Query 046695
Match_columns 604
No_of_seqs 142 out of 161
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:33:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07765 KIP1: KIP1-like prote 100.0 1.3E-41 2.7E-46 281.0 7.8 74 16-89 1-74 (74)
2 PRK02224 chromosome segregatio 99.3 6E-08 1.3E-12 114.8 47.8 125 471-595 596-727 (880)
3 TIGR02168 SMC_prok_B chromosom 99.3 1.5E-08 3.2E-13 121.7 40.5 133 419-555 808-940 (1179)
4 TIGR02169 SMC_prok_A chromosom 99.3 5.3E-08 1.1E-12 117.4 43.2 37 231-267 167-203 (1164)
5 PRK02224 chromosome segregatio 99.2 2.6E-07 5.7E-12 109.4 45.3 34 234-267 363-396 (880)
6 TIGR02169 SMC_prok_A chromosom 99.2 8.7E-08 1.9E-12 115.5 41.7 12 583-594 535-546 (1164)
7 PRK03918 chromosome segregatio 99.2 4.6E-07 9.9E-12 107.2 44.9 17 567-583 712-728 (880)
8 TIGR02168 SMC_prok_B chromosom 99.2 6.4E-08 1.4E-12 116.3 38.3 126 419-548 815-940 (1179)
9 PRK03918 chromosome segregatio 99.1 3.6E-06 7.8E-11 99.7 48.5 94 500-593 631-731 (880)
10 COG1196 Smc Chromosome segrega 99.1 8.6E-07 1.9E-11 108.4 41.5 61 528-588 968-1029(1163)
11 KOG0161 Myosin class II heavy 99.1 3.8E-06 8.2E-11 104.9 45.3 94 297-391 1041-1134(1930)
12 COG1196 Smc Chromosome segrega 99.0 5.5E-06 1.2E-10 101.5 45.3 89 465-553 402-490 (1163)
13 KOG0161 Myosin class II heavy 99.0 2.6E-06 5.7E-11 106.3 42.4 74 23-102 577-661 (1930)
14 KOG4674 Uncharacterized conser 99.0 1.2E-05 2.6E-10 99.2 46.4 368 191-596 634-1024(1822)
15 TIGR00606 rad50 rad50. This fa 99.0 1E-05 2.2E-10 100.2 46.6 55 465-519 989-1045(1311)
16 PF10174 Cast: RIM-binding pro 99.0 4.1E-05 8.8E-10 89.6 47.1 83 465-547 341-423 (775)
17 KOG4674 Uncharacterized conser 98.9 1.3E-05 2.9E-10 98.9 41.7 96 238-340 728-834 (1822)
18 PRK01156 chromosome segregatio 98.9 0.00011 2.4E-09 87.6 47.6 16 28-43 103-118 (895)
19 PRK01156 chromosome segregatio 98.9 4.3E-05 9.3E-10 91.1 43.9 19 191-209 303-321 (895)
20 PF07888 CALCOCO1: Calcium bin 98.9 5.4E-05 1.2E-09 84.9 41.4 168 378-545 279-453 (546)
21 KOG0971 Microtubule-associated 98.9 0.00012 2.5E-09 84.8 44.2 63 504-566 492-554 (1243)
22 TIGR00606 rad50 rad50. This fa 98.9 1.4E-05 3E-10 99.1 40.2 15 195-209 641-655 (1311)
23 PF10174 Cast: RIM-binding pro 98.9 5.4E-05 1.2E-09 88.6 41.7 356 225-592 112-537 (775)
24 PF00261 Tropomyosin: Tropomyo 98.9 3.8E-06 8.3E-11 85.5 28.6 95 314-409 11-105 (237)
25 PF07888 CALCOCO1: Calcium bin 98.8 0.00011 2.3E-09 82.6 42.0 174 395-568 282-462 (546)
26 PF00261 Tropomyosin: Tropomyo 98.8 3.4E-06 7.3E-11 85.9 26.8 145 234-414 15-159 (237)
27 PF00038 Filament: Intermediat 98.8 2E-05 4.3E-10 82.6 32.5 58 465-522 193-250 (312)
28 KOG4643 Uncharacterized coiled 98.8 0.00018 3.8E-09 84.2 40.6 241 348-588 309-583 (1195)
29 PF05701 WEMBL: Weak chloropla 98.7 0.0006 1.3E-08 77.2 44.5 21 195-215 36-56 (522)
30 KOG0964 Structural maintenance 98.7 8.8E-05 1.9E-09 86.4 36.0 105 478-585 415-524 (1200)
31 KOG4643 Uncharacterized coiled 98.7 0.001 2.2E-08 78.2 43.9 68 465-532 486-553 (1195)
32 KOG0996 Structural maintenance 98.7 0.00011 2.4E-09 87.1 36.5 251 312-581 378-646 (1293)
33 KOG0933 Structural maintenance 98.6 0.00044 9.5E-09 81.2 39.8 254 311-572 748-1029(1174)
34 PHA02562 46 endonuclease subun 98.6 9.6E-05 2.1E-09 83.3 34.2 106 427-533 298-403 (562)
35 PF05701 WEMBL: Weak chloropla 98.6 0.0008 1.7E-08 76.2 40.8 13 329-341 176-188 (522)
36 KOG0976 Rho/Rac1-interacting s 98.6 0.0013 2.9E-08 75.5 41.3 164 381-544 241-407 (1265)
37 PF00038 Filament: Intermediat 98.6 0.00026 5.7E-09 74.2 32.6 69 464-532 213-285 (312)
38 KOG0250 DNA repair protein RAD 98.5 0.00022 4.8E-09 84.5 33.8 175 419-604 356-556 (1074)
39 KOG0977 Nuclear envelope prote 98.5 0.0001 2.2E-09 82.8 29.2 21 422-442 198-218 (546)
40 KOG0996 Structural maintenance 98.5 0.00086 1.9E-08 79.9 37.1 240 312-559 335-592 (1293)
41 KOG0933 Structural maintenance 98.5 0.00066 1.4E-08 79.8 35.6 152 419-574 820-1002(1174)
42 KOG0964 Structural maintenance 98.5 0.0019 4.1E-08 75.8 38.9 338 231-588 675-1036(1200)
43 PF12128 DUF3584: Protein of u 98.4 0.0052 1.1E-07 76.0 44.7 65 464-528 604-668 (1201)
44 KOG0977 Nuclear envelope prote 98.4 0.00052 1.1E-08 77.2 32.3 118 294-412 96-220 (546)
45 KOG0250 DNA repair protein RAD 98.4 0.0013 2.8E-08 78.2 36.4 118 468-585 338-459 (1074)
46 KOG0971 Microtubule-associated 98.4 0.0094 2E-07 69.6 40.3 170 379-553 407-586 (1243)
47 PRK04778 septation ring format 98.4 0.0028 6.1E-08 72.5 36.7 64 348-411 276-339 (569)
48 PHA02562 46 endonuclease subun 98.3 0.00087 1.9E-08 75.6 31.3 62 464-525 341-402 (562)
49 PRK11637 AmiB activator; Provi 98.3 0.00063 1.4E-08 75.0 29.3 53 349-401 77-129 (428)
50 PF09730 BicD: Microtubule-ass 98.3 0.011 2.4E-07 68.9 40.3 89 190-305 31-119 (717)
51 PF12128 DUF3584: Protein of u 98.3 0.027 5.8E-07 69.9 46.3 25 240-264 510-534 (1201)
52 PF14915 CCDC144C: CCDC144C pr 98.3 0.0062 1.4E-07 63.7 34.3 217 315-553 28-258 (305)
53 PF05483 SCP-1: Synaptonemal c 98.3 0.015 3.3E-07 66.4 42.8 118 471-588 591-719 (786)
54 PRK11637 AmiB activator; Provi 98.3 0.0014 3.1E-08 72.1 31.3 47 348-394 83-129 (428)
55 COG1340 Uncharacterized archae 98.3 0.0088 1.9E-07 62.8 34.5 173 350-534 65-246 (294)
56 PF15070 GOLGA2L5: Putative go 98.3 0.0011 2.3E-08 76.4 30.3 158 419-588 85-249 (617)
57 KOG0976 Rho/Rac1-interacting s 98.2 0.022 4.7E-07 66.0 40.6 80 489-568 331-410 (1265)
58 PF15070 GOLGA2L5: Putative go 98.2 0.0038 8.2E-08 72.0 34.3 294 296-593 21-384 (617)
