Query 046694
Match_columns 118
No_of_seqs 136 out of 1268
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.2E-29 4.8E-34 182.8 12.4 118 1-118 362-480 (697)
2 PLN03081 pentatricopeptide (PP 100.0 1.8E-28 4E-33 178.1 12.5 117 1-117 261-377 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.1E-27 2.4E-32 177.1 12.8 117 1-118 526-643 (857)
4 PLN03077 Protein ECB2; Provisi 99.9 3.9E-27 8.3E-32 174.3 12.8 117 1-117 224-340 (857)
5 PLN03218 maturation of RBCL 1; 99.9 4.4E-27 9.6E-32 175.5 12.9 117 1-117 474-596 (1060)
6 PLN03218 maturation of RBCL 1; 99.9 5.6E-27 1.2E-31 174.9 12.6 117 1-117 439-559 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.8 6E-19 1.3E-23 88.2 6.6 50 28-77 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.8 1.2E-18 2.5E-23 87.2 5.9 50 63-112 1-50 (50)
9 KOG4422 Uncharacterized conser 99.5 4.7E-13 1E-17 91.6 8.1 111 1-115 209-327 (625)
10 PF12854 PPR_1: PPR repeat 99.3 1.5E-12 3.3E-17 59.6 3.7 34 59-92 1-34 (34)
11 PF12854 PPR_1: PPR repeat 99.2 2.1E-11 4.5E-16 55.8 3.6 31 27-57 4-34 (34)
12 TIGR00756 PPR pentatricopeptid 99.2 6.6E-11 1.4E-15 54.1 4.2 33 32-64 2-34 (35)
13 PRK11788 tetratricopeptide rep 99.1 1.7E-09 3.7E-14 74.1 11.5 74 33-110 252-325 (389)
14 PF13812 PPR_3: Pentatricopept 99.1 2.6E-10 5.7E-15 51.9 4.3 33 31-63 2-34 (34)
15 PRK11788 tetratricopeptide rep 99.1 4.5E-09 9.7E-14 72.1 11.8 111 4-115 112-229 (389)
16 PF06239 ECSIT: Evolutionarily 99.1 3.2E-09 6.9E-14 67.2 9.8 97 19-115 34-153 (228)
17 KOG4422 Uncharacterized conser 99.0 2.6E-09 5.7E-14 73.6 9.0 93 21-117 198-290 (625)
18 TIGR00756 PPR pentatricopeptid 99.0 5.3E-10 1.1E-14 51.0 3.6 35 66-100 1-35 (35)
19 PF08579 RPM2: Mitochondrial r 99.0 3.7E-08 8E-13 56.4 10.7 83 31-113 26-117 (120)
20 PF13812 PPR_3: Pentatricopept 99.0 1.3E-09 2.7E-14 49.6 3.8 33 66-98 2-34 (34)
21 PF01535 PPR: PPR repeat; Int 98.9 2.1E-09 4.6E-14 47.8 3.6 29 32-60 2-30 (31)
22 PF01535 PPR: PPR repeat; Int 98.8 7E-09 1.5E-13 46.0 3.2 31 66-96 1-31 (31)
23 TIGR02917 PEP_TPR_lipo putativ 98.8 1.5E-07 3.3E-12 69.7 11.9 112 3-117 774-888 (899)
24 TIGR02917 PEP_TPR_lipo putativ 98.8 1.8E-07 3.9E-12 69.3 12.3 55 3-57 605-662 (899)
25 PF10037 MRP-S27: Mitochondria 98.7 1.9E-07 4.1E-12 65.1 9.7 110 4-113 71-186 (429)
26 TIGR02521 type_IV_pilW type IV 98.6 4.6E-06 1E-10 52.6 12.5 17 75-91 145-161 (234)
27 TIGR02521 type_IV_pilW type IV 98.6 5.6E-06 1.2E-10 52.2 12.3 114 3-117 35-152 (234)
28 KOG3941 Intermediate in Toll s 98.5 2.8E-06 6.1E-11 56.3 9.6 98 18-115 53-173 (406)
29 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 8.7E-06 1.9E-10 56.6 12.0 111 4-117 174-285 (395)
30 PRK12370 invasion protein regu 98.4 1.3E-05 2.8E-10 58.0 12.4 112 4-117 343-458 (553)
31 PF13429 TPR_15: Tetratricopep 98.4 2E-06 4.4E-11 56.9 7.4 109 7-117 154-265 (280)
32 PF08579 RPM2: Mitochondrial r 98.4 3.3E-06 7.1E-11 48.5 7.0 73 5-77 31-116 (120)
33 TIGR02552 LcrH_SycD type III s 98.4 3.3E-05 7.1E-10 45.5 11.3 99 5-106 23-124 (135)
34 TIGR00990 3a0801s09 mitochondr 98.3 2.3E-05 5E-10 57.3 12.2 108 7-116 373-483 (615)
35 PRK15359 type III secretion sy 98.3 4.6E-05 1E-09 45.9 11.3 89 5-94 30-121 (144)
36 PF13429 TPR_15: Tetratricopep 98.3 4.5E-06 9.7E-11 55.3 7.1 107 6-115 117-229 (280)
37 PRK15174 Vi polysaccharide exp 98.3 4.7E-05 1E-09 56.3 12.9 43 72-115 219-261 (656)
38 PRK15174 Vi polysaccharide exp 98.3 4.3E-05 9.4E-10 56.5 12.2 112 4-117 115-229 (656)
39 cd00189 TPR Tetratricopeptide 98.2 2.4E-05 5.1E-10 42.0 8.4 91 2-93 3-96 (100)
40 TIGR00990 3a0801s09 mitochondr 98.2 6.5E-05 1.4E-09 55.0 12.8 114 2-117 334-450 (615)
41 KOG4318 Bicoid mRNA stability 98.2 1.7E-05 3.7E-10 59.3 8.9 85 28-115 202-286 (1088)
42 KOG4318 Bicoid mRNA stability 98.2 1.6E-06 3.4E-11 64.5 3.2 79 27-117 22-100 (1088)
43 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00016 3.5E-09 41.3 10.6 93 3-95 6-106 (119)
44 PF12921 ATP13: Mitochondrial 98.1 0.00014 3E-09 42.9 10.3 53 60-112 47-100 (126)
45 PF04733 Coatomer_E: Coatomer 98.1 0.0001 2.2E-09 49.4 10.5 111 4-116 136-251 (290)
46 PRK12370 invasion protein regu 98.0 0.00026 5.7E-09 51.4 12.3 111 2-115 375-490 (553)
47 PF12895 Apc3: Anaphase-promot 98.0 1.2E-05 2.7E-10 43.8 4.1 76 12-90 2-83 (84)
48 PLN03088 SGT1, suppressor of 98.0 0.00044 9.6E-09 47.7 12.2 98 7-107 10-110 (356)
49 PRK15359 type III secretion sy 98.0 0.00025 5.4E-09 42.7 9.6 96 20-117 14-109 (144)
50 PRK10747 putative protoheme IX 98.0 0.00037 8E-09 48.6 11.7 110 4-117 268-378 (398)
51 COG5010 TadD Flp pilus assembl 98.0 0.00076 1.7E-08 44.1 12.1 110 5-117 106-219 (257)
52 PF04840 Vps16_C: Vps16, C-ter 98.0 0.00014 3.1E-09 49.3 9.3 98 3-116 181-278 (319)
53 PRK09782 bacteriophage N4 rece 98.0 0.00048 1E-08 53.2 12.9 103 10-115 520-624 (987)
54 PRK10370 formate-dependent nit 97.9 0.0007 1.5E-08 43.0 11.6 106 2-110 76-187 (198)
55 PF03704 BTAD: Bacterial trans 97.9 0.00018 4E-09 43.1 8.5 73 32-105 64-141 (146)
56 PRK11189 lipoprotein NlpI; Pro 97.9 0.0007 1.5E-08 45.5 12.1 89 4-94 69-161 (296)
57 PRK11447 cellulose synthase su 97.9 0.0004 8.6E-09 54.5 12.2 111 4-116 608-727 (1157)
58 PRK10049 pgaA outer membrane p 97.9 0.00099 2.1E-08 50.3 13.9 110 3-115 53-165 (765)
59 PF05843 Suf: Suppressor of fo 97.9 0.00011 2.4E-09 49.0 8.1 115 1-117 3-124 (280)
60 PRK09782 bacteriophage N4 rece 97.9 0.00037 8.1E-09 53.8 11.7 102 13-117 590-694 (987)
61 PF10037 MRP-S27: Mitochondria 97.9 0.00014 3E-09 51.1 8.7 89 29-117 65-155 (429)
62 KOG1126 DNA-binding cell divis 97.9 4.6E-05 9.9E-10 55.2 6.3 112 1-117 423-540 (638)
63 CHL00033 ycf3 photosystem I as 97.9 0.00059 1.3E-08 41.9 10.6 114 2-116 38-167 (168)
64 PF06239 ECSIT: Evolutionarily 97.9 0.00018 4E-09 46.0 8.1 62 27-88 84-162 (228)
65 COG4783 Putative Zn-dependent 97.9 0.00055 1.2E-08 48.3 11.1 107 8-117 315-425 (484)
66 PF04733 Coatomer_E: Coatomer 97.9 0.00018 3.8E-09 48.3 8.4 106 8-118 111-219 (290)
67 PF09976 TPR_21: Tetratricopep 97.9 0.00039 8.3E-09 41.8 9.0 112 3-117 16-135 (145)
68 PRK15179 Vi polysaccharide bio 97.8 0.00075 1.6E-08 50.3 12.0 110 5-117 92-205 (694)
69 PF12921 ATP13: Mitochondrial 97.8 0.00059 1.3E-08 40.3 8.8 81 1-81 4-104 (126)
70 PRK10049 pgaA outer membrane p 97.8 0.0012 2.6E-08 49.8 12.4 110 5-117 21-133 (765)
71 PRK11447 cellulose synthase su 97.8 0.0016 3.4E-08 51.3 13.2 109 6-117 580-688 (1157)
72 cd00189 TPR Tetratricopeptide 97.7 0.00087 1.9E-08 35.6 8.4 84 32-117 2-85 (100)
73 TIGR02552 LcrH_SycD type III s 97.7 0.0011 2.4E-08 38.9 9.3 87 29-117 16-102 (135)
74 PRK10747 putative protoheme IX 97.7 0.002 4.2E-08 45.1 11.5 73 41-116 129-203 (398)
75 PRK14574 hmsH outer membrane p 97.7 0.0013 2.8E-08 50.0 11.1 88 5-93 74-164 (822)
76 PF14559 TPR_19: Tetratricopep 97.7 0.00015 3.3E-09 37.6 4.7 51 42-93 3-53 (68)
77 COG3063 PilF Tfp pilus assembl 97.7 0.0032 7E-08 40.8 11.2 111 5-117 41-156 (250)
78 PF03704 BTAD: Bacterial trans 97.7 0.00031 6.6E-09 42.1 6.4 66 4-69 67-140 (146)
79 KOG4626 O-linked N-acetylgluco 97.6 0.00015 3.3E-09 52.9 5.7 112 2-117 221-337 (966)
80 PF14559 TPR_19: Tetratricopep 97.6 0.0004 8.7E-09 36.0 6.0 61 10-72 2-65 (68)
81 TIGR00540 hemY_coli hemY prote 97.6 0.0017 3.7E-08 45.5 10.7 112 4-117 268-387 (409)
82 KOG1129 TPR repeat-containing 97.6 0.0036 7.9E-08 42.8 11.6 111 3-116 227-374 (478)
83 KOG1155 Anaphase-promoting com 97.6 0.0027 5.8E-08 45.0 11.2 111 2-115 367-481 (559)
84 PRK15363 pathogenicity island 97.6 0.0026 5.7E-08 38.9 9.8 87 7-94 43-132 (157)
85 PRK14574 hmsH outer membrane p 97.6 0.0039 8.5E-08 47.5 12.3 107 6-115 109-218 (822)
86 PRK02603 photosystem I assembl 97.5 0.0066 1.4E-07 37.4 12.1 107 3-115 39-166 (172)
87 PRK10370 formate-dependent nit 97.5 0.0051 1.1E-07 39.0 10.7 88 28-117 71-161 (198)
88 TIGR03302 OM_YfiO outer membra 97.5 0.003 6.4E-08 40.7 9.8 45 73-117 174-220 (235)
89 PF09976 TPR_21: Tetratricopep 97.5 0.0015 3.3E-08 39.2 8.0 84 5-90 54-143 (145)
90 KOG4626 O-linked N-acetylgluco 97.5 0.0022 4.8E-08 47.2 9.7 81 32-116 390-472 (966)
91 PF13432 TPR_16: Tetratricopep 97.5 0.0014 3E-08 33.7 6.7 55 38-93 5-59 (65)
92 KOG3081 Vesicle coat complex C 97.5 0.0041 8.9E-08 41.2 10.0 104 9-114 147-255 (299)
93 COG2956 Predicted N-acetylgluc 97.4 0.0016 3.5E-08 44.2 8.0 112 6-117 114-266 (389)
94 cd05804 StaR_like StaR_like; a 97.4 0.012 2.6E-07 40.1 12.5 88 6-93 121-214 (355)
95 TIGR00540 hemY_coli hemY prote 97.4 0.0031 6.8E-08 44.2 9.7 91 7-98 126-220 (409)
96 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0068 1.5E-07 34.4 9.9 86 32-117 4-93 (119)
97 PF13432 TPR_16: Tetratricopep 97.4 0.00092 2E-08 34.3 5.3 55 5-59 3-60 (65)
98 KOG1155 Anaphase-promoting com 97.3 0.0078 1.7E-07 42.8 10.7 114 3-117 402-524 (559)
99 PRK11189 lipoprotein NlpI; Pro 97.3 0.0064 1.4E-07 40.9 10.0 89 2-92 101-192 (296)
100 COG3071 HemY Uncharacterized e 97.3 0.011 2.3E-07 41.1 10.9 50 66-117 329-378 (400)
101 COG3063 PilF Tfp pilus assembl 97.3 0.018 4E-07 37.4 10.9 114 1-115 71-188 (250)
102 PF13414 TPR_11: TPR repeat; P 97.2 0.0048 1E-07 31.9 7.2 64 29-93 2-66 (69)
103 KOG2002 TPR-containing nuclear 97.2 0.00056 1.2E-08 51.8 4.5 103 13-116 626-732 (1018)
104 KOG1840 Kinesin light chain [C 97.2 0.0076 1.6E-07 43.5 9.9 116 3-118 329-468 (508)
105 CHL00033 ycf3 photosystem I as 97.2 0.016 3.6E-07 35.5 10.2 82 29-111 34-117 (168)
106 PF12895 Apc3: Anaphase-promot 97.2 0.00057 1.2E-08 37.1 3.3 73 43-117 2-75 (84)
107 PF13424 TPR_12: Tetratricopep 97.2 0.0024 5.2E-08 34.0 5.7 62 31-92 6-73 (78)
108 PF13424 TPR_12: Tetratricopep 97.2 0.00075 1.6E-08 36.0 3.6 56 2-57 8-73 (78)
109 KOG0553 TPR repeat-containing 97.1 0.0074 1.6E-07 40.5 8.6 96 9-108 91-190 (304)
110 KOG1126 DNA-binding cell divis 97.1 0.012 2.6E-07 43.2 10.0 111 4-116 494-607 (638)
111 PRK10803 tol-pal system protei 97.1 0.019 4E-07 38.2 10.3 91 4-94 148-246 (263)
112 TIGR03302 OM_YfiO outer membra 97.1 0.021 4.5E-07 36.7 10.2 92 4-95 38-145 (235)
113 COG5010 TadD Flp pilus assembl 97.1 0.028 6.1E-07 37.0 10.5 87 29-117 99-185 (257)
114 PRK15179 Vi polysaccharide bio 97.0 0.047 1E-06 41.1 12.9 89 4-93 125-216 (694)
115 KOG1840 Kinesin light chain [C 97.0 0.0076 1.7E-07 43.5 8.2 91 2-92 370-477 (508)
116 PRK02603 photosystem I assembl 97.0 0.034 7.4E-07 34.3 10.3 86 29-115 34-121 (172)
117 PF13414 TPR_11: TPR repeat; P 97.0 0.002 4.4E-08 33.4 4.1 57 2-58 6-66 (69)
118 PF12569 NARP1: NMDA receptor- 97.0 0.039 8.4E-07 40.2 11.6 94 4-98 199-295 (517)
119 COG3629 DnrI DNA-binding trans 96.9 0.03 6.5E-07 37.5 10.0 80 30-110 153-237 (280)
120 PF04840 Vps16_C: Vps16, C-ter 96.9 0.012 2.6E-07 40.1 8.2 77 2-90 211-287 (319)
121 KOG2002 TPR-containing nuclear 96.9 0.007 1.5E-07 46.2 7.2 103 5-107 652-758 (1018)
122 COG2956 Predicted N-acetylgluc 96.8 0.023 5.1E-07 38.8 9.0 85 11-95 192-279 (389)
123 PF13371 TPR_9: Tetratricopept 96.8 0.012 2.6E-07 30.7 6.3 54 39-93 4-57 (73)
124 KOG2003 TPR repeat-containing 96.8 0.054 1.2E-06 38.9 11.0 106 7-115 600-709 (840)
125 cd05804 StaR_like StaR_like; a 96.8 0.069 1.5E-06 36.4 11.4 105 12-117 93-203 (355)
126 COG3071 HemY Uncharacterized e 96.8 0.024 5.1E-07 39.4 8.8 69 29-99 327-395 (400)
127 PF13371 TPR_9: Tetratricopept 96.8 0.02 4.4E-07 29.8 6.9 55 6-60 2-59 (73)
128 KOG2076 RNA polymerase III tra 96.7 0.044 9.5E-07 41.8 10.4 112 4-117 419-543 (895)
129 COG3629 DnrI DNA-binding trans 96.7 0.019 4.2E-07 38.4 7.8 75 2-76 156-238 (280)
130 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.057 1.2E-06 38.5 10.4 64 29-94 74-141 (453)
131 COG4783 Putative Zn-dependent 96.7 0.05 1.1E-06 38.8 9.9 87 4-91 345-434 (484)
132 PF02284 COX5A: Cytochrome c o 96.6 0.039 8.4E-07 31.4 7.5 65 45-110 25-89 (108)
133 PF14938 SNAP: Soluble NSF att 96.6 0.083 1.8E-06 35.3 10.4 111 5-116 120-250 (282)
134 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.047 1E-06 38.8 9.4 58 2-59 78-141 (453)
135 PF09295 ChAPs: ChAPs (Chs5p-A 96.5 0.06 1.3E-06 37.9 9.6 86 4-91 205-294 (395)
136 KOG1173 Anaphase-promoting com 96.5 0.053 1.1E-06 39.5 9.2 99 12-113 427-535 (611)
137 KOG1914 mRNA cleavage and poly 96.5 0.17 3.7E-06 37.0 11.5 112 2-116 369-488 (656)
138 KOG1173 Anaphase-promoting com 96.4 0.018 3.9E-07 41.8 6.7 75 1-77 457-534 (611)
139 PLN03088 SGT1, suppressor of 96.4 0.066 1.4E-06 37.1 9.2 78 38-117 10-87 (356)
140 KOG1070 rRNA processing protei 96.4 0.082 1.8E-06 42.5 10.3 110 2-114 1533-1648(1710)
141 KOG2280 Vacuolar assembly/sort 96.2 0.026 5.7E-07 42.3 6.7 82 4-91 689-770 (829)
142 KOG1125 TPR repeat-containing 96.1 0.1 2.2E-06 38.0 9.2 111 3-116 434-558 (579)
143 PF13512 TPR_18: Tetratricopep 96.1 0.069 1.5E-06 32.2 7.2 68 9-76 20-93 (142)
144 KOG3785 Uncharacterized conser 96.1 0.062 1.3E-06 37.5 7.7 87 5-94 399-490 (557)
145 PF12569 NARP1: NMDA receptor- 96.1 0.28 6.2E-06 35.8 11.3 113 2-117 146-279 (517)
146 KOG2003 TPR repeat-containing 96.0 0.28 6E-06 35.5 10.7 85 29-116 591-676 (840)
147 PF05843 Suf: Suppressor of fo 96.0 0.082 1.8E-06 35.4 8.0 82 12-94 49-136 (280)
148 PRK15331 chaperone protein Sic 96.0 0.08 1.7E-06 32.7 7.2 85 9-94 47-134 (165)
149 PF13176 TPR_7: Tetratricopept 96.0 0.0073 1.6E-07 27.4 2.1 24 33-56 2-25 (36)
150 KOG3616 Selective LIM binding 96.0 0.032 6.9E-07 42.3 6.3 79 2-87 768-846 (1636)
151 PF13281 DUF4071: Domain of un 96.0 0.33 7.1E-06 34.0 11.4 108 5-114 147-273 (374)
152 cd00923 Cyt_c_Oxidase_Va Cytoc 95.9 0.13 2.9E-06 29.0 8.7 64 45-110 22-86 (103)
153 PF10602 RPN7: 26S proteasome 95.8 0.18 3.8E-06 31.6 8.4 90 2-91 39-139 (177)
154 PF13762 MNE1: Mitochondrial s 95.8 0.2 4.4E-06 30.3 9.4 79 33-111 42-126 (145)
155 KOG1915 Cell cycle control pro 95.8 0.11 2.3E-06 37.6 7.9 81 11-93 153-235 (677)
156 KOG0985 Vesicle coat protein c 95.7 0.23 4.9E-06 39.2 9.9 81 29-117 1103-1183(1666)
157 PF09205 DUF1955: Domain of un 95.7 0.22 4.7E-06 30.0 9.7 85 11-97 68-152 (161)
158 KOG0543 FKBP-type peptidyl-pro 95.7 0.31 6.8E-06 34.2 9.8 99 7-108 216-332 (397)
159 KOG3081 Vesicle coat complex C 95.7 0.36 7.9E-06 32.3 10.3 89 5-94 179-271 (299)
160 KOG1070 rRNA processing protei 95.7 0.31 6.8E-06 39.4 10.6 108 4-114 1463-1578(1710)
161 PF12688 TPR_5: Tetratrico pep 95.6 0.22 4.8E-06 29.1 8.9 100 7-112 9-118 (120)
162 PRK10153 DNA-binding transcrip 95.5 0.49 1.1E-05 34.6 10.7 65 29-95 419-483 (517)
163 PF12688 TPR_5: Tetratrico pep 95.5 0.24 5.2E-06 29.0 10.8 57 38-94 9-67 (120)
164 KOG4340 Uncharacterized conser 95.5 0.06 1.3E-06 36.7 5.5 84 12-97 125-210 (459)
165 PRK14720 transcript cleavage f 95.3 0.41 8.9E-06 37.3 10.0 109 2-113 34-163 (906)
166 PF13929 mRNA_stabil: mRNA sta 95.1 0.64 1.4E-05 31.4 9.4 87 27-113 199-291 (292)
167 PF13176 TPR_7: Tetratricopept 95.1 0.096 2.1E-06 23.6 4.1 24 68-91 2-25 (36)
168 KOG0547 Translocase of outer m 94.9 0.2 4.3E-06 36.3 7.0 82 11-93 406-490 (606)
169 PF10602 RPN7: 26S proteasome 94.9 0.53 1.1E-05 29.4 8.6 65 29-93 35-101 (177)
170 PRK10153 DNA-binding transcrip 94.8 1.1 2.4E-05 32.9 10.8 102 14-117 357-470 (517)
171 PF13170 DUF4003: Protein of u 94.8 0.21 4.5E-06 33.9 6.7 92 14-105 118-222 (297)
172 PRK10803 tol-pal system protei 94.7 0.77 1.7E-05 30.6 9.4 86 30-117 143-234 (263)
173 PF14938 SNAP: Soluble NSF att 94.7 0.71 1.5E-05 30.9 9.2 83 13-95 88-185 (282)
174 PLN02789 farnesyltranstransfer 94.7 0.9 1.9E-05 31.2 11.5 98 14-113 87-189 (320)
175 smart00299 CLH Clathrin heavy 94.7 0.48 1E-05 28.0 8.5 82 3-91 11-95 (140)
176 KOG3941 Intermediate in Toll s 94.7 0.15 3.3E-06 34.5 5.7 65 27-91 104-185 (406)
177 KOG2796 Uncharacterized conser 94.6 0.76 1.6E-05 31.0 8.7 106 2-107 139-254 (366)
178 KOG1128 Uncharacterized conser 94.4 0.3 6.6E-06 36.8 7.2 83 10-93 530-615 (777)
179 KOG1129 TPR repeat-containing 94.4 0.079 1.7E-06 36.6 3.9 80 13-93 304-386 (478)
180 KOG1125 TPR repeat-containing 94.3 0.3 6.5E-06 35.8 6.8 78 15-94 410-493 (579)
181 KOG4570 Uncharacterized conser 94.2 0.35 7.6E-06 33.3 6.6 81 12-94 77-164 (418)
182 TIGR02508 type_III_yscG type I 94.1 0.58 1.3E-05 26.7 7.3 49 9-59 49-97 (115)
183 PRK15363 pathogenicity island 94.1 0.81 1.8E-05 28.1 9.9 84 31-117 36-120 (157)
184 KOG0985 Vesicle coat protein c 94.0 0.89 1.9E-05 36.2 9.1 82 2-87 1107-1188(1666)
185 PLN02789 farnesyltranstransfer 94.0 1.3 2.8E-05 30.4 10.5 112 3-116 41-158 (320)
186 KOG2376 Signal recognition par 94.0 1.9 4.1E-05 32.1 11.1 108 5-113 382-505 (652)
187 KOG2053 Mitochondrial inherita 94.0 2.2 4.7E-05 33.2 10.9 72 11-84 55-129 (932)
188 PF13428 TPR_14: Tetratricopep 93.9 0.29 6.3E-06 22.9 4.5 26 33-58 4-29 (44)
189 KOG3616 Selective LIM binding 93.9 0.69 1.5E-05 35.6 8.2 95 10-115 743-839 (1636)
190 KOG3060 Uncharacterized conser 93.9 1.2 2.7E-05 29.7 9.1 28 64-91 153-180 (289)
191 PF00637 Clathrin: Region in C 93.7 0.0076 1.6E-07 35.9 -1.7 105 5-116 13-141 (143)
192 PF13428 TPR_14: Tetratricopep 93.7 0.28 6E-06 23.0 4.2 37 68-105 4-40 (44)
193 PF13374 TPR_10: Tetratricopep 93.7 0.3 6.6E-06 22.1 4.3 27 31-57 3-29 (42)
194 KOG0547 Translocase of outer m 93.7 1.1 2.4E-05 32.7 8.5 108 7-117 368-479 (606)
195 KOG2053 Mitochondrial inherita 93.6 0.82 1.8E-05 35.4 8.2 103 10-116 20-126 (932)
196 KOG1156 N-terminal acetyltrans 93.6 2.3 5.1E-05 32.0 10.8 92 4-96 376-470 (700)
197 KOG1128 Uncharacterized conser 93.5 0.41 8.9E-06 36.2 6.5 80 5-91 404-483 (777)
198 COG1729 Uncharacterized protei 93.5 1.5 3.2E-05 29.3 8.5 84 9-94 151-244 (262)
199 KOG0548 Molecular co-chaperone 93.4 1.9 4.1E-05 31.6 9.3 100 8-110 11-114 (539)
200 PF13512 TPR_18: Tetratricopep 93.2 1.1 2.4E-05 27.1 8.7 81 31-112 12-94 (142)
201 PF13525 YfiO: Outer membrane 93.1 1 2.2E-05 28.6 7.3 53 7-59 13-71 (203)
202 KOG1127 TPR repeat-containing 93.1 1.3 2.8E-05 35.1 8.6 112 2-116 495-612 (1238)
203 PRK14720 transcript cleavage f 93.1 1.1 2.3E-05 35.1 8.4 61 31-93 117-177 (906)
204 COG5107 RNA14 Pre-mRNA 3'-end 93.1 2.1 4.5E-05 31.2 9.1 111 2-116 400-518 (660)
205 PRK10866 outer membrane biogen 93.0 1.6 3.5E-05 28.7 8.2 50 10-59 43-98 (243)
206 KOG1914 mRNA cleavage and poly 93.0 1.3 2.9E-05 32.7 8.1 59 31-90 367-426 (656)
207 PRK04841 transcriptional regul 92.9 2.1 4.5E-05 33.2 9.8 90 4-93 496-601 (903)
208 PF04053 Coatomer_WDAD: Coatom 92.9 2.6 5.6E-05 30.4 9.7 75 10-95 329-403 (443)
209 PF13374 TPR_10: Tetratricopep 92.7 0.43 9.2E-06 21.5 4.0 29 65-93 2-30 (42)
210 PF13929 mRNA_stabil: mRNA sta 92.7 2.2 4.7E-05 29.0 9.7 104 13-116 142-254 (292)
211 KOG3060 Uncharacterized conser 92.7 2.1 4.5E-05 28.7 10.2 107 7-117 60-171 (289)
212 KOG2076 RNA polymerase III tra 92.6 4 8.7E-05 31.8 13.3 84 9-94 150-236 (895)
213 PF04184 ST7: ST7 protein; In 92.3 3.3 7.2E-05 30.3 9.3 70 38-107 267-338 (539)
214 KOG3785 Uncharacterized conser 92.0 1.1 2.3E-05 31.7 6.5 83 7-91 367-454 (557)
215 KOG4077 Cytochrome c oxidase, 92.0 1.6 3.5E-05 26.0 7.0 63 45-108 64-126 (149)
216 PRK10564 maltose regulon perip 92.0 0.57 1.2E-05 31.8 5.1 38 32-69 259-296 (303)
217 PF09613 HrpB1_HrpK: Bacterial 92.0 1.9 4.1E-05 26.7 10.3 86 10-100 21-112 (160)
218 KOG2376 Signal recognition par 92.0 1.3 2.9E-05 32.9 7.2 47 7-53 20-69 (652)
219 KOG0548 Molecular co-chaperone 91.6 4.2 9.2E-05 29.9 9.5 87 7-95 366-456 (539)
220 PF09205 DUF1955: Domain of un 91.4 1.7 3.7E-05 26.3 6.1 58 5-62 92-152 (161)
221 PF11848 DUF3368: Domain of un 91.4 0.93 2E-05 21.9 5.0 31 42-72 14-44 (48)
222 KOG4555 TPR repeat-containing 91.3 2.1 4.6E-05 25.9 9.7 87 8-95 52-145 (175)
223 COG4455 ImpE Protein of avirul 91.2 1.7 3.7E-05 28.5 6.5 73 2-74 4-81 (273)
224 PF14669 Asp_Glu_race_2: Putat 91.2 0.47 1E-05 30.3 3.9 67 34-103 136-216 (233)
225 KOG0495 HAT repeat protein [RN 91.1 5.6 0.00012 30.4 11.3 70 32-104 586-655 (913)
226 KOG4162 Predicted calmodulin-b 91.1 5.8 0.00013 30.6 10.7 111 4-117 655-771 (799)
227 smart00299 CLH Clathrin heavy 91.1 2 4.4E-05 25.3 7.5 58 30-89 7-64 (140)
228 PF11848 DUF3368: Domain of un 90.8 1.1 2.3E-05 21.7 4.7 35 75-109 12-46 (48)
229 PF13762 MNE1: Mitochondrial s 90.8 2.5 5.4E-05 25.7 9.1 82 3-84 43-134 (145)
230 KOG1174 Anaphase-promoting com 90.7 4.9 0.00011 29.0 9.3 112 4-117 237-385 (564)
231 PF10366 Vps39_1: Vacuolar sor 90.6 2.1 4.5E-05 24.6 6.5 55 3-58 3-67 (108)
232 KOG0543 FKBP-type peptidyl-pro 90.3 4.1 8.8E-05 28.9 8.0 90 2-93 260-354 (397)
233 PF13525 YfiO: Outer membrane 90.2 3.3 7.2E-05 26.3 8.8 58 38-95 13-72 (203)
234 PF10300 DUF3808: Protein of u 90.1 5.8 0.00012 28.8 9.6 81 10-91 278-373 (468)
235 PF07721 TPR_4: Tetratricopept 89.9 0.67 1.5E-05 19.1 2.7 19 5-23 7-25 (26)
236 PF11846 DUF3366: Domain of un 89.9 3.4 7.4E-05 25.9 7.3 58 37-94 115-173 (193)
237 PF00515 TPR_1: Tetratricopept 89.8 0.97 2.1E-05 19.5 4.3 27 32-58 3-29 (34)
238 PF00637 Clathrin: Region in C 89.7 0.054 1.2E-06 32.2 -1.1 56 35-90 12-67 (143)
239 COG2178 Predicted RNA-binding 89.7 3.8 8.3E-05 26.2 7.0 86 7-93 37-149 (204)
240 COG4700 Uncharacterized protei 89.6 4 8.7E-05 26.3 11.2 97 5-101 95-196 (251)
241 TIGR02561 HrpB1_HrpK type III 89.6 3.3 7.2E-05 25.3 9.4 61 11-76 22-87 (153)
242 TIGR03504 FimV_Cterm FimV C-te 89.4 1.4 3.1E-05 20.9 3.9 22 37-58 6-27 (44)
243 KOG2280 Vacuolar assembly/sort 89.4 2 4.4E-05 32.8 6.4 73 6-89 722-794 (829)
244 PRK11639 zinc uptake transcrip 89.2 3.8 8.2E-05 25.4 7.5 47 35-81 30-76 (169)
245 COG4105 ComL DNA uptake lipopr 89.2 4.9 0.00011 26.8 9.0 81 31-112 36-118 (254)
246 KOG0495 HAT repeat protein [RN 89.1 8.6 0.00019 29.5 10.6 111 5-115 412-531 (913)
247 PF12796 Ank_2: Ankyrin repeat 89.0 1.9 4.2E-05 23.0 4.9 82 7-99 2-86 (89)
248 PF02847 MA3: MA3 domain; Int 89.0 2.8 6.1E-05 23.7 8.2 62 3-64 6-71 (113)
249 PRK04841 transcriptional regul 88.9 9.5 0.00021 29.7 11.3 110 8-117 461-590 (903)
250 COG3947 Response regulator con 88.8 5.9 0.00013 27.3 8.2 73 32-105 281-358 (361)
251 PRK10866 outer membrane biogen 88.8 5 0.00011 26.4 11.5 60 36-96 38-100 (243)
252 PRK10564 maltose regulon perip 88.4 1.4 3.1E-05 30.0 4.7 49 60-108 251-300 (303)
253 PF04184 ST7: ST7 protein; In 88.3 5.5 0.00012 29.3 7.7 68 7-74 267-340 (539)
254 KOG4570 Uncharacterized conser 88.3 4.7 0.0001 28.0 7.1 87 29-117 63-152 (418)
255 COG4235 Cytochrome c biogenesi 88.3 6.1 0.00013 26.8 11.3 103 2-108 159-268 (287)
256 PF13170 DUF4003: Protein of u 88.0 4 8.6E-05 27.8 6.7 79 29-107 59-148 (297)
257 PF10300 DUF3808: Protein of u 87.9 4.3 9.3E-05 29.4 7.2 93 12-104 246-345 (468)
258 PF02847 MA3: MA3 domain; Int 87.8 3.4 7.5E-05 23.4 6.3 64 34-99 6-71 (113)
259 PF14689 SPOB_a: Sensor_kinase 87.8 1.1 2.3E-05 23.0 3.1 28 64-91 22-49 (62)
260 KOG2796 Uncharacterized conser 87.7 6.8 0.00015 26.7 7.4 100 5-107 218-326 (366)
261 COG4455 ImpE Protein of avirul 87.7 6.1 0.00013 26.1 7.8 78 32-111 3-83 (273)
262 KOG1915 Cell cycle control pro 87.6 9.5 0.00021 28.2 10.2 102 10-115 118-222 (677)
263 COG5107 RNA14 Pre-mRNA 3'-end 87.5 3.7 8.1E-05 30.0 6.5 77 1-79 44-123 (660)
264 PF02284 COX5A: Cytochrome c o 87.4 3.6 7.9E-05 23.5 5.2 46 27-73 42-87 (108)
265 COG4105 ComL DNA uptake lipopr 86.8 7.2 0.00016 26.0 8.9 82 10-91 45-139 (254)
266 cd07153 Fur_like Ferric uptake 86.5 3.1 6.7E-05 23.7 4.9 48 35-82 5-52 (116)
267 PF09454 Vps23_core: Vps23 cor 86.3 3 6.5E-05 21.7 4.3 49 28-77 6-54 (65)
268 smart00544 MA3 Domain in DAP-5 86.0 4.5 9.8E-05 22.9 10.6 59 3-61 6-68 (113)
269 COG0735 Fur Fe2+/Zn2+ uptake r 85.8 5.8 0.00013 24.0 6.9 65 51-116 7-71 (145)
270 PF13431 TPR_17: Tetratricopep 85.8 1.2 2.5E-05 19.7 2.3 23 28-50 11-33 (34)
271 COG0735 Fur Fe2+/Zn2+ uptake r 85.7 5.4 0.00012 24.1 5.8 66 17-82 7-72 (145)
272 COG1729 Uncharacterized protei 85.6 8.7 0.00019 25.8 9.2 85 32-117 144-232 (262)
273 PF09454 Vps23_core: Vps23 cor 85.6 3.6 7.8E-05 21.4 4.5 52 61-113 4-55 (65)
274 PF13174 TPR_6: Tetratricopept 85.5 1.4 3.1E-05 18.5 2.6 21 38-58 8-28 (33)
275 KOG0553 TPR repeat-containing 85.5 7.5 0.00016 26.6 6.8 69 6-76 122-193 (304)
276 PF04053 Coatomer_WDAD: Coatom 85.4 12 0.00026 27.1 9.7 79 2-91 350-428 (443)
277 PF14689 SPOB_a: Sensor_kinase 85.1 3.6 7.8E-05 21.0 5.0 45 14-58 5-51 (62)
278 TIGR03504 FimV_Cterm FimV C-te 85.1 2.9 6.3E-05 19.9 4.3 25 71-95 5-29 (44)
279 cd00923 Cyt_c_Oxidase_Va Cytoc 84.8 5.3 0.00012 22.7 5.2 46 27-73 39-84 (103)
280 KOG1174 Anaphase-promoting com 84.6 13 0.00028 27.0 8.9 48 9-56 344-394 (564)
281 cd07153 Fur_like Ferric uptake 84.5 3.3 7.1E-05 23.6 4.4 9 84-92 19-27 (116)
282 PF13181 TPR_8: Tetratricopept 84.5 2.3 4.9E-05 18.2 4.2 26 32-57 3-28 (34)
283 PF11846 DUF3366: Domain of un 84.5 6 0.00013 24.8 5.9 33 27-59 141-173 (193)
284 KOG2047 mRNA splicing factor [ 84.4 17 0.00036 28.0 10.2 45 66-112 249-293 (835)
285 PRK11639 zinc uptake transcrip 84.3 6.8 0.00015 24.3 5.9 62 54-116 15-76 (169)
286 PF11663 Toxin_YhaV: Toxin wit 84.1 1.6 3.4E-05 26.2 2.9 32 77-110 107-138 (140)
287 PF11207 DUF2989: Protein of u 83.7 9.3 0.0002 24.6 7.9 70 47-117 123-195 (203)
288 KOG4162 Predicted calmodulin-b 83.5 16 0.00035 28.3 8.3 84 9-93 694-782 (799)
289 PF01475 FUR: Ferric uptake re 83.3 3.7 7.9E-05 23.7 4.3 44 36-79 13-56 (120)
290 PF11817 Foie-gras_1: Foie gra 82.7 11 0.00024 24.8 8.8 52 36-87 184-240 (247)
291 COG3947 Response regulator con 82.6 9.2 0.0002 26.4 6.3 64 5-68 285-356 (361)
292 PF10579 Rapsyn_N: Rapsyn N-te 81.8 6.4 0.00014 21.4 5.0 46 42-87 18-65 (80)
293 PF07719 TPR_2: Tetratricopept 81.8 3.1 6.6E-05 17.6 4.3 24 34-57 5-28 (34)
294 KOG2114 Vacuolar assembly/sort 81.6 24 0.00052 27.8 9.1 104 6-117 341-448 (933)
295 KOG2047 mRNA splicing factor [ 81.6 22 0.00048 27.4 9.4 96 2-97 390-509 (835)
296 KOG2114 Vacuolar assembly/sort 81.5 23 0.0005 27.9 8.6 75 33-115 708-786 (933)
297 PRK09462 fur ferric uptake reg 81.5 9.3 0.0002 23.0 7.5 34 81-114 33-66 (148)
298 PF02607 B12-binding_2: B12 bi 81.4 2.1 4.5E-05 22.6 2.6 39 41-79 12-50 (79)
299 PF01475 FUR: Ferric uptake re 80.9 2.2 4.8E-05 24.6 2.8 47 70-116 12-58 (120)
300 PF09797 NatB_MDM20: N-acetylt 80.9 13 0.00027 26.0 6.8 68 4-71 185-258 (365)
301 PF07575 Nucleopor_Nup85: Nup8 80.1 8.4 0.00018 28.7 6.0 81 15-97 390-470 (566)
302 KOG4567 GTPase-activating prot 80.0 16 0.00034 25.4 6.7 58 50-112 263-320 (370)
303 COG3898 Uncharacterized membra 80.0 20 0.00043 25.9 8.7 97 2-100 191-298 (531)
304 PF14840 DNA_pol3_delt_C: Proc 80.0 3.1 6.8E-05 24.5 3.2 29 42-70 9-37 (125)
305 KOG2063 Vacuolar assembly/sort 79.9 29 0.00062 27.6 8.9 112 2-113 507-639 (877)
306 COG2987 HutU Urocanate hydrata 79.7 3.2 6.9E-05 30.0 3.5 46 44-102 217-262 (561)
307 COG3898 Uncharacterized membra 79.6 21 0.00045 25.8 8.0 78 12-91 133-214 (531)
308 PRK15180 Vi polysaccharide bio 79.5 3.6 7.8E-05 30.3 3.8 83 10-93 334-419 (831)
309 KOG4340 Uncharacterized conser 79.5 18 0.0004 25.2 7.9 90 2-93 13-106 (459)
310 COG5210 GTPase-activating prot 79.4 11 0.00024 27.6 6.4 63 47-109 359-421 (496)
311 PF08311 Mad3_BUB1_I: Mad3/BUB 79.0 11 0.00023 22.2 9.0 59 30-90 65-124 (126)
312 TIGR02508 type_III_yscG type I 78.1 11 0.00023 21.7 4.7 75 15-95 21-98 (115)
313 PF07079 DUF1347: Protein of u 78.0 25 0.00054 25.9 8.9 82 32-113 79-180 (549)
314 KOG3617 WD40 and TPR repeat-co 77.1 35 0.00075 27.4 8.4 57 2-58 760-828 (1416)
315 PF11663 Toxin_YhaV: Toxin wit 77.1 1.7 3.7E-05 26.1 1.4 33 41-75 106-138 (140)
316 PRK15331 chaperone protein Sic 76.5 16 0.00034 22.8 6.5 56 39-95 46-101 (165)
317 TIGR03581 EF_0839 conserved hy 75.6 20 0.00043 23.5 6.5 79 14-92 136-235 (236)
318 KOG0686 COP9 signalosome, subu 75.6 28 0.0006 25.2 7.6 56 4-59 155-216 (466)
319 COG3118 Thioredoxin domain-con 75.4 24 0.00051 24.3 10.8 106 5-114 174-286 (304)
320 PF11817 Foie-gras_1: Foie gra 75.1 11 0.00023 24.9 4.9 53 5-57 184-245 (247)
321 KOG2908 26S proteasome regulat 75.0 26 0.00057 24.7 7.7 59 7-65 83-155 (380)
322 PF11768 DUF3312: Protein of u 74.2 33 0.00071 25.7 7.4 90 4-93 413-522 (545)
323 smart00028 TPR Tetratricopepti 74.1 4.8 0.0001 15.7 3.1 25 33-57 4-28 (34)
324 smart00164 TBC Domain in Tre-2 73.0 18 0.0004 22.5 5.5 27 86-112 152-179 (199)
325 KOG4648 Uncharacterized conser 73.0 25 0.00053 25.1 6.3 50 7-56 105-157 (536)
326 TIGR01914 cas_Csa4 CRISPR-asso 72.8 30 0.00064 24.3 6.7 66 41-111 287-352 (354)
327 PF09613 HrpB1_HrpK: Bacterial 72.6 20 0.00044 22.2 8.7 69 38-110 18-87 (160)
328 PF13281 DUF4071: Domain of un 72.4 32 0.00069 24.5 10.4 78 34-111 145-228 (374)
329 cd08789 CARD_IPS-1_RIG-I Caspa 72.0 13 0.00028 20.3 4.0 49 32-85 34-82 (84)
330 PF09477 Type_III_YscG: Bacter 71.8 17 0.00037 21.1 7.2 76 14-95 21-99 (116)
331 PF02259 FAT: FAT domain; Int 71.7 28 0.00061 23.6 7.2 65 29-93 145-212 (352)
332 KOG2041 WD40 repeat protein [G 71.0 10 0.00022 29.4 4.4 39 12-55 747-785 (1189)
333 TIGR01228 hutU urocanate hydra 70.8 7.6 0.00017 28.5 3.6 46 44-102 208-253 (545)
334 cd00280 TRFH Telomeric Repeat 70.8 25 0.00054 22.5 7.7 48 46-93 85-139 (200)
335 PF03745 DUF309: Domain of unk 70.6 13 0.00027 19.0 5.3 47 42-88 11-62 (62)
336 PF10475 DUF2450: Protein of u 70.6 30 0.00066 23.4 6.8 23 35-57 132-154 (291)
337 cd08819 CARD_MDA5_2 Caspase ac 70.4 11 0.00023 20.9 3.4 64 18-86 21-87 (88)
338 PRK05414 urocanate hydratase; 70.1 8.3 0.00018 28.5 3.7 46 44-102 217-262 (556)
339 COG5108 RPO41 Mitochondrial DN 70.0 51 0.0011 25.8 8.1 71 4-77 33-115 (1117)
340 KOG1127 TPR repeat-containing 69.2 22 0.00048 28.8 5.9 60 29-91 595-656 (1238)
341 PF07035 Mic1: Colon cancer-as 69.0 25 0.00055 21.9 6.4 77 15-95 74-150 (167)
342 PF14669 Asp_Glu_race_2: Putat 68.1 12 0.00027 24.2 3.8 52 4-55 137-206 (233)
343 cd08819 CARD_MDA5_2 Caspase ac 68.1 19 0.0004 20.0 5.0 62 48-115 20-81 (88)
344 KOG1920 IkappaB kinase complex 68.0 52 0.0011 27.2 7.7 50 8-57 974-1026(1265)
345 PF13934 ELYS: Nuclear pore co 67.6 32 0.00068 22.5 7.9 99 5-111 82-183 (226)
346 KOG2908 26S proteasome regulat 66.5 43 0.00094 23.6 8.4 76 32-107 77-163 (380)
347 PF02607 B12-binding_2: B12 bi 66.4 17 0.00037 19.0 4.4 40 76-115 12-51 (79)
348 PF11207 DUF2989: Protein of u 66.1 33 0.00072 22.2 8.6 70 16-85 123-198 (203)
349 PRK09857 putative transposase; 65.9 40 0.00086 23.0 7.7 66 33-99 209-274 (292)
350 smart00544 MA3 Domain in DAP-5 65.9 22 0.00048 20.0 9.2 62 33-96 5-68 (113)
351 PF00566 RabGAP-TBC: Rab-GTPas 65.8 26 0.00056 21.9 5.1 45 51-96 150-194 (214)
352 KOG3617 WD40 and TPR repeat-co 65.5 42 0.00092 26.9 6.7 73 10-90 811-883 (1416)
353 COG1747 Uncharacterized N-term 65.2 57 0.0012 24.6 7.5 87 5-94 72-160 (711)
354 COG2405 Predicted nucleic acid 65.0 21 0.00045 21.8 4.1 42 68-110 113-154 (157)
355 PF04124 Dor1: Dor1-like famil 64.8 44 0.00096 23.2 8.4 37 33-69 109-146 (338)
356 cd08332 CARD_CASP2 Caspase act 64.2 18 0.00038 20.0 3.6 57 21-81 25-81 (90)
357 PF02184 HAT: HAT (Half-A-TPR) 63.8 12 0.00027 16.5 2.4 25 80-106 2-26 (32)
358 KOG1538 Uncharacterized conser 63.7 18 0.0004 27.9 4.5 57 4-60 778-847 (1081)
359 PF10366 Vps39_1: Vacuolar sor 63.7 26 0.00056 20.1 7.2 27 67-93 41-67 (108)
360 PF07304 SRA1: Steroid recepto 63.6 22 0.00048 21.9 4.3 43 52-94 77-119 (157)
361 COG5108 RPO41 Mitochondrial DN 63.2 72 0.0016 25.0 8.1 72 35-109 33-112 (1117)
362 COG2405 Predicted nucleic acid 63.1 23 0.00051 21.6 4.1 44 31-75 111-154 (157)
363 KOG0991 Replication factor C, 62.8 45 0.00098 22.6 6.1 66 9-76 202-283 (333)
364 PF01175 Urocanase: Urocanase; 62.2 8.3 0.00018 28.4 2.5 45 45-102 208-252 (546)
365 PF08542 Rep_fac_C: Replicatio 61.9 23 0.00051 19.0 4.2 45 32-78 7-51 (89)
366 smart00638 LPD_N Lipoprotein N 61.8 64 0.0014 24.0 12.1 94 11-105 321-416 (574)
367 PRK14956 DNA polymerase III su 61.4 64 0.0014 23.9 7.5 60 43-102 213-285 (484)
368 PF04034 DUF367: Domain of unk 61.3 33 0.00071 20.5 6.0 59 30-91 66-125 (127)
369 KOG0991 Replication factor C, 61.3 38 0.00081 22.9 5.1 59 42-101 204-274 (333)
370 KOG0276 Vesicle coat complex C 61.3 74 0.0016 24.5 7.7 47 42-94 649-695 (794)
371 smart00386 HAT HAT (Half-A-TPR 61.2 12 0.00025 15.3 3.8 27 80-107 2-28 (33)
372 PF11123 DNA_Packaging_2: DNA 60.9 25 0.00053 18.9 4.1 31 13-43 11-44 (82)
373 KOG4555 TPR repeat-containing 60.9 36 0.00078 20.8 7.6 55 38-93 51-105 (175)
374 KOG1586 Protein required for f 60.0 42 0.00091 22.6 5.2 26 76-101 165-190 (288)
375 smart00804 TAP_C C-terminal do 59.1 21 0.00045 18.4 3.1 24 42-65 37-61 (63)
376 PF14853 Fis1_TPR_C: Fis1 C-te 58.5 22 0.00047 17.6 4.2 29 38-68 9-37 (53)
377 cd08326 CARD_CASP9 Caspase act 58.5 29 0.00062 18.9 4.4 61 20-84 20-80 (84)
378 cd00280 TRFH Telomeric Repeat 58.3 43 0.00092 21.5 4.8 63 15-80 85-158 (200)
379 KOG3807 Predicted membrane pro 58.3 39 0.00086 24.0 5.1 53 42-96 287-342 (556)
380 cd08812 CARD_RIG-I_like Caspas 58.0 20 0.00044 19.7 3.1 45 36-84 40-85 (88)
381 PF08564 CDC37_C: Cdc37 C term 57.9 11 0.00024 21.4 2.1 10 17-26 16-25 (99)
382 TIGR01529 argR_whole arginine 57.7 24 0.00051 21.4 3.6 42 35-76 5-46 (146)
383 PRK09462 fur ferric uptake reg 57.1 40 0.00088 20.2 5.8 50 33-82 19-69 (148)
384 PF07163 Pex26: Pex26 protein; 57.0 62 0.0013 22.3 8.7 83 6-88 90-181 (309)
385 PF07720 TPR_3: Tetratricopept 54.8 20 0.00044 16.1 2.7 14 8-21 10-23 (36)
386 PF09670 Cas_Cas02710: CRISPR- 54.6 75 0.0016 22.6 7.3 55 39-94 140-198 (379)
387 PF08631 SPO22: Meiosis protei 53.8 65 0.0014 21.6 11.0 78 31-110 85-165 (278)
388 COG4700 Uncharacterized protei 53.4 61 0.0013 21.1 8.7 88 28-115 87-175 (251)
389 PF12816 Vps8: Golgi CORVET co 52.9 52 0.0011 21.0 4.8 59 25-88 17-75 (196)
390 PRK02287 hypothetical protein; 52.6 57 0.0012 20.5 6.2 61 29-92 106-167 (171)
391 PF07443 HARP: HepA-related pr 52.6 4.4 9.6E-05 20.3 -0.1 31 46-76 8-38 (55)
392 PF14840 DNA_pol3_delt_C: Proc 52.5 20 0.00044 21.1 2.7 27 78-104 10-36 (125)
393 KOG0276 Vesicle coat complex C 52.1 1.1E+02 0.0024 23.7 7.6 80 9-90 647-746 (794)
