I GY G A F+ M G +
Sbjct: 536 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 595
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+S++ VL+ CS GLV++GK +FD M + + P H++CMV LL
Sbjct: 596 ISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLL 641
>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
Length = 560
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G I A +FDR+ KD SW ++I GYGM G + A+ LF +M GV
Sbjct: 311 VDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDH 370
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V + ++++CS GLV++G FF M N++P + Y +V LL +
Sbjct: 371 VVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLAR 418
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 13 GRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV 71
G +D A ++FD L + +ASW ++I GY G+ + LF+ M +DGVE +
Sbjct: 120 GVVD-ARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIA 178
Query: 72 LTACSL 77
L AC+L
Sbjct: 179 LHACTL 184
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 13 GRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72
G + A +FD +P +D +W ++ GY G A+++F M G + VL
Sbjct: 17 GAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVL 76
Query: 73 TAC 75
TAC
Sbjct: 77 TAC 79
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + GR++ A F ++ V+D +W +I G G A+ F M+ DG
Sbjct: 412 LDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANS 471
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V++I VLTACS L+++G+ +FDEM+ N++P HY CM+ LL
Sbjct: 472 VTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLL 517
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A +FD++ D ++ +LI GY G L A+ LF MR G+
Sbjct: 311 IDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADN 370
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +G+LTA + G + +G+ ++ R V+
Sbjct: 371 FTMVGLLTASASLGALPQGRALHACIEQRLVE 402
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
+ G +D A ++ R PV++ +W LI GY G A++ F +M DG+ V+ I
Sbjct: 182 AKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVI 241
Query: 70 GVLTAC 75
G+L+AC
Sbjct: 242 GMLSAC 247
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
P + Y G A + FD VKD +W T+I G +G LD A L V
Sbjct: 144 SPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNV- 202
Query: 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
V+ G+++ S G + F+ M + + P E
Sbjct: 203 ---VTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEV 238
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y + G A ++FD L + W +I GY +G +D+A +LF+ M + V
Sbjct: 279 IDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDV--- 335
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQ 92
++ ++T GG + + F +M+
Sbjct: 336 -ITFNSLITGYIHGGRLREALLLFTKMR 362
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ A ++F+ +P K+ SW +I G G+ ++ +LFE M GV
Sbjct: 256 VDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPND 315
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
+ +GVL+ C+ GLVE+G+ F M ++P H+ CMV LL +
Sbjct: 316 ATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLAR 363
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKD-----SASWITLILGYGMLGELDVAINLFEAMREDG 60
+D YT GR++ A K+FD + +D SW ++I G G A+ LF M + G
Sbjct: 149 IDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHG 208
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGK 85
E + + +L C+ G V+ G+
Sbjct: 209 FEPDDATVVTILPVCARLGAVDVGE 233
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y++ G ++ A+KIF+ +PV +D W +I GYGM G + A++LF+ M + GV+
Sbjct: 466 IDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKP 525
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ VL +CS G+V+ G F M + P + HY CMV LL
Sbjct: 526 NDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLL 573
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +FD + +D SW ++I GY + G+ A++LF+ M+ +G+
Sbjct: 264 VDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNS 323
Query: 66 VSHIGVLTACS 76
V+ +L AC+
Sbjct: 324 VTIALILLACA 334
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ L Y G ++ A K+FD + K SW T+I GY G + A+ +F M + G
Sbjct: 159 VLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSG 218
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKK 86
VE S + VL AC +E G++
Sbjct: 219 VEIDGASVVSVLPACGYLKELEVGRR 244
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G + A IF+ + K+ SW +I G GE +V +NLFE M G E
Sbjct: 281 VDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPND 340
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ +GVL C+ GLV++G+ F M + V P HY C+V LL
Sbjct: 341 STFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLL 386
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y R+ A+K+FD + D W +I G+ +G+L+ + +F M+E V
Sbjct: 148 LEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTV---- 203
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS +++ + EK + F+EM + +P +
Sbjct: 204 VSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDA 239
>gi|226507810|ref|NP_001148280.1| selenium-binding protein [Zea mays]
gi|195617122|gb|ACG30391.1| selenium-binding protein [Zea mays]
Length = 504
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT+ G + A+ +F+ + ++ +W +I+GY G + A+ LF+ M++ V
Sbjct: 251 VNMYTKCGEVSYASCLFENMAARNVWTWSAMIMGYSQNGMVREALELFDRMKDASVAPNY 310
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ +G+L CS GLV +G+KFF EM+ +KP THY+ MV +L
Sbjct: 311 VTFLGLLCGCSHAGLVNEGRKFFHEMEHVYGIKPMMTHYSAMVDVL 356
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+++F + KD ++W +++ G + G + +I++FE M + V
Sbjct: 289 IDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDE 348
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GG+V+KG++FF+ MQ + V+P HY CMV +L
Sbjct: 349 ITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDML 394
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + LA ++FD++P +D SW +I GY G A+ LFE M+ G + V+
Sbjct: 189 YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTM 248
Query: 69 IGVLTACSLGGLVEKGKKF---FDEMQARNVKP 98
+ +L+AC+ G ++ G++ +M +RN P
Sbjct: 249 LSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP 281
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G I A +FD PVKD SW +I Y G++ +A LF+ + E V + V
Sbjct: 159 ARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMIS 218
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNVKP 98
G + S +E F++MQ KP
Sbjct: 219 GYVRCGSHLHALE----LFEQMQRMGEKP 243
>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 804
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + GRI+ IF+ +P KD W ++I GYG+ G D A+ F M GV+
Sbjct: 354 IDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNE 413