59 KOG4673 Transcription factor T 98.2 0.023 4.9E-07 65.0 38.6 32 568-599 611-642 (961)
60 COG1340 Uncharacterized archae 98.2 0.0077 1.7E-07 63.2 31.3 48 363-410 36-83 (294)
61 PF06160 EzrA: Septation ring 98.1 0.029 6.4E-07 64.2 37.6 66 348-413 272-337 (560)
62 PRK04778 septation ring format 98.1 0.039 8.5E-07 63.3 43.6 124 465-592 308-434 (569)
63 PRK04863 mukB cell division pr 98.1 0.022 4.7E-07 71.7 39.0 162 295-458 305-479 (1486)
64 PRK04863 mukB cell division pr 98.1 0.021 4.6E-07 71.7 38.1 23 554-576 658-680 (1486)
65 COG4942 Membrane-bound metallo 98.0 0.0099 2.1E-07 65.2 30.7 92 480-572 167-258 (420)
66 KOG0995 Centromere-associated 98.0 0.046 1E-06 61.7 37.6 115 446-578 429-548 (581)
67 KOG0963 Transcription factor/C 98.0 0.008 1.7E-07 68.1 30.3 104 378-484 231-334 (629)
68 COG5185 HEC1 Protein involved 98.0 0.018 3.9E-07 63.4 31.1 90 464-553 484-581 (622)
69 PF01576 Myosin_tail_1: Myosin 97.9 1.8E-06 3.8E-11 102.6 0.0 162 233-409 327-488 (859)
70 PF09726 Macoilin: Transmembra 97.9 0.012 2.6E-07 68.8 30.2 94 309-403 423-516 (697)
71 KOG1029 Endocytic adaptor prot 97.9 0.093 2E-06 60.9 36.1 163 357-530 412-584 (1118)
72 KOG0963 Transcription factor/C 97.9 0.084 1.8E-06 60.2 37.7 83 377-459 184-266 (629)
73 PF01576 Myosin_tail_1: Myosin 97.9 3.2E-06 7E-11 100.4 0.0 210 322-536 261-481 (859)
74 COG1579 Zn-ribbon protein, pos 97.8 0.0041 8.8E-08 63.7 22.1 104 348-458 25-133 (239)
75 KOG0018 Structural maintenance 97.8 0.0062 1.4E-07 72.4 26.1 171 367-542 710-889 (1141)
76 PF06160 EzrA: Septation ring 97.8 0.083 1.8E-06 60.6 34.8 91 468-558 345-435 (560)
77 KOG0612 Rho-associated, coiled 97.8 0.17 3.7E-06 61.4 41.2 11 9-19 256-266 (1317)
78 COG4942 Membrane-bound metallo 97.8 0.04 8.7E-07 60.6 29.6 49 499-547 200-248 (420)
79 PF05667 DUF812: Protein of un 97.7 0.14 3.1E-06 59.1 34.8 231 318-554 328-588 (594)
80 PF09726 Macoilin: Transmembra 97.7 0.03 6.6E-07 65.6 29.8 68 495-562 587-654 (697)
81 PF14662 CCDC155: Coiled-coil 97.7 0.034 7.3E-07 55.1 25.6 113 423-553 76-188 (193)
82 KOG0946 ER-Golgi vesicle-tethe 97.7 0.041 8.9E-07 64.1 29.8 95 424-522 788-882 (970)
83 COG0419 SbcC ATPase involved i 97.7 0.23 5E-06 60.0 45.4 43 37-82 118-168 (908)
84 PF05667 DUF812: Protein of un 97.7 0.12 2.5E-06 59.7 33.6 80 511-594 493-572 (594)
85 KOG0995 Centromere-associated 97.7 0.17 3.6E-06 57.3 39.1 111 294-404 277-393 (581)
86 PF05911 DUF869: Plant protein 97.7 0.17 3.7E-06 59.8 34.9 120 334-458 591-710 (769)
87 KOG0612 Rho-associated, coiled 97.7 0.11 2.4E-06 62.9 32.9 22 61-92 273-294 (1317)
88 PF14662 CCDC155: Coiled-coil 97.7 0.058 1.3E-06 53.5 25.8 123 395-521 66-191 (193)
89 COG0419 SbcC ATPase involved i 97.6 0.3 6.6E-06 59.0 46.2 14 189-202 235-248 (908)
90 TIGR03185 DNA_S_dndD DNA sulfu 97.6 0.24 5.2E-06 57.7 37.0 22 379-400 266-287 (650)
91 KOG4673 Transcription factor T 97.6 0.22 4.8E-06 57.3 44.7 44 224-267 399-442 (961)
92 KOG0018 Structural maintenance 97.6 0.12 2.7E-06 61.9 32.2 99 466-564 380-478 (1141)
93 TIGR03185 DNA_S_dndD DNA sulfu 97.6 0.22 4.9E-06 58.0 34.4 45 295-339 207-251 (650)
94 KOG0980 Actin-binding protein 97.6 0.13 2.8E-06 60.5 30.9 59 464-525 512-570 (980)
95 PF09755 DUF2046: Uncharacteri 97.5 0.11 2.4E-06 55.0 27.7 24 189-212 23-46 (310)
96 KOG0946 ER-Golgi vesicle-tethe 97.5 0.052 1.1E-06 63.2 26.6 37 517-553 905-941 (970)
97 KOG0994 Extracellular matrix g 97.5 0.46 1E-05 57.5 47.1 87 275-374 1483-1569(1758)
98 PF05483 SCP-1: Synaptonemal c 97.5 0.36 7.9E-06 55.7 42.9 94 467-560 471-564 (786)
99 TIGR02680 conserved hypothetic 97.5 0.25 5.4E-06 62.3 34.5 31 563-593 960-990 (1353)
100 KOG0999 Microtubule-associated 97.5 0.28 6E-06 55.3 30.7 150 419-586 105-260 (772)
101 PRK09039 hypothetical protein; 97.5 0.025 5.5E-07 61.0 22.6 99 485-597 113-212 (343)
102 COG4372 Uncharacterized protei 97.5 0.25 5.5E-06 53.6 29.4 37 308-344 78-114 (499)
103 COG3883 Uncharacterized protei 97.4 0.17 3.7E-06 52.7 27.3 83 468-550 135-217 (265)
104 KOG1029 Endocytic adaptor prot 97.4 0.43 9.4E-06 55.7 33.6 73 419-495 442-514 (1118)
105 COG1579 Zn-ribbon protein, pos 97.4 0.018 3.9E-07 59.1 19.5 40 419-458 108-147 (239)
106 KOG0994 Extracellular matrix g 97.4 0.61 1.3E-05 56.5 37.2 17 33-49 1201-1217(1758)
107 PF05557 MAD: Mitotic checkpoi 97.4 0.0023 4.9E-08 75.2 14.8 45 534-582 603-647 (722)
108 PF12718 Tropomyosin_1: Tropom 97.4 0.028 6E-07 53.5 19.2 63 350-412 3-65 (143)
109 PF09787 Golgin_A5: Golgin sub 97.4 0.43 9.2E-06 54.2 39.7 145 423-587 276-431 (511)
110 PF05622 HOOK: HOOK protein; 97.3 4.7E-05 1E-09 89.0 0.0 22 249-270 309-330 (713)
111 PF05557 MAD: Mitotic checkpoi 97.2 0.0017 3.7E-08 76.2 11.6 26 422-447 400-425 (722)
112 PF15619 Lebercilin: Ciliary p 97.2 0.17 3.7E-06 50.6 23.2 126 422-560 62-187 (194)
113 KOG0962 DNA repair protein RAD 97.2 1.2 2.6E-05 55.2 38.9 103 489-593 1009-1119(1294)
114 PF09730 BicD: Microtubule-ass 97.1 0.98 2.1E-05 53.2 39.7 10 577-586 475-484 (717)
115 COG4372 Uncharacterized protei 97.1 0.63 1.4E-05 50.6 31.6 55 353-407 108-162 (499)
116 PRK11281 hypothetical protein; 97.1 1.4 3.1E-05 54.5 35.9 20 248-267 87-106 (1113)
117 PRK10929 putative mechanosensi 97.1 1.4 3.1E-05 54.4 37.3 48 346-393 186-233 (1109)
118 PF04849 HAP1_N: HAP1 N-termin 97.0 0.44 9.5E-06 50.7 25.1 138 421-565 160-297 (306)
119 PF10473 CENP-F_leu_zip: Leuci 97.0 0.099 2.1E-06 49.7 18.3 27 489-515 74-100 (140)