394 TIGR01529 argR_whole arginine 52.0 50 0.0011 20.0 4.4 38 71-108 6-43 (146)
395 KOG3154 Uncharacterized conser 51.8 61 0.0013 21.4 4.8 53 5-57 153-207 (263)
396 PF10475 DUF2450: Protein of u 51.4 68 0.0015 21.7 5.4 78 5-85 133-217 (291)
397 TIGR02561 HrpB1_HrpK type III 51.2 57 0.0012 20.1 7.7 51 42-96 22-75 (153)
398 KOG2223 Uncharacterized conser 50.9 41 0.00089 24.7 4.3 40 52-91 461-500 (586)
399 PRK14962 DNA polymerase III su 50.9 98 0.0021 22.8 8.4 58 42-99 255-318 (472)
400 PF09868 DUF2095: Uncharacteri 50.4 51 0.0011 19.4 5.4 26 35-60 66-91 (128)
401 KOG1586 Protein required for f 50.1 78 0.0017 21.4 6.8 104 10-114 25-141 (288)
402 PF10255 Paf67: RNA polymerase 49.9 62 0.0013 23.4 5.1 54 4-57 127-191 (404)
403 KOG0624 dsRNA-activated protei 49.3 97 0.0021 22.3 10.6 107 8-116 115-239 (504)
404 PF12862 Apc5: Anaphase-promot 49.1 44 0.00096 18.3 6.5 21 71-91 47-67 (94)
405 PF07079 DUF1347: Protein of u 49.0 66 0.0014 23.8 5.1 69 9-77 89-179 (549)
406 PRK11906 transcriptional regul 48.6 1.1E+02 0.0023 22.6 8.4 78 10-90 349-432 (458)
407 PF06552 TOM20_plant: Plant sp 48.4 71 0.0015 20.4 7.8 15 96-110 109-123 (186)
408 KOG0403 Neoplastic transformat 48.1 1.1E+02 0.0025 22.7 10.3 70 4-77 514-586 (645)
409 PF14162 YozD: YozD-like prote 48.0 35 0.00077 16.8 3.9 19 83-101 13-31 (57)
410 PF11838 ERAP1_C: ERAP1-like C 47.6 85 0.0018 21.1 8.6 82 11-95 142-231 (324)
411 COG4003 Uncharacterized protei 47.0 49 0.0011 18.2 3.5 32 29-60 29-61 (98)
412 KOG0550 Molecular chaperone (D 46.4 1.2E+02 0.0025 22.3 8.3 104 9-114 259-371 (486)
413 PF12926 MOZART2: Mitotic-spin 45.7 53 0.0011 18.2 7.8 41 51-91 29-69 (88)
414 PF08967 DUF1884: Domain of un 45.7 30 0.00066 18.9 2.4 25 46-70 11-35 (85)
415 COG3294 HD supefamily hydrolas 45.2 19 0.00041 23.9 1.9 22 46-67 66-87 (269)
416 PRK14951 DNA polymerase III su 44.9 1.4E+02 0.0031 22.9 7.2 57 42-99 215-284 (618)
417 KOG0508 Ankyrin repeat protein 44.5 1.1E+02 0.0024 22.9 5.7 24 40-63 347-373 (615)
418 PRK06645 DNA polymerase III su 43.8 1.4E+02 0.0029 22.4 6.8 58 42-100 219-292 (507)
419 COG3118 Thioredoxin domain-con 43.6 1.1E+02 0.0024 21.2 8.2 51 9-59 144-197 (304)
420 PF11740 KfrA_N: Plasmid repli 43.6 62 0.0014 18.4 5.8 41 47-91 4-44 (120)
421 PF09312 SurA_N: SurA N-termin 43.4 65 0.0014 18.5 4.0 46 53-99 57-102 (118)
422 PF06552 TOM20_plant: Plant sp 43.3 87 0.0019 20.0 7.9 43 46-96 96-138 (186)
423 TIGR02710 CRISPR-associated pr 43.0 1.2E+02 0.0027 21.7 6.7 54 37-90 137-196 (380)
424 PF04190 DUF410: Protein of un 43.0 1E+02 0.0022 20.6 7.2 30 64-94 141-170 (260)
425 PRK14963 DNA polymerase III su 42.6 1.4E+02 0.0031 22.2 7.1 56 43-99 208-275 (504)
426 PRK14958 DNA polymerase III su 42.4 1.4E+02 0.0031 22.2 8.0 57 43-100 211-280 (509)
427 cd08329 CARD_BIRC2_BIRC3 Caspa 42.2 56 0.0012 18.2 3.3 65 19-88 26-90 (94)
428 PRK05094 dsDNA-mimic protein; 42.0 69 0.0015 18.5 3.9 43 46-88 13-56 (107)
429 KOG1941 Acetylcholine receptor 41.8 1.3E+02 0.0029 21.8 6.0 90 2-91 165-272 (518)
430 KOG4648 Uncharacterized conser 41.6 33 0.00072 24.5 2.7 46 38-85 105-151 (536)
431 PF11084 DUF2621: Protein of u 41.5 79 0.0017 19.0 4.4 76 16-100 61-136 (141)
432 PF09477 Type_III_YscG: Bacter 41.5 73 0.0016 18.6 6.8 58 45-107 21-78 (116)
433 TIGR01914 cas_Csa4 CRISPR-asso 41.3 1.3E+02 0.0027 21.3 7.4 67 9-76 286-352 (354)
434 cd08315 Death_TRAILR_DR4_DR5 D 41.0 66 0.0014 18.0 3.6 31 30-60 64-94 (96)
435 PF12169 DNA_pol3_gamma3: DNA 40.8 58 0.0013 19.1 3.5 24 42-65 26-49 (143)
436 TIGR03362 VI_chp_7 type VI sec 40.7 1.2E+02 0.0026 20.9 5.5 58 37-94 220-279 (301)
437 PF11491 DUF3213: Protein of u 40.7 4.6 0.0001 22.0 -1.1 21 60-80 19-39 (88)
438 PF07240 Turandot: Stress-indu 40.7 65 0.0014 17.8 4.5 72 8-90 5-82 (85)
439 PF08780 NTase_sub_bind: Nucle 40.3 77 0.0017 18.6 4.9 65 29-96 25-90 (124)
440 TIGR03236 dnd_assoc_1 dnd syst 40.3 1.4E+02 0.0029 21.4 5.7 36 83-118 314-349 (363)
441 TIGR03362 VI_chp_7 type VI sec 40.2 1.1E+02 0.0023 21.1 5.0 53 7-59 221-279 (301)
442 PF04090 RNA_pol_I_TF: RNA pol 40.2 1E+02 0.0022 19.9 6.7 62 29-91 40-102 (199)
443 TIGR02531 yecD_yerC TrpR-relat 39.9 41 0.00088 18.6 2.5 27 2-28 5-31 (88)
444 COG3682 Predicted transcriptio 39.8 82 0.0018 18.7 4.5 35 46-81 20-54 (123)
445 PF07163 Pex26: Pex26 protein; 39.5 1.3E+02 0.0028 20.9 8.3 78 32-111 85-164 (309)
446 PF13934 ELYS: Nuclear pore co 39.5 1.1E+02 0.0024 20.0 9.5 89 4-99 113-203 (226)
447 PF02840 Prp18: Prp18 domain; 39.2 91 0.002 19.0 4.2 43 49-91 43-85 (144)
448 PRK06904 replicative DNA helic 38.6 1.6E+02 0.0035 21.7 6.6 27 47-73 62-88 (472)
449 KOG2058 Ypt/Rab GTPase activat 38.2 1E+02 0.0022 22.5 4.8 44 54-97 306-349 (436)
450 KOG1130 Predicted G-alpha GTPa 38.0 49 0.0011 24.3 3.2 17 9-25 27-43 (639)
451 PF04494 TFIID_90kDa: WD40 ass 38.0 90 0.002 18.7 6.6 68 12-79 55-126 (142)
452 PF09119 SicP-binding: SicP bi 37.9 71 0.0015 17.4 5.2 44 15-58 22-65 (81)
453 cd06182 CYPOR_like NADPH cytoc 37.9 79 0.0017 21.1 4.1 42 75-116 220-262 (267)
454 KOG2471 TPR repeat-containing 37.7 1.8E+02 0.0039 22.1 6.4 103 8-112 249-381 (696)
455 KOG4077 Cytochrome c oxidase, 37.5 95 0.0021 18.8 5.5 33 27-59 81-113 (149)
456 PRK15180 Vi polysaccharide bio 37.5 1.8E+02 0.004 22.0 7.4 83 12-97 302-389 (831)
457 KOG0403 Neoplastic transformat 37.4 1.8E+02 0.0038 21.8 8.3 60 33-95 512-573 (645)
458 PF12554 MOZART1: Mitotic-spin 37.3 54 0.0012 15.9 3.0 24 41-64 15-38 (48)
459 PRK08691 DNA polymerase III su 37.1 2.1E+02 0.0045 22.6 7.7 56 43-99 211-279 (709)
460 cd08320 Pyrin_NALPs Pyrin deat 37.0 31 0.00067 18.9 1.7 26 32-57 47-72 (86)
461 COG3825 Uncharacterized protei 36.8 1.5E+02 0.0033 20.9 5.8 55 51-106 4-58 (393)
462 cd04445 DEP_PLEK1 DEP (Disheve 36.8 82 0.0018 17.9 3.9 55 42-96 8-65 (99)
463 PRK14958 DNA polymerase III su 36.6 1.8E+02 0.0039 21.7 6.4 52 12-64 211-279 (509)
464 cd01041 Rubrerythrin Rubreryth 36.6 90 0.002 18.3 4.6 37 47-83 72-108 (134)
465 PF08631 SPO22: Meiosis protei 36.5 1.3E+02 0.0029 20.1 10.5 96 4-101 89-193 (278)
466 PF03965 Penicillinase_R: Peni 36.5 84 0.0018 17.9 3.7 15 100-114 35-49 (115)
467 PF05944 Phage_term_smal: Phag 36.4 97 0.0021 18.6 5.7 27 70-96 53-79 (132)
468 PF08625 Utp13: Utp13 specific 36.4 99 0.0022 18.7 8.9 23 6-28 4-26 (141)
469 PF14044 NETI: NETI protein 36.4 37 0.00079 17.2 1.7 18 47-64 8-25 (57)
470 PRK08006 replicative DNA helic 36.3 1.8E+02 0.0038 21.5 6.6 22 51-72 70-91 (471)
471 KOG2297 Predicted translation 36.0 1.1E+02 0.0024 21.6 4.4 63 29-91 320-397 (412)
472 KOG0624 dsRNA-activated protei 35.9 1.7E+02 0.0036 21.2 9.6 87 6-93 162-251 (504)
473 PF01347 Vitellogenin_N: Lipop 35.4 1.9E+02 0.0042 21.7 9.9 53 11-63 357-411 (618)
474 PF08461 HTH_12: Ribonuclease 35.3 68 0.0015 16.5 4.5 42 38-79 5-46 (66)
475 smart00668 CTLH C-terminal to 35.3 57 0.0012 15.6 2.7 23 36-58 7-29 (58)
476 PRK14713 multifunctional hydro 35.3 1.9E+02 0.0041 21.6 7.5 91 27-117 417-518 (530)
477 PF05261 Tra_M: TraM protein, 35.2 1E+02 0.0022 18.4 3.7 39 41-79 8-46 (127)
478 cd02679 MIT_spastin MIT: domai 35.1 75 0.0016 17.2 3.0 44 43-93 21-67 (79)
479 PRK08840 replicative DNA helic 34.9 1.8E+02 0.004 21.4 6.5 26 48-73 60-85 (464)
480 cd08323 CARD_APAF1 Caspase act 34.8 82 0.0018 17.3 3.9 63 19-85 17-79 (86)
481 KOG2659 LisH motif-containing 34.7 1.4E+02 0.003 19.8 6.9 22 36-57 70-91 (228)
482 PRK10292 hypothetical protein; 34.6 73 0.0016 16.6 5.3 37 55-91 24-60 (69)
483 PF04269 DUF440: Protein of un 34.6 55 0.0012 18.7 2.5 26 46-71 10-36 (103)
484 KOG1538 Uncharacterized conser 34.5 2.2E+02 0.0047 22.6 6.0 25 67-91 806-830 (1081)
485 cd08330 CARD_ASC_NALP1 Caspase 34.5 80 0.0017 17.0 5.4 56 46-105 14-69 (82)
486 PRK14700 recombination factor 34.4 1.6E+02 0.0034 20.4 7.9 65 32-96 125-197 (300)
487 COG2812 DnaX DNA polymerase II 34.3 2E+02 0.0044 21.6 6.6 64 39-103 207-283 (515)
488 PF07035 Mic1: Colon cancer-as 34.3 1.2E+02 0.0026 19.0 11.8 82 2-91 32-115 (167)
489 TIGR02328 conserved hypothetic 34.2 44 0.00096 19.5 2.1 17 85-101 55-71 (120)
490 COG2976 Uncharacterized protei 33.7 1.4E+02 0.003 19.5 9.0 88 6-95 96-189 (207)
491 cd08817 CARD_RIG-I_2 Caspase a 33.4 88 0.0019 17.3 3.0 26 33-58 37-62 (88)
492 PF00356 LacI: Bacterial regul 33.4 61 0.0013 15.4 2.7 35 64-99 12-46 (46)
493 KOG1156 N-terminal acetyltrans 32.6 2.4E+02 0.0052 22.0 10.4 99 9-109 85-188 (700)
494 COG2042 Uncharacterized conser 32.5 1.3E+02 0.0029 19.0 5.9 63 29-94 114-177 (179)
495 KOG0687 26S proteasome regulat 32.2 1.9E+02 0.0041 20.6 5.4 43 32-74 106-152 (393)
496 PF00591 Glycos_transf_3: Glyc 31.8 1.5E+02 0.0033 19.5 4.8 53 43-95 192-249 (252)
497 KOG0550 Molecular chaperone (D 31.6 2.1E+02 0.0046 21.1 7.7 85 9-93 213-315 (486)
498 PF04910 Tcf25: Transcriptiona 31.5 1.9E+02 0.0041 20.5 7.0 65 29-93 99-167 (360)
499 TIGR01219 Pmev_kin_ERG8 phosph 31.5 1.7E+02 0.0037 21.6 5.1 70 44-113 297-394 (454)
500 PF07875 Coat_F: Coat F domain 31.4 66 0.0014 16.2 2.3 18 81-98 44-61 (64)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=182.82 Aligned_cols=118 Identities=37% Similarity=0.664 Sum_probs=114.3
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
+||+||.+|+++|++++|.++|++|..||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.|.
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHh-hcCCCccHHHHHHHHHHHHHcccccC
Q 046694 81 VEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQKAR 118 (118)
Q Consensus 81 ~~~a~~~~~~m~-~~g~~~~~~t~~~li~~~~~~g~~~~ 118 (118)
+++|.++|+.|. +.|+.|+..+|++|+++|++.|++++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 999999999996 47999999999999999999998864
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=178.08 Aligned_cols=117 Identities=22% Similarity=0.371 Sum_probs=114.7
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
+||+||.+|+++|++++|.++|++|+.+|+.+||++|.+|++.|++++|+++|++|++.|++||..||+.++++|++.|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
++.|.+++++|.+.|+.||..+|++||++|+++|+++
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999876
No 3
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=1.1e-27 Score=177.15 Aligned_cols=117 Identities=36% Similarity=0.622 Sum_probs=113.3
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
++|+||.+|+++|++++|.++|+++ .+|..+||++|.+|++.|+.++|+++|++|.+.|++||..||+.+|.+|++.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 4789999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHh-hcCCCccHHHHHHHHHHHHHcccccC
Q 046694 81 VEKGKKFFDEMQ-ARNVKPTETHYACMVYLLIKYNQKAR 118 (118)
Q Consensus 81 ~~~a~~~~~~m~-~~g~~~~~~t~~~li~~~~~~g~~~~ 118 (118)
+++|.++|++|. +.|+.|+..||++|+++|++.|++++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 999999999997 79999999999999999999998764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=3.9e-27 Score=174.26 Aligned_cols=117 Identities=23% Similarity=0.386 Sum_probs=114.7
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
+||+||.+|+++|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|++.|+.||..||+.+|.+|++.|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
++.|.+++..|.+.|+.||..+||+||.+|++.|+++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=4.4e-27 Score=175.51 Aligned_cols=117 Identities=18% Similarity=0.324 Sum_probs=74.3
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLP----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|++.|+.||..+|+.+|.+|+
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35666666666666666666666665 45666666666666666666666666666666666666666666666666
Q ss_pred cCCChhhHHHHHHHHhh--cCCCccHHHHHHHHHHHHHccccc
Q 046694 77 LGGLVEKGKKFFDEMQA--RNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 77 ~~~~~~~a~~~~~~m~~--~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
+.|++++|.++|++|.+ .|+.||..||++||.+|++.|+++
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 66666666666666643 456666666666666666666543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=5.6e-27 Score=174.95 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=111.1
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLP----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
|||.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|++|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999997 57999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 77 LGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
+.|++++|.++|++|.+.|+.||..||+.||.+|++.|+++
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999875
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.79 E-value=6e-19 Score=88.21 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 046694 28 KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77 (118)
Q Consensus 28 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 77 (118)
||+.+||++|++|++.|++++|.++|++|++.|++||..||+.+|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45666666666666666666666666666666666666666666666654
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.77 E-value=1.2e-18 Score=87.16 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 046694 63 YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112 (118)
Q Consensus 63 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~ 112 (118)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||++||++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=4.7e-13 Score=91.59 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=95.5
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLPVK----DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
|+.+||.+.||-...++|..++.+-... +..+||.+|.+- .+....++..+|.+..+.||..|||+++++.+
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~----S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS----SYSVGKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH----HhhccHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 6789999999999999999999988744 556677666543 34445899999999999999999999999999
Q ss_pred cCCChhhH----HHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 77 LGGLVEKG----KKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 77 ~~~~~~~a----~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+.|+++.| .+++.+|++.|+.|...+|.-+|..+++-++
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 99988865 5778899999999999999999999887665
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.35 E-value=1.5e-12 Score=59.62 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.4
Q ss_pred cCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHh
Q 046694 59 DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQ 92 (118)
Q Consensus 59 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (118)
.|++||..||+++|++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999998873
No 11
>PF12854 PPR_1: PPR repeat
Probab=99.21 E-value=2.1e-11 Score=55.80 Aligned_cols=31 Identities=39% Similarity=0.613 Sum_probs=29.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 27 VKDSASWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
.||..|||++|++||+.|++++|.++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 6899999999999999999999999999984
No 12
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.17 E-value=6.6e-11 Score=54.11 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYY 64 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 64 (118)
+||++|.+|++.|++++|.++|++|++.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=1.7e-09 Score=74.15 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 046694 33 WITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~ 110 (118)
++.+..+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 344444444444444444444444332 233333344444444444444444444444332 34444444444433
No 14
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=99.09 E-value=2.6e-10 Score=51.93 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMREDGVEY 63 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 63 (118)
.+|+++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.08 E-value=4.5e-09 Score=72.12 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHh
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPV---KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY----PVSHIGVLTACS 76 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~ 76 (118)
.+...|.+.|++++|..+|+++.. ++..+++.++..+.+.|++++|.+.++.+.+.+-.++ ...+..+...+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 345555555666666666655542 2444555555555555555555555555544322111 112233444444
Q ss_pred cCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 77 LGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+.|++++|.++++++.+.. +.+...+..+...+.+.|+
T Consensus 192 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGD 229 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCC
Confidence 5555555555555554322 1123344444444444444
No 16
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=99.07 E-value=3.2e-09 Score=67.25 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=85.6
Q ss_pred HHHhhhC--CCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC-------------
Q 046694 19 NKIFDRL--PVKDSASWITLILGYGML-----GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLG------------- 78 (118)
Q Consensus 19 ~~~~~~m--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 78 (118)
...|++. ..++..+|..+|..|.+. |..+-....++.|.+-|++-|..+|+.||+++-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 5666665 467999999999999876 67999999999999999999999999999999875
Q ss_pred ---CChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 79 ---GLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 79 ---~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
.+-+-|.+++++|.+.|+.||..|+..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3456688999999999999999999999999998764
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=2.6e-09 Score=73.63 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=81.0
Q ss_pred HhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccH
Q 046694 21 IFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100 (118)
Q Consensus 21 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (118)
++-+.......+|.+||.|.|+--..+.|.+++++-.....+.+..+||.+|.+-. +....++..+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCch
Confidence 44444445668999999999999999999999999999989999999999998754 33448999999999999999
Q ss_pred HHHHHHHHHHHHccccc
Q 046694 101 THYACMVYLLIKYNQKA 117 (118)
Q Consensus 101 ~t~~~li~~~~~~g~~~ 117 (118)
.|+|+++++.++.|+++
T Consensus 274 ~TfNalL~c~akfg~F~ 290 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFE 290 (625)
T ss_pred HhHHHHHHHHHHhcchH
Confidence 99999999999999764
No 18
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.02 E-value=5.3e-10 Score=51.01 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccH
Q 046694 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100 (118)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (118)
.+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 19
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.97 E-value=3.7e-08 Score=56.42 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHhcCCC--------hhhHHHHHHHHhhcCCCccHH
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMREDGV-EYYPVSHIGVLTACSLGGL--------VEKGKKFFDEMQARNVKPTET 101 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~m~~~g~~~~~~ 101 (118)
.|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++... +-....+|+.|...+++|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3556677778888999999999999999999 8999999999999987642 224668899999999999999
Q ss_pred HHHHHHHHHHHc
Q 046694 102 HYACMVYLLIKY 113 (118)
Q Consensus 102 t~~~li~~~~~~ 113 (118)
||+.++..+.++
T Consensus 106 tYnivl~~Llkg 117 (120)
T PF08579_consen 106 TYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 20
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.97 E-value=1.3e-09 Score=49.61 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCc
Q 046694 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP 98 (118)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 98 (118)
.+|++++++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999988
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.92 E-value=2.1e-09 Score=47.75 Aligned_cols=29 Identities=38% Similarity=0.823 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDG 60 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 60 (118)
+||++|++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
No 22
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.81 E-value=7e-09 Score=46.03 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhcCC
Q 046694 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96 (118)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (118)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.80 E-value=1.5e-07 Score=69.70 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=78.4
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
+.+...|.+.|++++|...|+++. .++...++.+...+.+.|+ ++|+..+++..+.. +-+...+..+...+.+.|
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 344555666666777766666553 3355666666666767766 66777777665532 124455566677788889
Q ss_pred ChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 80 LVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
++++|.++++++.+.+.. +..++..+..++.+.|+.+
T Consensus 852 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKA 888 (899)
T ss_pred CHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHH
Confidence 999999999999887654 8889999999999998865
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.80 E-value=1.8e-07 Score=69.27 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=24.4
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
..+..+|.+.|++++|...|+++. ..+...+..+...+.+.|++++|...|+++.
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444555555555444432 1233344444444444444444444444443
No 25
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.73 E-value=1.9e-07 Score=65.12 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC-CC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP-VK-----DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~-~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 77 (118)
.+++.+....+++.+..++.+.+ +| ...|..++|+.|.+.|..++++.+++.=...|+-||..+||.+++.+.+
T Consensus 71 ~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~ 150 (429)
T PF10037_consen 71 IFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLK 150 (429)
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhh
Confidence 34555556667788888877765 22 3456679999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHc
Q 046694 78 GGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113 (118)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~ 113 (118)
.|++..|.++...|...+.-.+..|+.--+.+|.+.
T Consensus 151 ~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 151 KGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999998888777888887777766665
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.59 E-value=4.6e-06 Score=52.56 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=6.5
Q ss_pred HhcCCChhhHHHHHHHH
Q 046694 75 CSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 75 ~~~~~~~~~a~~~~~~m 91 (118)
+.+.|++++|.+.+++.
T Consensus 145 ~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRA 161 (234)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.56 E-value=5.6e-06 Score=52.19 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=90.5
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
..+...|.+.|++++|...|++.. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcc
Confidence 456678889999999999998764 3367788888999999999999999999998753 335667788888999999
Q ss_pred ChhhHHHHHHHHhhcCCC-ccHHHHHHHHHHHHHccccc
Q 046694 80 LVEKGKKFFDEMQARNVK-PTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~-~~~~t~~~li~~~~~~g~~~ 117 (118)
++++|.+.+++..+.... .....+..+-.++.+.|+.+
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 999999999999765332 23556667777777777654
No 28
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=98.49 E-value=2.8e-06 Score=56.32 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=83.9
Q ss_pred HHHHhhhCC--CCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC----------
Q 046694 18 ANKIFDRLP--VKDSASWITLILGYGML-----GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL---------- 80 (118)
Q Consensus 18 a~~~~~~m~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------- 80 (118)
.++.|+... ++|..+|-+.+..+... +.++-....++.|++-|++-|..+|+.+|+.+-|...
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456676666 67888999999888766 5688899999999999999999999999999987643
Q ss_pred ------hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 81 ------VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 81 ------~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
-+-+++++++|...|+.||-.+-..|+.++++-+.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 33477999999999999999999999999998763
No 29
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=8.7e-06 Score=56.55 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=93.8
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
+|+..+...++++.|+.+|+++.+.+......+.+.+...++-.+|.+++.+..... +-+........+.+.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 466777788999999999999997777777788899989999999999999998552 3366777777788889999999
Q ss_pred HHHHHHHHhhcCCCc-cHHHHHHHHHHHHHccccc
Q 046694 84 GKKFFDEMQARNVKP-TETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 84 a~~~~~~m~~~g~~~-~~~t~~~li~~~~~~g~~~ 117 (118)
|.++.++..+ ..| +..+|..|..+|.+.|+++
T Consensus 253 AL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 253 ALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHH
Confidence 9999999977 345 4779999999999999876
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=98.41 E-value=1.3e-05 Score=58.03 Aligned_cols=112 Identities=11% Similarity=0.016 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhcCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY-PVSHIGVLTACSLGG 79 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 79 (118)
.+-..+...|++++|+..|++.. .| +...|..+-..+...|++++|...+++..+.. |+ ...+..+...+...|
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhcc
Confidence 44456667788888888887654 23 55567777777788888888888888876653 32 222333344455677
Q ss_pred ChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 80 LVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
++++|...+++..+..-+-+...+..+-.++...|+.+
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 78888888877765432223444566666676777654
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.40 E-value=2e-06 Score=56.93 Aligned_cols=109 Identities=15% Similarity=0.095 Sum_probs=48.4
Q ss_pred HHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 7 DFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
..+.+.|+.++|++.|++.. .| |....+.++..+...|+.+++.++++...+.. +.|...+..+-.++...|+.++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccc
Confidence 34444555555555554443 22 34444555555555555555555555544332 2333444455555555555555
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 84 GKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 84 a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
|..++++..+.. +.|+.+...+.+++...|+.+
T Consensus 233 Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 233 ALEYLEKALKLN-PDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHHHHS-TT-HHHHHHHHHHHT------
T ss_pred cccccccccccc-ccccccccccccccccccccc
Confidence 555555554321 224555555555555555543
No 32
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.38 E-value=3.3e-06 Score=48.52 Aligned_cols=73 Identities=7% Similarity=0.099 Sum_probs=63.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC-----CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCccHHHHHHH
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP-----VKDSASWITLILGYGMLG--------ELDVAINLFEAMREDGVEYYPVSHIGV 71 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~p~~~~~~~l 71 (118)
.|..+...+++.....+|+.++ .|++.+|+.++.+.++.. .+.+.+.+++.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 4566667799999999998876 578899999999988773 477899999999999999999999999
Q ss_pred HHHHhc
Q 046694 72 LTACSL 77 (118)
Q Consensus 72 l~~~~~ 77 (118)
++.+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 998765
No 33
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=3.3e-05 Score=45.53 Aligned_cols=99 Identities=21% Similarity=0.154 Sum_probs=80.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
+...+.+.|++++|...|++.. ..+...|..+-..+.+.|++++|...+++..+.. +.+...+..+-..+...|+.
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 4567788999999999998764 3477888889999999999999999999987664 44677777788899999999
Q ss_pred hhHHHHHHHHhhcCCCccHHHHHHH
Q 046694 82 EKGKKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~t~~~l 106 (118)
+.|...|+...+. .|+...+..+
T Consensus 102 ~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 102 ESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHHHHHHHHHh--ccccchHHHH
Confidence 9999999998774 4555554433
No 34
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.33 E-value=2.3e-05 Score=57.34 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 7 DFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
..+...|++++|...|++.. ..+...|..+-..+...|++++|...|++..+.. +.+...+..+-..+.+.|++++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHH
Confidence 33444455555555544332 1234444445555555555555555555544331 1123334444444455555555
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 84 GKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 84 a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
|...|++..+. .+.+...++.+-.++...|++
T Consensus 452 A~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 452 SMATFRRCKKN-FPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHHHHh-CCCChHHHHHHHHHHHHccCH
Confidence 55555554432 122344455555555555443
No 35
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=4.6e-05 Score=45.87 Aligned_cols=89 Identities=17% Similarity=0.008 Sum_probs=76.4
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
+-..+...|++++|...|++.. ..+...|..+-..+...|++++|...|++..... +.+...+..+-.++...|+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 3456778999999999999765 3488889999999999999999999999998753 34778888888899999999
Q ss_pred hhHHHHHHHHhhc
Q 046694 82 EKGKKFFDEMQAR 94 (118)
Q Consensus 82 ~~a~~~~~~m~~~ 94 (118)
++|...|+...+.
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998774
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.29 E-value=4.5e-06 Score=55.28 Aligned_cols=107 Identities=16% Similarity=0.245 Sum_probs=44.6
Q ss_pred HHHHHhcCCHHHHHHHhhhCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCC
Q 046694 6 LDFYTRTGRIDLANKIFDRLP-----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGG 79 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 79 (118)
+..+.+.++++++..++++.. .++...|..+-..+.+.|++++|++.+++..+. .| |....+.++..+...|
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence 344444455555544444421 123444444444444555555555555554433 23 2344444444445555
Q ss_pred ChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 80 LVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+.+++.++++...+.. +.|+..+..+-.+|...|+
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc
Confidence 5555444444443322 3333344444444444443
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.28 E-value=4.7e-05 Score=56.28 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=18.3
Q ss_pred HHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 72 LTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
...+.+.|++++|...+++..+.. +.+...+..+-..|.+.|+
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 334444444444444444443322 1123344444444444444
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.25 E-value=4.3e-05 Score=56.45 Aligned_cols=112 Identities=5% Similarity=-0.088 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
.+...+.+.|++++|...|++.. ..+...+..+...+...|++++|...++.+....-.+ ...+..+ ..+...|+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCC
Confidence 34455666777777777776654 2355666777777777777777777777665442222 2222222 23566777
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
+++|...++.+.+..-.++...+..+..++.+.|+.+
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 7777777777755543334444455556666666543
No 39
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=2.4e-05 Score=41.96 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=73.4
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLG 78 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (118)
|..+...+...|++++|..+|++.. ..+...+..+...+...+++++|.+.|++..... +.+...+..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 4556778888999999999998764 2344677788888888999999999999987653 33446788888899999
Q ss_pred CChhhHHHHHHHHhh
Q 046694 79 GLVEKGKKFFDEMQA 93 (118)
Q Consensus 79 ~~~~~a~~~~~~m~~ 93 (118)
|+.+.|.+.+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999999988755
No 40
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.24 E-value=6.5e-05 Score=55.04 Aligned_cols=114 Identities=14% Similarity=-0.058 Sum_probs=88.9
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLG 78 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (118)
|+.+...+...|++++|+..|++.. .| +...|..+-..+...|++++|...|++..+.. +-+...|..+-..+...