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V I VL+ACS GL +G F M+ + + P HYACMV L+
Sbjct: 414 VVFISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKLPHYACMVDLI 459
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 20 KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79
KIF++ P+KD W ++ G+ A +F AM+ DGVE VS + +L AC+ G
Sbjct: 65 KIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVG 124
Query: 80 LVEKGKK 86
+ GK+
Sbjct: 125 ALLFGKE 131
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y + G ++ A +FD+L KD SW +I + A+ F+ M+
Sbjct: 253 LQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNE 312
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
++ + +L ACSL G E G + +QA K
Sbjct: 313 ITFVSLLQACSLIGAQELG----ESIQAHATK 340
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R G ++ A ++FD++ + SW ++I+G+ G ++ F M+E+G +
Sbjct: 223 IDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNA 282
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYL 109
V+ G LTACS GLV++G +FF M+ N+ P HY C+V L
Sbjct: 283 VTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDL 327
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ GR+ A +FD + K+S +W T+I GY G++ A+ LF+ M E +
Sbjct: 91 LGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDL---- 146
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
+S ++ G E+ +F EMQ VKP
Sbjct: 147 ISWTAMVNGFVKKGFHEEALVWFREMQISGVKP 179
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y R+G++ A K+FD++P D SW ++ G+ G + A+ F M+ GV+
Sbjct: 122 IDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDY 181
Query: 66 VSHIGVLTACS-LGGL 80
V+ I L AC+ LG L
Sbjct: 182 VAIIAALNACTNLGAL 197
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y++ G ++ A +IF L +D +W +I+G+ M G A++LF M ED V
Sbjct: 339 IDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 398
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V +GVLTACS GGLVE+G F M + N+ P HY CMV LL
Sbjct: 399 EVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLL 445
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A ++F+R+P ++ W ++I G G A++LF M+ GV+
Sbjct: 238 VSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADD 297
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ V+++C G ++ G+
Sbjct: 298 ATIATVVSSCGQMGALDLGR 317
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
++ Y+ A + D P D SW T+I GY G + A+ F M ++ V
Sbjct: 135 INMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRL 194
Query: 64 YPVSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ G ++ G
Sbjct: 195 DEVTLLNVLVACARTGAMKVGS 216
>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
Length = 1112
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G ID A+++F + ++ SW ++I G+ G + + F M ++GV+
Sbjct: 516 ISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNE 575
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+++ +L+ACS GLV +G + F+ M + +KP HYACMV LL +
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623
>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 623
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-RED 59
++ L+ Y++ GR++ + K+F+ + D +W ++ GY M G AI FE + RE+
Sbjct: 287 IVTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREE 346
Query: 60 GVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
G+E V+ +L+ACS GLV++GK FF M V+P HY+CMV LL
Sbjct: 347 GMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLL 398
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG-VEYYPVS 67
Y + G A +FD +P KD SW +L+ G +G+L +++F M+ D ++ +
Sbjct: 90 YLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFT 149
Query: 68 HIGVLTAC 75
+ V++AC
Sbjct: 150 FLSVISAC 157
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G + A ++F + ++ S+ ++ILG+ M G + A+ LF+ M + ++
Sbjct: 323 IDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNR 382
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110
V+ IGVLTACS G+VE+G + F+ M+ +KP+ HY CMV LL
Sbjct: 383 VTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLL 428
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y ++G ++ A ++FD LPVKD +W ++ G+ + AI FE M+E GVE ++
Sbjct: 223 YVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITL 282
Query: 69 IGVLTACS 76
IGV++AC+
Sbjct: 283 IGVISACA 290
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
YT+ G +D IF R+P +D SW +I G G + A+ LFE M +G++ PV+
Sbjct: 466 YTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTF 525
Query: 69 IGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
+ +L+ACS GLV++G ++F M N+ P HYACMV +L +
Sbjct: 526 VNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSR 570
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L+ Y +TG + A K+FDR+P +++ SW T+I GY D A+ +FE MR +
Sbjct: 160 LNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNE 219
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ VL+A + V G++
Sbjct: 220 FALTSVLSALTSDVFVYTGRQ 240
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +D A + F+ K+S +W ++ GY G+ D A+ LF M GV +
Sbjct: 264 YAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTL 323
Query: 69 IGVLTACSLGGLVEKGKK 86
+GV+ ACS V +GK+
Sbjct: 324 VGVINACSDLCAVVEGKQ 341
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A K F+ + D W ++I GY G+ + +NL+ M+ + V
Sbjct: 362 VDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNE 421
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
++ VL ACS +++GK +M AR +K
Sbjct: 422 LTMASVLRACSSLAALDQGK----QMHARIIK 449
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G +D A +FD + K + SW +++ GYGM G A+++F+ MR+ G
Sbjct: 415 INMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDD 474
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ + VL ACS G+V++G +FD M A + P HYA + LL ++ +
Sbjct: 475 ITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 525
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+ + KD SW ++ GY G A LF+ MR++ +
Sbjct: 162 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 221
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ V+ S G + F +M
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQM 247
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + G ++ A ++F+ +P K+ SW +I G G+ ++ +LFE M GV
Sbjct: 282 VDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPND 341
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIK 112
+ +GVL+ C+ GLVE+G+ F M ++P H+ CMV LL +
Sbjct: 342 ATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLAR 389
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D YT GR++ A K+FD + +D W +I G+ +G++++ LF MR+ V
Sbjct: 149 IDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSV---- 204