120 PF15619 Lebercilin: Ciliary p 96.9 0.52 1.1E-05 47.2 24.9 74 419-493 73-151 (194)
121 PF05622 HOOK: HOOK protein; 96.9 0.00021 4.6E-09 83.6 0.0 28 493-520 620-647 (713)
122 COG3883 Uncharacterized protei 96.9 0.69 1.5E-05 48.3 25.7 42 465-506 167-208 (265)
123 KOG2129 Uncharacterized conser 96.9 0.95 2E-05 49.7 27.9 78 511-593 248-330 (552)
124 KOG2991 Splicing regulator [RN 96.8 0.36 7.7E-06 49.9 21.7 114 419-532 175-301 (330)
125 PF08317 Spc7: Spc7 kinetochor 96.8 0.93 2E-05 48.5 26.3 60 467-526 209-268 (325)
126 PF13851 GAS: Growth-arrest sp 96.8 0.65 1.4E-05 46.6 23.2 95 360-462 33-127 (201)
127 PF04849 HAP1_N: HAP1 N-termin 96.7 0.91 2E-05 48.4 25.0 8 132-139 6-13 (306)
128 PF13514 AAA_27: AAA domain 96.7 2.7 6E-05 52.1 47.0 79 508-586 895-978 (1111)
129 PF10473 CENP-F_leu_zip: Leuci 96.6 0.5 1.1E-05 45.0 20.2 62 491-552 48-109 (140)
130 PF08317 Spc7: Spc7 kinetochor 96.6 1.3 2.9E-05 47.4 27.2 20 348-367 76-95 (325)
131 PF09728 Taxilin: Myosin-like 96.6 1.4 3E-05 47.1 36.6 20 548-567 262-281 (309)
132 TIGR02680 conserved hypothetic 96.6 3.7 8.1E-05 52.1 33.1 9 587-595 1050-1058(1353)
133 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.5 0.36 7.7E-06 45.1 18.5 68 349-416 26-93 (132)
134 KOG0999 Microtubule-associated 96.5 2.2 4.7E-05 48.5 29.6 39 551-589 318-359 (772)
135 TIGR03007 pepcterm_ChnLen poly 96.5 0.27 6E-06 55.0 20.7 14 396-409 254-267 (498)
136 KOG0978 E3 ubiquitin ligase in 96.5 2.8 6E-05 49.2 39.0 23 188-210 260-282 (698)
137 KOG0980 Actin-binding protein 96.4 3.2 6.9E-05 49.5 33.5 16 69-84 190-205 (980)
138 KOG1003 Actin filament-coating 96.4 1.2 2.7E-05 44.4 26.8 63 347-409 11-73 (205)
139 KOG1003 Actin filament-coating 96.4 1.3 2.8E-05 44.3 23.3 96 310-406 24-119 (205)
140 KOG4593 Mitotic checkpoint pro 96.3 3.2 7E-05 48.3 43.7 93 468-560 406-498 (716)
141 PF09789 DUF2353: Uncharacteri 96.3 0.77 1.7E-05 49.2 21.4 151 348-504 10-177 (319)
142 PF13851 GAS: Growth-arrest sp 96.2 1.5 3.3E-05 44.0 22.1 147 419-573 18-167 (201)
143 PF09787 Golgin_A5: Golgin sub 96.2 3.3 7.3E-05 47.1 31.4 23 190-212 113-135 (511)
144 smart00787 Spc7 Spc7 kinetocho 96.1 0.21 4.6E-06 53.3 16.4 112 298-410 145-260 (312)
145 PF09789 DUF2353: Uncharacteri 96.1 2.6 5.6E-05 45.3 26.3 94 313-407 4-111 (319)
146 PF15254 CCDC14: Coiled-coil d 96.0 1.6 3.5E-05 51.2 23.5 179 254-458 355-538 (861)
147 PF09755 DUF2046: Uncharacteri 96.0 2.7 5.9E-05 44.8 33.1 29 430-458 137-165 (310)
148 KOG4593 Mitotic checkpoint pro 96.0 4.5 9.7E-05 47.2 43.8 77 464-540 409-485 (716)
149 TIGR01005 eps_transp_fam exopo 96.0 1.4 3E-05 52.2 23.8 34 513-546 373-406 (754)
150 PF10146 zf-C4H2: Zinc finger- 96.0 0.29 6.4E-06 50.1 15.8 89 464-552 15-103 (230)
151 TIGR01843 type_I_hlyD type I s 95.9 2 4.3E-05 46.5 23.2 12 311-322 81-92 (423)
152 PF05911 DUF869: Plant protein 95.9 3.7 7.9E-05 49.0 26.6 80 379-458 89-171 (769)
153 TIGR01005 eps_transp_fam exopo 95.9 0.37 7.9E-06 57.0 18.7 26 348-373 238-263 (754)
154 KOG4809 Rab6 GTPase-interactin 95.9 4.3 9.3E-05 46.2 26.4 66 349-414 347-412 (654)
155 TIGR03007 pepcterm_ChnLen poly 95.8 1.8 4E-05 48.5 23.1 62 473-534 316-380 (498)
156 PF13870 DUF4201: Domain of un 95.8 2.1 4.6E-05 41.7 21.9 126 380-529 47-172 (177)
157 KOG0979 Structural maintenance 95.8 6.8 0.00015 47.5 28.8 37 422-458 760-796 (1072)
158 PF05010 TACC: Transforming ac 95.8 2.6 5.6E-05 42.7 25.6 71 348-418 70-140 (207)
159 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.6 1.5 3.4E-05 40.9 18.1 8 431-438 62-69 (132)
160 PRK10246 exonuclease subunit S 95.6 8.6 0.00019 47.6 40.5 16 585-600 493-509 (1047)
161 PRK11281 hypothetical protein; 95.6 9.2 0.0002 47.6 38.9 40 419-458 290-329 (1113)
162 PF12325 TMF_TATA_bd: TATA ele 95.5 0.58 1.3E-05 43.4 14.3 71 486-556 42-115 (120)
163 KOG0962 DNA repair protein RAD 95.4 11 0.00023 47.2 39.6 64 496-564 972-1035(1294)
164 KOG4677 Golgi integral membran 95.3 6.1 0.00013 44.0 25.0 83 360-442 308-390 (554)
165 PF09728 Taxilin: Myosin-like 95.3 5.2 0.00011 42.8 38.2 48 349-396 109-156 (309)
166 smart00787 Spc7 Spc7 kinetocho 95.2 5.3 0.00011 42.9 24.8 128 467-595 151-289 (312)
167 PF05010 TACC: Transforming ac 95.2 3.9 8.6E-05 41.4 29.5 133 382-535 69-201 (207)
168 PRK10246 exonuclease subunit S 95.2 12 0.00025 46.5 37.0 10 220-229 505-515 (1047)
169 PRK10929 putative mechanosensi 95.1 12 0.00027 46.5 38.5 47 500-553 381-427 (1109)
170 PF10168 Nup88: Nuclear pore c 95.1 2.3 4.9E-05 50.5 21.1 67 346-412 564-630 (717)
171 TIGR00634 recN DNA repair prot 95.0 4.8 0.0001 46.3 23.2 6 140-145 24-29 (563)
172 KOG1899 LAR transmembrane tyro 95.0 3.2 6.8E-05 47.9 20.6 141 419-595 179-320 (861)
173 TIGR03017 EpsF chain length de 94.8 2.2 4.8E-05 47.0 19.3 11 578-588 418-428 (444)
174 KOG0979 Structural maintenance 94.8 13 0.00028 45.2 31.7 34 306-339 176-209 (1072)
175 COG4477 EzrA Negative regulato 94.7 9.9 0.00021 43.4 35.6 231 302-553 253-498 (570)
176 KOG0978 E3 ubiquitin ligase in 94.7 12 0.00026 44.2 39.2 120 464-584 465-602 (698)
177 PF10186 Atg14: UV radiation r 94.6 5.8 0.00013 40.9 20.7 14 563-576 142-155 (302)
178 PF12795 MscS_porin: Mechanose 94.5 6.3 0.00014 40.3 23.6 55 469-523 159-213 (240)
179 TIGR01000 bacteriocin_acc bact 94.5 8.9 0.00019 42.8 23.1 13 330-342 95-107 (457)
180 TIGR00634 recN DNA repair prot 94.5 11 0.00024 43.3 24.4 19 316-334 159-177 (563)
181 PLN03229 acetyl-coenzyme A car 94.5 8.5 0.00018 45.6 23.1 17 33-49 101-117 (762)