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3445566778899999999998765 33 46678888888889999999999999987652 23577888888899999
Q ss_pred CChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 79 GLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
|++++|...|++..+.. +.+...+..+-.++.+.|+.+
T Consensus 413 g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred CCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHH
Confidence 99999999999987753 234666777778888877764
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.20 E-value=1.7e-05 Score=59.29 Aligned_cols=85 Identities=20% Similarity=0.147 Sum_probs=78.2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHH
Q 046694 28 KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 28 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
++..+|..++..-..+|+.+.|..++.+|++.|++.+.--|-.+|-+ .++...++.+...|.+.|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 68999999999999999999999999999999999999888888766 899999999999999999999999999888
Q ss_pred HHHHHccc
Q 046694 108 YLLIKYNQ 115 (118)
Q Consensus 108 ~~~~~~g~ 115 (118)
..+.++|.
T Consensus 279 ip~l~N~~ 286 (1088)
T KOG4318|consen 279 IPQLSNGQ 286 (1088)
T ss_pred Hhhhcchh
Confidence 87777654
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.17 E-value=1.6e-06 Score=64.52 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHH
Q 046694 27 VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l 106 (118)
.||.+||..+|.-||..|+.+.|- +|.-|+-...+.+...|+.++.+-..+++.+.+. .|-..||+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 688899999999999999999888 9998887777788999999999999999888776 8899999999
Q ss_pred HHHHHHccccc
Q 046694 107 VYLLIKYNQKA 117 (118)
Q Consensus 107 i~~~~~~g~~~ 117 (118)
..+|.+.||+.
T Consensus 90 l~ayr~hGDli 100 (1088)
T KOG4318|consen 90 LKAYRIHGDLI 100 (1088)
T ss_pred HHHHHhccchH
Confidence 99999999864
No 43
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=0.00016 Score=41.27 Aligned_cols=93 Identities=16% Similarity=0.041 Sum_probs=74.4
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC--CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHH
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP--VKD----SASWITLILGYGMLGELDVAINLFEAMREDG--VEYYPVSHIGVLTA 74 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~ 74 (118)
-.+...+.+.|++++|...|++.. .|+ ...+..+...+.+.|+++.|.+.|++..... .+.....+..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 356677889999999999999885 232 3456678899999999999999999997642 11224567778888
Q ss_pred HhcCCChhhHHHHHHHHhhcC
Q 046694 75 CSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g 95 (118)
+.+.|+.+.|.+.++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 899999999999999998764
No 44
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=98.12 E-value=0.00014 Score=42.91 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=35.5
Q ss_pred CCCccHHHHHHHHHHHhcCCChhhHHHHHHHH-hhcCCCccHHHHHHHHHHHHH
Q 046694 60 GVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-QARNVKPTETHYACMVYLLIK 112 (118)
Q Consensus 60 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m-~~~g~~~~~~t~~~li~~~~~ 112 (118)
...|+..+..+++.+|+..+++..|.++.+.+ ...+++.+..+|..|++-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34566777777777777777777777777776 556666667777776665543
No 45
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.10 E-value=0.0001 Score=49.45 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCC--CHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVK--DSA---SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLG 78 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (118)
..+.+|.+.++++.|.+.++.|++. |.. ...+.+..+.-...+.+|..+|+++.+ ...+++.+.+.+.-+....
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHh
Confidence 3578899999999999999998732 322 222333333333469999999999754 4678889999999999999
Q ss_pred CChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 79 GLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 79 ~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
|++++|.+++.+..+.. +-++.|..+++-+..-.|+-
T Consensus 215 ~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp T-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-T
T ss_pred CCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCC
Confidence 99999999999986544 33577777787777666643
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=98.03 E-value=0.00026 Score=51.37 Aligned_cols=111 Identities=16% Similarity=0.008 Sum_probs=77.9
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhc
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSL 77 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 77 (118)
|..+-.++...|++++|...+++.. .| +...+..+...+...|++++|...+++..+.. +| +...+..+-..+..
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSL 453 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHh
Confidence 3456677889999999999999875 34 33334444555677899999999999987653 34 34556777778889
Q ss_pred CCChhhHHHHHHHHhhcCCCcc-HHHHHHHHHHHHHccc
Q 046694 78 GGLVEKGKKFFDEMQARNVKPT-ETHYACMVYLLIKYNQ 115 (118)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~-~~t~~~li~~~~~~g~ 115 (118)
.|+.++|...+.++... .|+ ....+.+-..|.+.|+
T Consensus 454 ~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 454 KGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred CCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH
Confidence 99999999999987543 333 3444455555555553
No 47
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.01 E-value=1.2e-05 Score=43.81 Aligned_cols=76 Identities=22% Similarity=0.223 Sum_probs=55.9
Q ss_pred cCCHHHHHHHhhhCC--CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHH
Q 046694 12 TGRIDLANKIFDRLP--VK---DSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
.|+++.|+.+|+++. .| +...+-.+-.+|.+.|++++|..++++ .+ ..| +....-.+-.++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 578999999999886 23 344555578999999999999999998 22 223 2333345578888999999999
Q ss_pred HHHHH
Q 046694 86 KFFDE 90 (118)
Q Consensus 86 ~~~~~ 90 (118)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 48
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.00044 Score=47.66 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=78.9
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 7 DFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
......|++++|+.+|++.. ..+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|...|+++.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 45567899999999999775 3477888888999999999999999999998753 2367788888899999999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHH
Q 046694 84 GKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 84 a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
|...|++..+. .|+......++
T Consensus 89 A~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 89 AKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHH
Confidence 99999999774 34444444333
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.97 E-value=0.00025 Score=42.68 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=76.2
Q ss_pred HHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 20 KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 20 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
.+|++-.+-+...+...-..+...|++++|...|++..... +.+...+..+-.++.+.|++++|...|++..+.. +.+
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASH 91 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 34444433344446667788889999999999999988753 3478889999999999999999999999998753 447
Q ss_pred HHHHHHHHHHHHHccccc
Q 046694 100 ETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 100 ~~t~~~li~~~~~~g~~~ 117 (118)
...+..+-.++.+.|+.+
T Consensus 92 ~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred cHHHHHHHHHHHHcCCHH
Confidence 888888999999888765
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.96 E-value=0.00037 Score=48.64 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChh
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~ 82 (118)
.+...+...|+.++|.+++++........--.++.+....++++++++..+...+. .| |.....++-+.+.+.++++
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 34567778899999998887665322222222445555668899999999888765 34 5666888888999999999
Q ss_pred hHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 83 KGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
+|.+.|+...+ ..|+..++..+-.++-+.|+.+
T Consensus 346 ~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 346 EASLAFRAALK--QRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999987 4689999889999998888754
No 51
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00076 Score=44.12 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=88.6
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGL 80 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~ 80 (118)
......+.|++..|...|.+.. .+|...|+.+--+|-+.|+++.|..-|.+..+- .| +...+|.+.-.+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCC
Confidence 4566678899999999999775 459999999999999999999999999998775 33 66778888888888999
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
++.|..++......+- -|...-..+....+.-|+++
T Consensus 184 ~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 184 LEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChH
Confidence 9999999999866543 35566666666666666654
No 52
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.96 E-value=0.00014 Score=49.33 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=80.0
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
+..|.-+...|+...|.++-.+.+-|+..-|...+.+++..++|++..++... +-++.-|-.++.+|.+.|+.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44567778899999999999999999999999999999999999998886543 225588999999999999999
Q ss_pred hHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 83 KGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
+|.++..++ ++..-+..|.++|++
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~ 278 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDY 278 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCH
Confidence 999888872 224456666666654
No 53
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.95 E-value=0.00048 Score=53.17 Aligned_cols=103 Identities=7% Similarity=-0.025 Sum_probs=45.8
Q ss_pred HhcCCHHHHHHHhhhCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHH
Q 046694 10 TRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKF 87 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 87 (118)
...|++++|+..|+++. .|+...+..+...+.+.|++++|...+++..+.. +.+...+..+.....+.|++++|...
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 35666666666665543 1222333444444555555555555555554432 11112222222222233555555555
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 88 FDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 88 ~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+++..+. .|+...+..+-.++.+.|+
T Consensus 599 ~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 599 LTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 5544432 2334444444444444444
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.94 E-value=0.0007 Score=42.95 Aligned_cols=106 Identities=8% Similarity=0.052 Sum_probs=78.5
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHH-HHhcCC--HHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILG-YGMLGE--LDVAINLFEAMREDGVEYYPVSHIGVLTAC 75 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~-~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 75 (118)
|..|-..|...|++++|...|++.. ..+...+..+-.+ +...|+ .++|.+++++..+..- -+...+..+-..+
T Consensus 76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~ 154 (198)
T PRK10370 76 WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHH
Confidence 5566778889999999999998665 3377777777765 466676 5999999999987632 2667788888888
Q ss_pred hcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~ 110 (118)
.+.|++++|...|+++.+.. .|+..-+. +|+..
T Consensus 155 ~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~i 187 (198)
T PRK10370 155 FMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVESI 187 (198)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHHH
Confidence 89999999999999997743 44444433 33543
No 55
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.93 E-value=0.00018 Score=43.10 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH-----hhcCCCccHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-----QARNVKPTETHYAC 105 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m-----~~~g~~~~~~t~~~ 105 (118)
....++..+...|++++|.++.+.+.... +.+...|..++.++...|+...|.+.|+.+ .+.|+.|+..|-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 45566667778999999999999998752 458999999999999999999999999987 46899999877543
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.92 E-value=0.0007 Score=45.46 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGG 79 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 79 (118)
.+-..|.+.|+.++|...|++.. ..+...|+.+-..+...|++++|...|++..+. .| +...+..+-..+...|
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 34456677788888888887654 336677888888888888888888888887754 34 3566666777777788
Q ss_pred ChhhHHHHHHHHhhc
Q 046694 80 LVEKGKKFFDEMQAR 94 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~ 94 (118)
++++|.+.|+...+.
T Consensus 147 ~~~eA~~~~~~al~~ 161 (296)
T PRK11189 147 RYELAQDDLLAFYQD 161 (296)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888887654
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.92 E-value=0.0004 Score=54.47 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGG 79 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 79 (118)
.+-..+.+.|++++|+..|++.. ..+...+..+...|...|++++|.+.++...+. .| +......+-.++...|
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCC
Confidence 34556677788888888777664 236677777888888888888888888876543 33 3455566666777788
Q ss_pred ChhhHHHHHHHHhhcCCC--c---cHHHHHHHHHHHHHcccc
Q 046694 80 LVEKGKKFFDEMQARNVK--P---TETHYACMVYLLIKYNQK 116 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~--~---~~~t~~~li~~~~~~g~~ 116 (118)
+.++|.++++++....-. | +...+..+-..+.+.|+.
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCH
Confidence 888888888887654321 1 223444445556665554
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.91 E-value=0.00099 Score=50.25 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=71.7
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
..+...+.+.|++++|..+|++.. ..+...+..+...+...|++++|...+++..+.. +.+.. +..+-..+...|
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCC
Confidence 345556777788888888887742 3355566677777777888888888888876651 22344 666777777788
Q ss_pred ChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 80 LVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+.++|...+++..+.... +...+..+..++.+.|.
T Consensus 131 ~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 888888888887664322 34444455555555443
No 59
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00011 Score=48.99 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=82.9
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHH---HH-HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLI---LG-YGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li---~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
+|-.+|...-+.+.++.|+.+|.+.......+|...+ .. |...++.+.|.++|+...+. +.-+...|..-++-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 3677888888999999999999988644333333333 22 33357788899999999765 4557788888899999
Q ss_pred cCCChhhHHHHHHHHhhcCCCcc---HHHHHHHHHHHHHccccc
Q 046694 77 LGGLVEKGKKFFDEMQARNVKPT---ETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~---~~t~~~li~~~~~~g~~~ 117 (118)
+.++.+.|..+|++.... +.++ ...|...++.=.+.|+++
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~ 124 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLE 124 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999664 3333 358888888888887654
No 60
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.91 E-value=0.00037 Score=53.75 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhhCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHHHHHH
Q 046694 13 GRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGKKFFD 89 (118)
Q Consensus 13 ~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (118)
|++++|...|++.. .|+...|..+-..+.+.|++++|...|++..+. .| +...++.+-..+...|+.++|...++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666665543 345555666666666666666666666665554 23 34445555556666666666666666
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 90 EMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 90 ~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
+..+.. +-+...+..+-.++.+.|+.+
T Consensus 668 ~AL~l~-P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 668 RAHKGL-PDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 665532 224555666666666666543
No 61
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.91 E-value=0.00014 Score=51.12 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=75.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMRED--GVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l 106 (118)
+......+++.+....+++.+..++-+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+=||..|+|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5566777888888888899999999999865 33333445569999999999999999999999999999999999999
Q ss_pred HHHHHHccccc
Q 046694 107 VYLLIKYNQKA 117 (118)
Q Consensus 107 i~~~~~~g~~~ 117 (118)
|+.+.+.|++.
T Consensus 145 md~fl~~~~~~ 155 (429)
T PF10037_consen 145 MDHFLKKGNYK 155 (429)
T ss_pred HHHHhhcccHH
Confidence 99999999864
No 62
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=4.6e-05 Score=55.17 Aligned_cols=112 Identities=14% Similarity=0.006 Sum_probs=86.7
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---HH
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL---TA 74 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~ 74 (118)
||.++-.+|+-.++.+.|++.|++-. .....+|+.+-.-+.....++.|...|+.-. ..|+..||++- -.
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTV 498 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhh
Confidence 79999999999999999999999775 3366788888888888899999999998755 56777888764 45
Q ss_pred HhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 75 CSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
|.|.+.++.|+..|++..+-+.. +.+....+-..+.+.|+.|
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhh
Confidence 77889999999998888764432 4455555566666666544
No 63
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.89 E-value=0.00059 Score=41.90 Aligned_cols=114 Identities=14% Similarity=0.042 Sum_probs=74.9
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC--CC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP--VK----DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 75 (118)
|..+...+...|++++|+..|++.. .+ ...+|..+-..+...|++++|...+++..+.. +....++..+...+
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3455666777899999999988763 22 23478888888999999999999999887642 22345556666666
Q ss_pred h-------cCCChhhHHHHHHHHh---hcCCCccHHHHHHHHHHHHHcccc
Q 046694 76 S-------LGGLVEKGKKFFDEMQ---ARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 76 ~-------~~~~~~~a~~~~~~m~---~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
. +.|+++.|...+++-. +..+..++..+......+...|++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 6 7888887776666542 122334444445555555555554
No 64
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.88 E-value=0.00018 Score=46.03 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=51.3
Q ss_pred CCCHhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh-hhHHHHH
Q 046694 27 VKDSASWITLILGYGMLG----------------ELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV-EKGKKFF 88 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~ 88 (118)
..|+.+|+.|++.+=+.. +-+-|++++++|...|+-||..++..+++.+++.+.. .+..++.
T Consensus 84 ~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmm 162 (228)
T PF06239_consen 84 EKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMM 162 (228)
T ss_pred cccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHH
Confidence 579999999999886632 3588999999999999999999999999999988864 3344433
No 65
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.00055 Score=48.31 Aligned_cols=107 Identities=11% Similarity=0.021 Sum_probs=88.9
Q ss_pred HHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhcCCChhh
Q 046694 8 FYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY-PVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 83 (118)
.+...|.+++|+..++.+. .| |+.-+......+.+.|+..+|.+.++++... .|+ ....-.+-+++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 4556788999999998875 34 7777778889999999999999999999875 565 5666667888999999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 84 GKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 84 a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
|+++++..... .+-|+..|.-|-++|.+.|+..
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchH
Confidence 99999998663 5668999999999999998754
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.87 E-value=0.00018 Score=48.31 Aligned_cols=106 Identities=9% Similarity=0.056 Sum_probs=78.3
Q ss_pred HHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH---HHHHHHHhcCCChhhH
Q 046694 8 FYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH---IGVLTACSLGGLVEKG 84 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a 84 (118)
.+...|++++|.+++++- .+.-.....+..|.+.++++.|.+.++.|++- ..|.... .+.++...-...++.|
T Consensus 111 i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchhHHHH
Confidence 456689999999999876 45666678889999999999999999999864 3343333 3334444344579999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHcccccC
Q 046694 85 KKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118 (118)
Q Consensus 85 ~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~ 118 (118)
..+|+++.+. +.+++.+.|.+.-+....|++++
T Consensus 187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHH
Confidence 9999998654 67889999999999988888763
No 67
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.00039 Score=41.79 Aligned_cols=112 Identities=11% Similarity=0.064 Sum_probs=77.4
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCC--CH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH--HHHHHHHHH
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLPVK--DS----ASWITLILGYGMLGELDVAINLFEAMREDGVEYYP--VSHIGVLTA 74 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~~~--~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~ 74 (118)
..++..+ ..++...+...++++... +. ...=.+-..+...|++++|...|+........|+. .....+-..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 3445555 478888888888877632 11 12222346777889999999999999887633432 344456788
Q ss_pred HhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 75 CSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
+...|++++|...++......+ ....+...=++|.+.|+.+
T Consensus 95 ~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHH
Confidence 8899999999999977544333 3445667778888888765
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.85 E-value=0.00075 Score=50.33 Aligned_cols=110 Identities=11% Similarity=0.059 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGL 80 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~ 80 (118)
|.....+.|+.++|..+++... .| +......+...+.+.+.+++|+..+++..+. .| +......+-.++.+.|+
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence 3445567788999999998665 34 6677888888888999999999999988776 34 56667777778888899
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
.++|..+|++..+.+ .-+..++..+-.++-+.|+.+
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 999999999987732 234777788888887777754
No 69
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.78 E-value=0.00059 Score=40.28 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=69.1
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCC-------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cC
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLP-------------------VKDSASWITLILGYGMLGELDVAINLFEAMRE-DG 60 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~-------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~ 60 (118)
++.++|.++++.|+++....+.+..- .|+..+-.+++.+|+..|++..|+++.+...+ -+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 36789999999999999988886542 25788999999999999999999999999964 47
Q ss_pred CCccHHHHHHHHHHHhcCCCh
Q 046694 61 VEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 61 ~~p~~~~~~~ll~~~~~~~~~ 81 (118)
++.+..+|..+++.+....+.
T Consensus 84 I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 84 IPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred CCCCHHHHHHHHHHHHHhcCC
Confidence 888999999999988866553
No 70
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.78 E-value=0.0012 Score=49.80 Aligned_cols=110 Identities=9% Similarity=0.128 Sum_probs=89.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPV---KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
.+......|+.++|+++|.+... .+...+..+...+.+.|++++|..+|++..+.. +.+......+...+.+.|+.
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 45677889999999999998763 355568999999999999999999999987652 33566677888889999999
Q ss_pred hhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 82 EKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
++|...+++..+. .+.+.. +..+-.++...|+.+
T Consensus 100 ~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~ 133 (765)
T PRK10049 100 DEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHW 133 (765)
T ss_pred HHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHH
Confidence 9999999999775 233455 888888888887754
No 71
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.76 E-value=0.0016 Score=51.25 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=87.3
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHH
Q 046694 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
...+...|+.++|+.+++.- ..+...+..+-..+.+.|+.++|+..|++..+.. +.+......+...+...|+.++|.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45678899999999999843 3455667788899999999999999999998763 336888999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 86 KFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 86 ~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
+.++...+.. +.+...+..+-.++.+.|+.+
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHH
Confidence 9999886532 224556667777887777764
No 72
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00087 Score=35.59 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~ 111 (118)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+..++..+..++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35566777888999999999999987653 2344778888888899999999999999987754 334467778888887
Q ss_pred Hccccc
Q 046694 112 KYNQKA 117 (118)
Q Consensus 112 ~~g~~~ 117 (118)
..|+.+
T Consensus 80 ~~~~~~ 85 (100)
T cd00189 80 KLGKYE 85 (100)
T ss_pred HHHhHH
Confidence 777653
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.70 E-value=0.0011 Score=38.93 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=70.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
+......+...+...|++++|.+.|+.....+ +.+...+..+-..+.+.|+++.|..+++...+.+ +.+..++..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 44556677788889999999999999997753 3477888888899999999999999999987754 446777777888
Q ss_pred HHHHccccc
Q 046694 109 LLIKYNQKA 117 (118)
Q Consensus 109 ~~~~~g~~~ 117 (118)
+|...|+.+
T Consensus 94 ~~~~~g~~~ 102 (135)
T TIGR02552 94 CLLALGEPE 102 (135)
T ss_pred HHHHcCCHH
Confidence 888888764
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.67 E-value=0.002 Score=45.08 Aligned_cols=73 Identities=8% Similarity=-0.113 Sum_probs=30.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHH--HHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 41 GMLGELDVAINLFEAMREDGVEYYPVSHI--GVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.+.|+++.|.+.+.++.+. .|+...+. .....+...|+.+.|.+.++++.+.. +-++.....+...|.+.|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhH
Confidence 4445555555555554432 22222111 12334444455555555555544432 12344444444444444443
No 75
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.67 E-value=0.0013 Score=50.00 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=46.2
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCC-CHhhHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPVK-DSASWITL--ILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
++..+...|+.++|+..+++...| +...+..+ ...|...|++++|.++|+++.+.. +-+...+..+...+...++.
T Consensus 74 ll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 74 WLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCH
Confidence 345555556666666666655544 22222222 234555566666666666665442 11334444555555666666
Q ss_pred hhHHHHHHHHhh
Q 046694 82 EKGKKFFDEMQA 93 (118)
Q Consensus 82 ~~a~~~~~~m~~ 93 (118)
++|.+.++++..
T Consensus 153 ~eAl~~l~~l~~ 164 (822)
T PRK14574 153 GVVLKQATELAE 164 (822)
T ss_pred HHHHHHHHHhcc
Confidence 666666666544
No 76
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=0.00015 Score=37.58 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 42 MLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
+.|++++|.++|++..... +-+......+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777777777765542 12555555667777777777777777776655
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.66 E-value=0.0032 Score=40.81 Aligned_cols=111 Identities=14% Similarity=-0.009 Sum_probs=81.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGL 80 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~ 80 (118)
|--.|...|+...|.+-+++-. ..+..+|..+-..|.+.|..+.|.+-|++-.+. .| +..+.|..---+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCC
Confidence 4456788888888888888765 335667888888888889999999888887664 34 45666666666778888
Q ss_pred hhhHHHHHHHHhhcCCCc-cHHHHHHHHHHHHHccccc
Q 046694 81 VEKGKKFFDEMQARNVKP-TETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~-~~~t~~~li~~~~~~g~~~ 117 (118)
+++|...|++....---| -..||.++--|..+.|+.+
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCch
Confidence 889888888876544332 3567777777777777654
No 78
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.65 E-value=0.00031 Score=42.13 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCccHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMR-----EDGVEYYPVSHI 69 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~~~~ 69 (118)
.++..+...|++++|..+.+... .| |-..|..+|.+|...|+..+|.+.|++++ +-|+.|+..+-.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667788999999999999876 33 78899999999999999999999999995 349999876643
No 79
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.65 E-value=0.00015 Score=52.90 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=70.7
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhc
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPV--K-DSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSL 77 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 77 (118)
|+.|-..+-..|++-.|+..|++-.+ | =...|-.+-..|...+.+++|+..+.+... ..| ..+.|..+-..|-.
T Consensus 221 wsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 221 WSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYE 298 (966)
T ss_pred ehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEec
Confidence 56666677777888888888876652 3 233566666666666666666666666443 244 34566666666666
Q ss_pred CCChhhHHHHHHHHhhcCCCcc-HHHHHHHHHHHHHccccc
Q 046694 78 GGLVEKGKKFFDEMQARNVKPT-ETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~-~~t~~~li~~~~~~g~~~ 117 (118)
.|++|.|+..|++..+ +.|+ ...|+.|-.++...|+++
T Consensus 299 qG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred cccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchH
Confidence 6777777777766655 3444 556666666666666654
No 80
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.64 E-value=0.0004 Score=35.96 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=48.6
Q ss_pred HhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 046694 10 TRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 72 (118)
.+.|++++|+.+|++.. .| +...+-.+...|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46899999999999875 33 7888889999999999999999999999876 45544444443
No 81
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.63 E-value=0.0017 Score=45.52 Aligned_cols=112 Identities=12% Similarity=-0.029 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VKDSAS---WITLILGYGMLGELDVAINLFEAMREDGVEYYP---VSHIGVLTAC 75 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~ 75 (118)
.+...+...|+.++|.+++++.. .||... ...........++.+.+.+.++...+. .|+. ....++-..+
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLL 345 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH
Confidence 45677888999999999998775 343321 122222233457788888888877654 3433 4555777888
Q ss_pred hcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
.+.|++++|.+.|+........|+...+..+...+-+.|+.+
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence 899999999999997555556789888889999998888754
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0036 Score=42.81 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=74.8
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH-HHHHHhcC-
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG-VLTACSLG- 78 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~- 78 (118)
+.|-.+|.+.|...+|++.|+.-. .|-+.||-.+-+.|.+..+++.|+.+|.+-.+. .|-.+||.. +-+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 356788999999999999998664 567788888999999999999999998887654 344444433 33333333
Q ss_pred ---------------------------------CChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 79 ---------------------------------GLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 79 ---------------------------------~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
+++|.|.++|+++...|+. ++..|+.+--||.-.+++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 4555555666666666654 455555555555544443
No 83
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0027 Score=45.02 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=72.4
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhc
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSL 77 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 77 (118)
|+.|-+-|....+...|+.-|+.-. ..|-..|-.+-++|.-.+++.=|+-.|++... .+| |...|.++-++|.+
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEK 444 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHH
Confidence 4455555555555555555554332 33666666777777777777777777776544 355 67888888888888
Q ss_pred CCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 78 GGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
.+++++|++.|......|-. +...+..|-+.|-+-++
T Consensus 445 l~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKD 481 (559)
T ss_pred hccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHh
Confidence 88888888888887665533 45666666666655444
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.59 E-value=0.0026 Score=38.86 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=72.0
Q ss_pred HHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 7 DFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
..+...|++++|+++|+-.- .| +..-|-.|--.+-..|++++|+..|........ -|+..+-.+-.++...|+.+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 34567899999999999664 34 666777777888888999999999999987653 378888888899999999999
Q ss_pred HHHHHHHHhhc
Q 046694 84 GKKFFDEMQAR 94 (118)
Q Consensus 84 a~~~~~~m~~~ 94 (118)
|.+.|+.....
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.56 E-value=0.0039 Score=47.48 Aligned_cols=107 Identities=10% Similarity=-0.017 Sum_probs=82.0
Q ss_pred HHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 6 LDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
...|...|++++|+.+|+++. .| +...+..+...+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 346777899999999999886 23 6677778889999999999999999998765 566666655555554566666
Q ss_pred hHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 83 KGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+|.+.++++.+.. +-+...+..++.++.+.|-
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 6999999998864 3356677777787777663
No 86
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.54 E-value=0.0066 Score=37.44 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=71.3
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC--CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHH
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP--VKD----SASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTAC 75 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 75 (118)
..+...+...|++++|...|++.. .|+ ...+..+...+.+.|++++|...+++..+. .| +...+..+...+
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 344556778899999999998764 222 457888889999999999999999998764 33 455555566666
Q ss_pred hcCCC-------h-------hhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 76 SLGGL-------V-------EKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 76 ~~~~~-------~-------~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
...|+ . ++|.+++++... .++..+..++..+...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhcCc
Confidence 66555 3 444444444433 233346666666666554
No 87
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.51 E-value=0.0051 Score=39.05 Aligned_cols=88 Identities=14% Similarity=0.058 Sum_probs=70.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH-hcCCC--hhhHHHHHHHHhhcCCCccHHHHH
Q 046694 28 KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC-SLGGL--VEKGKKFFDEMQARNVKPTETHYA 104 (118)
Q Consensus 28 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~--~~~a~~~~~~m~~~g~~~~~~t~~ 104 (118)
.|...|..+-..|...|++++|...|++..+.. +-+...+..+-.++ ...|+ .++|.+++++..+.... +...+.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~ 148 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALM 148 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHH
Confidence 488899999999999999999999999987753 22667777777664 67677 59999999999886533 677888
Q ss_pred HHHHHHHHccccc
Q 046694 105 CMVYLLIKYNQKA 117 (118)
Q Consensus 105 ~li~~~~~~g~~~ 117 (118)
.+-..+.+.|+++
T Consensus 149 ~LA~~~~~~g~~~ 161 (198)
T PRK10370 149 LLASDAFMQADYA 161 (198)
T ss_pred HHHHHHHHcCCHH
Confidence 8888888888875
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.50 E-value=0.003 Score=40.69 Aligned_cols=45 Identities=18% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHhcCCChhhHHHHHHHHhhcCC--CccHHHHHHHHHHHHHccccc
Q 046694 73 TACSLGGLVEKGKKFFDEMQARNV--KPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~t~~~li~~~~~~g~~~ 117 (118)
..+.+.|+++.|...+++..+..- +.....+..+..++.+.|+.+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 345566777777777777654321 223556667777777777654
No 89
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.50 E-value=0.0015 Score=39.18 Aligned_cols=84 Identities=11% Similarity=0.115 Sum_probs=64.2
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC--CCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPV--KDS----ASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLG 78 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (118)
+-..+...|++++|...|++... |+. ...-.+-..+...|++++|+..++...... .....+...-+.+.+.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHC
Confidence 34677789999999999998762 322 234446677888999999999997754332 3455667788899999
Q ss_pred CChhhHHHHHHH
Q 046694 79 GLVEKGKKFFDE 90 (118)
Q Consensus 79 ~~~~~a~~~~~~ 90 (118)
|+.++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 999999999976
No 90
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.49 E-value=0.0022 Score=47.17 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc-HHHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYY-PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT-ETHYACMVYL 109 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~t~~~li~~ 109 (118)
.+|.+-..|-+.|++++|+..+++..+ ++|+ ...|+.+-+.|-..|+++.|...+.+... +.|. ....+.|-..
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASI 465 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHH
Confidence 334444444444444444444444332 2333 23444444444444444444444444332 2222 3444455555
Q ss_pred HHHcccc
Q 046694 110 LIKYNQK 116 (118)
Q Consensus 110 ~~~~g~~ 116 (118)
|..+|++
T Consensus 466 ~kDsGni 472 (966)
T KOG4626|consen 466 YKDSGNI 472 (966)
T ss_pred hhccCCc
Confidence 5555544
No 91
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.0014 Score=33.69 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=34.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 38 LGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
..+.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|..+|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556677777777777766553 22556666666666677777777777776644
No 92
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0041 Score=41.17 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=72.4
Q ss_pred HHhcCCHHHHHHHhhhCCCC-CHhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 9 YTRTGRIDLANKIFDRLPVK-DSASWITLILGYGML----GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
+.|..+++-|++..++|..- +-.|-+.+-.++.+. +...+|.-+|++|-+. .+|+..+-+-...++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 34444555555555555532 445566555555544 5799999999998753 68999999999999999999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHcc
Q 046694 84 GKKFFDEMQARNVKPTETHYACMVYLLIKYN 114 (118)
Q Consensus 84 a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g 114 (118)
|..++++..++.-. ++.|...+|-+-.-.|
T Consensus 226 Ae~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 226 AESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 99999999665433 4555555555444333
No 93
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.0016 Score=44.20 Aligned_cols=112 Identities=17% Similarity=0.097 Sum_probs=66.3
Q ss_pred HHHHHhcCCHHHHHHHhhhCCC-C--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------------
Q 046694 6 LDFYTRTGRIDLANKIFDRLPV-K--DSASWITLILGYGMLGELDVAINLFEAMREDGVE-------------------- 62 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------------- 62 (118)
-.-|...|-+|+|+.+|..+.. + -...-..++..|-+..+|++|+++-.++...+-.
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 3456666777777777766653 2 2233444555555555555555555555443221
Q ss_pred -----------------ccHHHHHH-HHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 63 -----------------YYPVSHIG-VLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 63 -----------------p~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
|+-+--+. +-+.....|+.+.|.+.++...+.+...-..+...|..+|...|+.+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 11111111 22334455778888888888877777777778888888888888764
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.42 E-value=0.012 Score=40.10 Aligned_cols=88 Identities=16% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccH--HHHHHHHHHHhcCC
Q 046694 6 LDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGV-EYYP--VSHIGVLTACSLGG 79 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~~ 79 (118)
...+...|++++|...+++.. ..+...+..+-..+...|++++|...+++.....- .|+. ..|..+...+...|
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 346678899999999998775 33566788888899999999999999998876422 2332 34556788888999
Q ss_pred ChhhHHHHHHHHhh
Q 046694 80 LVEKGKKFFDEMQA 93 (118)
Q Consensus 80 ~~~~a~~~~~~m~~ 93 (118)
+.++|..++++...
T Consensus 201 ~~~~A~~~~~~~~~ 214 (355)
T cd05804 201 DYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999854
No 95
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.41 E-value=0.0031 Score=44.20 Aligned_cols=91 Identities=13% Similarity=-0.027 Sum_probs=61.8
Q ss_pred HHHHhcCCHHHHHHHhhhCC--CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 7 DFYTRTGRIDLANKIFDRLP--VKDS--ASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~--~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
.+..+.|+.++|...+++.. .|+. ..--.....+...|+++.|...++++.+.. +-+......+...+...|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 34556688888888887653 2332 233334666677788888888888887764 225566777788888888888
Q ss_pred hHHHHHHHHhhcCCCc
Q 046694 83 KGKKFFDEMQARNVKP 98 (118)
Q Consensus 83 ~a~~~~~~m~~~g~~~ 98 (118)
.+.+++..+.+.++.+
T Consensus 205 ~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888887776543
No 96
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.41 E-value=0.0068 Score=34.39 Aligned_cols=86 Identities=19% Similarity=0.121 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCC--ccHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGV--EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK--PTETHYACMV 107 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~t~~~li 107 (118)
++-.....+.+.|++++|.+.|+++.+..- +.....+..+...+.+.|+++.|.+.|+.+....-. .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 456677788889999999999999976521 112456777899999999999999999999764322 2245677777
Q ss_pred HHHHHccccc
Q 046694 108 YLLIKYNQKA 117 (118)
Q Consensus 108 ~~~~~~g~~~ 117 (118)
.++.+.|+.+
T Consensus 84 ~~~~~~~~~~ 93 (119)
T TIGR02795 84 MSLQELGDKE 93 (119)
T ss_pred HHHHHhCChH
Confidence 7777777654
No 97
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.38 E-value=0.00092 Score=34.34 Aligned_cols=55 Identities=20% Similarity=0.163 Sum_probs=46.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPV--K-DSASWITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
+-..+.+.|++++|...|++... | +...+..+-..+...|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34678899999999999998862 3 7778888889999999999999999999754
No 98
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0078 Score=42.81 Aligned_cols=114 Identities=13% Similarity=0.059 Sum_probs=84.6
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
=.|-++|.-.+...=|.-.|++-. +.|...|.+|-..|.+.++.++|.+.|++...-|- .+...+..+-+.+-+.+
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELK 480 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHH
Confidence 344555555566666666666443 45999999999999999999999999999987652 36688999999999999
Q ss_pred ChhhHHHHHHHHhhc----C-CCc-cHHHHHHHHHHHHHccccc
Q 046694 80 LVEKGKKFFDEMQAR----N-VKP-TETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~----g-~~~-~~~t~~~li~~~~~~g~~~ 117 (118)
+.++|...|++-.+. | +.| .....-.|-..+.+.++++
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 999999999887442 3 334 2344445666677776655
No 99
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.32 E-value=0.0064 Score=40.88 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=66.6
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLG 78 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (118)
|+.+-..|...|++++|...|++.. .| +..+|..+-..+...|++++|.+.|++..+. .|+..............
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~ 178 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESK 178 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 5677788899999999999998774 33 6778888888889999999999999998765 34332222333334456
Q ss_pred CChhhHHHHHHHHh
Q 046694 79 GLVEKGKKFFDEMQ 92 (118)
Q Consensus 79 ~~~~~a~~~~~~m~ 92 (118)
++.++|...+++..
T Consensus 179 ~~~~~A~~~l~~~~ 192 (296)
T PRK11189 179 LDPKQAKENLKQRY 192 (296)
T ss_pred CCHHHHHHHHHHHH
Confidence 78899988886653
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.31 E-value=0.011 Score=41.06 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
..+..+-.-|.+.+.+.+|...|+.-.+ ..|+.++|+-+-+++-+.|+.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChH
Confidence 5566677777788888888888885444 5778888888888888777653
No 101
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.26 E-value=0.018 Score=37.43 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=77.2
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHh
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVE-YYPVSHIGVLTACS 76 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~ 76 (118)
+|.++-..|.+.|..+.|.+-|++-. ..+..+-|..-.-+|..|.+++|...|++-...-.- -...+|..+.-+..
T Consensus 71 a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 71 AHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh
Confidence 35667778888899999988888543 345556666666677888999999999888766322 24567777777778
Q ss_pred cCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 77 LGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+.|+.+.|...|++-.+..-. ...+.-.+-+...+.|+
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGD 188 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhccc
Confidence 888888888888887654321 23333344444444443
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.24 E-value=0.0048 Score=31.91 Aligned_cols=64 Identities=20% Similarity=0.155 Sum_probs=49.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-ChhhHHHHHHHHhh
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG-LVEKGKKFFDEMQA 93 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~ 93 (118)
+..+|..+-..+...|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35567777788888888888888888887653 236777888888888888 68888888887654
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00056 Score=51.81 Aligned_cols=103 Identities=9% Similarity=0.075 Sum_probs=65.2
Q ss_pred CCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHH
Q 046694 13 GRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFD 89 (118)
Q Consensus 13 ~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (118)
+..++|+++|.+.. ..|...=|-+--.++..|++.+|..+|.+.++... -...+|..+-++|...|++..|+++|+
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 34566667766554 23555555566666677777777777777776543 244566677777777777777777777
Q ss_pred HH-hhcCCCccHHHHHHHHHHHHHcccc
Q 046694 90 EM-QARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 90 ~m-~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.- .+..-..+....+.|-+++.+.|++
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 75 3334444566666666766666654
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.21 E-value=0.0076 Score=43.54 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=89.1
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC--------CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCc-c
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP--------VK---DSASWITLILGYGMLGELDVAINLFEAMRED------GVEY-Y 64 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~--------~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~ 64 (118)
+.+...|+..+++++|..++++.. .. -..+|+.+-..|.+.|++++|.++|++.... +..+ .
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 456677888899999998887542 11 3468999999999999999999999998532 1223 3
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHH----hhcCC-Cc-cHHHHHHHHHHHHHcccccC
Q 046694 65 PVSHIGVLTACSLGGLVEKGKKFFDEM----QARNV-KP-TETHYACMVYLLIKYNQKAR 118 (118)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~g~-~~-~~~t~~~li~~~~~~g~~~~ 118 (118)
...++-+-..|.+.+..+.|.++|.+- ...|. .| ...+|..|...|.+-|++++
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence 567788888889999999999999885 33443 23 37889999999999998763
No 105
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.016 Score=35.48 Aligned_cols=82 Identities=10% Similarity=0.013 Sum_probs=63.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEY--YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l 106 (118)
....|..+...+...|++++|+..|++.....-.| ...++..+-..+.+.|+.++|.+.++...+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 35567788888888999999999999997653232 23578888899999999999999999987642 2335667777
Q ss_pred HHHHH
Q 046694 107 VYLLI 111 (118)
Q Consensus 107 i~~~~ 111 (118)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 77777
No 106
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.00057 Score=37.11 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 43 LGELDVAINLFEAMREDGV-EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
.|+++.|+.+|+++.+..- .|+...+-.+-.++.+.|++++|..+++. .+.+.. +....-.+-++|.+.|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHH
Confidence 5889999999999987633 23455566689999999999999999998 332222 2233335578888888765
No 107
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.18 E-value=0.0024 Score=33.99 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-Ccc-HHHHHHHHHHHhcCCChhhHHHHHHHHh
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMRED----GV-EYY-PVSHIGVLTACSLGGLVEKGKKFFDEMQ 92 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (118)
.+|+.+-..|...|++++|++.|++..+. |- .|+ ..+++.+-.++...|++++|.+++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888999999999999988542 21 233 6778888889999999999999988764
No 108
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.17 E-value=0.00075 Score=35.98 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=46.1
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---------CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---------VK-DSASWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
|+.+-..|...|++++|+..|++.. .+ -..+++.+-..|...|++++|++.+++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677888999999999999998654 12 26688899999999999999999999865
No 109
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.0074 Score=40.46 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=78.7
Q ss_pred HHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhH
Q 046694 9 YTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 84 (118)
..+.+++.+|+..|.+-. ..|.+-|..--.+|.+.|..+.|++-.+.-.. +.| -...|..|=.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 567899999999998664 45899999999999999999999887777654 344 468899999999999999999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHH
Q 046694 85 KKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 85 ~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
.+.|++-++ +.|+..+|=.=++
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 999998766 7788777654443
No 110
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=0.012 Score=43.20 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
-|...|.|.++++.|+-.|++-. ..+.+.-..+...+-+.|+.++|++++++.....-+ |+-.---....+-..++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcc
Confidence 34567788888888888888665 336666666777777888888888888887654322 33333334455556788
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.++|...++++++. ++-+...+-.+-+.|.+-|+.
T Consensus 573 ~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 573 YVEALQELEELKEL-VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccc
Confidence 88888888888773 233466666777777776654
No 111
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.11 E-value=0.019 Score=38.18 Aligned_cols=91 Identities=15% Similarity=0.039 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VKD----SASWITLILGYGMLGELDVAINLFEAMREDG--VEYYPVSHIGVLTAC 75 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~ 75 (118)
.-+..+.+.|++++|+..|+.+. -|+ ...+--+-..|...|++++|...|+.+.+.- -+.....+-.+...+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~ 227 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM 227 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence 34444566799999999998876 232 2356667788889999999999999997541 111234444456667
Q ss_pred hcCCChhhHHHHHHHHhhc
Q 046694 76 SLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~ 94 (118)
.+.|+.+.|.++|+.+.+.