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
VS ++ G + + F EM +P +
Sbjct: 205 VSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDA 240
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ GRI A K+FD L KD SW +I GY G A F+ M G +
Sbjct: 546 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 605
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+S++ VL+ CS GLV++GK +FD M + + P H++CMV LL
Sbjct: 606 ISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLL 651
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
++ Y + G + A ++FDR+P +D ASW TL+ GY F+A R DG+E +
Sbjct: 78 MNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGY------------FQARRFLDGLETF 125
Query: 65 PVSH 68
H
Sbjct: 126 VSMH 129
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A IFD++ + D SW +I+GY + G AI+LF+ M +GV+
Sbjct: 379 VDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNY 438
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VLTACS GLV++ K+F+ M Q + P HYA + LL
Sbjct: 439 VAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL 484
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + R+D + ++F LP D SW ++I G G D + F+ M ++
Sbjct: 278 IDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNH 337
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
VS ++ AC+ + GK+
Sbjct: 338 VSFSSIMPACAHLTTLHLGKQL 359
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G D A+K+F + ++ SW ++I+ + + G+ + + LFE ++ +
Sbjct: 418 IDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDE 477
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIK 112
++ +G+L+ACS GLV +G+++F EM+ ++P HYACM+ LL K
Sbjct: 478 ITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGK 525
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + G ++ A ++FD +P +++ SW +I Y + + A+ LF+AM E+GVE
Sbjct: 316 VNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPIN 375
Query: 66 VSHIGVLTACSLGGLVEKGKKFFD 89
+ VL+AC+ G ++ G+ +D
Sbjct: 376 AGLVSVLSACAQLGCLDLGRWIYD 399
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+ FY + A +FD +P +D SW TL+ GY G D A +F M G++
Sbjct: 183 VHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPN 242
Query: 65 PVSHIGVLTACSLGGLVEKGKKFF 88
V+ + V++A GL+ G+ +
Sbjct: 243 EVTLVAVVSAMGQMGLLAFGRMVY 266
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ GRI A K+FD L KD SW +I GY G A F+ M G +
Sbjct: 546 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 605
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+S++ VL+ CS GLV++GK +FD M + + P H++CMV LL
Sbjct: 606 ISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLL 651
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ Y + G + A ++FDR+P +D ASW TL+ GY + F +M G
Sbjct: 78 MNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSG 132
>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G I+ A K FD P S +W +LI GY G +A++LF M++ V+ ++
Sbjct: 350 YSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITF 409
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ VLTACS GLVE+G F M++ + P HYACM+ LL
Sbjct: 410 VAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLL 452
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I +A+K+F +D+ SW T+I G+ LG + A+ ++M+ G S
Sbjct: 44 YAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSF 103
Query: 69 IGVLTACSLGGLVEKGKKFFDEM 91
+L + G VE G++ M
Sbjct: 104 GSILKGVACVGYVEVGQQVHSMM 126
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
LD Y + R++ A ++F + +++S +W LI GY +G+ A L + M +GVE
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVE 198
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 9 YTRTGRIDLANKIFD-RLPVKD--SASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
Y+ G I+ A ++FD + +D SW +++ G+ G + A+ FE MR V ++
Sbjct: 246 YSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDH 305
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
Y S VL +CS ++ G++
Sbjct: 306 YAFS--AVLRSCSDLATLQLGQQ 326
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G++ A +F+ +P + + W +I G G+ G A++LF M+++ ++
Sbjct: 414 IDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDH 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPTETHYACMVYLLIKYNQ 115
V+ + +L ACS GLV++G+ FFD MQ + P HY CMV +L + Q
Sbjct: 474 VTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQ 524
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y + +ID A K+FD LP +D SW TLI GY G + AI ++ M +G++
Sbjct: 312 VDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPI 371
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ + VL A S G +++G + M A ++K
Sbjct: 372 QGTFVSVLPAYSYLGGLQQGMR----MHALSIK 400
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+ +F + ++D +W ++I G++ A+ LF M E GV P
Sbjct: 210 IDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGV--CP 267
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VLT SL V + DE+ A++V
Sbjct: 268 ----DVLTLVSLASAVAQCG---DELGAKSV 291
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R GR+ A ++FD +P +D +W ++ G A+ L M +GV V+
Sbjct: 112 YLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTL 171
Query: 69 IGVLTACSLGG 79
VL C + G
Sbjct: 172 SSVLPMCVVLG 182
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I A +F +P +++ +W +LI GY G + AI LF M E +
Sbjct: 1117 VDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDH 1176
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ VL ACS G+VE G+ F +MQ + ++P HYACMV LL
Sbjct: 1177 LTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLL 1222
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ YT+ G ++ A ++F ++ D SW ++I Y G+ AI L M E+G +
Sbjct: 459 IEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTS 518
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIKYNQ 115
+ + VL+ACS GLV++G++FF M Q +++P ETH +CMV +L + Q
Sbjct: 519 XTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQ 569
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ G ++ A +F+ L ++ SW I G+ G+ A+ F MRE G+E
Sbjct: 256 LTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNE 315
Query: 66 VSHIGVLTAC 75
+ VL +C
Sbjct: 316 FTFSIVLASC 325
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FYT G++ A K+FD++P + WI L G + A++ F M+++G+
Sbjct: 845 MSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQ 904
Query: 66 VSHIGVLTAC 75
+L AC
Sbjct: 905 FVLPSILKAC 914
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
+I + Y++ G ++ A ++FD + KD ++ GY G + A+BL + M++ G
Sbjct: 941 IISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAG 1000
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98
V+ VS ++ S G + F M A V+P
Sbjct: 1001 VKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEP 1038