182 PF06008 Laminin_I: Laminin Do 94.4 7.3 0.00016 40.4 30.6 69 331-400 44-112 (264)
183 PF15397 DUF4618: Domain of un 94.4 7.6 0.00017 40.6 25.8 157 354-536 63-227 (258)
184 PF13870 DUF4201: Domain of un 94.4 5.4 0.00012 38.9 23.0 118 421-556 42-171 (177)
185 PF12325 TMF_TATA_bd: TATA ele 94.4 1.9 4.2E-05 40.0 14.6 89 433-525 21-112 (120)
186 TIGR03017 EpsF chain length de 94.2 11 0.00023 41.6 24.5 29 515-543 341-369 (444)
187 KOG1937 Uncharacterized conser 94.2 11 0.00025 42.0 32.6 24 571-594 490-513 (521)
188 TIGR01000 bacteriocin_acc bact 94.2 12 0.00025 41.9 25.1 28 315-342 94-121 (457)
189 PF06818 Fez1: Fez1; InterPro 94.2 7 0.00015 39.4 20.7 60 533-592 134-200 (202)
190 PF07111 HCR: Alpha helical co 94.0 16 0.00035 42.9 34.6 44 507-550 587-630 (739)
191 PRK10869 recombination and rep 94.0 15 0.00033 42.4 25.6 10 139-148 23-32 (553)
192 COG4477 EzrA Negative regulato 93.9 14 0.00031 42.1 31.4 79 475-553 355-433 (570)
193 KOG4360 Uncharacterized coiled 93.9 14 0.0003 42.0 22.3 70 488-557 233-302 (596)
194 KOG0243 Kinesin-like protein [ 93.9 21 0.00045 43.9 31.3 18 250-267 406-423 (1041)
195 PF12795 MscS_porin: Mechanose 93.8 8.8 0.00019 39.2 22.8 24 538-561 193-216 (240)
196 PF15066 CAGE1: Cancer-associa 93.6 15 0.00033 41.2 22.3 12 140-151 194-205 (527)
197 KOG0243 Kinesin-like protein [ 93.6 24 0.00052 43.4 38.8 18 232-249 409-426 (1041)
198 PF10146 zf-C4H2: Zinc finger- 93.4 2.6 5.6E-05 43.4 14.8 29 483-511 55-83 (230)
199 PF11559 ADIP: Afadin- and alp 93.3 6.4 0.00014 37.3 16.5 24 427-450 125-148 (151)
200 PF08614 ATG16: Autophagy prot 93.3 1.1 2.4E-05 44.4 11.8 19 74-92 19-37 (194)
201 PF13514 AAA_27: AAA domain 93.2 29 0.00063 43.3 41.1 30 238-267 663-692 (1111)
202 PF06008 Laminin_I: Laminin Do 93.2 12 0.00026 38.7 28.9 42 348-389 74-115 (264)
203 PF10212 TTKRSYEDQ: Predicted 93.1 20 0.00043 41.0 22.5 29 506-534 484-512 (518)
204 PLN03229 acetyl-coenzyme A car 92.9 24 0.00053 41.9 23.2 15 253-267 434-448 (762)
205 PF04111 APG6: Autophagy prote 92.9 2.1 4.5E-05 45.9 13.9 41 468-508 51-91 (314)
206 KOG0249 LAR-interacting protei 92.9 13 0.00029 43.7 20.6 15 395-409 111-125 (916)
207 PF09304 Cortex-I_coil: Cortex 92.8 7.4 0.00016 35.5 15.4 57 477-533 40-96 (107)
208 PF09304 Cortex-I_coil: Cortex 92.6 4.9 0.00011 36.6 13.6 67 350-416 12-78 (107)
209 PF06818 Fez1: Fez1; InterPro 92.5 13 0.00029 37.5 22.6 44 348-391 39-82 (202)
210 PF10168 Nup88: Nuclear pore c 92.4 13 0.00029 44.2 20.9 22 381-402 564-585 (717)
211 KOG1899 LAR transmembrane tyro 92.4 21 0.00045 41.6 21.2 140 294-458 108-247 (861)
212 PF10481 CENP-F_N: Cenp-F N-te 92.4 15 0.00032 38.8 18.5 104 377-484 20-133 (307)
213 PF08614 ATG16: Autophagy prot 92.4 1.9 4.2E-05 42.7 12.1 61 493-553 121-181 (194)
214 KOG1853 LIS1-interacting prote 92.4 16 0.00034 38.1 20.4 8 382-389 66-73 (333)
215 KOG0804 Cytoplasmic Zn-finger 92.0 2.9 6.4E-05 46.5 13.7 21 346-366 381-401 (493)
216 KOG0249 LAR-interacting protei 92.0 27 0.00058 41.3 21.6 41 292-332 93-133 (916)
217 PF10267 Tmemb_cc2: Predicted 91.8 21 0.00045 39.6 20.1 23 245-267 266-288 (395)
218 PF15450 DUF4631: Domain of un 91.5 30 0.00064 39.5 36.4 105 384-498 339-443 (531)
219 PF10212 TTKRSYEDQ: Predicted 91.5 30 0.00066 39.5 22.4 97 351-447 417-513 (518)
220 KOG4360 Uncharacterized coiled 91.5 10 0.00022 43.0 17.2 99 434-543 204-302 (596)
221 KOG2129 Uncharacterized conser 91.4 27 0.00059 38.8 25.8 24 189-212 46-69 (552)
222 PF13166 AAA_13: AAA domain 91.4 35 0.00076 40.0 27.7 19 190-208 93-111 (712)
223 PF07111 HCR: Alpha helical co 91.3 36 0.00079 40.1 43.3 23 570-592 611-633 (739)
224 COG2433 Uncharacterized conser 90.9 4.1 9E-05 46.9 13.9 28 431-458 418-445 (652)
225 COG4026 Uncharacterized protei 90.9 2.3 4.9E-05 43.4 10.6 73 471-543 132-204 (290)
226 PF15066 CAGE1: Cancer-associa 90.8 32 0.0007 38.7 25.3 27 481-507 478-504 (527)
227 PF04582 Reo_sigmaC: Reovirus 90.7 0.45 9.7E-06 51.0 5.9 94 464-557 60-153 (326)
228 KOG1853 LIS1-interacting prote 90.6 24 0.00052 36.9 21.3 74 378-458 48-121 (333)
229 COG2433 Uncharacterized conser 90.5 3.4 7.5E-05 47.5 12.8 73 382-455 436-508 (652)
230 PF04012 PspA_IM30: PspA/IM30 90.4 21 0.00046 35.8 21.6 41 328-369 33-73 (221)
231 PF09738 DUF2051: Double stran 90.1 5.9 0.00013 42.4 13.6 85 473-557 83-167 (302)
232 PF05384 DegS: Sensor protein 90.1 20 0.00043 35.0 20.6 137 410-556 16-152 (159)
233 PF00769 ERM: Ezrin/radixin/mo 90.0 21 0.00045 37.0 17.3 18 579-596 219-236 (246)
234 PF14197 Cep57_CLD_2: Centroso 89.6 4.5 9.8E-05 34.0 9.8 66 492-557 2-67 (69)
235 PF08647 BRE1: BRE1 E3 ubiquit 89.2 11 0.00023 33.5 12.4 84 468-551 11-94 (96)
236 PRK10869 recombination and rep 89.1 49 0.0011 38.2 22.2 32 467-498 303-334 (553)
237 PF10498 IFT57: Intra-flagella 89.0 16 0.00034 40.1 16.1 18 253-270 189-206 (359)
238 KOG4809 Rab6 GTPase-interactin 88.9 50 0.0011 38.0 27.6 32 419-450 440-471 (654)
239 COG1842 PspA Phage shock prote 88.9 30 0.00066 35.5 17.5 47 322-369 28-74 (225)
240 KOG0982 Centrosomal protein Nu 88.7 45 0.00098 37.3 23.6 24 570-593 446-471 (502)
241 PF10498 IFT57: Intra-flagella 88.6 15 0.00032 40.3 15.6 22 282-303 187-208 (359)
242 PF11559 ADIP: Afadin- and alp 88.6 22 0.00048 33.6 17.4 8 259-266 6-13 (151)
243 COG4026 Uncharacterized protei 88.2 3.8 8.2E-05 41.9 9.9 47 467-513 156-202 (290)
244 PF02994 Transposase_22: L1 tr 87.2 0.93 2E-05 49.6 5.5 61 506-566 141-201 (370)