T Consensus 228 ~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7899999999999999764
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.06 E-value=0.021 Score=36.75 Aligned_cols=92 Identities=14% Similarity=0.014 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CC-CH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccH-HHHHHHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VK-DS---ASWITLILGYGMLGELDVAINLFEAMREDGVE-YYP-VSHIGVLTAC 75 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~-~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~~ll~~~ 75 (118)
.+...+.+.|++++|...|++.. .| +. ..+..+-..+.+.|++++|...++++.+..-. |.. ..+..+-.++
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 34567788999999999998775 23 22 46677788999999999999999999765221 111 1333333344
Q ss_pred hcC--------CChhhHHHHHHHHhhcC
Q 046694 76 SLG--------GLVEKGKKFFDEMQARN 95 (118)
Q Consensus 76 ~~~--------~~~~~a~~~~~~m~~~g 95 (118)
.+. |+.+.|.+.++++.+..
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 433 78899999999997653
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.028 Score=36.99 Aligned_cols=87 Identities=7% Similarity=-0.088 Sum_probs=69.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
|...-+..++...+.|++..|...|.+...- -++|...|+.+--+|.+.|++++|..-|.+..+.- .-++...|+|--
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHH
Confidence 5455566888889999999999999998654 36799999999999999999999999999987743 235666677776
Q ss_pred HHHHccccc
Q 046694 109 LLIKYNQKA 117 (118)
Q Consensus 109 ~~~~~g~~~ 117 (118)
.|.=.|+++
T Consensus 177 s~~L~gd~~ 185 (257)
T COG5010 177 SLLLRGDLE 185 (257)
T ss_pred HHHHcCCHH
Confidence 666666653
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.05 E-value=0.047 Score=41.10 Aligned_cols=89 Identities=10% Similarity=0.075 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
.+...+.+.+++++|...+++.. .| +......+-.++.+.|++++|..+|++....+ +-+...+...-..+-+.|+
T Consensus 125 ~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~ 203 (694)
T PRK15179 125 LMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGA 203 (694)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 35678889999999999999886 33 66677777788999999999999999998732 2347888888999999999
Q ss_pred hhhHHHHHHHHhh
Q 046694 81 VEKGKKFFDEMQA 93 (118)
Q Consensus 81 ~~~a~~~~~~m~~ 93 (118)
.+.|...|+...+
T Consensus 204 ~~~A~~~~~~a~~ 216 (694)
T PRK15179 204 LWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999855
No 115
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.99 E-value=0.0076 Score=43.52 Aligned_cols=91 Identities=14% Similarity=0.209 Sum_probs=73.1
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-c-c
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVK-----------DSASWITLILGYGMLGELDVAINLFEAMRE----DGVE-Y-Y 64 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~-p-~ 64 (118)
++.|-..|-+.|++++|+.+|++..+. .....+.+-..|.+.+..++|.++|.+-.. -|.. | .
T Consensus 370 ~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 567888999999999999999876411 234677788888999999999999888643 3332 3 3
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHh
Q 046694 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQ 92 (118)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (118)
..+|..|...|...|+++.|.++.+...
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5889999999999999999999998873
No 116
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.98 E-value=0.034 Score=34.26 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=66.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY--PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l 106 (118)
....|..+-..+...|++++|...|++..+..-.++ ...+..+-..+.+.|+++.|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 556778888889999999999999999976543332 4678888899999999999999999987743 2245556666
Q ss_pred HHHHHHccc
Q 046694 107 VYLLIKYNQ 115 (118)
Q Consensus 107 i~~~~~~g~ 115 (118)
-.++...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 667766654
No 117
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.97 E-value=0.002 Score=33.39 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=49.2
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLG-ELDVAINLFEAMRE 58 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 58 (118)
|..+-..+.+.|++++|+..|++.. ..+...|..+-.++...| ++++|++.|++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5667788899999999999999765 447788999999999999 79999999998765
No 118
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.96 E-value=0.039 Score=40.15 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
-+-+.|.+.|++++|..+.++-. +| .+-.|..--+.+-+.|++.+|.+.+++.+.... -|...=+-....+.++|+
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGR 277 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCC
Confidence 34567778999999999999664 45 456788888999999999999999999887542 366666777888889999
Q ss_pred hhhHHHHHHHHhhcCCCc
Q 046694 81 VEKGKKFFDEMQARNVKP 98 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~ 98 (118)
+++|.+++..+.+.+..|
T Consensus 278 ~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 278 IEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHhhcCCCCCc
Confidence 999999999997777544
No 119
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.93 E-value=0.03 Score=37.51 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=66.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH-----hhcCCCccHHHHH
Q 046694 30 SASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-----QARNVKPTETHYA 104 (118)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m-----~~~g~~~~~~t~~ 104 (118)
..++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+ .+.|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3467778888888899999999999987652 458899999999999999999999999887 4588999988888
Q ss_pred HHHHHH
Q 046694 105 CMVYLL 110 (118)
Q Consensus 105 ~li~~~ 110 (118)
...+..
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 777764
No 120
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.90 E-value=0.012 Score=40.14 Aligned_cols=77 Identities=8% Similarity=-0.036 Sum_probs=61.9
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
|-..|.++++.++|++..++... ...+.-|-.++..|.+.|...+|.....++ ++..-+..|.+.|++
T Consensus 211 w~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~ 278 (319)
T PF04840_consen 211 WWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDY 278 (319)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCH
Confidence 45678999999999999998765 345688999999999999999999998882 235567778888888
Q ss_pred hhHHHHHHH
Q 046694 82 EKGKKFFDE 90 (118)
Q Consensus 82 ~~a~~~~~~ 90 (118)
.+|.+.-.+
T Consensus 279 ~~A~~~A~~ 287 (319)
T PF04840_consen 279 KEAAQEAFK 287 (319)
T ss_pred HHHHHHHHH
Confidence 888765433
No 121
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.007 Score=46.23 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=83.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhcCCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPV---KDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~ 80 (118)
+-.+++..|++++|..+|.+..+ .+..+|-.+-+.|...|++..|+++|+...+. .-+-+..+...|-+++-++|.
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 34567889999999999998873 35678999999999999999999999998654 434578888999999999999
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHHHH
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
+.+|.+..-........-...-+|..+
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 999999888876655554555566443
No 122
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.023 Score=38.80 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=61.7
Q ss_pred hcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHH
Q 046694 11 RTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKF 87 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 87 (118)
...++++|..++.+-. .| .+..-..+-+.....|+++.|.+.++...+.+...-..+-..+..+|.+.|+.++....
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455666666665443 12 22233334467777899999999999999887777778888999999999999999988
Q ss_pred HHHHhhcC
Q 046694 88 FDEMQARN 95 (118)
Q Consensus 88 ~~~m~~~g 95 (118)
+..+.+..
T Consensus 272 L~~~~~~~ 279 (389)
T COG2956 272 LRRAMETN 279 (389)
T ss_pred HHHHHHcc
Confidence 88875533
No 123
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.82 E-value=0.012 Score=30.74 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=29.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 39 GYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
.|.+.+++++|.++++++...+ +.+...+...-..+.+.|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455556666666666655442 12444455555555566666666666666554
No 124
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.054 Score=38.89 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=63.9
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh-cCCChh
Q 046694 7 DFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS-LGGLVE 82 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~ 82 (118)
..|-+.|+-.+|.+.+-+.- ..|+.+..=+-.-|....-+++++..|++. .-+.|+.+-|-.|+..|. +.|+++
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHH
Confidence 34445555555544432221 224444444444455555566777777653 336788888887766554 567888
Q ss_pred hHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 83 KGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+|.++|+...+ .++-|......|++.+...|-
T Consensus 678 ka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 88888887744 366677777777777776653
No 125
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.79 E-value=0.069 Score=36.37 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=70.0
Q ss_pred cCCHHHHHHHhhhCCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHH
Q 046694 12 TGRIDLANKIFDRLPV--K-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (118)
.+..+.+.+.++.... | .......+-..+...|++++|.+.+++..+.. +.+...+..+-..+...|++++|..++
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555543221 1 22333344467778899999999999998763 335667778888899999999999999
Q ss_pred HHHhhcCC-CccH--HHHHHHHHHHHHccccc
Q 046694 89 DEMQARNV-KPTE--THYACMVYLLIKYNQKA 117 (118)
Q Consensus 89 ~~m~~~g~-~~~~--~t~~~li~~~~~~g~~~ 117 (118)
++..+..- .|+. ..|..+...+...|+.+
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 98865432 2332 34556777888888765
No 126
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.78 E-value=0.024 Score=39.45 Aligned_cols=69 Identities=16% Similarity=-0.076 Sum_probs=59.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
+...+.++-..|.+.+.|.+|...|+.-. ...|+..+|+-+-+++.+.|+.+.|.+++++-...-.+|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 66788999999999999999999999544 4589999999999999999999999999998765444444
No 127
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.76 E-value=0.02 Score=29.83 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=47.6
Q ss_pred HHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 046694 6 LDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDG 60 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 60 (118)
-..|.+.+++++|.++++.+. ..+...|...-..+.+.|++++|.+.|++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 357889999999999999886 3477788888899999999999999999998653
No 128
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.72 E-value=0.044 Score=41.75 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPV----KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLG 78 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 78 (118)
-+..+|...|++.+|..+|..+.. .+...|-.+-..|-..|..++|...|...... .| +...=..+-..+-+.
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhc
Confidence 355677888888888888887752 26677888888888888888888888887754 34 334444555666778
Q ss_pred CChhhHHHHHHHHh--------hcCCCccHHHHHHHHHHHHHccccc
Q 046694 79 GLVEKGKKFFDEMQ--------ARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 79 ~~~~~a~~~~~~m~--------~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
|+.|+|.+.++.|. ..++.|+....-...+.+.+.|+.+
T Consensus 497 g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 497 GNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred CCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 88888888888852 2345666666666666666666554
No 129
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.70 E-value=0.019 Score=38.38 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=64.2
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMRE-----DGVEYYPVSHIGVLT 73 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll~ 73 (118)
+..++..+...|+++.+...++++. .| +-..|-.+|.+|.+.|+...|++.|+++.+ .|+.|...+......
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 4567888889999999999998876 23 888999999999999999999999999965 589999988887777
Q ss_pred HHh
Q 046694 74 ACS 76 (118)
Q Consensus 74 ~~~ 76 (118)
...
T Consensus 236 ~~~ 238 (280)
T COG3629 236 ILR 238 (280)
T ss_pred Hhc
Confidence 744
No 130
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.69 E-value=0.057 Score=38.46 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=42.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP----VSHIGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
+...|+.+-.+|.+.|++++|+..|++-.+. .|+. ..|..+-.+|.+.|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5556677777777777777777777775543 3442 34677777777777777777777776553
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.66 E-value=0.05 Score=38.84 Aligned_cols=87 Identities=11% Similarity=-0.076 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VKD-SASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
.....+.+.++.++|.+-++++. .|+ ...+-.+-.++.+.|++.+|.+++++..... +-|...|..+-.+|...|+
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc
Confidence 45677889999999999999886 454 5566777889999999999999999987663 4589999999999999888
Q ss_pred hhhHHHHHHHH
Q 046694 81 VEKGKKFFDEM 91 (118)
Q Consensus 81 ~~~a~~~~~~m 91 (118)
..++.....+.
T Consensus 424 ~~~a~~A~AE~ 434 (484)
T COG4783 424 RAEALLARAEG 434 (484)
T ss_pred hHHHHHHHHHH
Confidence 87777665554
No 132
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=96.63 E-value=0.039 Score=31.37 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 046694 45 ELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110 (118)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~ 110 (118)
+.-+..+-++.+-...+.|++.+..+.|++|-+.+++..|.++++-.+.+ +.+....|..+++-+
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 45677888888888889999999999999999999999999999999443 233333788777654
No 133
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.59 E-value=0.083 Score=35.31 Aligned_cols=111 Identities=11% Similarity=0.172 Sum_probs=67.7
Q ss_pred HHHHHHhc-CCHHHHHHHhhhCC-------CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CccHH-HH
Q 046694 5 RLDFYTRT-GRIDLANKIFDRLP-------VK--DSASWITLILGYGMLGELDVAINLFEAMREDGV-----EYYPV-SH 68 (118)
Q Consensus 5 ll~~~~~~-~~~~~a~~~~~~m~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~-~~ 68 (118)
+-..|-+. |++++|++.|++-. .+ -...+..+...+.+.|++++|.++|++....-. +++.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445555 67777777776443 11 234566777889999999999999999865432 23332 23
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhhc--CCCcc--HHHHHHHHHHHHHcccc
Q 046694 69 IGVLTACSLGGLVEKGKKFFDEMQAR--NVKPT--ETHYACMVYLLIKYNQK 116 (118)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~--~~t~~~li~~~~~~g~~ 116 (118)
...+=++...|++-.|.+.+++.... ++..+ -.....||.+| +.|+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~ 250 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDV 250 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCH
Confidence 33344666779999999999998543 44433 55666777777 44443
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.58 E-value=0.047 Score=38.84 Aligned_cols=58 Identities=14% Similarity=-0.019 Sum_probs=50.0
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC--CCC-H---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP--VKD-S---ASWITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
|+.+-.+|.+.|++++|+..|++-. .|+ . .+|..+-.+|.+.|+.++|+..+++..+.
T Consensus 78 ~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 78 AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5677889999999999999998753 454 3 46999999999999999999999999875
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.51 E-value=0.06 Score=37.88 Aligned_cols=86 Identities=9% Similarity=-0.106 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPV---KDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGG 79 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 79 (118)
.|...+...++-.+|.++.++... .+......-...+.+.++.+.|+++.++..+. .| +..+|..+..+|.+.|
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcC
Confidence 356667677888899888887653 25555555567788999999999999999875 56 5679999999999999
Q ss_pred ChhhHHHHHHHH
Q 046694 80 LVEKGKKFFDEM 91 (118)
Q Consensus 80 ~~~~a~~~~~~m 91 (118)
+++.|...+..+
T Consensus 283 d~e~ALlaLNs~ 294 (395)
T PF09295_consen 283 DFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHhcC
Confidence 999999888876
No 136
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.053 Score=39.50 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=75.4
Q ss_pred cCCHHHHHHHhhhCCCC----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 12 TGRIDLANKIFDRLPVK----------DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
.+.+.+|...|+.-..+ =..+++.+-.+|.+.+..++|+..|++-.... +-+..++.++--.|...|++
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcCh
Confidence 35566666666543310 22457888899999999999999999987652 34889999999999999999
Q ss_pred hhHHHHHHHHhhcCCCccHHHHHHHHHHHHHc
Q 046694 82 EKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113 (118)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~ 113 (118)
+.|...|.+-.. +.|+..+...++..+...
T Consensus 506 d~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 506 DKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 999999997654 788888888887766543
No 137
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.45 E-value=0.17 Score=37.02 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=83.2
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC----CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP----VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY-PVSHIGVLTAC 75 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~ 75 (118)
|..+|..--|..-+..|+.+|.+.. .+ ++..++++|.-|| .++.+-|.++|+-=... -+| +.-....++-+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFL 445 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHH
Confidence 5566777777788889999998776 22 7778888888765 57788899998764332 233 33445567777
Q ss_pred hcCCChhhHHHHHHHHhhcCCCcc--HHHHHHHHHHHHHcccc
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPT--ETHYACMVYLLIKYNQK 116 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~~li~~~~~~g~~ 116 (118)
.+.++=..+..+|++....++.|| ...|..+|+.=+.-|++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 888888899999999988777665 57899988887777765
No 138
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.018 Score=41.82 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=64.1
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 77 (118)
+++.|-++|-+.+++++|+..|++-. ..|+.+|.++--.|...|.++.|.+.|.+-. .+.|+-.+-..+|+.+..
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 46778899999999999999999654 5699999999999999999999999999855 468888888888876554
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.39 E-value=0.066 Score=37.09 Aligned_cols=78 Identities=8% Similarity=-0.078 Sum_probs=63.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 38 LGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
..+...|++++|++.|++..+.. +-+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34556799999999999998753 2367788888899999999999999999997753 235677888888888888765
No 140
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.37 E-value=0.082 Score=42.46 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=67.9
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY---PVSHIGVLTAC 75 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~ 75 (118)
|..|...|.+.+++++|.++++.|. ......|......+.+.++-+.|..++++..+. -|. .....-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 4567888899999999999999886 346678888888888888878887777776543 222 11111122222
Q ss_pred hcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcc
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYN 114 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g 114 (118)
-+.|+.+.+..+|+..... .+--...|+..|+.=.+.|
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccC
Confidence 3555666666666555432 2223455555555544444
No 141
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.026 Score=42.25 Aligned_cols=82 Identities=12% Similarity=0.245 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
--+.-+...|+..+|.++-.+.+-||...|-.-+.+++..++|++.+++-+.++ ++.-|..++.+|.+.|+.++
T Consensus 689 dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 345667788999999999999999999999999999999999999888877755 36678889999999999999
Q ss_pred HHHHHHHH
Q 046694 84 GKKFFDEM 91 (118)
Q Consensus 84 a~~~~~~m 91 (118)
|.+++-+.
T Consensus 763 A~KYiprv 770 (829)
T KOG2280|consen 763 AKKYIPRV 770 (829)
T ss_pred Hhhhhhcc
Confidence 99988766
No 142
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.13 E-value=0.1 Score=38.04 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=82.8
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhc
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY--PVSHIGVLTACSL 77 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~ 77 (118)
+.|--.|.-.|.+++|++.|+... ..|...||-+-..++...+-++|+..|.+..+- +|+ .+=||.-| +|..
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgI-S~mN 510 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGI-SCMN 510 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhh-hhhh
Confidence 445567778899999999998664 348999999999999999999999999998875 565 34455444 5688
Q ss_pred CCChhhHHHHHHHH---hhc------CCCccHHHHHHHHHHHHHcccc
Q 046694 78 GGLVEKGKKFFDEM---QAR------NVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 78 ~~~~~~a~~~~~~m---~~~------g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.|.+++|.+.|=.. .+. +..++...|..|=.+++-.++.
T Consensus 511 lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 89999998887664 222 1233556888777666655543
No 143
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.13 E-value=0.069 Score=32.21 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=47.8
Q ss_pred HHhcCCHHHHHHHhhhCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 9 YTRTGRIDLANKIFDRLPVK------DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
-.+.|++++|++.|+.+..+ ....--.++.+|.+.+++++|...+++..+..-.-..+.|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34678999999999988632 445566788999999999999999999987532222344444444444
No 144
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.062 Score=37.47 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCC---CHhhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCccHHH-HHHHHHHHhcCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPVK---DSASWITLI-LGYGMLGELDVAINLFEAMREDGVEYYPVS-HIGVLTACSLGG 79 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~ 79 (118)
+.++++..|++.+|+++|-++..| |..+|-+++ +.|...+.++.|.+++-.+.. +.+..+ .-.+.+.|-+++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHH
Confidence 457888889999999999887754 667777666 788888999999888766542 222222 233456788888
Q ss_pred ChhhHHHHHHHHhhc
Q 046694 80 LVEKGKKFFDEMQAR 94 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~ 94 (118)
.+=-|-+.|+++...
T Consensus 476 eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 476 EFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHhhhHHHcc
Confidence 888888888888664
No 145
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.07 E-value=0.28 Score=35.82 Aligned_cols=113 Identities=10% Similarity=0.116 Sum_probs=81.1
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC------------------CCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP------------------VKDSA--SWITLILGYGMLGELDVAINLFEAMREDGV 61 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~------------------~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 61 (118)
|+.|-..|....+.+-...++.+.. .|... ++.-+-..|-..|+.++|++.+++..++
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 3445555555555555555554431 12332 3345567788889999999999998887
Q ss_pred Ccc-HHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 62 EYY-PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 62 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
.|+ +.-|..--+.+-+.|++++|.+..+........ |...=+.....+.|+|+++
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHH
Confidence 465 678888899999999999999999998765433 6777777778888888765
No 146
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.03 E-value=0.28 Score=35.47 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=50.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
|....+-+-..|-+.|+-..|.+++-+--+ -++-+..+.-.+-..|....-+++++.+|++.. -++|+.+-|.-||-
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIA 667 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHH
Confidence 444555555555555555555554443221 133355555556666666666667777776653 37899999998876
Q ss_pred HH-HHcccc
Q 046694 109 LL-IKYNQK 116 (118)
Q Consensus 109 ~~-~~~g~~ 116 (118)
.| .++|..
T Consensus 668 sc~rrsgny 676 (840)
T KOG2003|consen 668 SCFRRSGNY 676 (840)
T ss_pred HHHHhcccH
Confidence 55 455654
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.03 E-value=0.082 Score=35.38 Aligned_cols=82 Identities=20% Similarity=0.112 Sum_probs=66.1
Q ss_pred cCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhcCCChhhHH
Q 046694 12 TGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY---PVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~ 85 (118)
.++.+.|.++|+... ..+...|..-++-+.+.|+.+.|-.+|++.... +.++ ...|...++-=.+.|+++.+.
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~ 127 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVR 127 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467777999999775 458888999999999999999999999999765 3332 368999999999999999999
Q ss_pred HHHHHHhhc
Q 046694 86 KFFDEMQAR 94 (118)
Q Consensus 86 ~~~~~m~~~ 94 (118)
++.+++.+.
T Consensus 128 ~v~~R~~~~ 136 (280)
T PF05843_consen 128 KVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=96.02 E-value=0.08 Score=32.72 Aligned_cols=85 Identities=15% Similarity=0.056 Sum_probs=65.2
Q ss_pred HHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHH
Q 046694 9 YTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
+...|++++|+.+|.-+- .+ |..-|..|-..+-..+.+++|...|...-.... -|+..+--.-.++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 456899999999998654 33 555556666666667999999999998865543 35555666778888999999999
Q ss_pred HHHHHHhhc
Q 046694 86 KFFDEMQAR 94 (118)
Q Consensus 86 ~~~~~m~~~ 94 (118)
..|+...+.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 999998773
No 149
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.01 E-value=0.0073 Score=27.38 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 046694 33 WITLILGYGMLGELDVAINLFEAM 56 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m 56 (118)
|+.|-..|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555566666666666666553
No 150
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.01 E-value=0.032 Score=42.35 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=50.6
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
|..+.+-|+..|+++.|+++|-+- ..++..|..|.++|.|+.|.++-.+.. |-+.....|-+-..-+-++|.+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcch
Confidence 344556677778888888887543 246667788888888888888776643 3344555666655555555555
Q ss_pred hhHHHH
Q 046694 82 EKGKKF 87 (118)
Q Consensus 82 ~~a~~~ 87 (118)
.+|+++
T Consensus 841 ~eaeql 846 (1636)
T KOG3616|consen 841 AEAEQL 846 (1636)
T ss_pred hhhhhe
Confidence 555544
No 151
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.99 E-value=0.33 Score=34.02 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=69.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCC-------CHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPVK-------DSASWITLILGYGM---LGELDVAINLFEAMREDGVEYYPVSHIGVLTA 74 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 74 (118)
|+-+|-...+++..+++.+.++.. ....--...-++.+ .|+.++|++++..+....-.++..+|..+-+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 445688889999999999999743 11111233344555 78999999999997666666788888877666
Q ss_pred Hhc---------CCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcc
Q 046694 75 CSL---------GGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYN 114 (118)
Q Consensus 75 ~~~---------~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g 114 (118)
|-. ...+++|...|.+--+ +.||.++--++...+.-.|
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcC
Confidence 542 2346677777776533 2355554444444444444
No 152
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.92 E-value=0.13 Score=28.96 Aligned_cols=64 Identities=8% Similarity=0.009 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHh-hcCCCccHHHHHHHHHHH
Q 046694 45 ELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQ-ARNVKPTETHYACMVYLL 110 (118)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~t~~~li~~~ 110 (118)
+.-++.+-++.+-...+.|++.+..+.|++|-+.+++..|.++++-.+ +.|- +...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 677888888888888899999999999999999999999999999885 4332 455777776643
No 153
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.83 E-value=0.18 Score=31.55 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=57.8
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVK------DSASWITLILGYGMLGELDVAINLFEAMRED---GVEYYPVSHIGVL 72 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll 72 (118)
+..+...|++.|+.+.|.+.|.++... -+..+-.+|......+++..+.....+.... |-.++...--...
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 345677888899999999999888632 3346667788888888888888888877543 2222222211222
Q ss_pred HHHh--cCCChhhHHHHHHHH
Q 046694 73 TACS--LGGLVEKGKKFFDEM 91 (118)
Q Consensus 73 ~~~~--~~~~~~~a~~~~~~m 91 (118)
.++. ..+++..|-+.|-+.
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHhchHHHHHHHHHcc
Confidence 2222 456777777776665
No 154
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=95.82 E-value=0.2 Score=30.31 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---C--CccHHHHHHHHHHHhcCCC-hhhHHHHHHHHhhcCCCccHHHHHHH
Q 046694 33 WITLILGYGMLGELDVAINLFEAMREDG---V--EYYPVSHIGVLTACSLGGL-VEKGKKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~~---~--~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~t~~~l 106 (118)
.|+++.-...-+.+.-.+.+++.+..-. + ..+..+|.+++++.++..- --.+..+|..|++.+.+++..-|-.|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4444444444444444444444442110 0 1233455555555544443 22344445555444455555555555
Q ss_pred HHHHH
Q 046694 107 VYLLI 111 (118)
Q Consensus 107 i~~~~ 111 (118)
|.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 55443
No 155
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.11 Score=37.59 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHhhhC-C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHH
Q 046694 11 RTGRIDLANKIFDRL-P-VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (118)
..|++..|.++|+.= . +|+...|++.|+-=.+.+.++.|-.++++..- +.|++.+|--..+-=.++|++..+..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 458889999999753 3 89999999999999999999999999999875 4699999999888888999999999999
Q ss_pred HHHhh
Q 046694 89 DEMQA 93 (118)
Q Consensus 89 ~~m~~ 93 (118)
+...+
T Consensus 231 erAie 235 (677)
T KOG1915|consen 231 ERAIE 235 (677)
T ss_pred HHHHH
Confidence 88744
No 156
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.23 Score=39.21 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=62.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
....|+.+-++=.+.|.+.+|.+-|-+. -|+..|.-+++...+.|.+++-.+++....+..-+|... +.||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3456888888888888888887766542 278889999999999999999999888887776666655 46888
Q ss_pred HHHHccccc
Q 046694 109 LLIKYNQKA 117 (118)
Q Consensus 109 ~~~~~g~~~ 117 (118)
+|++.+++.
T Consensus 1175 AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1175 AYAKTNRLT 1183 (1666)
T ss_pred HHHHhchHH
Confidence 888888764
No 157
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.74 E-value=0.22 Score=30.00 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=58.0
Q ss_pred hcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHH
Q 046694 11 RTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDE 90 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (118)
.+|++.+....+-.+.. +..-.+..+....+.|.-+...++.+++... -+|++...-.+-.+|.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555555555544432 3344677788889999999999999998753 367888888999999999999999999999
Q ss_pred HhhcCCC
Q 046694 91 MQARNVK 97 (118)
Q Consensus 91 m~~~g~~ 97 (118)
.-+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 9888864
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.31 Score=34.21 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=74.4
Q ss_pred HHHHhcCCHHHHHHHhhhCC------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 046694 7 DFYTRTGRIDLANKIFDRLP------------------VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH 68 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 68 (118)
+.|.+.|++..|..-|++.. ..-...+..+.-.+.+.+++.+|+..-++....+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 36788899999988877632 1145678889999999999999999999987653 3455555
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 69 IGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
-.=-.++...|+++.|+..|.++++ +.|+......=|.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELI 332 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 5556788899999999999999988 5666555544333
No 159
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.36 Score=32.32 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=64.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-C
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG-L 80 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~ 80 (118)
.|....-.+++.+|.-+|++|. .|+..+-|-...++...|++++|..++++.....-+ ++.+...++-.--..| +
T Consensus 179 wv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 179 WVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 3444444567999999999997 467777788888888999999999999999876433 4555555554444555 5
Q ss_pred hhhHHHHHHHHhhc
Q 046694 81 VEKGKKFFDEMQAR 94 (118)
Q Consensus 81 ~~~a~~~~~~m~~~ 94 (118)
.+...+...++...
T Consensus 258 ~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 258 AEVTERNLSQLKLS 271 (299)
T ss_pred hHHHHHHHHHHHhc
Confidence 56667777777553
No 160
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.69 E-value=0.31 Score=39.45 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--------VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 75 (118)
..|......+++++|++++++.. .--...|.++++.-...|.-+...++|++..+. --...+|..|...|
T Consensus 1463 ~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1463 RYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 44556666777777777776542 113345666666666666666666777666543 11345666677777
Q ss_pred hcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcc
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYN 114 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g 114 (118)
.+.+..++|.++++.|.+. +.-....|.-..+.+.+..
T Consensus 1541 ~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhccc
Confidence 7777777777777777332 2245556666666555543
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.59 E-value=0.22 Score=29.13 Aligned_cols=100 Identities=19% Similarity=0.099 Sum_probs=69.0
Q ss_pred HHHHhcCCHHHHHHHhhhCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---H-HHHHHHHHHHh
Q 046694 7 DFYTRTGRIDLANKIFDRLPVK------DSASWITLILGYGMLGELDVAINLFEAMREDGVEYY---P-VSHIGVLTACS 76 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~-~~~~~ll~~~~ 76 (118)
.++-..|+.++|+.+|++-... -...+-.+-..+...|++++|+.+|++..... |+ . .....+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 3556789999999999866421 23356667788889999999999999987652 33 1 11111223667
Q ss_pred cCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 046694 77 LGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112 (118)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~ 112 (118)
..|+.++|...+-.... ++..-|.-=|..|.+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 88999999988876544 344577766666653
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.51 E-value=0.49 Score=34.63 Aligned_cols=65 Identities=9% Similarity=-0.060 Sum_probs=55.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcC
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (118)
+...|.++--.....|++++|...+++..+.+ |+...|..+-..+...|+.++|...+++.....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44667777555666799999999999998865 788999999999999999999999999986543
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.51 E-value=0.24 Score=28.99 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=47.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 38 LGYGMLGELDVAINLFEAMREDGVEYY--PVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
.++-..|+.++|+.+|++-...|.... ...+-.+-+.+...|++++|..++++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345567999999999999999887654 456667788888999999999999998654
No 164
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.06 Score=36.72 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=60.4
Q ss_pred cCCHHHHHHHhhhCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhcCCChhhHHHHHH
Q 046694 12 TGRIDLANKIFDRLP-VKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVSHIGVLTACSLGGLVEKGKKFFD 89 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (118)
.+++..+..+.++.+ +.+..+-+..-...-+.|+.+.|++-|+...+- |.. +...||..+-.|.+ |+.+.|.++..
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy~~-~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHYSS-RQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHhh-hhHHHHHHHHH
Confidence 344555555555555 234444444555556789999999999998765 554 56789988877655 89999999999
Q ss_pred HHhhcCCC
Q 046694 90 EMQARNVK 97 (118)
Q Consensus 90 ~m~~~g~~ 97 (118)
++.++|++
T Consensus 203 EIieRG~r 210 (459)
T KOG4340|consen 203 EIIERGIR 210 (459)
T ss_pred HHHHhhhh
Confidence 99998874
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.29 E-value=0.41 Score=37.27 Aligned_cols=109 Identities=11% Similarity=-0.028 Sum_probs=61.7
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC--CCCH-hhHHHHHHHHHhcCCHHHHHHH------------------HHHHHHcC
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP--VKDS-ASWITLILGYGMLGELDVAINL------------------FEAMREDG 60 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~-~~~~~li~~~~~~~~~~~a~~~------------------~~~m~~~~ 60 (118)
|-.|+..|...+++++|.++.+.-. .|+. ..|-.+-..+.+.++.+++..+ .+.|...
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~- 112 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLY- 112 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhh-
Confidence 4568888889999999998877443 2211 1111111133334433333333 2222221
Q ss_pred CCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHc
Q 046694 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113 (118)
Q Consensus 61 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~ 113 (118)
.-+...+..+-.+|-+.|+.+++..++++..+.. +-|+...|.+-..|+..
T Consensus 113 -~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 113 -GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 1122455556666667788888888888877765 44677777777666655
No 166
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.07 E-value=0.64 Score=31.42 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=66.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhcCCChhhHHHHHHH-----HhhcCCCccH
Q 046694 27 VKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVSHIGVLTACSLGGLVEKGKKFFDE-----MQARNVKPTE 100 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~ 100 (118)
.++..+-..+|..+++.++|.+..++++..... +..-|...|..+|+...+.|+.....++.++ +.+.|+..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 446667778888888888888888888887655 5556888888888888888888888887776 3666777777
Q ss_pred HHHHHHHHHHHHc
Q 046694 101 THYACMVYLLIKY 113 (118)
Q Consensus 101 ~t~~~li~~~~~~ 113 (118)
..-..|-+.+.+.
T Consensus 279 ~L~~~L~~LF~~v 291 (292)
T PF13929_consen 279 ELRSQLSELFKKV 291 (292)
T ss_pred HHHHHHHHHHHhc
Confidence 7777776666543
No 167
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.06 E-value=0.096 Score=23.56 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHH
Q 046694 68 HIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
++.+-+.|.+.|++++|..+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666653
No 168
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=0.2 Score=36.31 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=63.8
Q ss_pred hcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHH
Q 046694 11 RTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKF 87 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 87 (118)
-.+++++|..=|++-. ..++..|-.+-.+.-+.+.+++++..|++.+.. ++-.+..|+-.-..+...++++.|.+.
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 3456677777777655 236677777777777888999999999998765 555678899999999999999999999
Q ss_pred HHHHhh
Q 046694 88 FDEMQA 93 (118)
Q Consensus 88 ~~~m~~ 93 (118)
|+...+
T Consensus 485 YD~ai~ 490 (606)
T KOG0547|consen 485 YDKAIE 490 (606)
T ss_pred HHHHHh
Confidence 988755
No 169
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.88 E-value=0.53 Score=29.43 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=54.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEY--YPVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
-...+..+..-|++.|+.++|++.|.++++....| -...+..+|+...-.+++..+.....+...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34578899999999999999999999999876555 356788899999999999999988887733
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.84 E-value=1.1 Score=32.89 Aligned_cols=102 Identities=6% Similarity=-0.016 Sum_probs=66.5
Q ss_pred CHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhcCCCh
Q 046694 14 RIDLANKIFDRLP--VK-DSASWITLILGYGML--------GELDVAINLFEAMRED-GVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 14 ~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
..++|..+|++.. .| ....|..+..++... .++..+.+...+.... ....+...|.++--.....|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 3779999999876 44 333444433333222 1233444444443332 2334557777775555667999
Q ss_pred hhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 82 EKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
++|...+++..+.+ |+...|..+-.++...|+.+
T Consensus 437 ~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 437 DEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHH
Confidence 99999999998866 68889999999999888865
No 171
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.82 E-value=0.21 Score=33.92 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=62.3
Q ss_pred CHHHHHHHhhhCC-------CCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCC-C--
Q 046694 14 RIDLANKIFDRLP-------VKDSASWITLILGYGMLG--ELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGG-L-- 80 (118)
Q Consensus 14 ~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~-~-- 80 (118)
...+|..+|+.|+ .++-.++..++..-...- ..+.+..+|+.+.+.|+.. |..-+.+-+-++.... .
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 4568899999997 346667777776522211 2678889999999988876 3434444444444322 2
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHH
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYAC 105 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~ 105 (118)
+.++..+++.+.+.|+++....|..
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccH
Confidence 4578899999999999877766653
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.73 E-value=0.77 Score=30.61 Aligned_cols=86 Identities=10% Similarity=-0.001 Sum_probs=60.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHhcCCChhhHHHHHHHHhhcCC-C-ccHHHH
Q 046694 30 SASWITLILGYGMLGELDVAINLFEAMREDGVEYY----PVSHIGVLTACSLGGLVEKGKKFFDEMQARNV-K-PTETHY 103 (118)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~-~~~~t~ 103 (118)
...|...+....+.|++++|...|+.+.+.- |+ ...+-.+-..|...|+++.|...|+.+.+.-- . .....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3456676766677899999999999998752 33 34667788888999999999999999965321 1 123444
Q ss_pred HHHHHHHHHccccc
Q 046694 104 ACMVYLLIKYNQKA 117 (118)
Q Consensus 104 ~~li~~~~~~g~~~ 117 (118)
-.+..++.+.|+.+
T Consensus 221 ~klg~~~~~~g~~~ 234 (263)
T PRK10803 221 FKVGVIMQDKGDTA 234 (263)
T ss_pred HHHHHHHHHcCCHH
Confidence 44555666666543
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.73 E-value=0.71 Score=30.87 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=54.8
Q ss_pred CCHHHHHHHhhhCC-------CC--CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHH----cCCCc-cHHHHHHHHHHHhc
Q 046694 13 GRIDLANKIFDRLP-------VK--DSASWITLILGYGML-GELDVAINLFEAMRE----DGVEY-YPVSHIGVLTACSL 77 (118)
Q Consensus 13 ~~~~~a~~~~~~m~-------~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~ 77 (118)
.++++|+..+++.. .+ -...+..+-..|-.. |++++|++.|++-.+ .|-+- -...+..+...+.+
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 36666655554332 23 233666777778887 899999999998843 34211 24566778888999
Q ss_pred CCChhhHHHHHHHHhhcC
Q 046694 78 GGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g 95 (118)
.|++++|.++|++....-
T Consensus 168 l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp TT-HHHHHHHHHHHHHTC
T ss_pred hCCHHHHHHHHHHHHHHh
Confidence 999999999999986543
No 174
>PLN02789 farnesyltranstransferase
Probab=94.70 E-value=0.9 Score=31.20 Aligned_cols=98 Identities=7% Similarity=0.047 Sum_probs=53.9
Q ss_pred CHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHH
Q 046694 14 RIDLANKIFDRLP---VKDSASWITLILGYGMLGE--LDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88 (118)
Q Consensus 14 ~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (118)
++++++.+++++. ..+..+|+..--.+.+.|. .++++.+++++.+..- -|...|+-.--.+.+.|+++++.+.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3556666665543 2244445543333334443 2455666666654321 15555665556666677788888888
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHc
Q 046694 89 DEMQARNVKPTETHYACMVYLLIKY 113 (118)
Q Consensus 89 ~~m~~~g~~~~~~t~~~li~~~~~~ 113 (118)
+++.+.+.. |...|+..--++.+.
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhc
Confidence 888776544 455666554444443
No 175
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.67 E-value=0.48 Score=27.99 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=50.3
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLPV---KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
..++..+.+.+....+..+++.+.. .+...+|.+|..|++.+ .++.++.++. .++......+++.|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 3577888888888888888887642 36668888999888764 4455555552 122233333555555555
Q ss_pred ChhhHHHHHHHH
Q 046694 80 LVEKGKKFFDEM 91 (118)
Q Consensus 80 ~~~~a~~~~~~m 91 (118)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555444443
No 176
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.66 E-value=0.15 Score=34.53 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=50.1
Q ss_pred CCCHhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh-hhHHHHHH
Q 046694 27 VKDSASWITLILGYGMLG----------------ELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV-EKGKKFFD 89 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~ 89 (118)
.+|..+|+.|++.+=+-. .-+-+++++++|...|+.||..+-..+++++++-+-. .+..++.-
T Consensus 104 erDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~y 183 (406)
T KOG3941|consen 104 ERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLY 183 (406)
T ss_pred hhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHH
Confidence 568889998888775543 2366889999999999999999999999999988764 23334333
Q ss_pred HH
Q 046694 90 EM 91 (118)
Q Consensus 90 ~m 91 (118)
-|
T Consensus 184 Wm 185 (406)
T KOG3941|consen 184 WM 185 (406)
T ss_pred hh
Confidence 33
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.76 Score=31.02 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=71.3
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCC----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVK----------DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV 71 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 71 (118)
|++|+..+.-..-+++-+..|+.=..| -...-+.++....-.+.+.-.+.++.+.++..-+.++.--+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455555555444455555555433221 2234556677777778899999999999887656688888889
Q ss_pred HHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHH
Q 046694 72 LTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
.+.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 999999999999999999875544444444444443
No 178
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.40 E-value=0.3 Score=36.81 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=60.2
Q ss_pred HhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHH
Q 046694 10 TRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKK 86 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 86 (118)
-+.+++..|.+-|..-. .| +...||.+-.+|.+.++-.+|...+++-.+-+ .-+...|-.-+-...+.|.++.|.+
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 45566666666665433 33 66788888888888888888888888887766 3456666666677778888888888
Q ss_pred HHHHHhh
Q 046694 87 FFDEMQA 93 (118)
Q Consensus 87 ~~~~m~~ 93 (118)
.+.++.+
T Consensus 609 A~~rll~ 615 (777)
T KOG1128|consen 609 AYHRLLD 615 (777)
T ss_pred HHHHHHH
Confidence 8888733
No 179
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.36 E-value=0.079 Score=36.58 Aligned_cols=80 Identities=10% Similarity=0.158 Sum_probs=53.8
Q ss_pred CCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHH
Q 046694 13 GRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFD 89 (118)
Q Consensus 13 ~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (118)
++.++|.++|.... ..++..-.++-.+|.-.++++.|++.++++.+.|+. +...|+.+--+|.-.+++|.+.--|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 44455555554332 124444455556666778899999999999988876 66677777777777788887777777
Q ss_pred HHhh
Q 046694 90 EMQA 93 (118)
Q Consensus 90 ~m~~ 93 (118)
+...
T Consensus 383 RAls 386 (478)
T KOG1129|consen 383 RALS 386 (478)
T ss_pred HHHh
Confidence 6543
No 180
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.28 E-value=0.3 Score=35.76 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=64.1
Q ss_pred HHHHHHHhhhCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHHHHH
Q 046694 15 IDLANKIFDRLP-----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGKKFF 88 (118)
Q Consensus 15 ~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (118)
+....++|-++. .+|...+..|--.|--.|++++|.++|+..... +| |...||.+--.++...+-++|+..|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 445556665543 357788888888899999999999999998875 56 7889999999999999999999999
Q ss_pred HHHhhc
Q 046694 89 DEMQAR 94 (118)
Q Consensus 89 ~~m~~~ 94 (118)
.+..+.