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +++D++ D+A+ LI Y G A +F + G
Sbjct: 155 IDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNH 214
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ +L C +++GK+
Sbjct: 215 YTYSTMLAVCGTISAIQEGKQL 236
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y+ G +D A K F ++ + SW LI GY + +++ A+ F M ++ V
Sbjct: 357 IDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACN 416
Query: 65 PVSHIGVLTACS 76
++ + ACS
Sbjct: 417 EFTYSNIFKACS 428
>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G ID A +F+R +D SW ++I GY G AI F M G++
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDG 603
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
V+ + V+ C+ GLV +G+++FD M + + PT HYACMV L
Sbjct: 604 VTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDL 648
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + ++F+ +P K+ +W +L+ G + LF MR +G+ P
Sbjct: 142 VDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNP 201
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ VL+A + G ++ G++ + A++VK
Sbjct: 202 FTFASVLSAVASQGALDLGQR----VHAQSVK 229
>gi|357112135|ref|XP_003557865.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Brachypodium distachyon]
Length = 521
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR----EDGV 61
LD Y++ GR++ A K+FD + ++ +W ++I GYG G + A+ LF MR + GV
Sbjct: 306 LDMYSKCGRVEDARKVFDGMADRNVITWTSMIDGYGKNGLSEEALELFGEMRRRQQQRGV 365
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQKAR 118
+ + + L+AC+ GL+ +G++ + M+ ++KP HYACMV LL ++ R
Sbjct: 366 KPNHATFLSALSACARAGLMSQGQEILESMEREYSLKPRMEHYACMVDLLGRFGSVRR 423
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYY 64
+D Y++ G ++ A +IF L +D +W +I+G+ M G A++LF M ED V
Sbjct: 251 IDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 310
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V +GVLTACS GGLVE+G F M + N+ P HY CMV LL
Sbjct: 311 EVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLL 357
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G ++ A ++F+R+P ++ W ++I G G A++LF M+ GV+
Sbjct: 150 VSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADD 209
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ V+++C G ++ G+
Sbjct: 210 ATIATVVSSCGQMGALDLGR 229
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
++ Y+ A + D P D SW T+I GY G + A+ F M ++ V
Sbjct: 47 INMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRL 106
Query: 64 YPVSHIGVLTACSLGGLVEKGK 85
V+ + VL AC+ G ++ G
Sbjct: 107 DEVTLLNVLVACARTGAMKVGS 128
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D + + G ++ A+ IFD V KD SW +I G+ M G + A+ LF M++ G
Sbjct: 365 MDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPD 424
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I VL+AC+ GLVE+G++FF M+ +KP HY CMV LL
Sbjct: 425 AVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLL 471
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G +D A +FD +P KD+ SW T++ GY GE + A LF+ M V VS
Sbjct: 207 RQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNV----VSWST 262
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNV 96
V++A G +E + FD+M A+N+
Sbjct: 263 VVSAYCKKGDMEMARVIFDKMPAKNL 288
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A ++F R+P ++ SW T++ Y G++++A +F+ M + +
Sbjct: 233 LDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWT 292
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ +++AC+ GLVE+ + F EM
Sbjct: 293 I----MVSACAQKGLVEEAGRLFTEM 314
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +++A IFD++P K+ +W ++ G ++ A LF M + +E ++
Sbjct: 267 YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAV 326
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +L AC+ G + GK+ ++ R +
Sbjct: 327 VSILAACAESGSLALGKRIHRHVRQRKLS 355
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ + A K+FD + +D SW T + GE+D A ++F+ M E
Sbjct: 171 IDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDT---- 226
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS +L + G EK + F M RNV
Sbjct: 227 VSWNTMLDGYAKAGEAEKAFELFQRMPGRNV 257
>gi|225216963|gb|ACN85255.1| EMB2261 putative [Oryza officinalis]
Length = 622
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +F+ V+++ +W +I G+ G + AINLF M +G
Sbjct: 382 VDLYAKCGAVDYAYSVFEASTVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDY 441
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
+S IGVL ACS G+VE+G+ +F+ M + + P HY CMV LL +
Sbjct: 442 ISFIGVLFACSHTGMVEQGRNYFNSMCKDYGIAPGIEHYNCMVDLLSR 489
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A K+FDR+ V++ S L+ GY GE + I LF M ++ ++Y
Sbjct: 283 LDMYAKCGLMVEARKVFDRMQVRNEVSRCALLGGYCQNGEYEKVIALFREMDKEDGDWYS 342
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL AC+ V+ GK+
Sbjct: 343 LG--TVLRACAGLSSVKPGKEI 362
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 64/113 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F + +D +W +I+ Y G AI+LFE M++ G++
Sbjct: 276 VDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDD 335
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118
++ +G+L ACS GLV +G ++FD+M+ + P HY C+ LL + Q R
Sbjct: 336 ITFLGLLYACSHSGLVSEGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLER 388
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G ++ A +F + + S+ ++I+G+ + G AI LF M E+G++
Sbjct: 285 IDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNH 344
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ +G+ TACS G+VE+G++ F M + V PT HYACM LL
Sbjct: 345 VTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLL 390
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y R+G +D A ++F LPVKD +W +++ GY A+ F MRE GV ++
Sbjct: 185 YARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITL 244
Query: 69 IGVLTACSLGGL 80
+G ++AC+ G+
Sbjct: 245 VGAISACAQLGV 256
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y + G +D A K+FD +P +D +W LI+ Y G++D A LF + +
Sbjct: 151 IHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDM---- 206
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
V+ ++T S + +K +FF +M+ V E
Sbjct: 207 VAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDE 241
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A IF + +D +W +I+G + G + A+++F M + +
Sbjct: 414 IDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDE 473
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
+++IGVL+AC+ GLV+KG+K+F M +++ ++P HY C+V LL +
Sbjct: 474 ITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLAR 521
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+T G ID+A FD++P KD SW +I GY A+ LF M+ V+ +
Sbjct: 316 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 375