245 PF13166 AAA_13: AAA domain 87.0 70 0.0015 37.6 26.7 27 189-215 85-111 (712)
246 KOG0239 Kinesin (KAR3 subfamil 87.0 74 0.0016 37.8 22.2 58 478-535 224-281 (670)
247 PF15397 DUF4618: Domain of un 86.5 46 0.001 35.0 30.2 19 440-458 118-136 (258)
248 PRK09343 prefoldin subunit bet 86.2 13 0.00027 34.5 11.6 29 425-453 11-39 (121)
249 COG1842 PspA Phage shock prote 86.2 44 0.00095 34.4 22.4 56 361-416 92-147 (225)
250 PF10481 CENP-F_N: Cenp-F N-te 86.1 36 0.00078 36.0 15.8 56 475-530 61-116 (307)
251 PF07106 TBPIP: Tat binding pr 86.1 9.7 0.00021 36.8 11.3 52 533-584 112-164 (169)
252 TIGR02977 phageshock_pspA phag 86.0 41 0.0009 34.0 23.2 40 329-369 35-74 (219)
253 PF05384 DegS: Sensor protein 85.7 37 0.0008 33.1 20.2 37 419-455 89-125 (159)
254 PRK10884 SH3 domain-containing 85.6 11 0.00024 38.1 11.7 21 311-331 93-113 (206)
255 KOG0982 Centrosomal protein Nu 85.5 67 0.0015 36.0 24.4 6 103-108 18-23 (502)
256 PF11932 DUF3450: Protein of u 85.5 47 0.001 34.2 18.2 55 468-522 43-97 (251)
257 KOG2991 Splicing regulator [RN 85.1 54 0.0012 34.5 25.7 186 361-558 108-306 (330)
258 COG5185 HEC1 Protein involved 84.2 81 0.0018 35.8 35.7 31 496-526 552-582 (622)
259 PF14915 CCDC144C: CCDC144C pr 84.1 64 0.0014 34.5 38.1 99 422-524 159-257 (305)
260 KOG4302 Microtubule-associated 83.8 1E+02 0.0022 36.6 21.7 102 488-593 160-264 (660)
261 TIGR00618 sbcc exonuclease Sbc 83.8 1.2E+02 0.0027 37.6 41.7 23 245-267 184-206 (1042)
262 PF03148 Tektin: Tektin family 83.6 76 0.0016 35.0 29.6 23 245-267 43-65 (384)
263 PF04582 Reo_sigmaC: Reovirus 83.5 2.2 4.9E-05 45.8 6.0 88 430-521 65-152 (326)
264 PF11932 DUF3450: Protein of u 82.9 60 0.0013 33.4 16.1 58 447-508 40-97 (251)
265 PRK10884 SH3 domain-containing 82.8 14 0.0003 37.4 11.1 19 348-366 94-112 (206)
266 PLN02939 transferase, transfer 82.5 1.4E+02 0.003 37.1 32.3 37 230-266 166-212 (977)
267 PF07106 TBPIP: Tat binding pr 82.4 22 0.00048 34.3 12.0 64 423-488 74-137 (169)
268 KOG0804 Cytoplasmic Zn-finger 82.4 35 0.00076 38.3 14.6 25 433-457 426-450 (493)
269 PF10267 Tmemb_cc2: Predicted 82.1 45 0.00098 37.1 15.5 48 362-412 245-292 (395)
270 KOG1937 Uncharacterized conser 82.0 96 0.0021 35.1 27.0 64 509-590 389-456 (521)
271 KOG4603 TBP-1 interacting prot 82.0 57 0.0012 32.4 14.2 68 421-490 79-146 (201)
272 PF05276 SH3BP5: SH3 domain-bi 81.7 70 0.0015 33.2 28.8 86 325-414 14-109 (239)
273 PRK09841 cryptic autophosphory 81.4 35 0.00075 40.6 15.5 60 532-592 334-393 (726)
274 PF04912 Dynamitin: Dynamitin 81.1 92 0.002 34.2 29.0 27 186-212 87-113 (388)
275 PF12329 TMF_DNA_bd: TATA elem 80.9 20 0.00044 30.4 9.7 54 477-530 8-61 (74)
276 KOG2196 Nuclear porin [Nuclear 80.8 62 0.0013 33.7 14.8 13 384-396 80-92 (254)
277 PF15450 DUF4631: Domain of un 80.8 1.1E+02 0.0024 35.1 34.5 56 288-343 18-73 (531)
278 COG3096 MukB Uncharacterized p 80.6 1.4E+02 0.003 36.0 27.3 70 294-364 840-910 (1480)
279 PF00769 ERM: Ezrin/radixin/mo 80.4 77 0.0017 32.9 16.8 36 522-557 74-109 (246)
280 COG1382 GimC Prefoldin, chaper 80.0 52 0.0011 30.7 13.1 28 499-526 74-101 (119)
281 PF09738 DUF2051: Double stran 79.3 37 0.0008 36.4 13.3 38 397-438 78-115 (302)
282 PF10234 Cluap1: Clusterin-ass 79.1 71 0.0015 33.7 15.0 68 432-503 166-233 (267)
283 PF05278 PEARLI-4: Arabidopsis 78.8 67 0.0014 34.0 14.6 56 475-530 194-249 (269)
284 PF07889 DUF1664: Protein of u 78.8 43 0.00093 31.5 12.0 39 512-550 85-123 (126)
285 PRK03947 prefoldin subunit alp 78.5 58 0.0013 30.4 13.1 7 432-438 17-23 (140)
286 PF07889 DUF1664: Protein of u 78.3 61 0.0013 30.5 12.9 58 352-409 66-123 (126)
287 PF14197 Cep57_CLD_2: Centroso 78.2 20 0.00044 30.1 8.8 60 330-390 3-62 (69)
288 PRK09343 prefoldin subunit bet 78.0 52 0.0011 30.4 12.3 32 427-458 70-101 (121)
289 COG3206 GumC Uncharacterized p 77.1 1.3E+02 0.0028 33.7 19.9 26 493-518 371-396 (458)
290 PF07798 DUF1640: Protein of u 76.9 78 0.0017 31.0 16.2 8 451-458 140-147 (177)
291 KOG4657 Uncharacterized conser 76.6 95 0.0021 32.1 14.5 87 325-412 44-130 (246)
292 PLN02939 transferase, transfer 76.4 2.1E+02 0.0045 35.6 29.6 26 428-453 257-282 (977)
293 TIGR02977 phageshock_pspA phag 76.3 92 0.002 31.5 21.9 25 377-401 47-71 (219)
294 KOG0288 WD40 repeat protein Ti 75.6 80 0.0017 35.3 14.6 29 430-458 43-71 (459)
295 KOG4807 F-actin binding protei 75.5 1.4E+02 0.003 33.3 25.0 121 363-483 444-581 (593)
296 TIGR02338 gimC_beta prefoldin, 75.3 63 0.0014 29.1 12.5 34 425-458 7-40 (110)
297 PF06705 SF-assemblin: SF-asse 74.8 1.1E+02 0.0023 31.5 33.2 24 502-525 168-191 (247)
298 PF05278 PEARLI-4: Arabidopsis 74.8 1.2E+02 0.0026 32.1 15.5 9 398-406 151-159 (269)
299 KOG0244 Kinesin-like protein [ 74.6 2.2E+02 0.0047 35.0 22.4 142 428-574 467-612 (913)
300 KOG0288 WD40 repeat protein Ti 74.1 1.1E+02 0.0025 34.1 15.3 59 469-527 15-73 (459)
301 KOG1850 Myosin-like coiled-coi 74.1 1.4E+02 0.003 32.5 39.2 69 348-417 110-178 (391)
302 PF02994 Transposase_22: L1 tr 73.5 10 0.00022 41.6 7.4 15 581-595 295-309 (370)
303 PF01920 Prefoldin_2: Prefoldi 73.2 62 0.0013 28.1 11.1 8 431-438 8-15 (106)
304 TIGR00618 sbcc exonuclease Sbc 73.1 2.5E+02 0.0054 35.0 35.3 8 573-580 505-512 (1042)
305 COG4717 Uncharacterized conser 72.5 2.4E+02 0.0052 34.6 34.2 15 59-73 426-440 (984)
306 PRK09841 cryptic autophosphory 72.4 92 0.002 37.1 15.6 29 513-541 367-395 (726)
307 KOG2196 Nuclear porin [Nuclear 72.3 1.3E+02 0.0028 31.4 19.9 14 329-342 75-88 (254)
308 PF15290 Syntaphilin: Golgi-lo 71.8 1.1E+02 0.0024 32.6 13.9 45 429-473 69-114 (305)