T Consensus 488 ~rALqL 493 (579)
T KOG1125|consen 488 NRALQL 493 (579)
T ss_pred HHHHhc
Confidence 998763
No 181
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.35 Score=33.29 Aligned_cols=81 Identities=12% Similarity=-0.022 Sum_probs=61.6
Q ss_pred cCCHHHHHHHhhhCC-CC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhH
Q 046694 12 TGRIDLANKIFDRLP-VK------DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~-~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 84 (118)
...+++++..+-+++ +| +... .++++.+ -.-++++++.++..-.+.|+-||..+++.+++.+.+.++...|
T Consensus 77 ~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~a 154 (418)
T KOG4570|consen 77 REEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDA 154 (418)
T ss_pred ccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHH
Confidence 456778877777665 22 2222 2333333 3457889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 046694 85 KKFFDEMQAR 94 (118)
Q Consensus 85 ~~~~~~m~~~ 94 (118)
..+.-.|...
T Consensus 155 a~vvt~~~~q 164 (418)
T KOG4570|consen 155 ASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHH
Confidence 9888877443
No 182
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=94.13 E-value=0.58 Score=26.71 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=21.4
Q ss_pred HHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|..+
T Consensus 49 LmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 334444444444444444444444443322 2334444444444444443
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.07 E-value=0.81 Score=28.14 Aligned_cols=84 Identities=6% Similarity=-0.034 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHH
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~ 109 (118)
...-.+-..+...|++++|.++|+-+-.- .| +..-|-.+--++-..|++++|+..|........ -|+..+-.+-.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 33444555667889999999999999764 45 444555555566677999999999999977663 567788888888
Q ss_pred HHHccccc
Q 046694 110 LIKYNQKA 117 (118)
Q Consensus 110 ~~~~g~~~ 117 (118)
+.+.|+.+
T Consensus 113 ~L~lG~~~ 120 (157)
T PRK15363 113 YLACDNVC 120 (157)
T ss_pred HHHcCCHH
Confidence 88888764
No 184
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=0.89 Score=36.17 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=62.2
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
|+.+-.+=.+.|.+.+|++-|- +..|+..|..+|....+.|.|++..+.+...++..-+|... +.+|-+|++.+++
T Consensus 1107 WsqlakAQL~~~~v~dAieSyi--kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYI--KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHH--hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchH
Confidence 6666666667777777777664 34577889999999999999999999998877776666655 4677788888777
Q ss_pred hhHHHH
Q 046694 82 EKGKKF 87 (118)
Q Consensus 82 ~~a~~~ 87 (118)
.+.+++
T Consensus 1183 ~elE~f 1188 (1666)
T KOG0985|consen 1183 TELEEF 1188 (1666)
T ss_pred HHHHHH
Confidence 665543
No 185
>PLN02789 farnesyltranstransferase
Probab=94.04 E-value=1.3 Score=30.42 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=73.9
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCC---CCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLPV---KDSASWITLILGYGMLG-ELDVAINLFEAMREDGVEYYPVSHIGVLTACSLG 78 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (118)
+.+-..+...++.++|..++++... .+..+|+..-..+...| .+++++..++++.+..-+ +..+|+----.+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 3445566677889999999987763 35556665555666667 689999999999876433 444565443344455
Q ss_pred CC--hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 79 GL--VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 79 ~~--~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
|. .+.+..+++++.+..- -|...|+..--++.+.|++
T Consensus 120 ~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhH
Confidence 54 3677888888876542 3677777666655555543
No 186
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=1.9 Score=32.11 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=72.1
Q ss_pred HHHHHHhcCCHHHHHHHhh--------hCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHH-
Q 046694 5 RLDFYTRTGRIDLANKIFD--------RLP--VKDSASWITLILGYGMLGELDVAINLFEAMRED--GVEYYPVSHIGV- 71 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~--------~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l- 71 (118)
+++.....|+++.|.+++. .+. .....+...+...+.+.++-+.|-.++++-... .-.+.....+++
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 4667788899999999888 333 124445566777777777666666666655321 111222333333
Q ss_pred ---HHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHc
Q 046694 72 ---LTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113 (118)
Q Consensus 72 ---l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~ 113 (118)
..-=.++|+.++|..+++++.+.. ++|..+...++.+|++.
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 333347799999999999997753 67899999999999864
No 187
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.98 E-value=2.2 Score=33.23 Aligned_cols=72 Identities=25% Similarity=0.191 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHhhhCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhH
Q 046694 11 RTGRIDLANKIFDRLPV---KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 84 (118)
|.|+.++|..+++.... .|..|-..+-..|...+..++|..+|++.... -|+......+..+|.+.+++..-
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666655441 25556666666666666666666666665432 35555555555666665555443
No 188
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.95 E-value=0.29 Score=22.92 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046694 33 WITLILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (118)
|..+-..|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555544
No 189
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.91 E-value=0.69 Score=35.61 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=61.4
Q ss_pred HhcCCHHHHHHHhhhCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHH
Q 046694 10 TRTGRIDLANKIFDRLPVK--DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKF 87 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 87 (118)
.....|.+|+.+.+.+..+ ...-|..+-..|+..|+++.|.++|-+- .-|+-.|..|.+.|.++.|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 3445666777777766533 2334667778888889999998888653 2366778889999999999888
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 88 FDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 88 ~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
-++.. |-+...+.|-+-..-+-+.|+
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcc
Confidence 76652 333344444443333333333
No 190
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=1.2 Score=29.70 Aligned_cols=28 Identities=14% Similarity=0.041 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 64 YPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
|...|--+-+.|...|++++|...++++
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 4444444444444444444444444444
No 191
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.70 E-value=0.0076 Score=35.91 Aligned_cols=105 Identities=8% Similarity=0.114 Sum_probs=64.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
+++.|.+.+....+..+++... ..+....+.++..|++.+..++..++++.. +......+++.|-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 4555556666666655555443 236777888888888888778888777721 11333455666666666
Q ss_pred hhhHHHHHHHHhhcC--C------------------CccHHHHHHHHHHHHHcccc
Q 046694 81 VEKGKKFFDEMQARN--V------------------KPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g--~------------------~~~~~t~~~li~~~~~~g~~ 116 (118)
++.+.-++.++.... + .++...|..+++.|...+..
T Consensus 86 ~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 666666666652211 0 35678888888888766543
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.66 E-value=0.28 Score=23.00 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHH
Q 046694 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105 (118)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ 105 (118)
+..+-..|.+.|++++|.++|++..+.. +-|...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 4556778888899999999998887752 223444443
No 193
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.66 E-value=0.3 Score=22.05 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
.+++.+-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355666666666666666666666654
No 194
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=1.1 Score=32.72 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=79.8
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChh
Q 046694 7 DFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~ 82 (118)
..|....+-++.++.|++-. ..|..+|..--..+.-.+++++|..=|++..+- .| +...|--+--+.-+.+.++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHH
Confidence 45666777777788887554 347778888777778888899999999887764 33 4445544444455888999
Q ss_pred hHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 83 KGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
.+.+.|++.+++ ++-.+..|+-.-.++...++++
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHH
Confidence 999999999664 6667888888888887777665
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.63 E-value=0.82 Score=35.39 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=78.6
Q ss_pred HhcCCHHHHHHHhhhCC--CCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHH
Q 046694 10 TRTGRIDLANKIFDRLP--VKDSASWITLILGYG--MLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
..++++.+|....+++. -|| ..|..++.++. +.|..++|..+++.....+.. |..|...+-.+|-+.+..++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34677788877777664 233 34666666654 569999999999998766544 8999999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 86 KFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 86 ~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.+|+.... .-|+......+..+|.|-+++
T Consensus 98 ~~Ye~~~~--~~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 98 HLYERANQ--KYPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHh--hCCcHHHHHHHHHHHHHHHHH
Confidence 99999854 345677777778888776553
No 196
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.63 E-value=2.3 Score=31.96 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC--CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP--VKDS-ASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~--~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
-+.+.|-+.|+++.|....+.-. .|.. .-|.+--+.+..+|++++|..++++.++-. .||...=+--.+-..++.+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccc
Confidence 35677888999999999988665 3332 244444578888999999999999987653 2454444455666678899
Q ss_pred hhhHHHHHHHHhhcCC
Q 046694 81 VEKGKKFFDEMQARNV 96 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~ 96 (118)
.++|.++...+.+.|.
T Consensus 455 i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF 470 (700)
T ss_pred cHHHHHHHHHhhhccc
Confidence 9999999999977775
No 197
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.54 E-value=0.41 Score=36.16 Aligned_cols=80 Identities=23% Similarity=0.179 Sum_probs=57.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhH
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 84 (118)
+...+.+.|-+..|..+|++.. .|..+|..|+..|+..+|..+..+..+ -+||..-|..+.+..-...-+++|
T Consensus 404 laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 3456667777888888887543 577777888888888888888777665 367777787777777766667777
Q ss_pred HHHHHHH
Q 046694 85 KKFFDEM 91 (118)
Q Consensus 85 ~~~~~~m 91 (118)
.++++..
T Consensus 477 wElsn~~ 483 (777)
T KOG1128|consen 477 WELSNYI 483 (777)
T ss_pred HHHhhhh
Confidence 7766664
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.47 E-value=1.5 Score=29.31 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=63.5
Q ss_pred HHhcCCHHHHHHHhhhCC--------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcc-HHHHHHHHHHHhcC
Q 046694 9 YTRTGRIDLANKIFDRLP--------VKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY-PVSHIGVLTACSLG 78 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~ 78 (118)
+.+.|++..|..-|.... .||..-| |-..+...|+.+.|-.+|-.+.+. +-.|. .....-+-.+..+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 567888999999988664 2243333 678888899999999999999765 22232 36667777778899
Q ss_pred CChhhHHHHHHHHhhc
Q 046694 79 GLVEKGKKFFDEMQAR 94 (118)
Q Consensus 79 ~~~~~a~~~~~~m~~~ 94 (118)
|+-++|...|+++.+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999998664
No 199
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=1.9 Score=31.57 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=78.3
Q ss_pred HHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcCCChhh
Q 046694 8 FYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP-VSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 83 (118)
+-...|+++.|+.+|-+-. .+|.+.|+.-..+|+..|++++|++=-.+-++ +.|+. --|+-.-.+..-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 4467899999999996543 55999999999999999999999887666555 46774 568888888888999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHH
Q 046694 84 GKKFFDEMQARNVKPTETHYACMVYLL 110 (118)
Q Consensus 84 a~~~~~~m~~~g~~~~~~t~~~li~~~ 110 (118)
|..-|.+=.+.. +.+...++.+.+++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999998865532 33466666666665
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.23 E-value=1.1 Score=27.07 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMREDG-V-EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
..|+.-..+ .+.|++++|.+.|+.+...- . +-....--.++.++-+.++++.|...++++.+..-.-...-|.-.+.
T Consensus 12 ~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344444443 46899999999999998651 1 22456677789999999999999999999988776544556666666
Q ss_pred HHHH
Q 046694 109 LLIK 112 (118)
Q Consensus 109 ~~~~ 112 (118)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5543
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.13 E-value=1 Score=28.62 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHhcCCHHHHHHHhhhCCC--C----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 7 DFYTRTGRIDLANKIFDRLPV--K----DSASWITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
..+...|++++|...|+++.. | -....-.+..++-+.|++++|...|++..+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678999999999998862 1 2234456778889999999999999998764
No 202
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.13 E-value=1.3 Score=35.06 Aligned_cols=112 Identities=10% Similarity=0.023 Sum_probs=66.0
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHH--H
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPVSHIGVLTA--C 75 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~--~ 75 (118)
|+.|-..|...-+..+|.+.|++-. ..+...+-.....|+...++++|..+ .+... +-+.-...+|..-++ |
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I--~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI--CLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH--HHHHhhhchHHHHHhhhhhccccc
Confidence 5566666776667888888888665 34677788888889999999988888 22211 111122233333222 2
Q ss_pred hcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.+.++...+..-|+...+.. +.|...|..+.++|.++|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCce
Confidence 34455555555555543321 22556666666666666654
No 203
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.13 E-value=1.1 Score=35.10 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
...-.+..+|-+.|+.+++..+++++.+.. +-|+...|.+-..|+.. ++++|.+++.+...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 355556666667777777777777777655 33667777777777777 77777776666533
No 204
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.08 E-value=2.1 Score=31.17 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=73.1
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH-HHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP-----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH-IGVLTAC 75 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~ 75 (118)
|+..|+.--+..-++.|+.+|-+.. .+++..++++|.-++ .|+..-|.++|+-=... -||...| +-.+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 6677777778888999999998775 458888899888765 57777888888754322 3444443 3456666
Q ss_pred hcCCChhhHHHHHHHHhhcCCCcc--HHHHHHHHHHHHHcccc
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPT--ETHYACMVYLLIKYNQK 116 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~~li~~~~~~g~~ 116 (118)
...++-+.|..+|+.-..+ ++.+ ...|..+|+.=+.-|++
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 6777778888888743221 1112 45566666665555543
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.97 E-value=1.6 Score=28.68 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=28.9
Q ss_pred HhcCCHHHHHHHhhhCC--CCCH-hhH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 10 TRTGRIDLANKIFDRLP--VKDS-ASW---ITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~--~~~~-~~~---~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
.+.|++++|...|+++. -|+. ..- -.+..++.+.+++++|...|++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44577777777777664 1211 111 23345556667777777777777554
No 206
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.97 E-value=1.3 Score=32.67 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHHHHHHH
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGKKFFDE 90 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (118)
.+|-..|+.--+..-+..|..+|.+.++.+..+ .+.++++++.-+|. ++.+.|.++|+-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL 426 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL 426 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence 345555555555555666666666666555554 55555555555554 455556665554
No 207
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.92 E-value=2.1 Score=33.15 Aligned_cols=90 Identities=10% Similarity=-0.139 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC-------CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC--c-cHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP-------VK--DSASWITLILGYGMLGELDVAINLFEAMRE----DGVE--Y-YPVS 67 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~~~ 67 (118)
.+-..+...|++++|...+++.. .+ ...+...+-..+...|+++.|...+++... .+.. | ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 34455667889998888887654 11 122444555667778999999888887643 2221 1 2233
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 68 HIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
+..+-..+...|++++|...+++...
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 44455566677999999888887633
No 208
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.90 E-value=2.6 Score=30.39 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHH
Q 046694 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFD 89 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (118)
.+.|+++.|.++-++.. +...|..|-....+.|+++.|.+.|++..+ |..++=-|.-.|+.+.-.++.+
T Consensus 329 l~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 34455555555554443 556888888888888888888888887653 3334444444555555555544
Q ss_pred HHhhcC
Q 046694 90 EMQARN 95 (118)
Q Consensus 90 ~m~~~g 95 (118)
.-...|
T Consensus 398 ~a~~~~ 403 (443)
T PF04053_consen 398 IAEERG 403 (443)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 444433
No 209
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.73 E-value=0.43 Score=21.53 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 65 PVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
..+++.+-..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46788999999999999999999999743
No 210
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.71 E-value=2.2 Score=28.99 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=77.5
Q ss_pred CCHHHHHHHhhhCCC-----CCHhhHHHHHHHHHh-cC-CHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHhcCCChhhH
Q 046694 13 GRIDLANKIFDRLPV-----KDSASWITLILGYGM-LG-ELDVAINLFEAMR-EDGVEYYPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 13 ~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a 84 (118)
..+.+|.++|+.... .|..+-..+++.... .+ ....-.++.+.+. ..|-.++..+...+|+.+++.+++++-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 346688888884432 366666677766665 22 3444444555554 335678999999999999999999999
Q ss_pred HHHHHHHhhc-CCCccHHHHHHHHHHHHHcccc
Q 046694 85 KKFFDEMQAR-NVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 85 ~~~~~~m~~~-g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.++++.-... +..-|...|...|+...++|+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 9999988555 6778999999999999999975
No 211
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=2.1 Score=28.70 Aligned_cols=107 Identities=19% Similarity=0.169 Sum_probs=64.7
Q ss_pred HHHHhcCCHHHHHHHhhhCCC-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 7 DFYTRTGRIDLANKIFDRLPV-----KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
-+-..+|+.+.|...++++.. +.+.-...+. +-..|.+++|+++++.+.++. +-|.+++-.=+-..-..|.-
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 344456777777777766541 1222222221 223477888888888887765 34666666555555455554
Q ss_pred hhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 82 EKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
-+|++-+.+..+. +..|...|.-+-+.|..-|+++
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHH
Confidence 4666665555553 5668888888888888777664
No 212
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.60 E-value=4 Score=31.82 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=53.6
Q ss_pred HHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHH
Q 046694 9 YTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
|++ |++++|..++.+.. ..+...|-+|-..|-+.|+.++++..+=-.-.. -+-|...|..+-+-..+.|+++.|.
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHH
Confidence 444 78888888887765 236667777777777777777776654332221 2235566666666666777777777
Q ss_pred HHHHHHhhc
Q 046694 86 KFFDEMQAR 94 (118)
Q Consensus 86 ~~~~~m~~~ 94 (118)
-+|.+....
T Consensus 228 ~cy~rAI~~ 236 (895)
T KOG2076|consen 228 YCYSRAIQA 236 (895)
T ss_pred HHHHHHHhc
Confidence 766666554
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.26 E-value=3.3 Score=30.34 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCc-cHHHHHHHH
Q 046694 38 LGYGMLGELDVAINLFEAMREDG-VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKP-TETHYACMV 107 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~t~~~li 107 (118)
...-+.|+.++|.+.|++|.+.. ..-.....-.+++++...+...++..++.+-.+...+. -...|+..+
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33446699999999999997642 22245577789999999999999999999975543322 255566544
No 214
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=1.1 Score=31.66 Aligned_cols=83 Identities=8% Similarity=0.001 Sum_probs=55.3
Q ss_pred HHHHhcCCHHHHHHHhhhCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH-HHHHhcCCCh
Q 046694 7 DFYTRTGRIDLANKIFDRLP----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV-LTACSLGGLV 81 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~ 81 (118)
+.+--..+++++...++.++ ..|...|| +-.+++.-|...+|.++|-+.....++ |..+|..+ .++|.+.+.+
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCc
Confidence 34444455666655555554 22444443 567777889999999999887665555 56666655 6777889999
Q ss_pred hhHHHHHHHH
Q 046694 82 EKGKKFFDEM 91 (118)
Q Consensus 82 ~~a~~~~~~m 91 (118)
+.|+.++=.+
T Consensus 445 ~lAW~~~lk~ 454 (557)
T KOG3785|consen 445 QLAWDMMLKT 454 (557)
T ss_pred hHHHHHHHhc
Confidence 9988776555
No 215
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=92.03 E-value=1.6 Score=26.03 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 45 ELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
+.-+..+.++.+....+.|+..+.-+.|++|-+.+++..|.++|+-.+.. +.+....|..+++
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 45566777777777889999999999999999999999999999998442 3333335555554
No 216
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=92.00 E-value=0.57 Score=31.83 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 69 (118)
-|+..|....+.||+++|+++++|-++.|+.--..+|-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34556666666666666666666666555544344443
No 217
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.99 E-value=1.9 Score=26.66 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=51.8
Q ss_pred HhcCCHHHHHHHhhhCC--CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhH
Q 046694 10 TRTGRIDLANKIFDRLP--VK---DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 84 (118)
.+.++.+++..+++-+. .| ...++..++. ...|+|.+|.++|+++.+.. |...--.+|+..|.... -|-.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~-~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL-GDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc-CChH
Confidence 46689999999999876 44 4445555554 67899999999999987653 33333344444444322 2223
Q ss_pred HHHH-HHHhhcCCCccH
Q 046694 85 KKFF-DEMQARNVKPTE 100 (118)
Q Consensus 85 ~~~~-~~m~~~g~~~~~ 100 (118)
++.+ +++.+.+-.|+.
T Consensus 96 Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 96 WRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHHhcCCChHH
Confidence 3333 334555444443
No 218
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=1.3 Score=32.87 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 046694 7 DFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLF 53 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~ 53 (118)
+-+.+.|++++|.+.-+++. ..+...+..-+-+.++.+.+++|+++.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i 69 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI 69 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH
Confidence 34455666777766666554 124444555555555555555555433
No 219
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=4.2 Score=29.88 Aligned_cols=87 Identities=15% Similarity=0.034 Sum_probs=61.2
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChh
Q 046694 7 DFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~ 82 (118)
+.+-+.|++..|++.|.++. ..|...|...--+|.+.|.+..|++--+...+. .| ...-|.-=..++--..+++
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999998875 338889999999999999999998877776654 23 2333333344444455677
Q ss_pred hHHHHHHHHhhcC
Q 046694 83 KGKKFFDEMQARN 95 (118)
Q Consensus 83 ~a~~~~~~m~~~g 95 (118)
.|.+.|.+-.+..
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777765543
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.38 E-value=1.7 Score=26.26 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVE 62 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 62 (118)
-+....+.|+-|+..+++.++. .+++...-.+-.+|.+.|+..++.+++.+.=+.|++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3667778888888888888865 667777788889999999999999999998887764
No 221
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=91.37 E-value=0.93 Score=21.92 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=14.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 046694 42 MLGELDVAINLFEAMREDGVEYYPVSHIGVL 72 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 72 (118)
+.|-.+++..++++|++.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344445555555555555544444444443
No 222
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.32 E-value=2.1 Score=25.91 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=66.2
Q ss_pred HHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHH---HHHHHHHHHhcCCC
Q 046694 8 FYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMRED-GVEYYPV---SHIGVLTACSLGGL 80 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~---~~~~ll~~~~~~~~ 80 (118)
+.+..|+.+.|++.|.+-. ..+...||.--.++--.|+.++|++=+++-.+. |-+ +.. .|.---..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 5678899999999998764 458899999999999999999999999988764 322 222 23333344567788
Q ss_pred hhhHHHHHHHHhhcC
Q 046694 81 VEKGKKFFDEMQARN 95 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g 95 (118)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888776655
No 223
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.25 E-value=1.7 Score=28.55 Aligned_cols=73 Identities=7% Similarity=-0.051 Sum_probs=52.4
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhC-C-CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRL-P-VK-DSASWITLILGYGMLGELDVAINLFEAMRED--GVEYYPVSHIGVLTA 74 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m-~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~ 74 (118)
-+..++.+.+.+.+.+|+...++- + +| |...-..+++.+|-.|+|++|+.-++-.-.. ...+-...|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345677888899999998888644 3 33 7777888999999999999998777665432 223445666666665
No 224
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=91.23 E-value=0.47 Score=30.33 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------ccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 34 ITLILGYGMLGELDVAINLFEAMREDGVE--------------YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
-++|..|-+.-+|.++.++++.|.+..++ +--...|.....|.+.|.+|.|..+++ +..+..+
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~ 212 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIIS 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeec
Confidence 46778888888999999999999764433 334678899999999999999999987 4444444
Q ss_pred HHHH
Q 046694 100 ETHY 103 (118)
Q Consensus 100 ~~t~ 103 (118)
..+|
T Consensus 213 t~lW 216 (233)
T PF14669_consen 213 TPLW 216 (233)
T ss_pred CCCC
Confidence 4433
No 225
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.15 E-value=5.6 Score=30.45 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYA 104 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~ 104 (118)
.|-...+.+-.+|+...|..++++.-+.. +-+...|.+.++.-....+++.|..+|.+... ..|+...|.
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~m 655 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWM 655 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhH
Confidence 34444444455566666666665554432 11555566666666666666666666655433 344444443
No 226
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=91.11 E-value=5.8 Score=30.56 Aligned_cols=111 Identities=12% Similarity=0.040 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVK---DSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGG 79 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 79 (118)
..-..+.+.+.-++|.....+...- ....|...-..+...|.+++|...|..-.. +.| .+....++-..+.+.|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhC
Confidence 3445667777777777555554422 444555555566667888888888887654 345 4566777778888888
Q ss_pred ChhhHHH--HHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 80 LVEKGKK--FFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 80 ~~~~a~~--~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
+...|.+ ++.++.+.+ +.+...|-.+=..+-+.|+.+
T Consensus 733 ~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred CcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchH
Confidence 8777777 888887754 336778888888887777754
No 227
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.10 E-value=2 Score=25.30 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=44.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHH
Q 046694 30 SASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFD 89 (118)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (118)
......+|..+...+.+..+...++.+...+ ..+...++.++..|++... +.....++
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~ 64 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLD 64 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHH
Confidence 3445678888888899999999999998877 3688899999999998643 33334444
No 228
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=90.82 E-value=1.1 Score=21.69 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=30.3
Q ss_pred HhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHH
Q 046694 75 CSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109 (118)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~ 109 (118)
.-+.|-++++..++++|.+.|+..+...+..+++-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 35678888999999999999999999999887763
No 229
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=90.76 E-value=2.5 Score=25.71 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=66.2
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC---------CCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHHHH
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP---------VKDSASWITLILGYGMLGE-LDVAINLFEAMREDGVEYYPVSHIGVL 72 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 72 (118)
|++|.-....+++.-...+++.+. ..+-.+|++++++.++... ---+..+|+-|++.+.+++...|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 566666677778887777777764 2367799999999988877 677899999999988999999999999
Q ss_pred HHHhcCCChhhH
Q 046694 73 TACSLGGLVEKG 84 (118)
Q Consensus 73 ~~~~~~~~~~~a 84 (118)
.++.+....+..
T Consensus 123 ~~~l~g~~~~~~ 134 (145)
T PF13762_consen 123 KAALRGYFHDSL 134 (145)
T ss_pred HHHHcCCCCcch
Confidence 998876554444
No 230
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=4.9 Score=29.02 Aligned_cols=112 Identities=11% Similarity=-0.059 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCCHhhHH---HHHHHHHhcCCHHHHHHHHHHHHHcC--------------------
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVKDSASWI---TLILGYGMLGELDVAINLFEAMREDG-------------------- 60 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~-------------------- 60 (118)
++-.++...|+.++|+..|++...-|+.+-. .---.+.+.|+.+....+...+-...
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 4567788899999999999977633222111 11112233444444444443332110
Q ss_pred ----------C--Cc-cHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCC-ccHHHHHHHHHHHHHccccc
Q 046694 61 ----------V--EY-YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK-PTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 61 ----------~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~t~~~li~~~~~~g~~~ 117 (118)
+ .| +...|-.=-+.+...++++.|.=.|+..+. +. -+...|.-|+++|...|++.
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 1 11 111111112334455777777777776644 34 46899999999999888764
No 231
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=90.63 E-value=2.1 Score=24.58 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=37.2
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCC----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLP----------VKDSASWITLILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (118)
++|+.+|... +...+..++..=. -....-|..++.-|...|..++|++++.++..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5677788777 6666655554211 01334688888888888888888888888766
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=4.1 Score=28.90 Aligned_cols=90 Identities=18% Similarity=0.042 Sum_probs=65.1
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh-c
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS-L 77 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~ 77 (118)
++.|..+|.|.+++..|++.-++.. .+|+..-----.++...|+++.|...|+++.+. .|+-..-..-|..|. +
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQK 337 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 4567778899999999998887654 556665555567888899999999999999874 665455555444444 4
Q ss_pred CCCh-hhHHHHHHHHhh
Q 046694 78 GGLV-EKGKKFFDEMQA 93 (118)
Q Consensus 78 ~~~~-~~a~~~~~~m~~ 93 (118)
.... +...++|..|..
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 4444 455788888843
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.21 E-value=3.3 Score=26.28 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcC
Q 046694 38 LGYGMLGELDVAINLFEAMREDG--VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (118)
..+...|++.+|.+.|+.+...- -+--....-.+..++-+.|+++.|...++++.+.-
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34557899999999999998652 12234555677888999999999999999986643
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.06 E-value=5.8 Score=28.82 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHhhhCCC-------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh-cCCCh
Q 046694 10 TRTGRIDLANKIFDRLPV-------KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS-LGGLV 81 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~ 81 (118)
...|++++|++.|++... -....+--+.-.+.-..+|++|.+.|.++.+.. .-+..+|.=+..+|. ..++.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccc
Confidence 345666666666664321 022223333333455566677777666665532 123333333322222 33444
Q ss_pred -------hhHHHHHHHH
Q 046694 82 -------EKGKKFFDEM 91 (118)
Q Consensus 82 -------~~a~~~~~~m 91 (118)
++|.++|.+.
T Consensus 357 ~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 357 EEAKEHKKEAEELFRKV 373 (468)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 5566666554
No 235
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.91 E-value=0.67 Score=19.09 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=12.5
Q ss_pred HHHHHHhcCCHHHHHHHhh
Q 046694 5 RLDFYTRTGRIDLANKIFD 23 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~ 23 (118)
+-..+...|++++|..+++
T Consensus 7 la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 4456666777777776665
No 236
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=89.87 E-value=3.4 Score=25.94 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 37 ILGYGMLGELDVAINLFEAMRE-DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
+......++.+......+...+ ....|+..+|..++..+...|+.++|.++..++...
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333355666666655555543 245899999999999999999999999999998664
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.78 E-value=0.97 Score=19.50 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (118)
+|..+-..|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666544
No 238
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.74 E-value=0.054 Score=32.18 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHH
Q 046694 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDE 90 (118)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (118)
.+|..+.+.+.+..+.+.++.+...+-..+....+.++..|++.+..+...++++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~ 67 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT 67 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc
Confidence 46777888899999999999999877667899999999999999888888877773
No 239
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=89.70 E-value=3.8 Score=26.24 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=56.4
Q ss_pred HHHHhcCCHHHHHHHhhhCC------CCCHhhHHHHHH-HHHhcCC--HHHHHHHHHHHHHcCCCccH----HHHHHHHH
Q 046694 7 DFYTRTGRIDLANKIFDRLP------VKDSASWITLIL-GYGMLGE--LDVAINLFEAMREDGVEYYP----VSHIGVLT 73 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~~~~~p~~----~~~~~ll~ 73 (118)
......|++++|.+.++++. ..-...|..+.. +++..+. +-+|.-++.-+...+++ +. +.+-.-|.
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~p-s~~EL~V~~~~Yil 115 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLP-SPEELGVPPIAYIL 115 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCC-CHHHcCCCHHHHHH
Confidence 34456788999998888775 235567777776 7777764 77787777777655432 21 12222233
Q ss_pred HHh--------------cCCChhhHHHHHHHHhh
Q 046694 74 ACS--------------LGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 74 ~~~--------------~~~~~~~a~~~~~~m~~ 93 (118)
+.+ +.|+++.|.+.++-|.+
T Consensus 116 Gl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 116 GLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 332 56899999998888854
No 240
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=89.59 E-value=4 Score=26.32 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=70.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHhcCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVE-YYPVSHIGVLTACSLGG 79 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~ 79 (118)
|-.+..+.|+..+|...|++-. ..|....-.+-++-...+++.+|...++.+-+..-. -++.+.-.+-+.+...|
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g 174 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence 4567788899999999998775 346666666667777779999999999998765311 13445566778888888
Q ss_pred ChhhHHHHHHHHhhcCCCccHH
Q 046694 80 LVEKGKKFFDEMQARNVKPTET 101 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~ 101 (118)
..+.|+.-|+...+.--.|...
T Consensus 175 ~~a~Aesafe~a~~~ypg~~ar 196 (251)
T COG4700 175 KYADAESAFEVAISYYPGPQAR 196 (251)
T ss_pred CchhHHHHHHHHHHhCCCHHHH
Confidence 8888888888887754444433
No 241
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.56 E-value=3.3 Score=25.35 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=43.4
Q ss_pred hcCCHHHHHHHhhhCC--CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 11 RTGRIDLANKIFDRLP--VK---DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
..++.+++..+++.|. .| ...++..++. ...|+|.+|.++|+++.+.+.. ..|...+-++|
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSSAGA---PPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhccCCC---chHHHHHHHHH
Confidence 4788999999999886 34 5556666665 6789999999999999876432 24444444444
No 242
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.43 E-value=1.4 Score=20.95 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=11.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 046694 37 ILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~ 58 (118)
-.+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3455555555555555555553
No 243
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.38 E-value=2 Score=32.81 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=58.1
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHH
Q 046694 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
+.+++..+++++.+++-.++++ +.-|..++.+|.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.
T Consensus 722 ~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv~~l------~---ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRVGGL------Q---EKVKAYLRVGDVKEAA 790 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhccCCh------H---HHHHHHHHhccHHHHH
Confidence 5678899999999999887776 566899999999999999999998875421 1 4567788888888877
Q ss_pred HHHH
Q 046694 86 KFFD 89 (118)
Q Consensus 86 ~~~~ 89 (118)
++--
T Consensus 791 d~A~ 794 (829)
T KOG2280|consen 791 DLAA 794 (829)
T ss_pred HHHH
Confidence 6543
No 244
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=89.16 E-value=3.8 Score=25.44 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
.++..+...+.+-.|.++++++++.+..++..|.-.-|+.+.+.|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33333333444445555555555555444544444444555555444
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.16 E-value=4.9 Score=26.78 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMREDG--VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
.-|+..+.. .+.|++++|.+.|+.+.+.- -+-...+--.++-++-+.++.+.|....++..+..-.....-|.--|.
T Consensus 36 ~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 345555544 47899999999999997542 123566677778888899999999999999866554444445555555
Q ss_pred HHHH
Q 046694 109 LLIK 112 (118)
Q Consensus 109 ~~~~ 112 (118)
+++.
T Consensus 115 gLs~ 118 (254)
T COG4105 115 GLSY 118 (254)
T ss_pred HHHH
Confidence 5543
No 246
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=89.12 E-value=8.6 Score=29.52 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=86.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCccHHHHHHHHHHHhc
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAM----REDGVEYYPVSHIGVLTACSL 77 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~ 77 (118)
|.-+|++..-++.|.+++++.+ ..+...|.+--..=-..|..+.+.++.++- ...|++.+...|..=-..|-+
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 4567888888889999988765 347778887777777889999999888765 457899999999888888889
Q ss_pred CCChhhHHHHHHHHhhcCCCc--cHHHHHHHHHHHHHccc
Q 046694 78 GGLVEKGKKFFDEMQARNVKP--TETHYACMVYLLIKYNQ 115 (118)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~--~~~t~~~li~~~~~~g~ 115 (118)
.|.+-.+..+.......|++- -..||+.--+.|.+.+.
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 998888888888888877753 35677766666665543
No 247
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=88.99 E-value=1.9 Score=23.04 Aligned_cols=82 Identities=10% Similarity=0.145 Sum_probs=46.2
Q ss_pred HHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHhcCCChhh
Q 046694 7 DFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPV---SHIGVLTACSLGGLVEK 83 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~ 83 (118)
...++.|+++-+..+.+.-...+. -+..+...+..|.. ++++.+.+.|..|+.. -++++.- .+..|+.+
T Consensus 2 ~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~- 73 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNLE- 73 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHHH-
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCHH-
Confidence 456788898888888884433333 22244445566775 4555555677666553 3333333 45556544
Q ss_pred HHHHHHHHhhcCCCcc
Q 046694 84 GKKFFDEMQARNVKPT 99 (118)
Q Consensus 84 a~~~~~~m~~~g~~~~ 99 (118)
+.+.+.+.|..++
T Consensus 74 ---~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 ---IVKLLLEHGADVN 86 (89)
T ss_dssp ---HHHHHHHTTT-TT
T ss_pred ---HHHHHHHcCCCCC
Confidence 5556666676665
No 248
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=88.97 E-value=2.8 Score=23.75 Aligned_cols=62 Identities=11% Similarity=-0.019 Sum_probs=34.5
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCCC--HhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCcc
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLPVKD--SASWITLILGYGML--GELDVAINLFEAMREDGVEYY 64 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~ 64 (118)
..+|..|...|+.++|...+.++..|+ ......+|...... ..-+.+..++.++...+..+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 356777888889999988888887551 11222233333222 235556666666666655433
No 249
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.87 E-value=9.5 Score=29.68 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=69.4
Q ss_pred HHHhcCCHHHHHHHhhhCC----CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-ccHHHHHHHHHH
Q 046694 8 FYTRTGRIDLANKIFDRLP----VKD----SASWITLILGYGMLGELDVAINLFEAMRED----GVE-YYPVSHIGVLTA 74 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~----~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~ 74 (118)
.+...|++++|...+++.. ..+ ....+.+-..+...|++++|...+.+.... |-. +-......+-..
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 4457899999998887643 222 134455566677889999999999988642 211 122345556667
Q ss_pred HhcCCChhhHHHHHHHHhh----cCCC--c-cHHHHHHHHHHHHHccccc
Q 046694 75 CSLGGLVEKGKKFFDEMQA----RNVK--P-TETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~----~g~~--~-~~~t~~~li~~~~~~g~~~ 117 (118)
+...|+++.|...+++..+ .|.. + ....+..+-..+...|+++
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 7889999999999888633 2321 1 2223334444555556654
No 250
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.85 E-value=5.9 Score=27.27 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH-----hhcCCCccHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM-----QARNVKPTETHYAC 105 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m-----~~~g~~~~~~t~~~ 105 (118)
+.+..-+.|..+|.+.+|.++-++...-. +.+...+-.++..++..|+-=.+.+-++++ .+.|+..+-..++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieew 358 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEW 358 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHH
Confidence 34455578889999999999999987642 447888889999999999977777777776 45677776665553
No 251
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=88.83 E-value=5 Score=26.41 Aligned_cols=60 Identities=17% Similarity=0.036 Sum_probs=44.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH---HHHHHHHhcCCChhhHHHHHHHHhhcCC
Q 046694 36 LILGYGMLGELDVAINLFEAMREDGVEYYPVSH---IGVLTACSLGGLVEKGKKFFDEMQARNV 96 (118)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (118)
.-..+.+.|++++|.+.|+++...--. +...- -.+..++-+.++++.|...++++.+...
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 344456789999999999999875322 22222 3456778899999999999999976544
No 252
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=88.41 E-value=1.4 Score=29.96 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=39.4
Q ss_pred CCCccHHH-HHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 60 GVEYYPVS-HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 60 ~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
.+.|+..+ |+..|+...+.||+++|.+++++..+.|+.--..||-.-++
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 34565544 66899999999999999999999999999877777665443
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.34 E-value=5.5 Score=29.28 Aligned_cols=68 Identities=16% Similarity=0.067 Sum_probs=51.3
Q ss_pred HHHHhcCCHHHHHHHhhhCCC--C---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHH
Q 046694 7 DFYTRTGRIDLANKIFDRLPV--K---DSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTA 74 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~ 74 (118)
.+.-+.|+.++|++.|.+|.+ | +......++..+...+...++..++.+-.+...+. -...|+..+--
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 344577999999999998852 3 45578899999999999999999999975443332 35677776543
No 254
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=4.7 Score=28.04 Aligned_cols=87 Identities=13% Similarity=-0.032 Sum_probs=63.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMRED---GVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ 105 (118)
...+-...+..-....+++.+...+-+++.. -..|+...+. +++- +-.-++++++.+...-..+|+=||..++..
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHH-HHccChHHHHHHHhCcchhccccchhhHHH
Confidence 4456666666666667899999988888754 2233333332 2222 233578899999999999999999999999
Q ss_pred HHHHHHHccccc
Q 046694 106 MVYLLIKYNQKA 117 (118)
Q Consensus 106 li~~~~~~g~~~ 117 (118)
+|+.+.+.++..
T Consensus 141 l~D~flk~~n~~ 152 (418)
T KOG4570|consen 141 LMDSFLKKENYK 152 (418)
T ss_pred HHHHHHhcccHH
Confidence 999999998753
No 255
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=6.1 Score=26.85 Aligned_cols=103 Identities=10% Similarity=-0.072 Sum_probs=72.3
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGML---GELDVAINLFEAMREDGVEY-YPVSHIGVLTA 74 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~ 74 (118)
|--|-..|.+.|+++.|..-|..-. .+|...+..+-.++... .+-.++..+|++.... .| |+..-.-+--.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~ 236 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFA 236 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 5567788999999999998887543 44655555555444444 3578899999998764 34 55566666677
Q ss_pred HhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 75 CSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 237 afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 788899999999999998853 33334444443
No 256
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.04 E-value=4 Score=27.82 Aligned_cols=79 Identities=13% Similarity=0.239 Sum_probs=50.1
Q ss_pred CHhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc--CC----ChhhHHHHHHHHhhcCC---C
Q 046694 29 DSASWITLILGYGML--GELDVAINLFEAMREDGVEYYPVSHIGVLTACSL--GG----LVEKGKKFFDEMQARNV---K 97 (118)
Q Consensus 29 ~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~g~---~ 97 (118)
...++.+++..-... ..+++.+.+++.|++.|++-+..+|.+..-.... .. ...++..+|+.|++... .
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 444555555544431 1377888999999999999888888774433332 22 35568899999966553 3
Q ss_pred ccHHHHHHHH
Q 046694 98 PTETHYACMV 107 (118)
Q Consensus 98 ~~~~t~~~li 107 (118)
++..++..|+
T Consensus 139 ~~D~~~a~lL 148 (297)
T PF13170_consen 139 PEDYPFAALL 148 (297)
T ss_pred ccchhHHHHH
Confidence 4444444443
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.91 E-value=4.3 Score=29.45 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=63.1
Q ss_pred cCCHHHHHHHhhhCCC--CCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHHc--CCC-ccHHHHHHHHHHHhcCCChhhHH
Q 046694 12 TGRIDLANKIFDRLPV--KDSASWITLI-LGYGMLGELDVAINLFEAMRED--GVE-YYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~--~~~-p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
..+.+.|.++++++.. |+...|.-.- +.+...|++++|++.|++.... ..+ .....+--+.-.+.-.+++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4578899999998874 7766665444 4455569999999999986532 221 22333444455567789999999
Q ss_pred HHHHHHhh-cCCCccHHHHH
Q 046694 86 KFFDEMQA-RNVKPTETHYA 104 (118)
Q Consensus 86 ~~~~~m~~-~g~~~~~~t~~ 104 (118)
+.|..+.+ ..+.+..++|-
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHhccccHHHHHHHH
Confidence 99999955 34554455444
No 258
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=87.83 E-value=3.4 Score=23.38 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC--ChhhHHHHHHHHhhcCCCcc
Q 046694 34 ITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG--LVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~ 99 (118)
..++..|...++.++|...++++.... --......++..+...+ .-+..-.++..+.+.+..+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~ 71 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISK 71 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCH
Confidence 456778888899999999999974331 12233333444444432 23345566666666665443
No 259
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=87.77 E-value=1.1 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 64 YPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
|...---+|.++...|++++|.++.+++
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444455555555555555554444
No 260
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.74 E-value=6.8 Score=26.68 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC----CCHhhHHHH-----HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPV----KDSASWITL-----ILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 75 (118)
|...-.+.||.+.|...|+...+ -|-.+++.+ -..|.-++++.+|.+.|++..... .-|+...|.=.-+.