Query: 69 IGVLTACSLGGLVEKG---KKFFDEMQARN 95
+ VLTAC+ G +E G + + D + +N
Sbjct: 376 VSVLTACAHLGALELGEWIRTYIDRNKIKN 405
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G +D A IF + +D SW T++ G+ LGE+DVA N F+ M E
Sbjct: 282 IDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY---- 337
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++ ++ + F MQA NVKP E
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDE 372
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G++D A +FD P D +W +I Y +G+ + + LF M + V
Sbjct: 181 VQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTT 240
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + VL+ACS + GKK
Sbjct: 241 VTLVLVLSACSKLKDLRTGKK 261
>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
Length = 626
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A +F+ V+++ +W +I G+ G + AINLF+ M +G
Sbjct: 384 VDLYAKCGAVDYAYTVFEASTVRNTITWNAMIGGFAQNGHGERAINLFDRMVREGPRPDY 443
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+S + VL ACS G+VE+G+K+F+ M + P HY CMV LL +
Sbjct: 444 ISFVSVLFACSHTGMVEQGRKYFNSMSNNYTIAPGIEHYNCMVDLLSR 491
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A K+FDR+ V++ SW L+ GY GE + + LF M + ++Y
Sbjct: 285 LDMYAKCGSMVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDKKDGDWYS 344
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ VL AC+ V+ GK+
Sbjct: 345 LG--TVLRACAGLSSVKPGKEI 364
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 59/105 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A K+F+ +D W ++I + GE + A+ +F M ++G++
Sbjct: 575 VDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNY 634
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110
V+ + VL+ACS G VE G F+ M +KP HYAC+V LL
Sbjct: 635 VTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLL 679
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EY 63
+DFY++ G I+ A +FD+L K + +W T+I GY G V++ LF MRE V +
Sbjct: 171 IDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDR 230
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
Y VS VL+ACS+ +E GK+
Sbjct: 231 YVVS--SVLSACSMLEFLEGGKQ 251
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDV-AINLFEAMREDGVEYY 64
+DFYT+ R+ K+FD++ VK+ SW T+I GY M D A+ LF M G +
Sbjct: 272 IDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY-MQNSFDWEAMKLFGEMNRLGWKPD 330
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ VLT+C +E+G++
Sbjct: 331 GFACTSVLTSCGSREALEQGRQ 352
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLF-EAMREDGVEYY 64
++ +++ R+D A +FD++P K+ +W +++ Y G + A+ +F + R+ G
Sbjct: 69 INVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPN 128
Query: 65 PVSHIGVLTACSLGGLVEKGKKF 87
V+ AC+ G+VEKG +
Sbjct: 129 EFVLASVIRACTQLGVVEKGAQL 151
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y ++ + A K+FD + ++ S+ +I GY +L A+ LF MR V +P
Sbjct: 373 IDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR---VRLFP 429
Query: 66 VSHIGVLTACSLGGL 80
S +LT SL G+
Sbjct: 430 PS---LLTFVSLLGV 441
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A+++F + KD ++W +++ G + G + +I++FE M + V
Sbjct: 319 IDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDE 378
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
++ + VL ACS GG+V+KG++FF+ MQ + V+P HY CMV +L
Sbjct: 379 ITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDML 424
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G + LA ++FD++P +D SW +I GY G A+ LFE M+ G + V+
Sbjct: 219 YAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTM 278
Query: 69 IGVLTACSLGGLVEKGKKF---FDEMQARNVKPT 99
+ +L+AC+ G ++ G++ +M +RN P
Sbjct: 279 LSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPV 312
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69
R G I A +FD PVKD SW +I Y G++ +A LF+ + E V + V
Sbjct: 189 ARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMIS 248
Query: 70 GVLTACSLGGLVEKGKKFFDEMQARNVKP 98
G + S +E F++MQ KP
Sbjct: 249 GYVRCGSHLHALE----LFEQMQRMGEKP 273
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-REDGVEYY 64
+D Y + G ++ A ++F +P ++ +W +I GY +G+ A+ +F+AM R G
Sbjct: 358 VDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPN 417
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQKAR 118
++ + V+TACS GGL + G + FD M+ R V+P HYAC+V LL + + R
Sbjct: 418 HITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEER 472
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+DFY + A +FD + V++S SW ++I+ Y G + A+ ++ R G E
Sbjct: 257 VDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTD 316
Query: 66 VSHIGVLTACS 76
VLT C+
Sbjct: 317 FMVSSVLTTCA 327
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G A IF + ++ SW ++I GY + G+ A++L+E M E+ ++
Sbjct: 364 VDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDS 423
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLL 110
V+ +GVL+AC GLVE+GK++F M ++ ++PT HYACMV L
Sbjct: 424 VTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLF 469
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV 66
D Y R G ID A ++FDR+ +++ +W +I GY + + I+LF M+ ++ V
Sbjct: 198 DLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQV 257
Query: 67 SHIGVLTACSLGGLVEKGKKFFDEMQARN 95
+ VL A G +++ +K F E++ ++
Sbjct: 258 TASSVLGAYIQAGYIDEARKVFGEIREKD 286
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y ++G ++ IFD +P +DS S+ T+I G+ G A+ +F M+++G++
Sbjct: 96 LSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTE 155
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+H+ VL AC+ + +GK+
Sbjct: 156 YTHVSVLNACTQLLDLRRGKQI 177
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAM-----REDG 60
L Y + G ID A K+F + KD W +I+G G+ + A+ LF M R DG
Sbjct: 263 LGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDG 322
Query: 61 VEYYPVSHIGVLTACS-----LGGLVEKGKKFF 88
Y +S V+++C+ G V GK F
Sbjct: 323 ---YTIS--SVVSSCAKLASLYHGQVVHGKAFL 350
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D A IF + +D +W +I+G + G + A+++F M + +
Sbjct: 393 IDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDE 452
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARN-VKPTETHYACMVYLLIK 112
+++IGVL+AC+ GLV+KG+K+F M +++ ++P HY C+V LL +
Sbjct: 453 ITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLAR 500
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G +D A IF + +D SW T++ G+ LGE+DVA N F+ M E
Sbjct: 261 IDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY---- 316
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100
VS ++ ++ + F MQA NVKP E
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDE 351
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+T G ID+A FD++P KD SW +I GY A+ LF M+ V+ +