309 PRK13169 DNA replication intia 71.6 28 0.00061 32.0 8.6 46 510-555 9-54 (110)
310 PF06005 DUF904: Protein of un 71.4 61 0.0013 27.5 10.0 51 316-367 9-59 (72)
311 KOG0992 Uncharacterized conser 71.3 2E+02 0.0043 33.1 38.3 44 544-587 377-421 (613)
312 PRK10698 phage shock protein P 71.1 1.3E+02 0.0027 30.8 22.2 39 371-409 34-72 (222)
313 PF06785 UPF0242: Uncharacteri 71.1 1.6E+02 0.0036 32.1 17.4 15 444-458 203-217 (401)
314 KOG4302 Microtubule-associated 71.0 2.3E+02 0.005 33.7 23.7 33 348-380 161-193 (660)
315 PRK11519 tyrosine kinase; Prov 70.5 1.9E+02 0.004 34.6 17.6 24 346-369 273-296 (719)
316 PF03962 Mnd1: Mnd1 family; I 70.0 1.2E+02 0.0025 30.3 13.4 34 422-455 63-96 (188)
317 COG0497 RecN ATPase involved i 69.5 2.3E+02 0.0049 33.1 23.9 28 516-543 342-369 (557)
318 PF04102 SlyX: SlyX; InterPro 69.2 24 0.00053 29.4 7.2 46 396-445 4-49 (69)
319 KOG3478 Prefoldin subunit 6, K 69.0 97 0.0021 28.6 13.7 49 424-476 65-113 (120)
320 PF03962 Mnd1: Mnd1 family; I 68.9 1.1E+02 0.0024 30.5 13.0 27 464-490 73-99 (188)
321 PF06785 UPF0242: Uncharacteri 68.6 1.9E+02 0.004 31.7 21.1 41 418-458 103-143 (401)
322 PRK15422 septal ring assembly 68.5 65 0.0014 28.0 9.6 23 317-339 10-32 (79)
323 TIGR02231 conserved hypothetic 67.4 67 0.0015 36.6 12.6 37 507-543 129-165 (525)
324 PF07200 Mod_r: Modifier of ru 67.3 1.1E+02 0.0024 28.7 13.3 89 492-592 52-140 (150)
325 PF12329 TMF_DNA_bd: TATA elem 67.2 60 0.0013 27.5 9.2 15 468-482 34-48 (74)
326 PF04871 Uso1_p115_C: Uso1 / p 67.2 1.2E+02 0.0025 28.8 14.9 30 520-549 81-110 (136)
327 PF04012 PspA_IM30: PspA/IM30 67.1 1.4E+02 0.0031 29.8 26.4 15 387-401 56-70 (221)
328 COG3074 Uncharacterized protei 67.1 79 0.0017 26.9 10.4 28 313-340 6-33 (79)
329 PF02050 FliJ: Flagellar FliJ 66.9 85 0.0018 27.2 14.6 44 503-546 46-89 (123)
330 KOG4603 TBP-1 interacting prot 66.8 69 0.0015 31.8 10.6 33 532-564 118-150 (201)
331 PF15290 Syntaphilin: Golgi-lo 66.2 1.7E+02 0.0037 31.2 14.0 22 391-412 63-84 (305)
332 PF06156 DUF972: Protein of un 65.6 39 0.00085 30.8 8.3 47 510-556 9-55 (107)
333 KOG3091 Nuclear pore complex, 65.4 1.7E+02 0.0036 33.5 14.6 66 308-374 338-403 (508)
334 PF14712 Snapin_Pallidin: Snap 65.0 72 0.0016 27.5 9.6 30 425-454 61-90 (92)
335 PRK15422 septal ring assembly 64.9 95 0.0021 27.0 10.1 22 490-511 48-69 (79)
336 PF02403 Seryl_tRNA_N: Seryl-t 64.6 68 0.0015 28.4 9.7 29 378-406 70-98 (108)
337 PF13805 Pil1: Eisosome compon 64.6 1.2E+02 0.0027 32.1 12.8 57 480-536 102-158 (271)
338 PRK11519 tyrosine kinase; Prov 64.1 2.2E+02 0.0047 34.0 16.4 9 518-526 372-380 (719)
339 PRK10698 phage shock protein P 64.0 1.8E+02 0.0038 29.8 25.0 25 377-401 47-71 (222)
340 PF05266 DUF724: Protein of un 63.6 1.7E+02 0.0036 29.4 16.9 15 395-409 68-82 (190)
341 KOG0240 Kinesin (SMY1 subfamil 63.5 3E+02 0.0064 32.2 21.7 28 493-520 515-542 (607)
342 KOG2264 Exostosin EXT1L [Signa 63.4 46 0.00099 38.5 9.9 56 348-403 94-149 (907)
343 PF10211 Ax_dynein_light: Axon 62.4 1.7E+02 0.0037 29.1 14.1 31 379-409 124-154 (189)
344 PF10205 KLRAQ: Predicted coil 62.2 80 0.0017 28.7 9.4 56 419-478 17-72 (102)
345 TIGR01010 BexC_CtrB_KpsE polys 62.1 2E+02 0.0044 31.0 14.5 20 349-368 179-198 (362)
346 KOG1850 Myosin-like coiled-coi 62.0 2.4E+02 0.0052 30.7 33.0 17 233-249 75-91 (391)
347 PF12777 MT: Microtubule-bindi 61.8 32 0.00069 37.2 8.3 95 299-401 216-310 (344)
348 PF12777 MT: Microtubule-bindi 61.3 2.4E+02 0.0052 30.5 25.1 84 484-567 210-293 (344)
349 TIGR02231 conserved hypothetic 61.3 86 0.0019 35.8 12.0 31 375-405 138-168 (525)
350 PF07058 Myosin_HC-like: Myosi 61.2 2.4E+02 0.0053 30.5 17.4 61 381-441 20-86 (351)
351 PF10046 BLOC1_2: Biogenesis o 61.0 1.2E+02 0.0026 26.9 12.4 37 483-519 61-97 (99)
352 PF15233 SYCE1: Synaptonemal c 60.5 1.6E+02 0.0034 28.0 11.8 11 485-495 38-48 (134)
353 PF07989 Microtub_assoc: Micro 60.2 77 0.0017 27.1 8.6 30 327-357 2-31 (75)
354 PF07200 Mod_r: Modifier of ru 59.8 1.3E+02 0.0027 28.4 11.1 40 375-414 48-87 (150)
355 PF15294 Leu_zip: Leucine zipp 58.3 2.6E+02 0.0056 29.8 20.3 131 419-553 130-276 (278)
356 COG4717 Uncharacterized conser 58.2 4.4E+02 0.0095 32.5 29.9 36 232-267 611-646 (984)
357 KOG3091 Nuclear pore complex, 58.1 3.4E+02 0.0074 31.2 17.5 20 382-401 376-395 (508)
358 TIGR01010 BexC_CtrB_KpsE polys 58.0 2.7E+02 0.0059 30.0 16.7 31 513-543 275-305 (362)
359 PF14073 Cep57_CLD: Centrosome 58.0 2.1E+02 0.0045 28.6 20.8 37 489-525 121-157 (178)
360 PF15035 Rootletin: Ciliary ro 57.8 2E+02 0.0044 28.5 19.5 20 419-438 100-119 (182)
361 PF06548 Kinesin-related: Kine 57.6 3.3E+02 0.0073 30.9 28.1 133 310-458 290-426 (488)
362 PF10805 DUF2730: Protein of u 57.4 96 0.0021 28.0 9.3 57 349-405 37-95 (106)
363 COG3074 Uncharacterized protei 56.9 1.2E+02 0.0027 25.8 9.5 58 309-367 9-66 (79)
364 PF05335 DUF745: Protein of un 56.4 2.2E+02 0.0048 28.5 16.3 97 316-413 72-168 (188)
365 PRK00295 hypothetical protein; 56.4 65 0.0014 26.9 7.4 13 397-409 6-18 (68)
366 PF12761 End3: Actin cytoskele 56.2 84 0.0018 31.7 9.4 33 496-528 161-193 (195)
367 PF15035 Rootletin: Ciliary ro 56.2 2.2E+02 0.0047 28.4 20.4 25 374-398 15-39 (182)
368 KOG2751 Beclin-like protein [S 56.1 3.5E+02 0.0075 30.6 15.7 50 477-526 207-256 (447)
369 PF06120 Phage_HK97_TLTM: Tail 55.8 2.9E+02 0.0064 29.7 16.9 135 313-450 36-170 (301)
370 PF14992 TMCO5: TMCO5 family 55.1 2.9E+02 0.0063 29.5 16.3 25 315-339 22-46 (280)