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCL 296 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHH
Confidence 33444567899999999985541 232333332 234555678899999998886542 12344444433344
Q ss_pred hcCCChhhHHHHHHHHhhcCCCccHHHHHHHH
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
.-.|+...|.+..+.|... .|...+-++++
T Consensus 297 lYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 297 LYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 4568889999999998764 45555544433
No 261
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.69 E-value=6.1 Score=26.09 Aligned_cols=78 Identities=12% Similarity=-0.050 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHHHHHHHHh--hcCCCccHHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGKKFFDEMQ--ARNVKPTETHYACMVY 108 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~g~~~~~~t~~~li~ 108 (118)
|-+.-++.+.+.+.+.+++....+=.+. +| |...=-.++.-+|-.|++++|..=++-.. .-...+-..+|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3456678888999999999998887665 45 44555567899999999999986666552 2335566778888877
Q ss_pred HHH
Q 046694 109 LLI 111 (118)
Q Consensus 109 ~~~ 111 (118)
+=.
T Consensus 81 ~ea 83 (273)
T COG4455 81 CEA 83 (273)
T ss_pred HHH
Confidence 643
No 262
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.56 E-value=9.5 Score=28.17 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=58.2
Q ss_pred HhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHH
Q 046694 10 TRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKK 86 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 86 (118)
.++..++.|..+|+.-. -| --..|---+..=-..|++.-|-++|.+=.+ ..|+...|.+.|+-=.+-..++.|..
T Consensus 118 mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555432 11 112233333333445666666666665443 46777777777777777777777777
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 87 FFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 87 ~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
+|+++.- +.|+..+|--..+.=-++|.
T Consensus 196 IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 196 IYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 7777754 34666666655555555543
No 263
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.51 E-value=3.7 Score=29.95 Aligned_cols=77 Identities=9% Similarity=0.089 Sum_probs=55.7
Q ss_pred CchHHHHHHHhcCCHHHHHHHhhhCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 046694 1 MIEPRLDFYTRTGRIDLANKIFDRLPVK---DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77 (118)
Q Consensus 1 t~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 77 (118)
+|=.||+-|...+.+++.++.+++|..| -...|..-|++=..-+++..+..+|.+...... +..-|..-|+-.-+
T Consensus 44 S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~YIRr 121 (660)
T COG5107 44 SYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLEYIRR 121 (660)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHHHHHh
Confidence 3567888888888888889999988866 445777788877777888888888888876644 35555555554444
Q ss_pred CC
Q 046694 78 GG 79 (118)
Q Consensus 78 ~~ 79 (118)
..
T Consensus 122 ~n 123 (660)
T COG5107 122 VN 123 (660)
T ss_pred hC
Confidence 33
No 264
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.43 E-value=3.6 Score=23.54 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=32.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 046694 27 VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 73 (118)
.|.+....+.+++|-+.+++..|.++|+-.+.. +.+....|..+++
T Consensus 42 VP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 42 VPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 688899999999999999999999999998754 2222336665554
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.81 E-value=7.2 Score=26.02 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=55.2
Q ss_pred HhcCCHHHHHHHhhhCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcc--HHHHHHHHHHHhcC--
Q 046694 10 TRTGRIDLANKIFDRLPVK------DSASWITLILGYGMLGELDVAINLFEAMRED-GVEYY--PVSHIGVLTACSLG-- 78 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~--~~~~~~ll~~~~~~-- 78 (118)
.+.|++++|.+.|+.+... ...+--.++.++-+.++.++|+..+++..+. +-.|| -+.|...+..+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4679999999999988732 3445556778888999999999999999764 33443 45555555544422
Q ss_pred --CChhhHHHHHHHH
Q 046694 79 --GLVEKGKKFFDEM 91 (118)
Q Consensus 79 --~~~~~a~~~~~~m 91 (118)
++..-+...+..|
T Consensus 125 ~~rDq~~~~~A~~~f 139 (254)
T COG4105 125 VTRDQSAARAAFAAF 139 (254)
T ss_pred cccCHHHHHHHHHHH
Confidence 3444444444444
No 266
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=86.50 E-value=3.1 Score=23.73 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
.++..+...+.+-.|.++++++++.+..++..|.-..|+.+.+.|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 345555555666677777777777766667777666677777766654
No 267
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=86.29 E-value=3 Score=21.66 Aligned_cols=49 Identities=6% Similarity=-0.065 Sum_probs=29.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 046694 28 KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77 (118)
Q Consensus 28 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 77 (118)
|....++.++...++..-.++++..+++..++|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666654 455666666665555
No 268
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=86.03 E-value=4.5 Score=22.93 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=36.9
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCCC--HhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCC
Q 046694 3 EPRLDFYTRTGRIDLANKIFDRLPVKD--SASWITLILGYGMLG--ELDVAINLFEAMREDGV 61 (118)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~ 61 (118)
..++..|...+++++|..-+.++..|+ ...-..+|..+...+ .-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 356778888899999999999887652 122233333333332 45566666677665554
No 269
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=85.84 E-value=5.8 Score=23.97 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 51 NLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
++.+.+++.|++++..= ..+++.+.+.++.-.|.++++++.+.+...+..|.=.-++.+...|-+
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 34445566666654322 234555555566667777777777766666666655566666666543
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.77 E-value=1.2 Score=19.74 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=15.0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHH
Q 046694 28 KDSASWITLILGYGMLGELDVAI 50 (118)
Q Consensus 28 ~~~~~~~~li~~~~~~~~~~~a~ 50 (118)
.|...|+.+-..|...|++++|.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 36666666666666667666664
No 271
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=85.65 E-value=5.4 Score=24.10 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=46.2
Q ss_pred HHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 17 LANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 17 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
++...+.+-.-+-...=..++..+...+.+-.|.++++++++.+...+..|.=..|+.+...|-+.
T Consensus 7 ~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 344444443323333445677888888888999999999999888887777777777777776553
No 272
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.63 E-value=8.7 Score=25.80 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHhcCCChhhHHHHHHHHhh-cCCCcc-HHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGV--EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA-RNVKPT-ETHYACMV 107 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~-~~t~~~li 107 (118)
.|+.-+..+ +.|++..|...|....+..- ......+-.|-.++...|+.+.|..+|..+.+ .+-.|- +...--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 588888766 67889999999999987632 12345666789999999999999999999944 443443 35666666
Q ss_pred HHHHHccccc
Q 046694 108 YLLIKYNQKA 117 (118)
Q Consensus 108 ~~~~~~g~~~ 117 (118)
.+..+.|+.+
T Consensus 223 ~~~~~l~~~d 232 (262)
T COG1729 223 VSLGRLGNTD 232 (262)
T ss_pred HHHHHhcCHH
Confidence 6666666543
No 273
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=85.55 E-value=3.6 Score=21.35 Aligned_cols=52 Identities=12% Similarity=-0.016 Sum_probs=43.1
Q ss_pred CCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHc
Q 046694 61 VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113 (118)
Q Consensus 61 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~ 113 (118)
+.|+...++-+++..++-.-++.+...+++..+.|. .+..+|.--++.++|.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 457788899999999999999999999999999886 4788888888877764
No 274
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.55 E-value=1.4 Score=18.54 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=12.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 046694 38 LGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~ 58 (118)
..+.+.|++++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 344556666666666666654
No 275
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.46 E-value=7.5 Score=26.59 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=54.9
Q ss_pred HHHHHhcCCHHHHHHHhhhCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 6 LDFYTRTGRIDLANKIFDRLPV---KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
-.+|++.|.++.|++=.+.-.. .-..+|..|=.+|...|++++|.+.|++-.+ +.|+-.+|-.=|+..-
T Consensus 122 AAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 122 AAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 4688999999999887775542 3556899999999999999999999998665 5787777777666654
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.35 E-value=12 Score=27.13 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=60.4
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
|..|-....+.|+++-|++.|.+.. -|..++-.|.-.|+.+...++-+.....|- +|....++.-.|++
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDV 418 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCH
Confidence 7788889999999999999998776 377788888889999888888877776552 56666667777888
Q ss_pred hhHHHHHHHH
Q 046694 82 EKGKKFFDEM 91 (118)
Q Consensus 82 ~~a~~~~~~m 91 (118)
++..+++.+-
T Consensus 419 ~~cv~lL~~~ 428 (443)
T PF04053_consen 419 EECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 8887776553
No 277
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=85.14 E-value=3.6 Score=20.99 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=33.2
Q ss_pred CHHHHHHHhhhCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046694 14 RIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 14 ~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (118)
.++.+..+.+.++ ..|-.---.+|.|+...|++++|.+..+++.+
T Consensus 5 ~~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555666666665 33666666899999999999999999999865
No 278
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.09 E-value=2.9 Score=19.87 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=17.3
Q ss_pred HHHHHhcCCChhhHHHHHHHHhhcC
Q 046694 71 VLTACSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~g 95 (118)
+-++|.+.|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777776544
No 279
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.82 E-value=5.3 Score=22.67 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=35.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 046694 27 VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT 73 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 73 (118)
.|+...-.+.+++|-+.+++..|.++|+-.+.. +..+...|..++.
T Consensus 39 VP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 39 VPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 678889999999999999999999999988743 2224446665554
No 280
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.57 E-value=13 Score=26.98 Aligned_cols=48 Identities=15% Similarity=-0.011 Sum_probs=31.7
Q ss_pred HHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046694 9 YTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAM 56 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 56 (118)
+...++.++|.--|..-. .| +...|.-++..|...|.+.+|.-+-++.
T Consensus 344 L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 345567777777776432 43 7777888888888888777766555443
No 281
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=84.53 E-value=3.3 Score=23.63 Aligned_cols=9 Identities=0% Similarity=0.608 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 046694 84 GKKFFDEMQ 92 (118)
Q Consensus 84 a~~~~~~m~ 92 (118)
|.++++.+.
T Consensus 19 a~ei~~~l~ 27 (116)
T cd07153 19 AEEIYERLR 27 (116)
T ss_pred HHHHHHHHH
Confidence 333333333
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.52 E-value=2.3 Score=18.17 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
+|..+-..|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555666666666666666654
No 283
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.49 E-value=6 Score=24.82 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=30.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 27 VKDSASWITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
.|+..+|..++..+...|+.++|.+..+++..-
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999998764
No 284
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=84.38 E-value=17 Score=27.98 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 046694 66 VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112 (118)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~ 112 (118)
.-|+.|.+-|.+.|.+|+|..+|++-... ..+..-|+.+.++|..
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 44666777777777777777777765442 2234445555555543
No 285
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=84.26 E-value=6.8 Score=24.30 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=43.7
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 54 EAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 54 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
+.+++.|++++..=- .+++.+...+..-.|.++++.+.+.+..++..|.---|+.+.+.|-+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 335677877665443 44555555566678999999998888888877777777777777754
No 286
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=84.11 E-value=1.6 Score=26.23 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=23.4
Q ss_pred cCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 046694 77 LGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110 (118)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~ 110 (118)
+-|.-..|.++|++|.+.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44566667899999999988876 477776654
No 287
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.74 E-value=9.3 Score=24.62 Aligned_cols=70 Identities=9% Similarity=-0.047 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhh---cCCCccHHHHHHHHHHHHHccccc
Q 046694 47 DVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA---RNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
++|.+.|-.+...+.--++..-..+-.-|. ..+.+++..++-...+ .+-.+|+..+.+|...|.+.|+.+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 567777777776665444444444444444 6788888888877633 233678888888888888887765
No 288
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=83.52 E-value=16 Score=28.34 Aligned_cols=84 Identities=13% Similarity=-0.005 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 9 YTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAIN--LFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
+-..|..++|...|..-. .| ++.+-+++-..+.+.|+...|.. ++.++.+.+ +-+...|-.+-..+-+.|+.+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHH
Confidence 344577788877776443 34 77788899999999999888888 999888754 3378999999999999999999
Q ss_pred HHHHHHHHhh
Q 046694 84 GKKFFDEMQA 93 (118)
Q Consensus 84 a~~~~~~m~~ 93 (118)
|.+.|..-..
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 9999988744
No 289
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=83.32 E-value=3.7 Score=23.69 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=18.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 36 LILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
++......+.+-.|.++++.|++.+..++..|.=.-|+.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33444444444445555555554444444444433344444433
No 290
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=82.70 E-value=11 Score=24.77 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----HcCC-CccHHHHHHHHHHHhcCCChhhHHHH
Q 046694 36 LILGYGMLGELDVAINLFEAMR----EDGV-EYYPVSHIGVLTACSLGGLVEKGKKF 87 (118)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~ 87 (118)
+-..|.+.|++++|.++|+.+. ++|- .+...+...+..++.+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3345555555555555555552 2232 23344444445555555555544443
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.57 E-value=9.2 Score=26.37 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCccHHHH
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMR-----EDGVEYYPVSH 68 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~~~ 68 (118)
.-..|..+|.+.+|..+.+... +-+...|-.+|..++..|+--.|.+-++++. +-|+..+-..+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3457889999999999998776 3377789999999999999888888888874 34776665444
No 292
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.82 E-value=6.4 Score=21.37 Aligned_cols=46 Identities=13% Similarity=-0.086 Sum_probs=33.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhcCCChhhHHHH
Q 046694 42 MLGELDVAINLFEAMREDGVEYY--PVSHIGVLTACSLGGLVEKGKKF 87 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~ 87 (118)
..+.-++|+..|....+.-..|. -.++..++.+++..|..+++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888866543332 36777888889888888776654
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.76 E-value=3.1 Score=17.62 Aligned_cols=24 Identities=33% Similarity=0.355 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 34 ITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
..+-..+...|++++|.+.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444555555555555555544
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.65 E-value=24 Score=27.85 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 6 LDFYTRTGRIDLANKIFDRLPVKDSASWITLILGY----GMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
|....+...++-|+.+-..-..+ ..+-..++..| -+.|++++|..-|-+-... ++|+ -++.-|.++..+
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHH
Confidence 33444444555555554433322 12222222222 2346666666666554322 2222 123344444555
Q ss_pred hhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccccc
Q 046694 82 EKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~ 117 (118)
.+-..+++.+.+.|+. +..+-+.|+.+|.+.++.+
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 5555566666665554 4444555666666665543
No 295
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=81.58 E-value=22 Score=27.37 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=60.4
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCCCHh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCC-c
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSA-------SWITLILGYGMLGELDVAINLFEAMRED----------GVE-Y 63 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~----------~~~-p 63 (118)
|..+-..|-..|+++.|+.+|++-..-+-. +|-..-..=.++.+++.|+++.+..... |-. +
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 566778888999999999999987643322 3333333344455677777777665321 111 1
Q ss_pred c------HHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCC
Q 046694 64 Y------PVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97 (118)
Q Consensus 64 ~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 97 (118)
. ...|+-.++.--..|-++....+|+.+.+..+.
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 1 233444455555667888888888888776654
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.53 E-value=23 Score=27.93 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH----hhcCCCccHHHHHHHHH
Q 046694 33 WITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM----QARNVKPTETHYACMVY 108 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~g~~~~~~t~~~li~ 108 (118)
+--+|..+.+..+++.+..+.+..-+. ++.-|-.+|+.+++.+.++...+...+. ......|... +++
T Consensus 708 ~~dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~----VL~ 779 (933)
T KOG2114|consen 708 GQDLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLH----VLQ 779 (933)
T ss_pred hHHHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHH----HHH
Confidence 445677778888888888888776544 7888999999999999777666555544 3344444443 455
Q ss_pred HHHHccc
Q 046694 109 LLIKYNQ 115 (118)
Q Consensus 109 ~~~~~g~ 115 (118)
.++|++.
T Consensus 780 ~Lakn~~ 786 (933)
T KOG2114|consen 780 ILAKNGT 786 (933)
T ss_pred HHhcCCc
Confidence 5555543
No 297
>PRK09462 fur ferric uptake regulator; Provisional
Probab=81.48 E-value=9.3 Score=23.00 Aligned_cols=34 Identities=0% Similarity=-0.089 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcc
Q 046694 81 VEKGKKFFDEMQARNVKPTETHYACMVYLLIKYN 114 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g 114 (118)
.-.|.++++.+.+.+...+..|.---|+.+.+.|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444444444333344444433
No 298
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=81.44 E-value=2.1 Score=22.64 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=27.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 41 GMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
...++.+.+.+++++..+.|+.|.......+..+.-+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888877777776666655443
No 299
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=80.91 E-value=2.2 Score=24.60 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=34.7
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 70 GVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.+++.+...+..-.|.++++.|.+.|...+..|.=--|+.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45666666666778899999998888888888777777888777754
No 300
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=80.87 E-value=13 Score=25.99 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCHH---HHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 046694 4 PRLDFYTRTGRID---LANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV 71 (118)
Q Consensus 4 ~ll~~~~~~~~~~---~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 71 (118)
.++..+.+.++.. +|..+++... .| |...=-.+++.|...|..+.|.+.|..+.-..+.-|...|..+
T Consensus 185 ~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~ 258 (365)
T PF09797_consen 185 SLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLIL 258 (365)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHH
Confidence 3455555555544 5666666543 22 4444456778888899999999999888655566666555543
No 301
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.08 E-value=8.4 Score=28.65 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=40.7
Q ss_pred HHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 15 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
......++.+.+-++-..-.-++..|.+.|..+.|.++.+.+-..- ....-|...+..+.++|+.+....+-..+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4445566666665555566778889999999999999999884432 23467889999999999999888777777544
Q ss_pred CCC
Q 046694 95 NVK 97 (118)
Q Consensus 95 g~~ 97 (118)
.+.
T Consensus 468 ~~~ 470 (566)
T PF07575_consen 468 YCN 470 (566)
T ss_dssp ---
T ss_pred Hhc
Confidence 433
No 302
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=80.02 E-value=16 Score=25.42 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 046694 50 INLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112 (118)
Q Consensus 50 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~ 112 (118)
.++++.|+..++.|.-..|.-+.-.+...=.+.....+++.+.... .-+..|+.+||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHH
Confidence 4678888888999999999988888888888999999999986633 336777777764
No 303
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.00 E-value=20 Score=25.92 Aligned_cols=97 Identities=21% Similarity=0.116 Sum_probs=54.8
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC-----CCCHh--hHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCccHHHHHH-
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP-----VKDSA--SWITLILGYGML---GELDVAINLFEAMREDGVEYYPVSHIG- 70 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~--~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~- 70 (118)
+.+.|...|..|+++.|+++.+.-+ +++.. .--.|+.+-+.. -++..|...-.+ ..++.||.+.-..
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~pdlvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCccchHHHH
Confidence 3466777777888888887777544 23222 111222222111 234444444433 2334566544333
Q ss_pred HHHHHhcCCChhhHHHHHHHHhhcCCCccH
Q 046694 71 VLTACSLGGLVEKGKKFFDEMQARNVKPTE 100 (118)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (118)
.-+++.+.|++.++-++++.+=+..-.|++
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 367778888899988888888666555553
No 304
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=79.95 E-value=3.1 Score=24.50 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 046694 42 MLGELDVAINLFEAMREDGVEYYPVSHIG 70 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 70 (118)
-.|+...|.++++.++.+|++|....|..
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 46999999999999999999998877654
No 305
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.87 E-value=29 Score=27.62 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=67.8
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCCC-------HhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCccHHHHHH--
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVKD-------SASWITLILGYGMLGEL--DVAINLFEAMREDGVEYYPVSHIG-- 70 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~-- 70 (118)
|..|+..|...|+.++|.++|.+....+ ...+.-++.-..+.+.. +-+++.-+...+..-......|..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5678888999999999999987765311 12233344444444443 444444444433211111111111
Q ss_pred ----------HHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHc
Q 046694 71 ----------VLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKY 113 (118)
Q Consensus 71 ----------ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~ 113 (118)
.+-.|.+....+.+..+++.+....-.++..-.+.++..|++.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 2334566677788888888887766677888888888888764
No 306
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=79.66 E-value=3.2 Score=30.05 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHH
Q 046694 44 GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102 (118)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t 102 (118)
..+++|+++.++-...|.+.+ -|-...|.+++.++.++|+.||..|
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~S-------------Igl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 217 ETLDEALALAEEATAAGEPIS-------------IGLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceE-------------EEEeccHHHHHHHHHHcCCCCceec
Confidence 456677776666666554322 2344455666777777777666544
No 307
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.57 E-value=21 Score=25.84 Aligned_cols=78 Identities=22% Similarity=0.160 Sum_probs=47.2
Q ss_pred cCCHHHHHHHhhhCC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHHHH
Q 046694 12 TGRIDLANKIFDRLP-VK--DSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGKKF 87 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 87 (118)
.|+++.|.+-|+.|. .| ...-...|+-.--+.|+.+.|.+.-.+--.. -| -.=...+.+...|..|+++.|.++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 588888888888886 22 2222333444444556666666665554322 22 234456677777888888888887
Q ss_pred HHHH
Q 046694 88 FDEM 91 (118)
Q Consensus 88 ~~~m 91 (118)
.+.-
T Consensus 211 vd~~ 214 (531)
T COG3898 211 VDAQ 214 (531)
T ss_pred HHHH
Confidence 7765
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.49 E-value=3.6 Score=30.33 Aligned_cols=83 Identities=11% Similarity=0.058 Sum_probs=51.6
Q ss_pred HhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHH
Q 046694 10 TRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKK 86 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 86 (118)
...|+++.+........ .....+-.++++..-+.|++++|...-..|..+.++ +...........-..|-+|++.-
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence 44566666666664443 335556677777777778888888888887777665 33333333333345566777777
Q ss_pred HHHHHhh
Q 046694 87 FFDEMQA 93 (118)
Q Consensus 87 ~~~~m~~ 93 (118)
.++++..
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 7777644
No 309
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.48 E-value=18 Score=25.19 Aligned_cols=90 Identities=11% Similarity=-0.055 Sum_probs=65.7
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH-HHHHhc
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV-LTACSL 77 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~ 77 (118)
+++.+.-+.+..++++|+++...-. .| +...-+.+-..|-...++..|-+++.++-.. .|...-|..- -..+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 4667777788888999988886554 23 6667777888888888999999999988654 4666555543 445567
Q ss_pred CCChhhHHHHHHHHhh
Q 046694 78 GGLVEKGKKFFDEMQA 93 (118)
Q Consensus 78 ~~~~~~a~~~~~~m~~ 93 (118)
++.+..|.++...|.+
T Consensus 91 A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLD 106 (459)
T ss_pred hcccHHHHHHHHHhcC
Confidence 7777788887777755
No 310
>COG5210 GTPase-activating protein [General function prediction only]
Probab=79.45 E-value=11 Score=27.58 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHH
Q 046694 47 DVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109 (118)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~ 109 (118)
+..-+++.+|.+.|+.+...++..++..+.+.-.++.+.++++.+.-.|+.-....+.+++..
T Consensus 359 ~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~ 421 (496)
T COG5210 359 ELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 344567888899999999999999999999999999999999999887876655555555443
No 311
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=78.99 E-value=11 Score=22.20 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHHHHHHH
Q 046694 30 SASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGKKFFDE 90 (118)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (118)
-.-|--+--.|+..-+ .+.++|+.|.+.|+-- -..-|...-..+...|++++|.++|..
T Consensus 65 D~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 65 DERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3344444444555433 9999999999988765 567788888899999999999999874
No 312
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.09 E-value=11 Score=21.73 Aligned_cols=75 Identities=19% Similarity=0.084 Sum_probs=46.2
Q ss_pred HHHHHHHhhhCC-CCCHhhHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 15 IDLANKIFDRLP-VKDSASWITLI--LGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 15 ~~~a~~~~~~m~-~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
.++|..+-+-+. .++..-.-.|| ..+.+.|++++|+.+...+ .-||...|-++-. .+.|..+....-+-+|
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 456666666554 22222233333 4566678888888877665 3577777776643 4677777777767677
Q ss_pred hhcC
Q 046694 92 QARN 95 (118)
Q Consensus 92 ~~~g 95 (118)
...|
T Consensus 95 a~sg 98 (115)
T TIGR02508 95 AASG 98 (115)
T ss_pred HhCC
Confidence 6655
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.00 E-value=25 Score=25.88 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=54.9
Q ss_pred hHHHHHHHH--HhcCCHHHHHHHHHHHHHc--CCCccH------------HHHHHHHHHHhcCCChhhHHHHHHHHhh--
Q 046694 32 SWITLILGY--GMLGELDVAINLFEAMRED--GVEYYP------------VSHIGVLTACSLGGLVEKGKKFFDEMQA-- 93 (118)
Q Consensus 32 ~~~~li~~~--~~~~~~~~a~~~~~~m~~~--~~~p~~------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~-- 93 (118)
.|-.+..+. -+.+.+.+|++.+..-.++ +-+|.. .-=+...+++.+.|+++++..++++|..
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344444433 2446788888888776554 333322 2223457778899999999988888744
Q ss_pred --cCCCccHHHHHHHHHHHHHc
Q 046694 94 --RNVKPTETHYACMVYLLIKY 113 (118)
Q Consensus 94 --~g~~~~~~t~~~li~~~~~~ 113 (118)
+...-+..+|+-++-.++++
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHH
Confidence 44558999999988777765
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=77.10 E-value=35 Score=27.38 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=32.6
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCC-----------CCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPV-----------KDS-ASWITLILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~-----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (118)
|..|...|.+.+++|-|.-.+..|+. .|. ..=.-.-..-...|++++|..+|.+.++
T Consensus 760 W~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 760 WDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 67777888888888877777766651 011 1111111222345667777777666654
No 315
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=77.07 E-value=1.7 Score=26.11 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=25.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 046694 41 GMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75 (118)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 75 (118)
-+.|.-..|..+|.+|.++|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345677889999999999999887 466666543
No 316
>PRK15331 chaperone protein SicA; Provisional
Probab=76.47 E-value=16 Score=22.80 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=39.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcC
Q 046694 39 GYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (118)
.+-..|++++|..+|.-+--.+. -+..-+..+-.++-..+++++|...|.......
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34467999999999999976432 133334445555556789999999999874443
No 317
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=75.61 E-value=20 Score=23.53 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=61.7
Q ss_pred CHHHHHHHhhhCCC-----------CCHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCC-ccHHHHHHHH
Q 046694 14 RIDLANKIFDRLPV-----------KDSASWITLILGYGMLG---------ELDVAINLFEAMREDGVE-YYPVSHIGVL 72 (118)
Q Consensus 14 ~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~-p~~~~~~~ll 72 (118)
..+.|+.+...|-- ....-|..+-.+|++.| +.+....+++-..+.|++ .=+..|+.+|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 46788999988862 26667889999999997 577788888888888876 3567788888
Q ss_pred HHHhcCCChhhHHHHHHHHh
Q 046694 73 TACSLGGLVEKGKKFFDEMQ 92 (118)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~ 92 (118)
+--.-.-+++...+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 77677778888888887764
No 318
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.57 E-value=28 Score=25.20 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP------VKDSASWITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
-+-.-|..+|+++.|.+.|-+.+ ..-+..|-.+|..-.-.|+|..+...-.+-.+.
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 35567889999999999998865 235667888888888889999888888887654
No 319
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.41 E-value=24 Score=24.30 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCC
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPVK----DSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGG 79 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 79 (118)
|..+|...|+.+.|..+++.++.. ....-..-|..+.+.....+...+-.+... .| |...=-.+-..+...|
T Consensus 174 la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g 250 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVG 250 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 556778888888888888888732 222222234444444444444444444433 24 5555556677777888
Q ss_pred ChhhHHHHHHHH--hhcCCCccHHHHHHHHHHHHHcc
Q 046694 80 LVEKGKKFFDEM--QARNVKPTETHYACMVYLLIKYN 114 (118)
Q Consensus 80 ~~~~a~~~~~~m--~~~g~~~~~~t~~~li~~~~~~g 114 (118)
+.+.|.+.+=.+ .++|.. |...=..|++.+.--|
T Consensus 251 ~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 251 RNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 888887666655 334444 3333344555444333
No 320
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.13 E-value=11 Score=24.87 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=35.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCC---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPV---------KDSASWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
|-..|.+.|++++|.++|+.+.. ....+-..+..++.+.|+.+..+.+--+|.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45678899999999999987731 133344455566666677777776665553
No 321
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=75.03 E-value=26 Score=24.66 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHhhhCC-------CCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHH-----cCCCccH
Q 046694 7 DFYTRTGRIDLANKIFDRLP-------VKDSASWIT--LILGYGMLGELDVAINLFEAMRE-----DGVEYYP 65 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~-------~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~ 65 (118)
...-+.++.++|.++.+++. .|+.+.|.. +...+...|+..++.+++++.++ .|++|++
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 33344556677777776664 445555443 33444555777777777777766 5666643
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=74.19 E-value=33 Score=25.67 Aligned_cols=90 Identities=9% Similarity=-0.090 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCC--CH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCc----cHHHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVK--DS---ASWITLILGYGMLGELDVAINLFEAMREDG---VEY----YPVSHIGV 71 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p----~~~~~~~l 71 (118)
.|+.-|.+.+++++|..++..|.-. .. .+-+.+.+...+..--++....++.....= .+| ...-|..-
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~ 492 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDP 492 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 4788899999999999999999722 22 244455566666665555555555554321 112 12234443
Q ss_pred HHHH--------hcCCChhhHHHHHHHHhh
Q 046694 72 LTAC--------SLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 72 l~~~--------~~~~~~~~a~~~~~~m~~ 93 (118)
+..| .+.+++++|.-+--++.+
T Consensus 493 V~~~aRRfFhhLLR~~rfekAFlLAvdi~~ 522 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQRFEKAFLLAVDIGD 522 (545)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 3333 355677776665555433
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.14 E-value=4.8 Score=15.72 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 33 WITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
|..+-..+...+++++|...|++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555566655555543
No 324
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=73.03 E-value=18 Score=22.49 Aligned_cols=27 Identities=7% Similarity=0.319 Sum_probs=17.3
Q ss_pred HHHHHHhh-cCCCccHHHHHHHHHHHHH
Q 046694 86 KFFDEMQA-RNVKPTETHYACMVYLLIK 112 (118)
Q Consensus 86 ~~~~~m~~-~g~~~~~~t~~~li~~~~~ 112 (118)
++++.+.+ .|+.|...+...++..+++
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~ 179 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFAR 179 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHh
Confidence 45555553 6777777777777666654
No 325
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.02 E-value=25 Score=25.09 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=39.0
Q ss_pred HHHHhcCCHHHHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 046694 7 DFYTRTGRIDLANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAM 56 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 56 (118)
+-|.+.|++++|+..|..-. .| |.++|..--.+|.+...+..|..=-...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 35788999999999997654 45 8899999999999988887666544443
No 326
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=72.79 E-value=30 Score=24.26 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=37.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 046694 41 GMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLI 111 (118)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~ 111 (118)
.|..++-...++++.+.+.+ ...-..+.++ .-.|+.+.-...++.+.+.|+.++....+.|.+.++
T Consensus 287 lK~r~~y~~~kfvd~L~r~d----~e~~~~L~~a-i~~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 287 LKARDFYSWPKFVDFLARRD----PEISLQLTDA-ILNGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HhhhhhcchHHHHHHHhccC----hHHHHHHHHH-HHcCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 33434444555555554431 2333444444 334666666667777777777777777777776654
No 327
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.64 E-value=20 Score=22.23 Aligned_cols=69 Identities=17% Similarity=0.016 Sum_probs=45.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH-HHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 046694 38 LGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV-LTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~ 110 (118)
..-.+.++.+++..+++-|+-- +|.....-.+ --.+.+.|++.+|.++|+++.+.. |...-.-.|+-.|
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~C 87 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALC 87 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHH
Confidence 3445568999999999999864 4544333332 223458899999999999996654 3333334444433
No 328
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=72.44 E-value=32 Score=24.47 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHH--hc---CCChhhHHHHHHHHhhcCCCccHHHHHHHH
Q 046694 34 ITLILGYGMLGELDVAINLFEAMREDG-VEYYPVSHIGVLTAC--SL---GGLVEKGKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~--~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
..++-+|-...+++...++.+.|.... .+.-........-++ -+ .|+-++|.+++..+....-.+++.|+..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 355557888999999999999998652 111111111122222 24 899999999999976666777888888777
Q ss_pred HHHH
Q 046694 108 YLLI 111 (118)
Q Consensus 108 ~~~~ 111 (118)
+.|-
T Consensus 225 RIyK 228 (374)
T PF13281_consen 225 RIYK 228 (374)
T ss_pred HHHH
Confidence 7664
No 329
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=71.96 E-value=13 Score=20.31 Aligned_cols=49 Identities=14% Similarity=0.037 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
....+-......|..+.|..+++.+. . +|+ -|..+++++-..|.-..|.
T Consensus 34 d~e~I~a~~~~~G~~~aa~~Ll~~L~-r--~~~--Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 34 DKERIQAAENNSGNIKAAWTLLDTLV-R--RDN--WLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-c--cCC--hHHHHHHHHHHcCCHHHHH
Confidence 34444555556688888888888887 2 233 4566777777776655554
No 330
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.82 E-value=17 Score=21.10 Aligned_cols=76 Identities=12% Similarity=-0.035 Sum_probs=40.9
Q ss_pred CHHHHHHHhhhCCC-CCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHH
Q 046694 14 RIDLANKIFDRLPV-KDSASWIT--LILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDE 90 (118)
Q Consensus 14 ~~~~a~~~~~~m~~-~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 90 (118)
+.++|..+.+-+.. ++..-.-. -+..+.+.|++++|+. .- ...--||...|-++-. .+.|..+.+...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl---~~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALL---LP-QCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH---HH-TTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH---hc-ccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 35667666665542 22222223 3355667788888821 11 1123477777766643 477888888888887
Q ss_pred HhhcC
Q 046694 91 MQARN 95 (118)
Q Consensus 91 m~~~g 95 (118)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 75555
No 331
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.74 E-value=28 Score=23.58 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=51.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEY---YPVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
...+|..+.+.+.+.|.++.|...+.++...+..+ +....-.-.+.....|+-++|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55678888899999999999999999998754222 445555667777888999999998888766
No 332
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.95 E-value=10 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=26.0
Q ss_pred cCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046694 12 TGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEA 55 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 55 (118)
-|.+++|+++|-++..+|. .|..+.+.|+|-.+.++++.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc
Confidence 3778888888888876654 34555666666666655543
No 333
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=70.83 E-value=7.6 Score=28.51 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHH
Q 046694 44 GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102 (118)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t 102 (118)
.++++|+...++-++.+-..+ -|-+-.+.+++.++.++|+.||..|
T Consensus 208 ~~ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 208 DSLDEALARAEEAKAEGKPIS-------------IGLLGNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred CCHHHHHHHHHHHHHcCCceE-------------EEeeccHHHHHHHHHHcCCCCCCcC
Confidence 356666666666655543322 2334445566666666666665443
No 334
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.80 E-value=25 Score=22.54 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCcc-------HHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 46 LDVAINLFEAMREDGVEYY-------PVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
++.|+.+|+...+.--.|. ...--..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 6889999998876532331 12233456788899999999999999865
No 335
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=70.57 E-value=13 Score=19.04 Aligned_cols=47 Identities=11% Similarity=0.081 Sum_probs=24.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh-----cCCChhhHHHHH
Q 046694 42 MLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS-----LGGLVEKGKKFF 88 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-----~~~~~~~a~~~~ 88 (118)
+.|++-+|.++++++=...-.|....+-.+|.... +.|+.+.|.+++
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 46667777777776632211234444555554443 556666666553
No 336
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=70.55 E-value=30 Score=23.42 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 046694 35 TLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
..+......|++..|+++..+..
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444455555555555555554
No 337
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.36 E-value=11 Score=20.91 Aligned_cols=64 Identities=11% Similarity=-0.091 Sum_probs=41.0
Q ss_pred HHHHhhhCCCCCHhhHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHH
Q 046694 18 ANKIFDRLPVKDSASWITLILGYG---MLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKK 86 (118)
Q Consensus 18 a~~~~~~m~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 86 (118)
+.++++.+.+.++.|.+..=..-+ ..|+.+.|.++++.+. .| +.-|..+++++-+.|.-+.|.+
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 445666666665555553333333 5688899999998887 42 3457778888877776655543
No 338
>PRK05414 urocanate hydratase; Provisional
Probab=70.07 E-value=8.3 Score=28.45 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHH
Q 046694 44 GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102 (118)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t 102 (118)
.++++|++..++-++.+-+.+ -|-+-.+.++++++.++|+.||..|
T Consensus 217 ~~Ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~~~i~pDlvt 262 (556)
T PRK05414 217 DDLDEALALAEEAKAAGEPLS-------------IGLLGNAADVLPELVRRGIRPDLVT 262 (556)
T ss_pred CCHHHHHHHHHHHHHcCCceE-------------EEEeccHHHHHHHHHHcCCCCCccC
Confidence 356666666666655543322 2334445666666666666665543
No 339
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=70.01 E-value=51 Score=25.79 Aligned_cols=71 Identities=10% Similarity=-0.019 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC------CCCHhhHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCccHHHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP------VKDSASWITLILGYGMLGELD------VAINLFEAMREDGVEYYPVSHIGV 71 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~p~~~~~~~l 71 (118)
+|+.+|..+|++-++..+++... +.=...||..|+.+.+.|.++ .|-+.+++-+ +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 57888888888888888887664 224557888888888888643 3333333332 44566777766
Q ss_pred HHHHhc
Q 046694 72 LTACSL 77 (118)
Q Consensus 72 l~~~~~ 77 (118)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 340
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=69.16 E-value=22 Score=28.75 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=32.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH--HHhcCCChhhHHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLT--ACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~m 91 (118)
|...|..+..+|...|....|+++|.+...- .|+ .+|...-. .-+..|...++...++..
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666777777777777777777777665432 332 12222111 123445555665555554
No 341
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=68.99 E-value=25 Score=21.92 Aligned_cols=77 Identities=13% Similarity=-0.013 Sum_probs=52.0
Q ss_pred HHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 15 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
...+.++=-+|-.+=...+..++..+...|++-+|+++.+.... .+......++++..+.+|...-..+|+-+.++
T Consensus 74 ~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 74 YPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33444444444333224577788888899999999999987532 23334466888888888888877777777665
Q ss_pred C
Q 046694 95 N 95 (118)
Q Consensus 95 g 95 (118)
+
T Consensus 150 n 150 (167)
T PF07035_consen 150 N 150 (167)
T ss_pred h
Confidence 5
No 342
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=68.13 E-value=12 Score=24.16 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCC------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLP------------------VKDSASWITLILGYGMLGELDVAINLFEA 55 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 55 (118)
++|-.|.+..++.+..++++.|. .+.-..-|.....|.+.|..+-|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 46778888889999998888764 23556778888899999999999999985
No 343
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.10 E-value=19 Score=20.00 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 48 VAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
.+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +| +.-|...++++.+.|+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEH 81 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCc
Confidence 35677888888874 355555555555457789999999999997 55 3456777777777764
No 344
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.01 E-value=52 Score=27.17 Aligned_cols=50 Identities=14% Similarity=-0.015 Sum_probs=24.0
Q ss_pred HHHhcCCHHHHHHHhhhCCCC-CHh--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 8 FYTRTGRIDLANKIFDRLPVK-DSA--SWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~~~-~~~--~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
+|-.+|+|++|..+-.++..+ |.. +-..|..-+...+++-+|-++..+--
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 344444444444444444422 221 11455555666666666666665543
No 345
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.63 E-value=32 Score=22.49 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=54.8
Q ss_pred HHHHHH--hcCCHHHHHHHhhhCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 5 RLDFYT--RTGRIDLANKIFDRLPVKDSASW-ITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 5 ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
.+.+|- ..+++++|...+-+-..+ .+| .-++.++...|+.+.|+.+++-..-..- +...-...+.. ..++.+
T Consensus 82 ~~~g~W~LD~~~~~~A~~~L~~ps~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 82 FIQGFWLLDHGDFEEALELLSHPSLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHhChHhHHHHHHHhCCCCCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCH
Confidence 444443 346777777777433211 122 2477778888888888888887543221 22222333333 455778
Q ss_pred hhHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 046694 82 EKGKKFFDEMQARNVKPTETHYACMVYLLI 111 (118)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~~~t~~~li~~~~ 111 (118)
.+|..+-+...+.. ....+..++..+.
T Consensus 157 ~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 157 TEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 88877766653311 1345555555554
No 346
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.47 E-value=43 Score=23.65 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHHHH--HHHHHhcCCChhhHHHHHHHHhh-----cCCCccHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMRED---GVEYYPVSHIG--VLTACSLGGLVEKGKKFFDEMQA-----RNVKPTET 101 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~ 101 (118)
....++...-+.++.++|++.++++.+. --.|+.+.|.. +.+.+...|++.++.+++++..+ .|+.|+..