Sbjct: 295 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 354
Query: 69 IGVLTACSLGGLVEKG---KKFFDEMQARN 95
+ VLTAC+ G +E G + + D + +N
Sbjct: 355 VSVLTACAHLGALELGEWIRTYIDRNKIKN 384
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y G++D A +FD P D +W +I Y +G+ + + LF M + V
Sbjct: 160 VQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTT 219
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
V+ + VL+ACS + GKK
Sbjct: 220 VTLVLVLSACSKLKDLRTGKK 240
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y++ G +D A +FD + K + SW +++ GYGM G A+++F+ MR+ G
Sbjct: 522 INMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDD 581
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
++ + VL ACS G+V++G +FD M A + P HYA + LL ++ +
Sbjct: 582 ITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 632
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A K+F+ + KD SW ++ GY G A LF+ MR++ +
Sbjct: 269 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 328
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
V+ V+ S G + F +M
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVFRQM 354
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y+R G ID A +F+R +D SW ++I GY G AI F M G++
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDG 603
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
V+ + V+ C+ GLV +G+++FD M + + PT HYACMV L
Sbjct: 604 VTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDL 648
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + ++F+ +P K+ +W +L+ G + LF MR +G+ P
Sbjct: 142 VDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNP 201
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ VL+A + G ++ G++ + A++VK
Sbjct: 202 FTFASVLSAVASQGALDLGQR----VHAQSVK 229
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV-KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D + + G ++ A+ IFD V KD SW +I G+ M G + A+ LF M++ G
Sbjct: 437 MDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPD 496
Query: 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ I VL+AC+ GLVE+G++FF M+ +KP HY CMV LL
Sbjct: 497 AVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLL 543
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG 70
R G +D A +FD +P KD+ SW T++ GY GE + A LF+ M V VS
Sbjct: 279 RQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNV----VSWST 334
Query: 71 VLTACSLGGLVEKGKKFFDEMQARNV 96
V++A G +E + FD+M A+N+
Sbjct: 335 VVSAYCKKGDMEMARVIFDKMPAKNL 360
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G + A ++F R+P ++ SW T++ Y G++++A +F+ M + +
Sbjct: 305 LDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWT 364
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM 91
+ +++AC+ GLVE+ + F EM
Sbjct: 365 I----MVSACAQKGLVEEAGRLFTEM 386
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G +++A IFD++P K+ +W ++ G ++ A LF M + +E ++
Sbjct: 339 YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAV 398
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ +L AC+ G + GK+ ++ R +
Sbjct: 399 VSILAACAESGSLALGKRIHRHVRQRKLS 427
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ + A K+FD + +D SW T + GE+D A ++F+ M E
Sbjct: 243 IDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDT---- 298
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
VS +L + G EK + F M RNV
Sbjct: 299 VSWNTMLDGYAKAGEAEKAFELFQRMPGRNV 329
>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Vitis vinifera]
Length = 829
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y++ G I+ A K FD P S +W +LI GY G +A++LF M++ V+ ++
Sbjct: 451 YSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITF 510
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
+ VLTACS GLVE+G F M++ + P HYACM+ LL
Sbjct: 511 VAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLL 553
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G I +A+K+F +D+ SW T+I G+ LG + A+ ++M+ G S
Sbjct: 44 YAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSF 103
Query: 69 IGVLTACSLGGLVEKGKKFFDEM 91
+L + G VE G++ M
Sbjct: 104 GSILKGVACVGYVEVGQQVHSMM 126
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62
LD Y + R++ A ++F + +++S +W LI GY +G+ A L + M +GVE
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVE 198
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV--EYYPVS 67
+ + +D A IF+ L KD SW +++ G+ G + A+ FE MR V ++Y S
Sbjct: 351 SHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFS 410
Query: 68 HIGVLTACSLGGLVEKGKK 86
VL +CS ++ G++
Sbjct: 411 --AVLRSCSDLATLQLGQQ 427
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D + + G ++ A K+F +P +D +LI G + G A+ LF M ++G+
Sbjct: 342 IDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDT 401
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ +LTACS GGL+E G FFD M+ + +V P+ HYACMV LL + Q
Sbjct: 402 VAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQ 452
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ FY + I A K+FD +P ++ SW ++ GY +G+L+ A +FE M E + +
Sbjct: 147 ISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWN 206
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96
G+ A L G +K FDEM RNV
Sbjct: 207 AMISGLGKAGDLSG----ARKVFDEMVERNV 233
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y G ++ A ++F+R+P ++ SW +I G G G+L A +F+ M E V VS
Sbjct: 181 YASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNV----VSF 236
Query: 69 IGVLTACSLGGLVEKGKKFFDEMQARNV 96
++ + G + + FDE ++V
Sbjct: 237 TVMIDGYAKVGDMASARALFDEAPEKDV 264
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + A +FD P KD +W LI GY + + A+ +F M V+
Sbjct: 240 IDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDE 299
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102
+ +++ACS G + K + ++ + H
Sbjct: 300 FIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAH 336
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A IFD++PV++ +W ++I G+ G + A+ +F M ++G++
Sbjct: 461 VDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDY 520
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+S IG+L ACS GLV++G+++F M + +K HY+CMV LL
Sbjct: 521 ISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLL 566
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + + +IFDR+P+K+S SW L+ GY G+ I +F M + V+ Y
Sbjct: 364 VDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK--VDLYC 421
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
I L C+ V +GK+
Sbjct: 422 FGTI--LRTCAGLAAVRQGKE 440
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 20 KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79
K+FD L VKD SW ++I GY +G+ ++ LF M GVE + V+ ACS G
Sbjct: 175 KVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELG 234