371 PF15456 Uds1: Up-regulated Du 54.9 1.2E+02 0.0026 28.4 9.7 37 422-458 75-111 (124)
372 PRK00736 hypothetical protein; 54.2 66 0.0014 26.9 7.1 18 421-438 26-43 (68)
373 PRK12704 phosphodiesterase; Pr 54.1 4E+02 0.0087 30.8 17.9 18 567-584 187-204 (520)
374 PLN03188 kinesin-12 family pro 53.9 5.9E+02 0.013 32.7 28.5 24 435-458 1173-1196(1320)
375 PF08647 BRE1: BRE1 E3 ubiquit 53.9 1.6E+02 0.0034 26.1 13.0 66 468-533 4-69 (96)
376 KOG2180 Late Golgi protein sor 53.8 4.7E+02 0.01 31.5 16.1 86 490-583 81-170 (793)
377 PF10234 Cluap1: Clusterin-ass 53.8 3E+02 0.0064 29.2 17.9 95 419-524 167-261 (267)
378 PRK02119 hypothetical protein; 53.5 70 0.0015 27.2 7.2 9 398-406 11-19 (73)
379 PF05266 DUF724: Protein of un 53.4 2.5E+02 0.0054 28.2 16.8 16 538-553 160-175 (190)
380 PRK00409 recombination and DNA 53.3 2.6E+02 0.0056 34.0 14.6 21 195-215 229-249 (782)
381 KOG4460 Nuclear pore complex, 53.0 4.4E+02 0.0094 30.9 19.5 58 349-406 590-647 (741)
382 PRK04325 hypothetical protein; 52.7 72 0.0016 27.1 7.2 13 397-409 10-22 (74)
383 PRK02793 phi X174 lysis protei 52.6 73 0.0016 26.9 7.2 14 396-409 8-21 (72)
384 PF08581 Tup_N: Tup N-terminal 52.1 1.6E+02 0.0034 25.5 10.3 74 359-432 2-75 (79)
385 COG2882 FliJ Flagellar biosynt 52.1 2.3E+02 0.005 27.4 17.6 106 464-570 20-131 (148)
386 cd07627 BAR_Vps5p The Bin/Amph 51.7 2.7E+02 0.0058 28.0 26.2 16 493-508 113-128 (216)
387 PF12252 SidE: Dot/Icm substra 51.4 6.1E+02 0.013 32.1 30.1 86 294-381 1107-1192(1439)
388 KOG3850 Predicted membrane pro 51.4 3.9E+02 0.0085 29.9 15.7 108 363-477 262-370 (455)
389 PF14992 TMCO5: TMCO5 family 50.8 2E+02 0.0043 30.7 11.5 35 422-456 12-46 (280)
390 KOG0244 Kinesin-like protein [ 50.7 5.7E+02 0.012 31.6 23.3 13 255-267 330-342 (913)
391 KOG1103 Predicted coiled-coil 50.4 3.9E+02 0.0084 29.5 24.4 38 375-412 146-183 (561)
392 PF04871 Uso1_p115_C: Uso1 / p 49.8 2.3E+02 0.005 26.8 13.9 59 506-564 59-118 (136)
393 PF08826 DMPK_coil: DMPK coile 49.7 1.5E+02 0.0032 24.5 9.2 61 336-397 1-61 (61)
394 COG3206 GumC Uncharacterized p 49.5 4.2E+02 0.009 29.6 26.4 113 346-458 201-322 (458)
395 PF03915 AIP3: Actin interacti 49.5 4.3E+02 0.0094 29.8 17.7 63 379-447 210-272 (424)
396 PF15254 CCDC14: Coiled-coil d 49.4 5.7E+02 0.012 31.1 27.0 26 369-394 388-413 (861)
397 PF04899 MbeD_MobD: MbeD/MobD 49.3 1.6E+02 0.0036 24.9 9.7 44 358-401 25-68 (70)
398 COG5570 Uncharacterized small 49.3 76 0.0016 25.6 6.2 46 514-559 3-55 (57)
399 KOG2010 Double stranded RNA bi 49.3 1.8E+02 0.0039 31.7 10.9 62 492-553 137-198 (405)
400 TIGR03752 conj_TIGR03752 integ 49.2 1.9E+02 0.004 33.1 11.7 32 313-344 61-92 (472)
401 PF15294 Leu_zip: Leucine zipp 49.0 3.6E+02 0.0078 28.8 26.3 16 546-561 255-270 (278)
402 TIGR01069 mutS2 MutS2 family p 48.9 3.2E+02 0.007 33.1 14.5 17 27-43 39-55 (771)
403 COG5283 Phage-related tail pro 47.2 7.2E+02 0.016 31.7 25.8 27 564-590 277-303 (1213)
404 COG3352 FlaC Putative archaeal 47.2 67 0.0015 31.2 6.8 46 346-391 85-131 (157)
405 KOG2077 JNK/SAPK-associated pr 47.1 4.6E+02 0.0099 30.9 14.2 27 419-445 397-423 (832)
406 COG3352 FlaC Putative archaeal 46.9 1.8E+02 0.0039 28.4 9.6 59 499-557 69-128 (157)
407 KOG4572 Predicted DNA-binding 46.7 6.4E+02 0.014 31.0 33.6 74 520-593 1136-1228(1424)
408 PF05529 Bap31: B-cell recepto 46.4 1.4E+02 0.0031 29.3 9.4 11 468-478 162-172 (192)
409 PRK00846 hypothetical protein; 46.3 1.1E+02 0.0024 26.5 7.3 12 396-407 13-24 (77)
410 PF05546 She9_MDM33: She9 / Md 46.2 3.3E+02 0.0072 27.8 11.9 18 503-520 174-191 (207)
411 PF04108 APG17: Autophagy prot 45.6 4.7E+02 0.01 29.1 39.6 60 526-589 293-352 (412)
412 PF01486 K-box: K-box region; 45.4 2.1E+02 0.0046 25.1 9.8 44 396-439 49-93 (100)
413 PF06810 Phage_GP20: Phage min 44.8 1.7E+02 0.0037 28.3 9.4 29 375-403 20-48 (155)
414 PF03915 AIP3: Actin interacti 44.6 5.1E+02 0.011 29.3 18.1 18 515-532 298-315 (424)
415 TIGR03752 conj_TIGR03752 integ 43.9 2.4E+02 0.0052 32.2 11.5 17 385-401 119-135 (472)
416 PF03999 MAP65_ASE1: Microtubu 43.8 7.7 0.00017 45.3 0.0 37 422-458 143-179 (619)
417 PF11180 DUF2968: Protein of u 43.7 3.6E+02 0.0078 27.3 14.5 75 330-405 110-184 (192)
418 cd00890 Prefoldin Prefoldin is 43.3 2.5E+02 0.0054 25.2 10.3 23 504-526 96-118 (129)
419 cd07664 BAR_SNX2 The Bin/Amphi 43.1 4E+02 0.0086 27.5 21.0 168 288-456 20-228 (234)
420 PF07851 TMPIT: TMPIT-like pro 42.5 3E+02 0.0065 30.1 11.7 27 492-518 65-91 (330)
421 PF07989 Microtub_assoc: Micro 42.2 2.2E+02 0.0047 24.3 8.6 13 465-477 19-31 (75)
422 PF04065 Not3: Not1 N-terminal 41.7 4.2E+02 0.0092 27.5 17.2 59 535-593 127-187 (233)
423 PF05008 V-SNARE: Vesicle tran 41.7 1.9E+02 0.0042 24.0 8.3 54 495-554 25-78 (79)
424 PF05700 BCAS2: Breast carcino 41.6 3.9E+02 0.0085 27.1 15.5 107 356-462 99-216 (221)
425 PF11570 E2R135: Coiled-coil r 41.4 3.2E+02 0.007 26.0 12.2 29 315-343 5-33 (136)
426 PF01496 V_ATPase_I: V-type AT 41.3 90 0.002 37.4 8.4 79 512-590 204-282 (759)
427 PF04912 Dynamitin: Dynamitin 41.3 5.2E+02 0.011 28.4 20.8 17 189-205 97-113 (388)
428 smart00502 BBC B-Box C-termina 41.0 2.5E+02 0.0053 24.6 15.0 100 307-406 3-103 (127)
429 PF05529 Bap31: B-cell recepto 41.0 2E+02 0.0044 28.2 9.5 31 379-409 158-188 (192)
430 PF15456 Uds1: Up-regulated Du 40.9 3.1E+02 0.0067 25.7 11.7 26 427-452 21-46 (124)
431 KOG4438 Centromere-associated 40.7 5.9E+02 0.013 28.8 35.6 18 253-270 150-167 (446)
432 PF03999 MAP65_ASE1: Microtubu 40.6 1.3E+02 0.0028 35.2 9.4 32 464-495 327-358 (619)