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444555556667999999999999653 23567776655 45666688999999999999876 77887544
Q ss_pred H-HHHHH
Q 046694 102 H-YACMV 107 (118)
Q Consensus 102 t-~~~li 107 (118)
+ |..+-
T Consensus 157 ~~fY~ls 163 (380)
T KOG2908|consen 157 SSFYSLS 163 (380)
T ss_pred hhHHHHH
Confidence 3 33333
No 347
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=66.38 E-value=17 Score=19.00 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=32.0
Q ss_pred hcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHccc
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQ 115 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~ 115 (118)
.-.++.+.+.+++++..+.|+.|.......+..+..+-|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4558999999999999888999888888888887776664
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.13 E-value=33 Score=22.19 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=51.7
Q ss_pred HHHHHHhhhCC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHhcCCChhhHH
Q 046694 16 DLANKIFDRLP-VK--DSASWITLILGYGMLGELDVAINLFEAMRED---GVEYYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 16 ~~a~~~~~~m~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
+.|.+.|-++. .| +...--.-+..|-...+.+++..++-+..+. +-.+|+..+..+...+-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666666665 33 3333444455566688999999999998653 34789999999999999999998875
No 349
>PRK09857 putative transposase; Provisional
Probab=65.92 E-value=40 Score=23.01 Aligned_cols=66 Identities=12% Similarity=-0.037 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 33 WITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
+..++.-..+.++.++..++++.+.+. .+........+..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445665556677777778888777655 333444455666777777777888899999999898866
No 350
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=65.86 E-value=22 Score=20.05 Aligned_cols=62 Identities=16% Similarity=0.062 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC--ChhhHHHHHHHHhhcCC
Q 046694 33 WITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG--LVEKGKKFFDEMQARNV 96 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~ 96 (118)
...++..|...+++++|.+.+.++..... -......++..+...+ .-+....++..+.+.+.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 34577788899999999999999864322 2233334444444432 23344555555554443
No 351
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=65.79 E-value=26 Score=21.91 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCC
Q 046694 51 NLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96 (118)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (118)
++++++.+.|+.|....+..++..+++.=..+.+.++++-+. .|.
T Consensus 150 ~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD~l~-~g~ 194 (214)
T PF00566_consen 150 ELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWDFLL-EGY 194 (214)
T ss_dssp HHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHHHHH-HCT
T ss_pred hhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHHHHH-cCC
Confidence 345556668888888999999999998888899999999444 454
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=65.54 E-value=42 Score=26.94 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHH
Q 046694 10 TRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFD 89 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (118)
...|.+++|..+|.+.+. |..|=+.|-..|+|++|+++-+.=. .+.. ..||-.-..-+-..++.+.|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~D--RiHL-r~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKD--RIHL-RNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcc--ceeh-hhhHHHHHHHHHhhccHHHHHHHHH
Confidence 356888899999987663 5555677778899999999877632 2222 2334334444455667777777766
Q ss_pred H
Q 046694 90 E 90 (118)
Q Consensus 90 ~ 90 (118)
+
T Consensus 883 K 883 (1416)
T KOG3617|consen 883 K 883 (1416)
T ss_pred h
Confidence 5
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.24 E-value=57 Score=24.62 Aligned_cols=87 Identities=15% Similarity=0.136 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 5 RLDFYTRTGRIDLANKIFDRLP--VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
++..|+..-+..-++.+..+|. ..+...|-.+...|..+ ..++...+|.++.+.. .|.+.+..-+-.+...++.+
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEkik~s 148 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEKIKKS 148 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHhchh
Confidence 4455555555555555555554 34667788888888777 6677777777776653 34444444444444447777
Q ss_pred hHHHHHHHHhhc
Q 046694 83 KGKKFFDEMQAR 94 (118)
Q Consensus 83 ~a~~~~~~m~~~ 94 (118)
.+..+|.+...+
T Consensus 149 k~a~~f~Ka~yr 160 (711)
T COG1747 149 KAAEFFGKALYR 160 (711)
T ss_pred hHHHHHHHHHHH
Confidence 777777776544
No 354
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=64.96 E-value=21 Score=21.76 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHH
Q 046694 68 HIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLL 110 (118)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~ 110 (118)
...++. +-+.|-..+...+.++|.+.|+..+..+|+.+++-.
T Consensus 113 lGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 113 LGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 333333 345688999999999999999999999999887654
No 355
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=64.78 E-value=44 Score=23.18 Aligned_cols=37 Identities=14% Similarity=-0.114 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHH
Q 046694 33 WITLILGYGMLGELDVAINLFEAMREDGVE-YYPVSHI 69 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~ 69 (118)
--.+|+.|.+.|.+++|+++....++-..+ |+...+.
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~ 146 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVK 146 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHH
Confidence 346788999999999999999888654322 4543333
No 356
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=64.21 E-value=18 Score=19.99 Aligned_cols=57 Identities=12% Similarity=0.014 Sum_probs=32.2
Q ss_pred HhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 21 IFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 21 ~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
+++.+...++.|-...-..-+..-..+++.++++-+...| ...|..+.+++-..+..
T Consensus 25 v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG----~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 25 LLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRG----PRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhC----hhHHHHHHHHHHhcChH
Confidence 3444444444444444444444556777777777777663 45666666666554443
No 357
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=63.84 E-value=12 Score=16.48 Aligned_cols=25 Identities=4% Similarity=0.267 Sum_probs=17.9
Q ss_pred ChhhHHHHHHHHhhcCCCccHHHHHHH
Q 046694 80 LVEKGKKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~t~~~l 106 (118)
.+|.|..+|++.... .|+..+|...
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 467888888888763 5777777543
No 358
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=63.68 E-value=18 Score=27.88 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC--CCH-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPV--KDS-----------ASWITLILGYGMLGELDVAINLFEAMREDG 60 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~--~~~-----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 60 (118)
++++.....++|++|..+-++.++ +|+ .-|.-.=++|.++|+-.+|.++++++....
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 567778888999999999888872 222 235556678899999999999999986543
No 359
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.67 E-value=26 Score=20.06 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 67 SHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
-|..++.-|-..|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999999966
No 360
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=63.64 E-value=22 Score=21.88 Aligned_cols=43 Identities=9% Similarity=0.143 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 52 LFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 52 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
+|+++....+..++..-..-|....+.++++.|.+++-.+.-.
T Consensus 77 Lfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 77 LFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444454445555555555566667889999999999988554
No 361
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.15 E-value=72 Score=25.04 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHhcCCChhhH------HHHHHHHhhcCCCccHHHHHHH
Q 046694 35 TLILGYGMLGELDVAINLFEAMRED--GVEYYPVSHIGVLTACSLGGLVEKG------KKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a------~~~~~~m~~~g~~~~~~t~~~l 106 (118)
+++.+|..+|++-.+.++++..... |-+.=...||.-|+.+.+.|.++.. .++++. .-+--|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 7999999999999999999999754 4455678899999999999987642 233333 2345577777777
Q ss_pred HHH
Q 046694 107 VYL 109 (118)
Q Consensus 107 i~~ 109 (118)
+++
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 665
No 362
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=63.10 E-value=23 Score=21.56 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 046694 31 ASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC 75 (118)
Q Consensus 31 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 75 (118)
.|-..+..+ -..|-..+...++++|.+.|+..+...|+.+++-.
T Consensus 111 GtlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 111 GTLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred ehhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 344444443 35578888999999999999999999998887643
No 363
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=62.80 E-value=45 Score=22.57 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=45.0
Q ss_pred HHhcCCHHHHHHHhhhC----------------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 046694 9 YTRTGRIDLANKIFDRL----------------PVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVL 72 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m----------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 72 (118)
+...|++.+|..-++.. ..|.+.....++..| ..+++++|.++++++-+.|..|.- ..+.+.
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~F 279 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLF 279 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 44567777776555433 356777777777765 467899999999999999988743 344555
Q ss_pred HHHh
Q 046694 73 TACS 76 (118)
Q Consensus 73 ~~~~ 76 (118)
+++-
T Consensus 280 Rv~K 283 (333)
T KOG0991|consen 280 RVVK 283 (333)
T ss_pred HHHH
Confidence 5543
No 364
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=62.22 E-value=8.3 Score=28.40 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHH
Q 046694 45 ELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102 (118)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t 102 (118)
++++|++..++-++.+-+. .-|-+-.+.++++++.+.|+.||..|
T Consensus 208 ~ldea~~~~~ea~~~~~~~-------------SIg~~GN~ad~~~~l~~~~i~pDl~t 252 (546)
T PF01175_consen 208 DLDEALARAKEARAKKEPL-------------SIGLLGNAADLWEELVERGIIPDLVT 252 (546)
T ss_dssp SHHHHHHHHHHHHHTT--E-------------EEEEES-HHHHHHHHHHTT---SEE-
T ss_pred CHHHHHHHHHHhhccCCee-------------EEEEeccHHHHHHHHHHcCCCCCccc
Confidence 5666666666666554332 22344455666666666666665543
No 365
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=61.90 E-value=23 Score=18.98 Aligned_cols=45 Identities=7% Similarity=-0.102 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLG 78 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (118)
....++..+. .+++.++...+.++...|+.++ .....+.+...+.
T Consensus 7 ~i~~i~~~~~-~~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 7 VIEEILESCL-NGDFKEARKKLYELLVEGYSAS-DILKQLHEVLVES 51 (89)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh
Confidence 3444555443 3588889998888888877644 3344444444444
No 366
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=61.78 E-value=64 Score=24.02 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=58.4
Q ss_pred hcCCHHHHHHHhhhCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhcCCChhhHHHHH
Q 046694 11 RTGRIDLANKIFDRLPVKD-SASWITLILGYGMLGELDVAINLFEAMREDGVEYY-PVSHIGVLTACSLGGLVEKGKKFF 88 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 88 (118)
+.-+.+....+++++.. . ...+..++++....|-.+...-+.+.++...+.+. ....-..+-.....-..+....++
T Consensus 321 R~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~ 399 (574)
T smart00638 321 RTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALF 399 (574)
T ss_pred HhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 34455666666666654 3 67889999999999998888888888887766542 222222223333444555555666
Q ss_pred HHHhhcCCCccHHHHHH
Q 046694 89 DEMQARNVKPTETHYAC 105 (118)
Q Consensus 89 ~~m~~~g~~~~~~t~~~ 105 (118)
+-+....+.+....+..
T Consensus 400 ~l~~~~~~~~~~~l~~s 416 (574)
T smart00638 400 ELAESPEVQKQPYLRES 416 (574)
T ss_pred HHhcCccccccHHHHHH
Confidence 55555556666544443
No 367
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.36 E-value=64 Score=23.88 Aligned_cols=60 Identities=5% Similarity=-0.112 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHcC---CC----------ccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHH
Q 046694 43 LGELDVAINLFEAMREDG---VE----------YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETH 102 (118)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~---~~----------p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t 102 (118)
.|++..|+.++++....+ +. ++...+..++++....+....+..++++|.+.|..|....
T Consensus 213 ~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 213 DGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred CChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 466777777776653211 11 1334455666666555556788889999988888776443
No 368
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=61.34 E-value=33 Score=20.46 Aligned_cols=59 Identities=15% Similarity=0.017 Sum_probs=30.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH-HHHHHhcCCChhhHHHHHHHH
Q 046694 30 SASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIG-VLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~m 91 (118)
..+--++..++.-.|..++|.++++..+ --++-...|. +++.|+++.+-++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~Fk---WG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFK---WGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444555566666666666666655432 1122222222 566666666666655554443
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=61.30 E-value=38 Score=22.92 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=44.0
Q ss_pred hcCCHHHHHHHHHHHHHc-C-----------CCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHH
Q 046694 42 MLGELDVAINLFEAMRED-G-----------VEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTET 101 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 101 (118)
..|+..+|+..++--... | -.|.+...-.++..|.+ +++++|.+++.++-+.|+.|...
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH
Confidence 357788887777665321 2 15777777788888655 88999999999999999998643
No 370
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.25 E-value=74 Score=24.54 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=28.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 42 MLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
+.|+++.|.++..+.. +..-|..+-++....+++..|.+.|..-.+.
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4555555555554422 5566777777777777777777776665443
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.16 E-value=12 Score=15.26 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=13.2
Q ss_pred ChhhHHHHHHHHhhcCCCccHHHHHHHH
Q 046694 80 LVEKGKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
+.+.+..+|+++.+.. +-+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 4555666666654432 23444444443
No 372
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=60.90 E-value=25 Score=18.92 Aligned_cols=31 Identities=6% Similarity=0.020 Sum_probs=21.7
Q ss_pred CCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhc
Q 046694 13 GRIDLANKIFDRLP---VKDSASWITLILGYGML 43 (118)
Q Consensus 13 ~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~ 43 (118)
=+.+.|..++..++ ++.+..||++-+-+.++
T Consensus 11 lDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 35667777777776 44777888887766655
No 373
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=60.86 E-value=36 Score=20.80 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=45.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 38 LGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
-+.+..|+++.|++.|.+-..- .+-....||.--.++--.|+.++|..=+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567789999999999997754 234788999999999999999999888877644
No 374
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.02 E-value=42 Score=22.60 Aligned_cols=26 Identities=4% Similarity=0.050 Sum_probs=18.2
Q ss_pred hcCCChhhHHHHHHHHhhcCCCccHH
Q 046694 76 SLGGLVEKGKKFFDEMQARNVKPTET 101 (118)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~g~~~~~~ 101 (118)
+..++..+|+++|++....-+..+.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHH
Confidence 45677888999999986655544433
No 375
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=59.10 E-value=21 Score=18.41 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCccH
Q 046694 42 MLGELDVAINLFEAMREDG-VEYYP 65 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~-~~p~~ 65 (118)
...+++.|...|.+++..| ++|+.
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChhh
Confidence 3568999999999998764 54443
No 376
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.49 E-value=22 Score=17.55 Aligned_cols=29 Identities=28% Similarity=0.188 Sum_probs=15.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 046694 38 LGYGMLGELDVAINLFEAMREDGVEYYPVSH 68 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 68 (118)
-|+.+.|++++|.+..+.+.+. +|+-.-.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 3455666666666666666553 4544333
No 377
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=58.47 E-value=29 Score=18.93 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=37.9
Q ss_pred HHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhH
Q 046694 20 KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 20 ~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 84 (118)
.+++.+.+.++.|-...-..-+.....+++.++++-+...| ...|..+.+++-..|....|
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 34444455555555555554555567888888888877663 45667777776666655444
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.33 E-value=43 Score=21.54 Aligned_cols=63 Identities=10% Similarity=-0.068 Sum_probs=39.0
Q ss_pred HHHHHHHhhhCC----CC-------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 046694 15 IDLANKIFDRLP----VK-------DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 15 ~~~a~~~~~~m~----~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (118)
.+.|..+|+.+. .| ....--..+-.|.+.|.+++|.+++++..++ |+......-|-...+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 356777776554 11 1123345567799999999999999999764 444444444444444433
No 379
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.33 E-value=39 Score=24.00 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHhcCCChhhHHHHHHHHhhcCC
Q 046694 42 MLGELDVAINLFEAMREDGVEYYP---VSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (118)
+.|+..+|.++|+.+.++ .|-. ...-.+|.++....-+.....++.+-.+...
T Consensus 287 klGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl 342 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL 342 (556)
T ss_pred HhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 458888888888887654 2322 2334577787777777777777666655443
No 380
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=57.99 E-value=20 Score=19.67 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=26.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHhcCCChhhH
Q 046694 36 LILGYGMLGELDVAINLFEAMRE-DGVEYYPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a 84 (118)
+....-..|..+.|..+++.+.. . +|+ -|..+++++-+.|.-..|
T Consensus 40 I~a~~~~~g~~~aa~~Ll~~L~~~r--~~~--wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 40 ILAEERNKGNIAAAEELLDRLERCD--KPG--WFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHhccChHHHHHHHHHHHHHhc--cCC--cHHHHHHHHHHcCCccHH
Confidence 33444445778888888888775 3 233 355666666666654433
No 381
>PF08564 CDC37_C: Cdc37 C terminal domain; InterPro: IPR013873 Cdc37 is a protein required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the C-terminal domain whose function is unclear. It is found C-terminal to the Hsp90 chaperone (heat shock protein 90) binding domain IPR013874 from INTERPRO and the N-terminal kinase binding domain of Cdc37 IPR013855 from INTERPRO []. ; PDB: 1US7_B.
Probab=57.88 E-value=11 Score=21.37 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=4.2
Q ss_pred HHHHHhhhCC
Q 046694 17 LANKIFDRLP 26 (118)
Q Consensus 17 ~a~~~~~~m~ 26 (118)
+++.+|+.++
T Consensus 16 ~~~evFeslP 25 (99)
T PF08564_consen 16 KAREVFESLP 25 (99)
T ss_dssp ---HHHHHS-
T ss_pred hHHHHHHHCC
Confidence 4567777665
No 382
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=57.70 E-value=24 Score=21.41 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 35 TLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
.+|......+.+..+.++.+.+++.|+..+..|....++-+.
T Consensus 5 ~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 5 ERIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 356667788888899999999999999998888877776554
No 383
>PRK09462 fur ferric uptake regulator; Provisional
Probab=57.10 E-value=40 Score=20.21 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=36.6
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 33 WITLILGYGML-GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 33 ~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
=..++..+... +.+-.|.++++++++.+...+..|.-.-|+.+.+.|-+.
T Consensus 19 R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455555554 467789999999998887778877777778888777654
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.96 E-value=62 Score=22.30 Aligned_cols=83 Identities=11% Similarity=-0.017 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHH----HHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh-----
Q 046694 6 LDFYTRTGRIDLAN----KIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS----- 76 (118)
Q Consensus 6 l~~~~~~~~~~~a~----~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----- 76 (118)
|++++..+++.++. +.|+.-.+-....-..=|-.|.|.+.+..+.++-..=.+..-.-+...|..+.+-|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 67778888888774 333333333444555556677888888887777766554321223334666554444
Q ss_pred cCCChhhHHHHH
Q 046694 77 LGGLVEKGKKFF 88 (118)
Q Consensus 77 ~~~~~~~a~~~~ 88 (118)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 568888887765
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.79 E-value=20 Score=16.05 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=6.7
Q ss_pred HHHhcCCHHHHHHH
Q 046694 8 FYTRTGRIDLANKI 21 (118)
Q Consensus 8 ~~~~~~~~~~a~~~ 21 (118)
.+...|++++|+.+
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 34445555555555
No 386
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.61 E-value=75 Score=22.56 Aligned_cols=55 Identities=5% Similarity=-0.051 Sum_probs=35.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHHHh--cCCChhhHHHHHHHHhhc
Q 046694 39 GYGMLGELDVAINLFEAMREDGVEYYPV--SHIGVLTACS--LGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~m~~~ 94 (118)
.+-+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 333778888888888888776 555544 3444444444 556677788887776443
No 387
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=53.78 E-value=65 Score=21.58 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHH
Q 046694 31 ASWITLILGYGMLGE---LDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 31 ~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
.+...++.+|...+. .++|.++.+.+.++. +-.+.+|-.-++.+.+.++.+.+.+.+.+|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 456666677766665 344455555554331 1124445455666666777777777777775532 22233444444
Q ss_pred HHH
Q 046694 108 YLL 110 (118)
Q Consensus 108 ~~~ 110 (118)
.++
T Consensus 163 ~~i 165 (278)
T PF08631_consen 163 HHI 165 (278)
T ss_pred HHH
Confidence 444
No 388
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=53.36 E-value=61 Score=21.14 Aligned_cols=88 Identities=9% Similarity=0.013 Sum_probs=64.2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCC-ccHHHHHHH
Q 046694 28 KDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK-PTETHYACM 106 (118)
Q Consensus 28 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~t~~~l 106 (118)
|.+..--.+-.+....|+..+|...|++-..--+--|....-.+-++....+++..|...++.+.+.+-. -++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4555555677889999999999999999776544558888888999999999999999999999776621 122333344
Q ss_pred HHHHHHccc
Q 046694 107 VYLLIKYNQ 115 (118)
Q Consensus 107 i~~~~~~g~ 115 (118)
-+.|...|+
T Consensus 167 aR~laa~g~ 175 (251)
T COG4700 167 ARTLAAQGK 175 (251)
T ss_pred HHHHHhcCC
Confidence 455554443
No 389
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=52.94 E-value=52 Score=21.01 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=38.4
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHH
Q 046694 25 LPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88 (118)
Q Consensus 25 m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (118)
++.........++.-|...|+.+.+.++.-+|.-. ..-..-++..|-+.|-++.-.-++
T Consensus 17 i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~-----~LDidq~i~lC~~~~LydalIYv~ 75 (196)
T PF12816_consen 17 IKSLPPEVFKALVEHYASKGRLERLEQLILHLDPS-----SLDIDQVIKLCKKHGLYDALIYVW 75 (196)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHH-----hcCHHHHHHHHHHCCCCCeeeeee
Confidence 34556678888888888888888888888776433 333344556666666555444333
No 390
>PRK02287 hypothetical protein; Provisional
Probab=52.56 E-value=57 Score=20.54 Aligned_cols=61 Identities=15% Similarity=-0.020 Sum_probs=33.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH-HHHHHHhcCCChhhHHHHHHHHh
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI-GVLTACSLGGLVEKGKKFFDEMQ 92 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~ 92 (118)
-..+--++..++.-.|..+.|.++++..+ --++-...| -+|+.|++..+.++..++-++..
T Consensus 106 kLs~vEAlAaaLyI~G~~~~A~~ll~~F~---WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 106 KLSSVEALAAALYILGFKEEAEKILSKFK---WGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34455566666666677777766665432 112222222 25677777766666666655543
No 391
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=52.55 E-value=4.4 Score=20.32 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 46 LDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
.++.+.+|+.|.+....|....|+-.|+-|.
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 4566667777766666666665555554443
No 392
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=52.46 E-value=20 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=21.4
Q ss_pred CCChhhHHHHHHHHhhcCCCccHHHHH
Q 046694 78 GGLVEKGKKFFDEMQARNVKPTETHYA 104 (118)
Q Consensus 78 ~~~~~~a~~~~~~m~~~g~~~~~~t~~ 104 (118)
.|+.+.|.++++.+...|++|....|.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 589999999999999999999887775
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.11 E-value=1.1e+02 Score=23.70 Aligned_cols=80 Identities=21% Similarity=0.153 Sum_probs=49.9
Q ss_pred HHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCc----------cHHHH
Q 046694 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDG----------VEY----------YPVSH 68 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------~~p----------~~~~~ 68 (118)
-.+.|+++.|.++..+. .+..-|..|-.+..++|++..|.++|.+-+.-+ -.+ ..-..
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 34667777777776543 355668888888888888888888887765421 000 01123
Q ss_pred HHHHHHHhcCCChhhHHHHHHH
Q 046694 69 IGVLTACSLGGLVEKGKKFFDE 90 (118)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~ 90 (118)
|...-+|...|+++++.+++.+
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHh
Confidence 4445556666777777766554
No 394
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=52.03 E-value=50 Score=20.02 Aligned_cols=38 Identities=5% Similarity=0.056 Sum_probs=29.1
Q ss_pred HHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHH
Q 046694 71 VLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVY 108 (118)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~ 108 (118)
+|..+.+.+....+.++++.+.+.|+..+..|..-.+.
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 45566677888888899999988898888777665444
No 395
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.76 E-value=61 Score=21.43 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPVKDS--ASWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
|-.+++-+|..++|..+++..+.-.. ..-.-++..|++..+.++..++=++..
T Consensus 153 laA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~~qn~~L 207 (263)
T KOG3154|consen 153 LAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVEVQNEFL 207 (263)
T ss_pred HHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 44455566777777777776662211 122346677777777666666555543
No 396
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.38 E-value=68 Score=21.74 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCccHHHHHHHHHHHhc
Q 046694 5 RLDFYTRTGRIDLANKIFDRLPVK--DSASWITLILGYGMLGELDVAINLFEAMRED---G--VEYYPVSHIGVLTACSL 77 (118)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~p~~~~~~~ll~~~~~ 77 (118)
.|+.....|++..|+.+..+...- ...-|+++=.. ...+++-.....++.+. + ...|+..|..++.+|.-
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~l 209 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQL 209 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667788999998888766521 11111111000 01233333333333221 1 25788889999999888
Q ss_pred CCChhhHH
Q 046694 78 GGLVEKGK 85 (118)
Q Consensus 78 ~~~~~~a~ 85 (118)
.|+.+.+.
T Consensus 210 Lgk~~~~~ 217 (291)
T PF10475_consen 210 LGKTQSAM 217 (291)
T ss_pred HhhhHHHH
Confidence 88765544
No 397
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=51.19 E-value=57 Score=20.13 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=38.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhcCCChhhHHHHHHHHhhcCC
Q 046694 42 MLGELDVAINLFEAMREDGVEYY---PVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (118)
..++++++..+++-|+-- .|+ ..+|-..+ +...|++++|.++|+++.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC
Confidence 478999999999999764 443 34444444 4578999999999999977653
No 398
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=50.94 E-value=41 Score=24.67 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 52 LFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 52 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
+|.++++..+.||...+-.+...|++.=-+|.|.++++-.
T Consensus 461 L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy 500 (586)
T KOG2223|consen 461 LFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVY 500 (586)
T ss_pred HHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhhee
Confidence 3344444445555555555555555554444444444443
No 399
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.88 E-value=98 Score=22.79 Aligned_cols=58 Identities=5% Similarity=0.111 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh------hHHHHHHHHhhcCCCcc
Q 046694 42 MLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE------KGKKFFDEMQARNVKPT 99 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~------~a~~~~~~m~~~g~~~~ 99 (118)
..++++.|+.++.+|...|..|....=..+..++-..|..+ .+..+++...+.|++-.
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~ 318 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEE 318 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcch
Confidence 44889999999999988888776654444444444444333 34445555555665433
No 400
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.35 E-value=51 Score=19.37 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 046694 35 TLILGYGMLGELDVAINLFEAMREDG 60 (118)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~ 60 (118)
++|+-+.++...++|+++.+-|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34555555666677777777766655
No 401
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.12 E-value=78 Score=21.40 Aligned_cols=104 Identities=10% Similarity=0.014 Sum_probs=46.6
Q ss_pred HhcCCHHHHHHHhhhCCC--CCHhhHHH-------HHHHHHhcCCHHHHHHHHHHHHH--cCCCcc--HHHHHHHHHHHh
Q 046694 10 TRTGRIDLANKIFDRLPV--KDSASWIT-------LILGYGMLGELDVAINLFEAMRE--DGVEYY--PVSHIGVLTACS 76 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~~--~~~~~~~~-------li~~~~~~~~~~~a~~~~~~m~~--~~~~p~--~~~~~~ll~~~~ 76 (118)
.-.+++++|-++|.+-.. +-...|+. .-....+.|.-.+|-..|-++-. ..+.|. +......|+.|.
T Consensus 25 gg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYT 104 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 334577788777765431 01112222 22333333443334444444321 112332 223334456666
Q ss_pred cCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcc
Q 046694 77 LGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYN 114 (118)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g 114 (118)
+.|++..|-+.+-++.+. ++.+..-+..-|.+|-.++
T Consensus 105 ~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 105 DMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred hhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHH
Confidence 666666665555554332 2334444445555554444
No 402
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=49.87 E-value=62 Score=23.35 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC-----------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPV-----------KDSASWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
.|+..++-.||+..|.+..+-+.- -.+.+|--+--+|.-.+++.+|.++|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999987651 155566667777888899999999998873
No 403
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=49.27 E-value=97 Score=22.28 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=67.4
Q ss_pred HHHhcCCHHHHHHHhhhCCC--C----------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 046694 8 FYTRTGRIDLANKIFDRLPV--K----------------DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHI 69 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~~--~----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 69 (118)
.+.+.|.+++|+.=|++... | ....-...+..+.-.|+...|+....++.+- .+-|...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 45678889999888876641 1 0012223455566678888888888888764 133777777
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 70 GVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
.--++|...|.+..|+.=++...+.- ..++.+.--+-..+..-|+.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 88888888888888876655553322 22344444444555444443
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.08 E-value=44 Score=18.27 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=14.6
Q ss_pred HHHHHhcCCChhhHHHHHHHH
Q 046694 71 VLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m 91 (118)
+.......|+.++|...+++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 344455678888888888776
No 405
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=49.03 E-value=66 Score=23.84 Aligned_cols=69 Identities=9% Similarity=-0.115 Sum_probs=47.8
Q ss_pred HHhcCCHHHHHHHhhhCC-------CC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCccHH
Q 046694 9 YTRTGRIDLANKIFDRLP-------VK-----------DSASWITLILGYGMLGELDVAINLFEAMRED----GVEYYPV 66 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~-------~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~ 66 (118)
+.+.+.+++|.+.+..-. .| |..-=+..+..+...|++.++..+++++... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 357788888887764221 11 3333456778889999999999999999654 3447888
Q ss_pred HHHHHHHHHhc
Q 046694 67 SHIGVLTACSL 77 (118)
Q Consensus 67 ~~~~ll~~~~~ 77 (118)
+|+-++-.+++
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 99885555553
No 406
>PRK11906 transcriptional regulator; Provisional
Probab=48.55 E-value=1.1e+02 Score=22.60 Aligned_cols=78 Identities=8% Similarity=0.054 Sum_probs=40.4
Q ss_pred HhcCCHHHHHHHhhhCC--CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHhcCCChhh
Q 046694 10 TRTGRIDLANKIFDRLP--VK---DSASWITLILGYGMLGELDVAINLFEAMRE-DGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 10 ~~~~~~~~a~~~~~~m~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
.-.++++.|..+|++-. .| +...|..++. .-+|+.++|.+.+++-.+ +-.+.-..+.-..++.|+.. -++.
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~--~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~ 425 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH--FHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKN 425 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhh
Confidence 44556777777777554 33 2233333333 336777777777777332 22222334444445555553 3555
Q ss_pred HHHHHHH
Q 046694 84 GKKFFDE 90 (118)
Q Consensus 84 a~~~~~~ 90 (118)
+.++|-+
T Consensus 426 ~~~~~~~ 432 (458)
T PRK11906 426 NIKLYYK 432 (458)
T ss_pred hHHHHhh
Confidence 5555543
No 407
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=48.36 E-value=71 Score=20.42 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=6.3
Q ss_pred CCccHHHHHHHHHHH
Q 046694 96 VKPTETHYACMVYLL 110 (118)
Q Consensus 96 ~~~~~~t~~~li~~~ 110 (118)
..|+..+|+.-+...
T Consensus 109 ~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 109 EDPNNELYRKSLEMA 123 (186)
T ss_dssp H-TT-HHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHH
Confidence 345555555444444
No 408
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.06 E-value=1.1e+02 Score=22.74 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVK---DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSL 77 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 77 (118)
.|+.-|.-.|++.+|.+...++.-| .-..+-+++-+.-+.|+-+..++++++.-.+|. .|-+-|-++|.+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 4788888899999999999888755 667888888888899988888888888776653 455555555554
No 409
>PF14162 YozD: YozD-like protein
Probab=47.96 E-value=35 Score=16.84 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=12.6
Q ss_pred hHHHHHHHHhhcCCCccHH
Q 046694 83 KGKKFFDEMQARNVKPTET 101 (118)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~ 101 (118)
-|.-.|.++.++|+.|+..
T Consensus 13 IAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 13 IAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHccCCCcHH
Confidence 4566677777777777543
No 410
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.55 E-value=85 Score=21.12 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=42.5
Q ss_pred hcCCHHHHHHHhhhCC--------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 11 RTGRIDLANKIFDRLP--------VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
.....+.|.+.|++.. ..+...-..++....+.|..+....+++..+.. .+...-..++.+.+...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHH
Confidence 3344555555555432 113334455556666666655544554444432 35666667777777777777
Q ss_pred hHHHHHHHHhhcC
Q 046694 83 KGKKFFDEMQARN 95 (118)
Q Consensus 83 ~a~~~~~~m~~~g 95 (118)
...++++......
T Consensus 219 ~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 219 LLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHHCTS
T ss_pred HHHHHHHHHcCCc
Confidence 7777777766543
No 411
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.98 E-value=49 Score=18.21 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=25.8
Q ss_pred CHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 046694 29 DSASWI-TLILGYGMLGELDVAINLFEAMREDG 60 (118)
Q Consensus 29 ~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~ 60 (118)
+..-|| ++++-+.++.--++|+++++-|.+.|
T Consensus 29 ~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 29 DFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred CcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 555565 56777778888999999999998876
No 412
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=46.45 E-value=1.2e+02 Score=22.34 Aligned_cols=104 Identities=11% Similarity=-0.052 Sum_probs=65.5
Q ss_pred HHhcCCHHHHHHHhhhCC-------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHhcCCC
Q 046694 9 YTRTGRIDLANKIFDRLP-------VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY-PVSHIGVLTACSLGGL 80 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 80 (118)
..+.|++..|.+.|-+-. .++...|-..-....+.|++++|+.--++..+- .|. .-.|-.--+++...+.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHH
Confidence 457899999999887654 346777887788888889999998887776532 221 1222233344556678
Q ss_pred hhhHHHHHHHHhhcCCCc-cHHHHHHHHHHHHHcc
Q 046694 81 VEKGKKFFDEMQARNVKP-TETHYACMVYLLIKYN 114 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~-~~~t~~~li~~~~~~g 114 (118)
|++|.+-|+...+..-.+ .-.|+.-...++-++.
T Consensus 337 ~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 888888888874433222 2344444444444433
No 413
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.70 E-value=53 Score=18.22 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 51 NLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
++|+--...|+..|..+|..+++-..-.--++-..++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78888888999999999999999887777888888888888
No 414
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=45.68 E-value=30 Score=18.91 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHH
Q 046694 46 LDVAINLFEAMREDGVEYYPVSHIG 70 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ 70 (118)
.+...+..++++.+|++||..-+..
T Consensus 11 l~~ie~~inELk~dG~ePDivL~G~ 35 (85)
T PF08967_consen 11 LELIEEKINELKEDGFEPDIVLVGP 35 (85)
T ss_dssp HHHHHHHHHHHHHTT----EEEE-H
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcH
Confidence 3556667788899999999765443
No 415
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=45.17 E-value=19 Score=23.85 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCCccHHH
Q 046694 46 LDVAINLFEAMREDGVEYYPVS 67 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~ 67 (118)
-..|+++|+-+.+.|++|+..+
T Consensus 66 a~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 66 ANSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred cchHHHHHHHHHhcCCCccccc
Confidence 4689999999999999998744
No 416
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.90 E-value=1.4e+02 Score=22.92 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=40.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC-------------CccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 42 MLGELDVAINLFEAMREDGV-------------EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~-------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
..|++..++.++++....|- .++......+++++.. |+...+.+++++|.+.|..|.
T Consensus 215 s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 215 ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 34888888888877653321 1234455566666655 889999999999988887764
No 417
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=44.52 E-value=1.1e+02 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=15.0
Q ss_pred HHhcCCHHHHHHHHHHH---HHcCCCc
Q 046694 40 YGMLGELDVAINLFEAM---REDGVEY 63 (118)
Q Consensus 40 ~~~~~~~~~a~~~~~~m---~~~~~~p 63 (118)
|+.+|+++...++|+.. ++..+.|
T Consensus 347 yad~g~~~rCi~LWkyAL~mqQk~l~P 373 (615)
T KOG0508|consen 347 YADSGEFERCIRLWKYALDMQQKNLEP 373 (615)
T ss_pred ecCCccHHHHHHHHHHHHHHHHhhcCC
Confidence 56667777777777754 4454544
No 418
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=43.85 E-value=1.4e+02 Score=22.37 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=41.7
Q ss_pred hcCCHHHHHHHHHHHHHcC------C----------CccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccH
Q 046694 42 MLGELDVAINLFEAMREDG------V----------EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~------~----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (118)
..|++..|+..++++...+ + .++......++++..+ ++.+.|..+++++...|..|..
T Consensus 219 s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 219 SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 3588888888888874321 1 2344455566666555 8999999999999999988764
No 419
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.64 E-value=1.1e+02 Score=21.23 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 9 YTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
....|++.+|..+|.... ..+...--.+...|...|+.+.|..+++.+...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 345677777777776554 223444556677788888888888888887543
No 420
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=43.58 E-value=62 Score=18.43 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 47 DVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
+.+....+.+...|.+|+.......+. .|......++++..
T Consensus 4 e~V~~Aa~~L~~~G~~pT~~~Vr~~lG----~GS~~ti~~~l~~w 44 (120)
T PF11740_consen 4 EDVIEAADELLAAGKKPTVRAVRERLG----GGSMSTISKHLKEW 44 (120)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHC----CCCHHHHHHHHHHH
Confidence 456667788888888887777666666 67777777777776
No 421
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=43.39 E-value=65 Score=18.54 Aligned_cols=46 Identities=2% Similarity=0.057 Sum_probs=28.3
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 53 FEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 53 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
.++.++.|+.++....+..+...++...+. ..++-..+.+.|+.++
T Consensus 57 ~q~ak~~gI~vsd~evd~~i~~ia~~n~ls-~~ql~~~L~~~G~s~~ 102 (118)
T PF09312_consen 57 LQEAKRLGIKVSDEEVDEAIANIAKQNNLS-VEQLRQQLEQQGISYE 102 (118)
T ss_dssp HHHHHHCT----HHHHHHHHHHHHHHTT---HHHHHHHCHHCT--HH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHcCCC-HHHHHHHHHHcCCCHH
Confidence 344467899999999999999988888874 4566666677787553
No 422
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=43.33 E-value=87 Score=20.02 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCC
Q 046694 46 LDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (118)
+++|.+.|++..+ .+|+-..|+.-|+... +|-+++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 5555555555544 4899999999999874 46777777766654
No 423
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=43.00 E-value=1.2e+02 Score=21.70 Aligned_cols=54 Identities=7% Similarity=-0.154 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH----HHHHh--cCCChhhHHHHHHH
Q 046694 37 ILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGV----LTACS--LGGLVEKGKKFFDE 90 (118)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~--~~~~~~~a~~~~~~ 90 (118)
...+.+.+++..|.++|+++.+...+|....+-.. .++|. ..-+.++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34556778999999999999887665555443333 33332 45677788888874
No 424
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.00 E-value=1e+02 Score=20.63 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
+...-.+++.. .-.+++..|..+++...+.
T Consensus 141 dlfi~RaVL~y-L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 DLFIARAVLQY-LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHH-HHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 33333444443 4457788888887777544
No 425
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.60 E-value=1.4e+02 Score=22.22 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHHcCCC------------ccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 43 LGELDVAINLFEAMREDGVE------------YYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
.|++..+...++.+...+-+ +.......+++++ ..++.+.|..+++++...|..|.
T Consensus 208 ~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 208 DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 47788888888776544311 2223355566666 44899999999999999886654
No 426
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.43 E-value=1.4e+02 Score=22.22 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHHcC---C----------CccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccH
Q 046694 43 LGELDVAINLFEAMREDG---V----------EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTE 100 (118)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~---~----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 100 (118)
.|++..|+.++++....| + .++......+++++.. ++.+.+.+++++|.+.|..|..
T Consensus 211 ~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 211 NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 588999999988875433 1 2334445566666555 8899999999999999988753
No 427
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=42.18 E-value=56 Score=18.20 Aligned_cols=65 Identities=11% Similarity=-0.090 Sum_probs=37.5
Q ss_pred HHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHH
Q 046694 19 NKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFF 88 (118)
Q Consensus 19 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (118)
..+++.+.+.++.+-.-.=..-+.....++|.++++-....| ...|..+++++ +..+...+..++
T Consensus 26 ~~ilD~Ll~~~Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG----~~A~~~F~~~L-~e~~~~L~~~L~ 90 (94)
T cd08329 26 LPILDSLLSANVITEQEYDVIKQKTQTPLQARELIDTVLVKG----NAAAEVFRNCL-KKNDPVLYRDLF 90 (94)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhhh----HHHHHHHHHHH-HhcCHhHHHHHH
Confidence 345555555555544444444445555788888888877664 56667777776 334444444443
No 428
>PRK05094 dsDNA-mimic protein; Reviewed
Probab=41.98 E-value=69 Score=18.46 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHHHHH
Q 046694 46 LDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGKKFF 88 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (118)
.+.|..+|=+|-..+..| +...||.-..-.+-...++-+...-
T Consensus 13 id~AYDiFLE~A~dNL~paDi~lFnlqFeerGaaE~v~~~~dW~ 56 (107)
T PRK05094 13 LEQAYDIFLELAADNLDPADILLFNLQFEERGGAELVDPAEDWQ 56 (107)
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHhcCCeeecCchhhHH
Confidence 567788888888887777 6777777776666555555444433
No 429
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=41.84 E-value=1.3e+02 Score=21.78 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=58.5
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhC-------CCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCc-
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRL-------PVKDSA------SWITLILGYGMLGELDVAINLFEAMR----EDGVEY- 63 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m-------~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~p- 63 (118)
|-+|-+.|.+..|+++|.-+..+- ...|+. +--.|-.++-..|.+..|.+.-++-. ..|=+|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 456677888888888876554322 222322 22234456777788888888888764 345443
Q ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 64 YPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
-.....++-+.|-..|+.|.|+.=|+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2445566777888999999988777663
No 430
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=41.55 E-value=33 Score=24.46 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=31.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhHH
Q 046694 38 LGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
+-|.+.|.+++|+++|..-... .| |.+++..-..+|.+...+..|+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHH
Confidence 3466788899999998875543 45 7777776666666665555443
No 431
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=41.50 E-value=79 Score=18.99 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=41.0
Q ss_pred HHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcC
Q 046694 16 DLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 16 ~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (118)
+++..+++++.+|-+..+..+.+.-... ++=+-..++ ..+..+-...|++|..+-=-..=..+-+.+.+.+
T Consensus 61 de~K~lL~eLV~PVPelFRdvAk~kIAg-------kIgelAl~e--~a~~it~d~iIrGYI~ATPKRDhkfL~k~L~~~~ 131 (141)
T PF11084_consen 61 DEQKALLEELVSPVPELFRDVAKHKIAG-------KIGELALEE--KASEITRDLIIRGYILATPKRDHKFLRKKLKEKN 131 (141)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHH-------HHHHHHHHc--CcccccHHHHHhhhhhcCCchhHHHHHHHHHHcC
Confidence 4666777777766555555554432211 111111222 3466677777888876654444455555566666
Q ss_pred CCccH
Q 046694 96 VKPTE 100 (118)
Q Consensus 96 ~~~~~ 100 (118)
+.+++
T Consensus 132 ID~~p 136 (141)
T PF11084_consen 132 IDYTP 136 (141)
T ss_pred CCchh
Confidence 65443
No 432
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.45 E-value=73 Score=18.59 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHH
Q 046694 45 ELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMV 107 (118)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li 107 (118)
..++|..+.+.+...+- ....+-.+-+..+...|++++|. . .....-.||...|-+|-
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l-~~~~~~~pdL~p~~AL~ 78 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---L-LPQCHCYPDLEPWAALC 78 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---H-HHTTS--GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---H-hcccCCCccHHHHHHHH
Confidence 68999999999998764 33444444567778999999991 1 12334578888887664
No 433
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=41.32 E-value=1.3e+02 Score=21.33 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=48.5
Q ss_pred HHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 046694 9 YTRTGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS 76 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (118)
+.|..++-...++.+.+...+...-.+++.+.. .|+.+..-.+++.++..|+.++......+...++
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARRDPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HHhhhhhcchHHHHHHHhccChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 445556666777777776666666666666654 5666777788888999999899988888877654
No 434
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=40.96 E-value=66 Score=17.98 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=17.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 046694 30 SASWITLILGYGMLGELDVAINLFEAMREDG 60 (118)
Q Consensus 30 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 60 (118)
..|++.|+.++...|.-..|.++-+.+.+.|
T Consensus 64 ~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 64 KASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred CcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 3455556666655555555555555554443
No 435
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=40.84 E-value=58 Score=19.14 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=17.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccH
Q 046694 42 MLGELDVAINLFEAMREDGVEYYP 65 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~ 65 (118)
..|+..+++..++++.+.|..|..