Query: 80 LVEKGKKF 87
++ G+ F
Sbjct: 235 DLKLGRIF 242
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
+D + R +D A ++FD L D+ W ++I D A+ F +M+ D G+
Sbjct: 262 IDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPD 321
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ VLTAC G +++GK+
Sbjct: 322 GFTFGTVLTACGNLGRLKQGKE 343
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A +F++LP KD W +I G M G+ ++NLF M V+
Sbjct: 348 VDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNG 407
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL+AC+ GGLV++G + F M ++P HY CMV LL
Sbjct: 408 VTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLL 453
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G D A K+F+ +P ++ SW LI GY A+ +F+ M +G+E
Sbjct: 247 VDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQ 306
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ LTAC+ G +++G+
Sbjct: 307 STVTSALTACAQLGSLDQGR 326
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ G +D + ++F KD SW LI G G A+ F MR GVE V+
Sbjct: 148 FAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTI 207
Query: 69 IGVLTACSL-----------GGLVEKGKKFFD 89
+ VL A ++ G VE G+ +D
Sbjct: 208 VSVLCAAAMLRDVWFGRWVHGFYVESGRVIWD 239
>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
Length = 667
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A +F LP KD +W T+I GYG+ G AI L++ M E G +
Sbjct: 454 IDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNT 513
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK---PTETHYACMVYLL 110
V+ +L ACS G++++G K F +M RNV P HY+C+V +L
Sbjct: 514 VTIATLLYACSHAGMIDEGIKVFKDM--RNVHGLMPNGEHYSCLVDML 559
>gi|225436126|ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 313
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGV 61
I + Y++ G + A K+FDR+ ++ +W ++ GYG+ G LF+ M + G
Sbjct: 146 INALISMYSKCGDLAAARKVFDRMTERNLVTWSAMMAGYGVHGVFGEVFELFDGMVDAGE 205
Query: 62 EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ VL ACS GG +E G+K+F M+ R V+P HY CMV +L
Sbjct: 206 VPDGVTFTAVLAACSHGGFMENGRKYFGMMEERFGVRPRLEHYTCMVDML 255
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y R G ID A +F+R +D SW ++I GY G A++ F M G+E +
Sbjct: 546 MYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGAT 605
Query: 68 HIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYL 109
+ V+ C+ GLV++G+++FD M N+ PT HY+CMV L
Sbjct: 606 FLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDL 648
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ +F+ +P ++ +W +L+ GY + LF MR +GV P
Sbjct: 142 VDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNP 201
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97
+ VL+A + G V+ G++ + A++VK
Sbjct: 202 FTFTSVLSAVASQGAVDLGRR----VHAQSVK 229
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64
+D Y++ G +D A IF +P ++ SW +I G ++ +A LF MRED V+
Sbjct: 344 MDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPN 403
Query: 65 PVSHIGVLTA 74
++ VLTA
Sbjct: 404 EFTYSTVLTA 413
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
L Y++ G + A IF + KD +W ++ Y G+ D A N+F M G++
Sbjct: 442 LASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNE 501
Query: 66 VSHIGVLTAC-SLGGLVEKGKKF 87
+ + AC S +++G++F
Sbjct: 502 FTISSAIDACASPTAGIDQGRQF 524
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F+ L +D+ +W T+I GY G+ + A+ F M ++G+
Sbjct: 659 VDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDG 718
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ G+L+ACS GLVE+GK+ F+ M + + PT H ACMV +L
Sbjct: 719 VTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDIL 764
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + ++ A+ F+RL V+D +W +I Y + + A+N F M+++GV+
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
+ G L+ CS +E G++
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQL 639
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+LA+K+F +P ++ +W L+ GY G++ + LF +M E V+
Sbjct: 255 VDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNE 314
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ VL C+ +++G+
Sbjct: 315 FTLTTVLKGCANSKNLKQGQ 334
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
++ Y + A + ++P +D SW LI G G + +I LF+ M+ +G+
Sbjct: 154 VNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNE 213
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ L ACSL ++ GK+
Sbjct: 214 FTLATGLKACSLCMALDLGKQ 234
>gi|296086392|emb|CBI31981.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G ++ A +F+R+ +KD SW +I GYG+ G+ AI +F M +G
Sbjct: 333 VDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNE 392
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ + VL ACS GG+V +G F ++M + P HY CM+ LL
Sbjct: 393 VTFLAVLNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLL 438
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVK-DSASWITLILGYGMLGELDVAINLF-EAMREDGVEY 63
L FY GRI A+++FD +P K D SW TL+ GY + + LF E R+D
Sbjct: 169 LHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLFGEMCRKD---- 224
Query: 64 YPVSHIGVLTAC----SLGGLVEKGKKFFDEMQARNV 96
+ V TA + G ++ G K F ++ ++V
Sbjct: 225 -----LNVATALIDMYANAGFIDLGHKIFYQVPKKDV 256
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y G IDL +KIF ++P KD W LI GY L +++L + M+ + V+
Sbjct: 232 IDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKPNS 291
Query: 66 VSHIGVLTA 74
+ +G+L+A
Sbjct: 292 STLVGLLSA 300
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G I+ A IFD++PV++ +W ++I G+ G + A+ +F M ++G++
Sbjct: 402 VDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDY 461
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
+S IG+L ACS GLV++G+++F M + +K HY+CMV LL
Sbjct: 462 ISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLL 507
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G + + +IFDR+P+K+S SW L+ GY G+ I +F M + V+ Y
Sbjct: 305 VDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEK--VDLYC 362
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
I L C+ V +GK+
Sbjct: 363 FGTI--LRTCAGLAAVRQGKE 381
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 20 KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79
K+FD L VKD SW ++I GY +G+ ++ LF M GVE + V+ ACS G
Sbjct: 116 KVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELG 175
Query: 80 LVEKGKKF 87
++ G+ F
Sbjct: 176 DLKLGRIF 183
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY 64
+D + R +D A ++FD L D+ W ++I D A+ F +M+ D G+
Sbjct: 203 IDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPD 262
Query: 65 PVSHIGVLTACSLGGLVEKGKK 86
+ VLTAC G +++GK+
Sbjct: 263 GFTFGTVLTACGNLGRLKQGKE 284
>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
