BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046695
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 336 SLKQEVESNRSEKIQTLQNQL---QLAQKDIATWKSKLNSERKEVSKLQERIKS--LKTS 390
S K+ VES R L N +L ++ W++ NSE K S
Sbjct: 14 SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPAS 73
Query: 391 LSD--RDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREW 440
+S+ + H V+D+K P+ ++A IL YE+ L +L EW
Sbjct: 74 ISETAKGHTVKDIKEYYHVYPWGRIPD--SLRANILAYYEKANTLASELLEW 123
>pdb|2EFR|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFR|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 1.8 Angstroms Resolution
pdb|2EFS|A Chain A, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|B Chain B, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|C Chain C, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
pdb|2EFS|D Chain D, Crystal Structure Of The C-Terminal Tropomyosin Fragment
With N- And C-Terminal Extensions Of The Leucine Zipper
At 2.0 Angstroms Resolution
Length = 155
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Query: 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQ 353
+L++ + L + + L+N+V L + L +E+ LSE + A L++E ++T+
Sbjct: 4 QLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEE--------LKTVT 55
Query: 354 NQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413
N L+ + + K + +E+ L +++K +T + V L+ ++ D E +++
Sbjct: 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115
Query: 414 PEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIK 455
+K + KA + EE L +++ E S+ LE+E+ +K
Sbjct: 116 AQKLKYKA----ISEEMKQLEDKVEELLSKNYHLENEVARLK 153
>pdb|2XV9|A Chain A, The Solution Structure Of Aba-1a Saturated With Oleic Acid
Length = 134
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 197 ELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEE 256
ELE ++ ++L ++ A E +KG E + +VG EK L N K +++E
Sbjct: 41 ELEAKILHYYDELEGDAKKEATEHLKGGCRE----ILKHVVGEEKAAELKNLKDSGASKE 96
Query: 257 ILRLKIE--LQKYNSSETNNYLQADFGSPA 284
L+ K+E L E Y+ ADFG PA
Sbjct: 97 ELKAKVEEALHAVTDEEKKQYI-ADFG-PA 124
>pdb|2E7S|A Chain A, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|B Chain B, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|C Chain C, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|D Chain D, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|E Chain E, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|F Chain F, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|G Chain G, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|H Chain H, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|I Chain I, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|J Chain J, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|K Chain K, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|L Chain L, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|M Chain M, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|N Chain N, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|O Chain O, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|P Chain P, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|Q Chain Q, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|R Chain R, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|S Chain S, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|T Chain T, Crystal Structure Of The Yeast Sec2p Gef Domain
Length = 135
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 351 TLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVS 406
+L+ QL + K IA+ K+ + + ++L+E +LK LSDRD EV+ L+ ++
Sbjct: 5 SLEEQLNKSLKTIASQKAAIEN----YNQLKEDYNTLKRELSDRDDEVKRLREDIA 56
>pdb|2D3E|A Chain A, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|B Chain B, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|C Chain C, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
pdb|2D3E|D Chain D, Crystal Structure Of The C-Terminal Fragment Of Rabbit
Skeletal Alpha-Tropomyosin
Length = 134
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 295 LQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQN 354
+++ + L + + L+N+V L + L +E+ LSE + A L++E ++T+ N
Sbjct: 1 MEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKCAELEEE--------LKTVTN 52
Query: 355 QLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414
L+ + + K + +E+ L +++K +T + V L+ ++ D E +++
Sbjct: 53 NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 112
Query: 415 EKAQIKA 421
+K + KA
Sbjct: 113 QKLKYKA 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,423,875
Number of Sequences: 62578
Number of extensions: 581347
Number of successful extensions: 1990
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1846
Number of HSP's gapped (non-prelim): 162
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)