T Consensus 26 ~~~d~~~~l~~~~~l~~~G~d~~~ 49 (143)
T PF12169_consen 26 LEGDAAEALELLNELLEQGKDPKQ 49 (143)
T ss_dssp HTT-HHHHHHHHHHHHHCT--HHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHHH
Confidence 568888899999998888877654
No 436
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=40.73 E-value=1.2e+02 Score=20.91 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH--HHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 37 ILGYGMLGELDVAINLFEAMREDGVEYYPVSH--IGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
...+...+.++.|+..+++-...--.|-...| -.+.+.|...|..+.|..++..+.+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567778899999999874332223333333 33467788999999999999888543
No 437
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=40.71 E-value=4.6 Score=22.03 Aligned_cols=21 Identities=5% Similarity=-0.002 Sum_probs=9.8
Q ss_pred CCCccHHHHHHHHHHHhcCCC
Q 046694 60 GVEYYPVSHIGVLTACSLGGL 80 (118)
Q Consensus 60 ~~~p~~~~~~~ll~~~~~~~~ 80 (118)
.+.-+..+|.++|++|++.|.
T Consensus 19 eLsk~~~vyRvFiNgYar~g~ 39 (88)
T PF11491_consen 19 ELSKNEAVYRVFINGYARNGF 39 (88)
T ss_dssp TTTTTTTB------TTSS--E
T ss_pred HhhcccceeeeeecccccceE
Confidence 345678899999999999985
No 438
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=40.68 E-value=65 Score=17.77 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=39.0
Q ss_pred HHHhcCCHHHHHHHhhhCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 8 FYTRTGRIDLANKIFDRLPVK------DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
-+.+..++.+++.+|+++... +..-.+..|+-|-.... .-+|+++.--.+..++..+....-.
T Consensus 5 ~~tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~-----------lVDGvPaQGG~~~~i~~~~i~~~a~ 73 (85)
T PF07240_consen 5 DATKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENN-----------LVDGVPAQGGFWGKIVKKIISPAAK 73 (85)
T ss_pred HHHHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhh-----------cccCcCCCCCchHHHHHHHHHHHHH
Confidence 456778888899999888732 22233334433322211 2356666666666555555544444
Q ss_pred hhHHHHHHH
Q 046694 82 EKGKKFFDE 90 (118)
Q Consensus 82 ~~a~~~~~~ 90 (118)
+-+..+|+.
T Consensus 74 ~v~~~~~~~ 82 (85)
T PF07240_consen 74 SVADGFFKQ 82 (85)
T ss_pred HHHHHHHHh
Confidence 444444443
No 439
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=40.34 E-value=77 Score=18.57 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=41.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCC
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAM-REDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNV 96 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (118)
+......+|..|-- -++.+.+++++. ...|+. +..+-..+++...+.|-++.....++.+..++.
T Consensus 25 ~~~~~dg~IqrFE~--t~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~Wl~m~~~RN~ 90 (124)
T PF08780_consen 25 SELERDGVIQRFEF--TFELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEIWLDMLEDRNL 90 (124)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Confidence 33444444444422 367777777774 345774 444448888888888988888887777766554
No 440
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=40.32 E-value=1.4e+02 Score=21.38 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccccC
Q 046694 83 KGKKFFDEMQARNVKPTETHYACMVYLLIKYNQKAR 118 (118)
Q Consensus 83 ~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~ 118 (118)
.-.+++.++.++|+--|..+=..+|..|=|-|.+|+
T Consensus 314 ~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lEK 349 (363)
T TIGR03236 314 PLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLER 349 (363)
T ss_pred hHHHHHHHHHhcCceeCchhHHHHHHHHHHhCcccc
Confidence 456899999999999999999999999999888775
No 441
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=40.25 E-value=1.1e+02 Score=21.13 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=39.6
Q ss_pred HHHHhcCCHHHHHHHhhh-CC---CC-CHhhHHHH-HHHHHhcCCHHHHHHHHHHHHHc
Q 046694 7 DFYTRTGRIDLANKIFDR-LP---VK-DSASWITL-ILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~-m~---~~-~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
..+...+.++.|...+++ +. .+ +...+..+ .+.|...|+.+.|..++.++.+.
T Consensus 221 ~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 221 RALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788899999999997 44 22 44444443 47778889999999999999654
No 442
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.16 E-value=1e+02 Score=19.92 Aligned_cols=62 Identities=13% Similarity=-0.055 Sum_probs=41.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYP-VSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
....-+.++..+...|+++.|-++|--+.+.. +.|. ..|..-+..+.+.+.-....+.++.|
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 44566788888888899999999998887542 2232 24666677777666655554555555
No 443
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=39.86 E-value=41 Score=18.58 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=21.7
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCC
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVK 28 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~ 28 (118)
|..|+..+...++.+++..+|+.+-.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~t~ 31 (88)
T TIGR02531 5 LDELFDAILTLKNREECYRFFDDIATI 31 (88)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCH
Confidence 667788888888888888888877655
No 444
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=39.83 E-value=82 Score=18.70 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 46 LDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
...+.+++..+.+. .++...|...+|+-+++.|-+
T Consensus 20 ~~t~~eI~~~l~~~-~ews~sTV~TLl~RL~KKg~l 54 (123)
T COG3682 20 PATVREIIEELPAD-REWSYSTVKTLLNRLVKKGLL 54 (123)
T ss_pred CccHHHHHHHHhhc-ccccHHHHHHHHHHHHhccch
Confidence 34455555555544 455666666666666665544
No 445
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.54 E-value=1.3e+02 Score=20.86 Aligned_cols=78 Identities=5% Similarity=-0.081 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMRE--DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYL 109 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~ 109 (118)
-...-|.+++..|+|.+++...-+--+ ++++|.+.-..++ -|.|.+.+..+.++-..=...----+...|..+.+.
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaEL 162 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAEL 162 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHH
Confidence 445678999999999999887666533 3455655555544 477999998888777765332222233446666666
Q ss_pred HH
Q 046694 110 LI 111 (118)
Q Consensus 110 ~~ 111 (118)
|.
T Consensus 163 yL 164 (309)
T PF07163_consen 163 YL 164 (309)
T ss_pred HH
Confidence 54
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.47 E-value=1.1e+02 Score=20.02 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 046694 4 PRLDFYTRTGRIDLANKIFDRLPVK--DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLV 81 (118)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (118)
-++.++...|+.+.|.+++.....+ +...-..++.. ..++.+.+|...-+...+.. ....+..++..+.....
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~- 187 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECA- 187 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhh-
Confidence 4788888899999999999987743 33333344444 66789999998877765421 14466666666664433
Q ss_pred hhHHHHHHHHhhcCCCcc
Q 046694 82 EKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 82 ~~a~~~~~~m~~~g~~~~ 99 (118)
. .+.++++...-+.++
T Consensus 188 -~-~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 188 -R-SGRLDELLSLPLDEE 203 (226)
T ss_pred -h-hhHHHHHHhCCCChH
Confidence 1 222444544444333
No 447
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=39.21 E-value=91 Score=19.05 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 49 AINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 49 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
...+|..++...++++...--.-+--++..+++-+|.+.|=+|
T Consensus 43 l~PL~~~Lk~~~l~~dil~~L~~Iv~~~q~r~y~~And~Yl~L 85 (144)
T PF02840_consen 43 LKPLFKKLKKRTLPEDILDSLATIVYHLQQREYVKANDAYLKL 85 (144)
T ss_dssp HHHHHHHHHCT-S-HHHHHHHHHHHHHHCCCGHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456667777777777665555555667788888888888777
No 448
>PRK06904 replicative DNA helicase; Validated
Probab=38.64 E-value=1.6e+02 Score=21.71 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHH
Q 046694 47 DVAINLFEAMREDGVEYYPVSHIGVLT 73 (118)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~ 73 (118)
....+.+.+|...|.++|..|....|+
T Consensus 62 ~~IF~ai~~L~~~g~~iD~vtl~~~L~ 88 (472)
T PRK06904 62 RIIFQEMELLFRQNTPIDLLTLDQALK 88 (472)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 333334444444454555554444443
No 449
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.20 E-value=1e+02 Score=22.55 Aligned_cols=44 Identities=16% Similarity=-0.042 Sum_probs=28.2
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCC
Q 046694 54 EAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVK 97 (118)
Q Consensus 54 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 97 (118)
.++...|+..+..+++.+|..+...+-.+.+.++++.+.-.|.+
T Consensus 306 ~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGsk 349 (436)
T KOG2058|consen 306 LHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSK 349 (436)
T ss_pred HhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccH
Confidence 33344455556667777777777777777777777777665543
No 450
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=37.99 E-value=49 Score=24.27 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=8.7
Q ss_pred HHhcCCHHHHHHHhhhC
Q 046694 9 YTRTGRIDLANKIFDRL 25 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m 25 (118)
+||.|+.+....+|+.-
T Consensus 27 Lck~gdcraGv~ff~aA 43 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAA 43 (639)
T ss_pred HHhccchhhhHHHHHHH
Confidence 34555555555555533
No 451
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=37.98 E-value=90 Score=18.67 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=27.0
Q ss_pred cCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHH--HHHHHHHHcC--CCccHHHHHHHHHHHhcCC
Q 046694 12 TGRIDLANKIFDRLPVKDSASWITLILGYGMLGELDVAI--NLFEAMREDG--VEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~--~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~ 79 (118)
.|..++|..+|++....-...|..-|..+.....++... .+-...+..+ +..+..+|..++.-....+
T Consensus 55 ~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~~fL~~~~ 126 (142)
T PF04494_consen 55 KGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLLQFLQENE 126 (142)
T ss_dssp TT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHHHHHHhCC
Confidence 445555555555544333333444444444433333333 2222222222 2334455555544444433
No 452
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=37.92 E-value=71 Score=17.43 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=23.3
Q ss_pred HHHHHHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046694 15 IDLANKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 15 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (118)
.+...+.-+.....|..+-..++.++...-..+-|.++++.+.-
T Consensus 22 ~~AVq~~~e~~~~~nqktL~vFl~ALa~~YGe~~a~~~~~~~~l 65 (81)
T PF09119_consen 22 TNAVQKYVENQRVENQKTLQVFLEALAERYGEETANKVLDKMDL 65 (81)
T ss_dssp HHHHHHHHHCS--S-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 34444444555555666666666666666556666666666543
No 453
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=37.85 E-value=79 Score=21.09 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=31.5
Q ss_pred HhcCC-ChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHHcccc
Q 046694 75 CSLGG-LVEKGKKFFDEMQARNVKPTETHYACMVYLLIKYNQK 116 (118)
Q Consensus 75 ~~~~~-~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~~g~~ 116 (118)
|+-.. ..+.+.+.+.++...+..++.......++-+.+.|++
T Consensus 220 CGp~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (267)
T cd06182 220 CGDAKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRY 262 (267)
T ss_pred ECCcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCe
Confidence 34445 6667777777777777888888888888888888875
No 454
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.70 E-value=1.8e+02 Score=22.06 Aligned_cols=103 Identities=13% Similarity=-0.068 Sum_probs=69.5
Q ss_pred HHHhcCCHHHHHHHhhhCC---------CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHH-------HcCCCccH---
Q 046694 8 FYTRTGRIDLANKIFDRLP---------VK---DSASWITLILGYGMLGELDVAINLFEAMR-------EDGVEYYP--- 65 (118)
Q Consensus 8 ~~~~~~~~~~a~~~~~~m~---------~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~p~~--- 65 (118)
.+.-.|++.+|.+++.... .| .-..||.|-....+.|.+..+..+|.+.. +.|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4556799999999987553 12 22334666555555666665555555543 45766543
Q ss_pred --------HHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 046694 66 --------VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACMVYLLIK 112 (118)
Q Consensus 66 --------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~li~~~~~ 112 (118)
.+||+-+- |.+.|++-.|.+.|.+... -+..++..|--|-.+|.-
T Consensus 329 ls~nks~eilYNcG~~-~Lh~grPl~AfqCf~~av~-vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLL-YLHSGRPLLAFQCFQKAVH-VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHH-HHhcCCcHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 45776654 4677999999999988754 367789999999998874
No 455
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=37.53 E-value=95 Score=18.79 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=28.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 046694 27 VKDSASWITLILGYGMLGELDVAINLFEAMRED 59 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (118)
.|+...-..-++++-+.+++..|.++|+-.+..
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 467778889999999999999999999998743
No 456
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.45 E-value=1.8e+02 Score=22.04 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=55.8
Q ss_pred cCCHHHH-HHHhhhCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHH
Q 046694 12 TGRIDLA-NKIFDRLP----VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKK 86 (118)
Q Consensus 12 ~~~~~~a-~~~~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 86 (118)
.|++..| .++|+-++ .|+....-+.| +...|+++.+...+...... +-....+-.++++..-+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3555544 45555444 34444333333 45678899888888775432 33456778889999999999999999
Q ss_pred HHHHHhhcCCC
Q 046694 87 FFDEMQARNVK 97 (118)
Q Consensus 87 ~~~~m~~~g~~ 97 (118)
+-+.|....++
T Consensus 379 ~a~~~l~~eie 389 (831)
T PRK15180 379 TAEMMLSNEIE 389 (831)
T ss_pred HHHHHhccccC
Confidence 99988776665
No 457
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=37.35 E-value=1.8e+02 Score=21.83 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHhcCCChhhHHHHHHHHhhcC
Q 046694 33 WITLILGYGMLGELDVAINLFEAMREDGVEY--YPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (118)
-..++.-|...|+..+|.++.+++ |++. -.+++-+++-+.-+.|+-.....++++.-+.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 457889999999999999998775 3442 46778888888888888776666666654444
No 458
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=37.26 E-value=54 Score=15.92 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=12.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcc
Q 046694 41 GMLGELDVAINLFEAMREDGVEYY 64 (118)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~ 64 (118)
...|--.+++.+.-++.+.|+.|.
T Consensus 15 LntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 15 LNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HcCCCCHHHHHHHHHHHHCCCCHH
Confidence 334555555555555555555443
No 459
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.11 E-value=2.1e+02 Score=22.56 Aligned_cols=56 Identities=20% Similarity=0.003 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHcC---C----------CccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 43 LGELDVAINLFEAMREDG---V----------EYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~---~----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
.|++..++.+++++...| + .++......+++++.+ ++.+.+..++++|.+.|+.+.
T Consensus 211 ~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 211 AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 488888888888775432 1 1233446666777666 889999999999999888664
No 460
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=37.03 E-value=31 Score=18.90 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~ 57 (118)
.-+.|+..|....-++.+..+|+.|.
T Consensus 47 La~lLv~~y~~~~A~~~t~~if~~mn 72 (86)
T cd08320 47 LAELLVEHYGGQQAWDVTLSIFEKMN 72 (86)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHC
Confidence 34555566666666777777777764
No 461
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.83 E-value=1.5e+02 Score=20.89 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHHH
Q 046694 51 NLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYACM 106 (118)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l 106 (118)
..|.+++...++.+...|-.++.++-+ +-.+--.+.|..+.+.-+.||...+..+
T Consensus 4 ~ff~~lr~A~vpvs~re~llL~egl~~-~v~~~~ld~Fy~LaraaLvkde~~ldkf 58 (393)
T COG3825 4 CFFNELRAARVPVSVREYLLLLEGLKQ-TVVEYDLDLFYYLARAALVKDERHLDKF 58 (393)
T ss_pred HHHhHhhhcccccccchHHHHHHHHhh-hhhhhhhHHHHHHHHHhcCccHHHHHHH
Confidence 345666666666666666666666432 3333334445454444455555544433
No 462
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=36.82 E-value=82 Score=17.88 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=39.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh---hHHHHHHHHhhcCC
Q 046694 42 MLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE---KGKKFFDEMQARNV 96 (118)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~g~ 96 (118)
...+++..++..++.+...+-|...|=+.+++.+.+...+. +|..+-..+.+.|+
T Consensus 8 sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGy 65 (99)
T cd04445 8 SMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGY 65 (99)
T ss_pred HHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCC
Confidence 33456666666666666677788888888888888776554 67777777777774
No 463
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.63 E-value=1.8e+02 Score=21.71 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=36.3
Q ss_pred cCCHHHHHHHhhhCC-----------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 046694 12 TGRIDLANKIFDRLP-----------------VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYY 64 (118)
Q Consensus 12 ~~~~~~a~~~~~~m~-----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 64 (118)
.|++..|..++++.. ..+....-.++.+.. .++.+.++.++++|.+.|..|.
T Consensus 211 ~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 211 NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 477888877776532 123334445555544 4899999999999999998875
No 464
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=36.60 E-value=90 Score=18.25 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhh
Q 046694 47 DVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEK 83 (118)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (118)
....++|+...+....-....|+.+++.+.+.|+...
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~ 108 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEA 108 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444444444433222233555555555555555443
No 465
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=36.47 E-value=1.3e+02 Score=20.12 Aligned_cols=96 Identities=10% Similarity=-0.027 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCHH---HHHHHhhhCC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH--
Q 046694 4 PRLDFYTRTGRID---LANKIFDRLP--VK-DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTAC-- 75 (118)
Q Consensus 4 ~ll~~~~~~~~~~---~a~~~~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-- 75 (118)
.|+.+|...+..+ +|..+.+.+. -| ...++-.-|..+.+.++.+.+.+++.+|... +......|...++.+
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHH
Confidence 4566777666544 5555655553 23 3556667788888899999999999999876 222445555555554
Q ss_pred -hcCCChhhHHHHHHHHhhcCCCccHH
Q 046694 76 -SLGGLVEKGKKFFDEMQARNVKPTET 101 (118)
Q Consensus 76 -~~~~~~~~a~~~~~~m~~~g~~~~~~ 101 (118)
... ..+.+...++.+...-+.|...
T Consensus 168 l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 168 LAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 443 3456777777775555666554
No 466
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=36.46 E-value=84 Score=17.88 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHcc
Q 046694 100 ETHYACMVYLLIKYN 114 (118)
Q Consensus 100 ~~t~~~li~~~~~~g 114 (118)
..|..++++-+.+.|
T Consensus 35 ~sTv~t~L~rL~~Kg 49 (115)
T PF03965_consen 35 YSTVQTLLNRLVEKG 49 (115)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhCC
Confidence 334444444444433
No 467
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.45 E-value=97 Score=18.56 Aligned_cols=27 Identities=7% Similarity=-0.096 Sum_probs=14.1
Q ss_pred HHHHHHhcCCChhhHHHHHHHHhhcCC
Q 046694 70 GVLTACSLGGLVEKGKKFFDEMQARNV 96 (118)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~g~ 96 (118)
.++-.+...|+++.|..+.+...+.|.
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 333444555555555555555555553
No 468
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=36.37 E-value=99 Score=18.67 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCC
Q 046694 6 LDFYTRTGRIDLANKIFDRLPVK 28 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~~~ 28 (118)
++-+.+.|++.+|..+-=++..|
T Consensus 4 L~N~l~~~~y~~Al~LAl~L~~P 26 (141)
T PF08625_consen 4 LSNLLRQKDYKEALRLALKLDHP 26 (141)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCc
Confidence 44566777777777666555443
No 469
>PF14044 NETI: NETI protein
Probab=36.36 E-value=37 Score=17.17 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHcCCCcc
Q 046694 47 DVAINLFEAMREDGVEYY 64 (118)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~ 64 (118)
+-..+++++|++.|..|-
T Consensus 8 ETI~~CL~RM~~eGY~Pv 25 (57)
T PF14044_consen 8 ETISDCLARMKKEGYMPV 25 (57)
T ss_pred CcHHHHHHHHHHcCCCce
Confidence 344567888888887663
No 470
>PRK08006 replicative DNA helicase; Provisional
Probab=36.31 E-value=1.8e+02 Score=21.51 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCCccHHHHHHHH
Q 046694 51 NLFEAMREDGVEYYPVSHIGVL 72 (118)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~ll 72 (118)
+.+.+|...|.++|..|...-|
T Consensus 70 ~ai~~L~~~g~~iD~vtv~~~L 91 (471)
T PRK08006 70 TEMARLQESGSPIDLITLAESL 91 (471)
T ss_pred HHHHHHHHCCCCCCHHHHHHHH
Confidence 3333334444444444444433
No 471
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.01 E-value=1.1e+02 Score=21.61 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=33.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHH---------------HHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 29 DSASWITLILGYGMLGELDVAIN---------------LFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~---------------~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
...+|..++.+++..|+.+..+- .|++....=.+.++-+=-.+++.|-+......-.-.++.|
T Consensus 320 hlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqm 397 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQM 397 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 44678888888888887655432 2222222212333444445666665544444444444445
No 472
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=35.86 E-value=1.7e+02 Score=21.16 Aligned_cols=87 Identities=17% Similarity=0.024 Sum_probs=63.4
Q ss_pred HHHHHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh
Q 046694 6 LDFYTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE 82 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (118)
+..+.-.|+...|+.....+. ..|...|..--.+|...|.+..|+.=++...+..- -++..+--+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHH
Confidence 455666788888887777654 45888999999999999999999887776644322 25566666667777778888
Q ss_pred hHHHHHHHHhh
Q 046694 83 KGKKFFDEMQA 93 (118)
Q Consensus 83 ~a~~~~~~m~~ 93 (118)
.+....++-.+
T Consensus 241 ~sL~~iRECLK 251 (504)
T KOG0624|consen 241 NSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHc
Confidence 77776666655
No 473
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.41 E-value=1.9e+02 Score=21.72 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=35.6
Q ss_pred hcCCHHHHHHHhhhCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 046694 11 RTGRIDLANKIFDRLPVK--DSASWITLILGYGMLGELDVAINLFEAMREDGVEY 63 (118)
Q Consensus 11 ~~~~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 63 (118)
+.-+.++...+++++... ....++.++++...+|-.+.+.-+.+.+....+.+
T Consensus 357 r~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~ 411 (618)
T PF01347_consen 357 RTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTD 411 (618)
T ss_dssp TTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-H
T ss_pred hcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCH
Confidence 344566777777777655 67788999999999998888877777777655543
No 474
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=35.35 E-value=68 Score=16.49 Aligned_cols=42 Identities=17% Similarity=-0.039 Sum_probs=20.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 38 LGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
..+.+++.+--...+.+.+...|...+..+..-.|++.-+.|
T Consensus 5 ~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 5 RILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 334444444444455555544455444455544444444444
No 475
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=35.31 E-value=57 Score=15.61 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=17.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 046694 36 LILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~ 58 (118)
.|......|+++.|++..++...
T Consensus 7 ~i~~~i~~g~~~~a~~~~~~~~~ 29 (58)
T smart00668 7 RIRELILKGDWDEALEWLSSLKP 29 (58)
T ss_pred HHHHHHHcCCHHHHHHHHHHcCH
Confidence 34556678899999988888754
No 476
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=35.28 E-value=1.9e+02 Score=21.59 Aligned_cols=91 Identities=8% Similarity=0.034 Sum_probs=57.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHH-------HH----HHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcC
Q 046694 27 VKDSASWITLILGYGMLGELDVAIN-------LF----EAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 27 ~~~~~~~~~li~~~~~~~~~~~a~~-------~~----~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 95 (118)
.|....|...|..-+..|.+.+++- +| +++......++...|...|+.|...+--+-+..+.+.+.+..
T Consensus 417 ~p~~~aY~~~l~~~a~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~ 496 (530)
T PRK14713 417 SPVTLAYTDFLLARAAGGSYAVGAAAVLPCFWLYAEVGAELHARAGNPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAF 496 (530)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHHhhccCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4677789999988888888876532 22 233221111234689999999995444444444444445545
Q ss_pred CCccHHHHHHHHHHHHHccccc
Q 046694 96 VKPTETHYACMVYLLIKYNQKA 117 (118)
Q Consensus 96 ~~~~~~t~~~li~~~~~~g~~~ 117 (118)
-..+......+.+.|.++-++|
T Consensus 497 ~~~s~~~~~~~~~~F~~a~~~E 518 (530)
T PRK14713 497 RAASPAERAAMARAFLTACRYE 518 (530)
T ss_pred hhCCHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888765543
No 477
>PF05261 Tra_M: TraM protein, DNA-binding; InterPro: IPR007925 The TraM protein is an essential part of the DNA transfer machinery of the conjugative resistance plasmid R1 (IncFII). On the basis of mutational analyses, it was shown that the essential transfer protein TraM has at least two functions. First, a functional TraM protein was found to be required for normal levels of transfer gene expression. Second, experimental evidence was obtained that TraM stimulates efficient site-specific single-stranded DNA cleavage at the oriT, in vivo. Furthermore, a specific interaction of the cytoplasmic TraM protein with the membrane protein TraD was demonstrated, suggesting that the TraM protein creates a physical link between the relaxosomal nucleoprotein complex and the membrane-bound DNA transfer apparatus [].; GO: 0003677 DNA binding, 0000746 conjugation; PDB: 3ON0_A 3OMY_B 1DP3_A 2G9E_A 3D8A_B 2G7O_A.
Probab=35.18 E-value=1e+02 Score=18.39 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 41 GMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
.+..-.++...+..+=++.|..+..++|++..+.+...|
T Consensus 8 ~s~~v~~~I~~iVe~r~qeGA~~~dvs~SSv~smLlELG 46 (127)
T PF05261_consen 8 VSNKVLEEINDIVEERRQEGATEKDVSFSSVSSMLLELG 46 (127)
T ss_dssp --HCHHHHHHHHHHHHHCCT-TTTT--HHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 334445666677777777888888888888888777766
No 478
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=35.07 E-value=75 Score=17.17 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHHH---cCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhh
Q 046694 43 LGELDVAINLFEAMRE---DGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 43 ~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
.|+.+.|+..|+.-.+ .|+..+.. ..+....++.|.++-++|..
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 4788888888877643 34432222 33455678888888888854
No 479
>PRK08840 replicative DNA helicase; Provisional
Probab=34.93 E-value=1.8e+02 Score=21.35 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHH
Q 046694 48 VAINLFEAMREDGVEYYPVSHIGVLT 73 (118)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~ 73 (118)
...+.+.+|...|.++|.+|....|+
T Consensus 60 ~If~ai~~L~~~g~~iD~vtv~~~L~ 85 (464)
T PRK08840 60 LIFEGVKSILEAGKPLDLITLSEHLE 85 (464)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 33333334444444445544444443
No 480
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=34.85 E-value=82 Score=17.27 Aligned_cols=63 Identities=10% Similarity=-0.008 Sum_probs=36.3
Q ss_pred HHHhhhCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHH
Q 046694 19 NKIFDRLPVKDSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGK 85 (118)
Q Consensus 19 ~~~~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (118)
..+++.+.+.++.+-...=..-++....++|..+.+-+...| ...|..+.+++-+.|....|.
T Consensus 17 ~~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG----~~Af~~F~~aL~~~~~~~La~ 79 (86)
T cd08323 17 SYIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKD----NHAYVSFYNALLHEGYKDLAL 79 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCChHHHH
Confidence 334555545555554444444445566778877777777653 456666666666555544443
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.69 E-value=1.4e+02 Score=19.83 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 046694 36 LILGYGMLGELDVAINLFEAMR 57 (118)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~ 57 (118)
-|......|+.++|.+....+-
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3444455555555555555543
No 482
>PRK10292 hypothetical protein; Provisional
Probab=34.63 E-value=73 Score=16.59 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=23.0
Q ss_pred HHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 55 AMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 55 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
.|...|.+|.......+|+.-...+..+......+.|
T Consensus 24 ~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 24 EMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred HHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 3456788888888888886655555554444333333
No 483
>PF04269 DUF440: Protein of unknown function, DUF440; InterPro: IPR007376 This entry represents hypothetical proteins such as HI1450, which is believed to act as a putative dsDNA mimic. HI1450 is an acidic protein with a core structure consisting of alpha(2)-beta(4), where the alpha-helices are packed against the side of an anti-parallel 4-stranded beta meander. As such, it has some similarity to the dsDNA mimics uracil-DNA glycosylase inhibitor and nuclease A inhibitor (NuiA), including the distribution of surface charges and the position of the hydrophobic cavity []. DNA mimics act to inhibit or regulate dsDNA-binding proteins. ; PDB: 1NNV_A.
Probab=34.61 E-value=55 Score=18.71 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHcCCCc-cHHHHHHH
Q 046694 46 LDVAINLFEAMREDGVEY-YPVSHIGV 71 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p-~~~~~~~l 71 (118)
.+.|..+|-+|-..+..| |...||.-
T Consensus 10 id~AYDiFLE~A~dNL~paDi~lF~~q 36 (103)
T PF04269_consen 10 IDQAYDIFLELAPDNLDPADILLFNLQ 36 (103)
T ss_dssp HHHHHHHHHHH-STTS-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 567888888888888776 56666653
No 484
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=34.50 E-value=2.2e+02 Score=22.57 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHH
Q 046694 67 SHIGVLTACSLGGLVEKGKKFFDEM 91 (118)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m 91 (118)
+|-.--+.++...++++|.+.|.+.
T Consensus 806 Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 806 VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3444555666777777777777665
No 485
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=34.47 E-value=80 Score=17.02 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHHHH
Q 046694 46 LDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHYAC 105 (118)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ 105 (118)
+..+..+++.+.+.|+ .+...|..+-. +....+.|.++++.+..+|-..-..-+++
T Consensus 14 v~~v~~ilD~L~~~~V-it~e~~~~I~a---~~T~~~kar~Lld~l~~kG~~A~~~F~~~ 69 (82)
T cd08330 14 VTNVDPILDKLHGKKV-ITQEQYSEVRA---EKTNQEKMRKLFSFVRSWGASCKDIFYQI 69 (82)
T ss_pred HhhHHHHHHHHHHCCC-CCHHHHHHHHc---CCCcHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4466778888888775 35555555443 45678888888888877764433333333
No 486
>PRK14700 recombination factor protein RarA; Provisional
Probab=34.40 E-value=1.6e+02 Score=20.44 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChh-----hHHHHHHHHhhcCC
Q 046694 32 SWITLILGYGML---GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGGLVE-----KGKKFFDEMQARNV 96 (118)
Q Consensus 32 ~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-----~a~~~~~~m~~~g~ 96 (118)
.+-.+|+++.|+ .+++.|+-.+-+|.+.|-.|....=..++-+.-.-|..+ .|...++.....|+
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 445568888877 579999999999999987777666666666666666332 34444555555554
No 487
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=34.34 E-value=2e+02 Score=21.63 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=42.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCccH----------HHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCccHHHH
Q 046694 39 GYGMLGELDVAINLFEAMREDG---VEYYP----------VSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPTETHY 103 (118)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~---~~p~~----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 103 (118)
+....|...+++.++++....| +.+.. .....++.+ .-.++...+...++++.+.|..|....-
T Consensus 207 a~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~~~~-i~~~d~~~~~~~~~~l~~~G~~~~~~l~ 283 (515)
T COG2812 207 ARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSLLEA-ILKGDAKEALRLINELIEEGKDPEAFLE 283 (515)
T ss_pred HHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 3344588999999999998764 22211 112223333 2458999999999999999988765443
No 488
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=34.27 E-value=1.2e+02 Score=18.98 Aligned_cols=82 Identities=12% Similarity=0.238 Sum_probs=47.8
Q ss_pred chHHHHHHHhcCCHHHHHHHhhhCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 2 IEPRLDFYTRTGRIDLANKIFDRLPVKDSASWITLILGYGML--GELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
|..++..+.+.|++.....+..--.-+|...-...+-.+... .-..-|+++++++.. .+..+++.+...|
T Consensus 32 ~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~~~iievLL~~g 103 (167)
T PF07035_consen 32 YELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------AYEEIIEVLLSKG 103 (167)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--------hHHHHHHHHHhCC
Confidence 456777777888777777777644433333333333222222 125556666666542 2445667777778
Q ss_pred ChhhHHHHHHHH
Q 046694 80 LVEKGKKFFDEM 91 (118)
Q Consensus 80 ~~~~a~~~~~~m 91 (118)
++-+|.++.+..
T Consensus 104 ~vl~ALr~ar~~ 115 (167)
T PF07035_consen 104 QVLEALRYARQY 115 (167)
T ss_pred CHHHHHHHHHHc
Confidence 888888777764
No 489
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=34.21 E-value=44 Score=19.53 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=13.5
Q ss_pred HHHHHHHhhcCCCccHH
Q 046694 85 KKFFDEMQARNVKPTET 101 (118)
Q Consensus 85 ~~~~~~m~~~g~~~~~~ 101 (118)
..+.++|.++|..|+..
T Consensus 55 ~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 55 LLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHcCCCCChh
Confidence 56788899999988763
No 490
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.73 E-value=1.4e+02 Score=19.50 Aligned_cols=88 Identities=8% Similarity=0.031 Sum_probs=60.6
Q ss_pred HHHHHhcCCHHHHHHHhhhCC-CCCHhhHHHH-----HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC
Q 046694 6 LDFYTRTGRIDLANKIFDRLP-VKDSASWITL-----ILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACSLGG 79 (118)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (118)
-..+..++++++|+..++.-. .+.-..+..+ -+.....|.+++|+..++....++.. ....-.--+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 456778899999998887554 3322233333 34556678999999999987765432 222333356778889
Q ss_pred ChhhHHHHHHHHhhcC
Q 046694 80 LVEKGKKFFDEMQARN 95 (118)
Q Consensus 80 ~~~~a~~~~~~m~~~g 95 (118)
+-++|..-|++-...+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999988776
No 491
>cd08817 CARD_RIG-I_2 Caspase activation and recruitment domain found in RIG-I, second repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), second repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction do
Probab=33.41 E-value=88 Score=17.30 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 046694 33 WITLILGYGMLGELDVAINLFEAMRE 58 (118)
Q Consensus 33 ~~~li~~~~~~~~~~~a~~~~~~m~~ 58 (118)
+.-+...+...|....|.++.+-+.+
T Consensus 37 ceeI~qi~~~kg~ma~aeKl~ecLlR 62 (88)
T cd08817 37 CEEIQQIESQKGPMAGAEKLVECLLR 62 (88)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 33344444455555555555555543
No 492
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=33.41 E-value=61 Score=15.38 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHhcCCChhhHHHHHHHHhhcCCCcc
Q 046694 64 YPVSHIGVLTACSLGGLVEKGKKFFDEMQARNVKPT 99 (118)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 99 (118)
+..|.+..|+.- ..=..+...++.+-+.+.|+.||
T Consensus 12 S~~TVSr~ln~~-~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 12 SKSTVSRVLNGP-PRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp SHHHHHHHHTTC-SSSTHHHHHHHHHHHHHHTB-SS
T ss_pred CHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHCCCCC
Confidence 344444445443 11234456677777788888876
No 493
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=32.58 E-value=2.4e+02 Score=22.00 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=63.4
Q ss_pred HHhcCCHHHHHHHhhhCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChhhH
Q 046694 9 YTRTGRIDLANKIFDRLP---VKDSASWITLILGYGMLGELDVAINLFEAMREDGVEY-YPVSHIGVLTACSLGGLVEKG 84 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 84 (118)
+-...++++|++.|.--. +.|...|..+--.=++.++++-......++.+. .| ....|..+.-+.--.|+...|
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777776332 346666666555556666776666666666554 33 456677777777788888888
Q ss_pred HHHHHHHhhcC-CCccHHHHHHHHHH
Q 046694 85 KKFFDEMQARN-VKPTETHYACMVYL 109 (118)
Q Consensus 85 ~~~~~~m~~~g-~~~~~~t~~~li~~ 109 (118)
..+.++..... -.|+...+.-....
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELL 188 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 88888885544 35666666544433
No 494
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=32.53 E-value=1.3e+02 Score=18.98 Aligned_cols=63 Identities=14% Similarity=0.003 Sum_probs=38.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH-HHHHHHHhcCCChhhHHHHHHHHhhc
Q 046694 29 DSASWITLILGYGMLGELDVAINLFEAMREDGVEYYPVSH-IGVLTACSLGGLVEKGKKFFDEMQAR 94 (118)
Q Consensus 29 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (118)
-..+-.++..++.-.|-+++|.++.+...= -++-.-. .-+|+.|.++.+-.+..++-++..+.
T Consensus 114 kLss~EAlaAaLYI~G~~deA~~lls~F~W---G~~FleLN~e~Le~Y~~a~~s~eVveiq~~~l~~ 177 (179)
T COG2042 114 KLSSAEALAAALYIVGFKDEASELLSKFKW---GHTFLELNKELLEEYSNAEDSAEVVEIQEEYLEK 177 (179)
T ss_pred hhchHHHHHHHHHHhCcHHHHHHHHhhCcc---cHHHHHHhHHHHHHHHhccchHHHHHHHHHHHhc
Confidence 445566777777777888888877766431 1121111 23677788877777777666665443
No 495
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.17 E-value=1.9e+02 Score=20.63 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCccHHHHHHHHHH
Q 046694 32 SWITLILGYGMLGELDVAINLFEAMRE----DGVEYYPVSHIGVLTA 74 (118)
Q Consensus 32 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~ 74 (118)
.+-..-.-||+-|+-+.|++.+.+-.+ -|.+.|++-+..-+.-
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlgl 152 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGL 152 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 344455567777777777777666533 3566666555554443
No 496
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=31.79 E-value=1.5e+02 Score=19.50 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC---ccHHHHHHH--HHHHhcCCChhhHHHHHHHHhhcC
Q 046694 43 LGELDVAINLFEAMREDGVE---YYPVSHIGV--LTACSLGGLVEKGKKFFDEMQARN 95 (118)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l--l~~~~~~~~~~~a~~~~~~m~~~g 95 (118)
.++.++..++++...+..-. -+.+.+|+. |-...+..+++++.+.-++..+.|
T Consensus 192 ~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s~~eg~~~a~e~i~sG 249 (252)
T PF00591_consen 192 GGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASSLEEGVEKAREAIDSG 249 (252)
T ss_dssp HSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 35678888888877543222 266677765 444446778889988888887765
No 497
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=31.58 E-value=2.1e+02 Score=21.08 Aligned_cols=85 Identities=9% Similarity=-0.141 Sum_probs=58.8
Q ss_pred HHhcCCHHHHHHHhhhCCC--CCH-------------hhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCccHHHHHH
Q 046694 9 YTRTGRIDLANKIFDRLPV--KDS-------------ASWITLILGYGMLGELDVAINLFEAMRE---DGVEYYPVSHIG 70 (118)
Q Consensus 9 ~~~~~~~~~a~~~~~~m~~--~~~-------------~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ 70 (118)
+...++.+.|...|++-.. |+. ..|..=-+-..+.|.+.+|.+++.+-.. ++++|+.-.|..
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 3445778888888887652 211 1222223344577899999999999864 356777888888
Q ss_pred HHHHHhcCCChhhHHHHHHHHhh
Q 046694 71 VLTACSLGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~ 93 (118)
.-.+..+.|++++|..--++..+
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhh
Confidence 88888999999998866555433
No 498
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.52 E-value=1.9e+02 Score=20.46 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=51.5
Q ss_pred CHhhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh-cCCChhhHHHHHHHHhh
Q 046694 29 DSASWITL---ILGYGMLGELDVAINLFEAMREDGVEYYPVSHIGVLTACS-LGGLVEKGKKFFDEMQA 93 (118)
Q Consensus 29 ~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~ 93 (118)
|..-|-++ |..+.+.|.+..|+++.+-+.+-...-|+.....+|+.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 55556554 5677888999999999999988765557778888899988 77888888888888754
No 499
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=31.50 E-value=1.7e+02 Score=21.56 Aligned_cols=70 Identities=3% Similarity=0.034 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHcCC-------------CccHHHHHHHHHHHhcCC-------C-------hhhHHHHHHHH-hhcC
Q 046694 44 GELDVAINLFEAMREDGV-------------EYYPVSHIGVLTACSLGG-------L-------VEKGKKFFDEM-QARN 95 (118)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~-------------~p~~~~~~~ll~~~~~~~-------~-------~~~a~~~~~~m-~~~g 95 (118)
..++.+..+++.|...+. +.+...|..+|+.+-... + +....+++++| .+.|
T Consensus 297 ~~p~~s~~i~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sg 376 (454)
T TIGR01219 297 SDPEESRENWQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEAS 376 (454)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcC
Confidence 346666666666654411 124556777777554331 2 33455777777 6688
Q ss_pred CCccHHHHHHHHHHHHHc
Q 046694 96 VKPTETHYACMVYLLIKY 113 (118)
Q Consensus 96 ~~~~~~t~~~li~~~~~~ 113 (118)
+...+..-+.|++++...
T Consensus 377 v~IEp~~~t~Lld~~~~~ 394 (454)
T TIGR01219 377 VDIEPESQTQLLDSTMSL 394 (454)
T ss_pred CcccCHHHHHHHHHHhhc
Confidence 888888888999887654
No 500
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=31.40 E-value=66 Score=16.23 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHhhcCCCc
Q 046694 81 VEKGKKFFDEMQARNVKP 98 (118)
Q Consensus 81 ~~~a~~~~~~m~~~g~~~ 98 (118)
.+...++|+.|.++|+-|
T Consensus 44 ~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHcCCcC
Confidence 445677888888888654
Done!