Length = 825
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y+++G I A +F K+S ++ T+IL YG G + A++LF AM G++
Sbjct: 567 LDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDS 626
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ + +L+ACS GLV++G + F M+ ++P+ HY C+ +L
Sbjct: 627 VTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADML 672
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPV--KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63
+D Y ++G I A ++F++ +D A+W +I GY G + +F M E V
Sbjct: 464 IDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRP 523
Query: 64 YPVSHIGVLTACSLGGLVEKGKK 86
V+ +L AC+ G + GK+
Sbjct: 524 NAVTLASILPACNPMGTIGLGKQ 546
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 16 DLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTA 74
DL ++FD + ++ +W T+I Y L A +F M G+ PVS + V A
Sbjct: 169 DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LDFY + G + A IFD + K++ +W +I GYG G+ ++ LFE M + +
Sbjct: 499 LDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNE 558
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
+ VL+ACS G+V +GKK+F M + N P+ HY CMV +L +
Sbjct: 559 STFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLAR 606
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG 60
++ LD Y + G I A ++F+ D W +I+GY G ++ A++LF+ M G
Sbjct: 291 LVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVG 350
Query: 61 VEYYPVSHIGVLTACSLGGLVEKGKK 86
++ V+ VL+ C L G +E G+
Sbjct: 351 IKPNCVTIASVLSGCGLVGNLELGRS 376
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G I + K+F+ + +++ W ++I GY + + LF MRE+ V
Sbjct: 195 LDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNE 254
Query: 66 VSHIGVLTACSLGGLVEKGKKF 87
++ ++ AC+ + +GK F
Sbjct: 255 YTYGTLVMACTKLRALHQGKWF 276
>gi|293334473|ref|NP_001170726.1| uncharacterized protein LOC100384813 [Zea mays]
gi|238007188|gb|ACR34629.1| unknown [Zea mays]
Length = 329
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVS 67
Y++ G +D A +FD +P ++ SW +++ GYGM G A+++F+ M++ G +S
Sbjct: 1 MYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDIS 60
Query: 68 HIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIK 112
+ +L ACS G+V++G +FD M+ +V + HYAC++ LL +
Sbjct: 61 FLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLAR 106
>gi|225439791|ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like, partial [Vitis vinifera]
Length = 498
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
LD Y + G+I A +FDR+ KD SW ++I YG G A+ LF+ M +G P
Sbjct: 279 LDMYAKCGKILNARSLFDRMDKKDVVSWTSMIDAYGNHGHGLEALKLFKKMEGEGNSILP 338
Query: 66 --VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLLIKYNQ 115
V+ + VL+AC+ G+VE+G++ F+ +Q + ++ P HYAC + +L + Q
Sbjct: 339 NLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDPGPEHYACFIDILGRAGQ 391
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 46/81 (56%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G++ + ++F+ + KD +W T++ + G + A+ +F M+++GV
Sbjct: 82 MDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSSFVRHGRPEEALAVFREMQKEGVWLSE 141
Query: 66 VSHIGVLTACSLGGLVEKGKK 86
+ +L AC+L ++GK+
Sbjct: 142 FTLCSLLKACTLLKAFQQGKQ 162
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+ Y++ G ID A+++F+ + ++ SW ++I G+ G + F M E+GV+
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112
V+++ +L+ACS GLV +G + F+ M + +KP HYACMV LL +
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G +D A +F++LP KD W +I G M G+ ++NLF M V+
Sbjct: 348 VDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNG 407
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEMQAR-NVKPTETHYACMVYLL 110
V+ +GVL+AC+ GGLV++G + F M ++P HY CMV LL
Sbjct: 408 VTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLL 453
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y++ G D A K+F+ +P ++ SW LI GY A+ +F+ M +G+E
Sbjct: 247 VDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQ 306
Query: 66 VSHIGVLTACSLGGLVEKGK 85
+ LTAC+ G +++G+
Sbjct: 307 STVTSALTACAQLGSLDQGR 326
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
+ G +D + ++F KD SW LI G G A+ F MR GVE V+
Sbjct: 148 FAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTV 207
Query: 69 IGVLTACSL-----------GGLVEKGKKFFD 89
+ VL A ++ G VE G+ +D
Sbjct: 208 VSVLCAAAMLRDVWFGRWVHGFYVESGRVIWD 239
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D Y + G +D+A K+FD + +D+ W +I G M G+ D A+ LF M + GV+
Sbjct: 279 IDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDD 338
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
++ I + TACS G+ + + + M N++P HY C+V LL
Sbjct: 339 ITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLL 384
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68
Y + G ++ A +FD P+KD W ++I GY + +F M+ G+E
Sbjct: 181 YAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEPDEAIL 240
Query: 69 IGVLTACSLGGLVEKG---KKFFDEM 91
+ +L AC+ G +E G ++ D++
Sbjct: 241 VSILCACAHLGAMEIGVWVHRYLDQL 266
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFE--AMREDGVEY 63
+ Y+ G + A IFD +P + SW +I GY +G+++ A LF+ M++ G+
Sbjct: 147 IAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWG 206
Query: 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101
+S V C ++G + F MQ+ ++P E
Sbjct: 207 SIISGY-VQNNC-----FKEGLQMFRLMQSTGLEPDEA 238
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP 65
+D ++R G ID + +F+++ V++ +W LI G G+ G A+ +F +MR+ GV+
Sbjct: 228 IDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDY 287
Query: 66 VSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLL 110
V+ GVL ACS GGLV++G F+ + + + P HY CMV +L
Sbjct: 288 VTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDIL 333
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMR-EDGVEYYPVS 67
Y G +++A K+FD + +DS SW T+I + G A++LFE M+ ED V V+
Sbjct: 129 YGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVT 188
Query: 68 HIGVLTACSLGGLVEKGK 85
+ V++A S G +E G+
Sbjct: 189 MLSVISAISHLGDLELGR 206
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,903,648,512
Number of Sequences: 23463169
Number of extensions: 73611299
Number of successful extensions: 196043
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7184
Number of HSP's successfully gapped in prelim test: 1161
Number of HSP's that attempted gapping in prelim test: 155796
Number of HSP's gapped (non-prelim): 34565
length of query: 118
length of database: 8,064,228,071
effective HSP length: 85
effective length of query: 33
effective length of database: 6,069,858,706
effective search space: 200305337298
effective search space used: 200305337298
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)