BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046694
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|B Chain B, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|C Chain C, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|D Chain D, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|E Chain E, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|F Chain F, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16
Length = 506
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 38 LGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL-TACSLG 78
L YG G++DVAI + EDG + P + +G+L T C L
Sbjct: 112 LRYGFYGKVDVAIIEVADVTEDG-KILPTTGVGILPTICRLA 152
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 72 LTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
L CS G V + + +DE + V+ ++ HY ++Y+
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV 70
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 51 NLFEAMREDGVEYYPVSHIGV-LTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109
NL ++ ++ P + + L CS G V + + +DE + V+ ++ HY ++Y+
Sbjct: 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV 70
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWI 34
PR D+ T +D K++D +KD S+I
Sbjct: 213 PRCDWLMATSSVDATVKLWDLRNIKDKNSYI 243
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWI 34
PR D+ T +D K++D +KD S+I
Sbjct: 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINL 52
L++Y + + +L + F L +KD A + Y ++GEL A++L
Sbjct: 691 LEYYVKLAK-ELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL 736
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINL 52
L++Y + + +L + F L +KD A + Y ++GEL A++L
Sbjct: 714 LEYYVKLAK-ELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL 759
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINL 52
L++Y + + +L + F L +KD A + Y ++GEL A++L
Sbjct: 691 LEYYVKLAK-ELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL 736
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINL 52
L++Y + + +L + F L +KD A + Y ++GEL A++L
Sbjct: 691 LEYYVKLAK-ELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL 736
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINL 52
L++Y + + +L + F L +KD A + Y ++GEL A++L
Sbjct: 714 LEYYVKLAK-ELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL 759
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINL 52
L++Y + + +L + F L +KD A + Y ++GEL A++L
Sbjct: 714 LEYYVKLAK-ELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL 759
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINL 52
L++Y + + +L + F L +KD A + Y ++GEL A++L
Sbjct: 714 LEYYVKLAK-ELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL 759
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,634,353
Number of Sequences: 62578
Number of extensions: 139210
Number of successful extensions: 313
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 16
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)