433 PF08055 Trp_leader1: Tryptoph 40.4 10 0.00022 23.5 0.1 9 15-23 7-15 (18)
434 PF15188 CCDC-167: Coiled-coil 40.4 1E+02 0.0022 27.2 6.3 26 499-524 40-65 (85)
435 PF10205 KLRAQ: Predicted coil 40.3 1.4E+02 0.003 27.2 7.4 47 310-364 25-71 (102)
436 cd00176 SPEC Spectrin repeats, 40.2 3.2E+02 0.0069 25.6 18.3 172 382-560 33-209 (213)
437 KOG4571 Activating transcripti 40.1 73 0.0016 34.0 6.4 41 523-563 248-288 (294)
438 KOG0998 Synaptic vesicle prote 40.0 64 0.0014 39.4 6.9 19 390-408 450-468 (847)
439 KOG4687 Uncharacterized coiled 39.9 5E+02 0.011 27.8 21.6 59 529-601 159-217 (389)
440 KOG0972 Huntingtin interacting 39.7 5.2E+02 0.011 28.0 14.5 116 396-518 230-358 (384)
441 PF07798 DUF1640: Protein of u 39.2 3.8E+02 0.0082 26.2 20.3 13 467-479 138-150 (177)
442 PF07851 TMPIT: TMPIT-like pro 39.1 3.4E+02 0.0074 29.6 11.4 24 364-387 35-58 (330)
443 PF08172 CASP_C: CASP C termin 38.5 1.6E+02 0.0035 30.7 8.7 22 422-443 115-136 (248)
444 PF14712 Snapin_Pallidin: Snap 38.4 2.6E+02 0.0056 24.0 11.6 23 533-555 67-89 (92)
445 KOG4460 Nuclear pore complex, 38.1 7.3E+02 0.016 29.2 21.5 26 490-515 711-736 (741)
446 PF04949 Transcrip_act: Transc 38.1 3.9E+02 0.0085 26.0 17.2 60 471-530 81-140 (159)
447 TIGR02449 conserved hypothetic 37.8 2.4E+02 0.0053 23.6 8.4 47 469-515 16-62 (65)
448 PF06248 Zw10: Centromere/kine 37.0 7.2E+02 0.016 28.8 18.2 38 420-458 75-112 (593)
449 PF13094 CENP-Q: CENP-Q, a CEN 36.8 3.8E+02 0.0083 25.5 12.4 34 425-458 24-57 (160)
450 PF04859 DUF641: Plant protein 36.6 3.8E+02 0.0082 25.5 10.5 20 393-412 16-35 (131)
451 PRK14148 heat shock protein Gr 36.4 3.1E+02 0.0067 27.7 10.0 11 585-595 127-137 (195)
452 PRK10803 tol-pal system protei 36.1 2.3E+02 0.0049 29.6 9.4 37 493-529 59-95 (263)
453 PTZ00464 SNF-7-like protein; P 35.6 5E+02 0.011 26.5 18.4 16 430-445 70-85 (211)
454 PF14988 DUF4515: Domain of un 35.5 4.9E+02 0.011 26.4 27.9 193 306-525 6-200 (206)
455 PRK00409 recombination and DNA 35.5 8.9E+02 0.019 29.5 16.6 116 402-520 501-625 (782)
456 PF03148 Tektin: Tektin family 35.5 6.4E+02 0.014 27.8 32.7 250 245-540 43-369 (384)
457 PRK10803 tol-pal system protei 35.5 2.3E+02 0.0049 29.6 9.3 64 330-394 38-101 (263)
458 PF13094 CENP-Q: CENP-Q, a CEN 35.2 3E+02 0.0065 26.3 9.5 68 468-535 21-88 (160)
459 TIGR00414 serS seryl-tRNA synt 35.0 2.4E+02 0.0052 31.5 9.9 68 333-401 31-102 (418)
460 PF06476 DUF1090: Protein of u 34.9 3.7E+02 0.008 24.8 10.3 85 346-439 23-114 (115)
461 PRK13729 conjugal transfer pil 34.5 1.3E+02 0.0028 34.3 7.7 61 358-418 66-126 (475)
462 COG5283 Phage-related tail pro 34.1 1.1E+03 0.024 30.1 22.6 178 388-587 21-205 (1213)
463 cd00584 Prefoldin_alpha Prefol 34.0 3.7E+02 0.0079 24.5 12.3 83 431-521 2-127 (129)
464 PF12761 End3: Actin cytoskele 33.9 3.9E+02 0.0083 27.1 10.1 92 312-403 97-195 (195)
465 KOG2685 Cystoskeletal protein 33.9 7.3E+02 0.016 28.0 27.3 264 288-560 82-388 (421)
466 PF05377 FlaC_arch: Flagella a 33.9 1.5E+02 0.0033 24.1 5.9 40 348-387 1-40 (55)
467 cd00584 Prefoldin_alpha Prefol 33.8 3.7E+02 0.008 24.5 12.9 88 444-535 1-127 (129)
468 PRK14143 heat shock protein Gr 33.8 4.4E+02 0.0095 27.4 10.9 81 515-595 66-165 (238)
469 PRK13182 racA polar chromosome 33.7 2.6E+02 0.0056 27.7 8.9 64 380-456 83-146 (175)
470 PF01442 Apolipoprotein: Apoli 33.4 4.1E+02 0.0088 24.9 24.2 168 394-573 3-173 (202)
471 PF08172 CASP_C: CASP C termin 33.4 5.6E+02 0.012 26.8 11.7 81 444-528 1-126 (248)
472 PF05335 DUF745: Protein of un 33.3 5.1E+02 0.011 26.0 16.4 103 451-557 69-171 (188)
473 KOG0998 Synaptic vesicle prote 33.3 95 0.0021 37.9 6.9 141 375-530 435-575 (847)
474 PRK15178 Vi polysaccharide exp 33.2 7.7E+02 0.017 28.0 19.4 154 317-476 215-386 (434)
475 KOG2629 Peroxisomal membrane a 33.2 3.6E+02 0.0079 28.9 10.2 78 425-509 119-196 (300)
476 TIGR03319 YmdA_YtgF conserved 33.1 8.1E+02 0.018 28.3 18.5 124 440-566 23-147 (514)
477 PF08930 DUF1912: Domain of un 33.1 2E+02 0.0044 24.9 6.8 54 30-83 14-67 (84)
478 PF08826 DMPK_coil: DMPK coile 33.0 2.8E+02 0.0061 22.9 9.5 59 478-536 1-59 (61)
479 PF13863 DUF4200: Domain of un 32.8 3.7E+02 0.0081 24.2 16.1 108 422-529 1-108 (126)
480 PF14389 Lzipper-MIP1: Leucine 32.4 2E+02 0.0043 25.2 7.0 80 374-453 7-86 (88)
481 TIGR02894 DNA_bind_RsfA transc 31.7 5E+02 0.011 25.6 10.2 75 432-511 81-155 (161)
482 PLN02678 seryl-tRNA synthetase 31.5 2.7E+02 0.0059 31.6 9.7 78 426-504 31-108 (448)
483 PRK05431 seryl-tRNA synthetase 31.5 2.4E+02 0.0053 31.5 9.3 72 428-500 28-99 (425)
484 PLN02678 seryl-tRNA synthetase 31.5 3.1E+02 0.0067 31.1 10.1 72 421-493 33-104 (448)
485 TIGR01069 mutS2 MutS2 family p 31.1 1E+03 0.022 28.9 15.6 112 402-516 496-607 (771)
486 TIGR03545 conserved hypothetic 31.0 9.2E+02 0.02 28.2 16.0 141 447-594 162-310 (555)
487 PF06120 Phage_HK97_TLTM: Tail 30.9 7.1E+02 0.015 26.9 20.1 163 387-549 39-202 (301)
488 PF04880 NUDE_C: NUDE protein, 30.9 82 0.0018 31.0 4.8 59 348-411 1-59 (166)
489 PF02388 FemAB: FemAB family; 30.9 1.7E+02 0.0038 32.3 8.0 60 349-412 244-303 (406)
490 PRK14154 heat shock protein Gr 30.8 4.6E+02 0.01 26.8 10.3 78 518-595 54-150 (208)
491 KOG3990 Uncharacterized conser 30.7 2.5E+02 0.0055 29.6 8.4 69 467-543 225-294 (305)
492 PF10458 Val_tRNA-synt_C: Valy 30.7 1.7E+02 0.0037 24.0 6.0 59 329-388 1-66 (66)
493 PF07544 Med9: RNA polymerase 30.6 1.6E+02 0.0036 25.3 6.1 55 511-565 23-80 (83)
494 PF06428 Sec2p: GDP/GTP exchan 30.4 1.1E+02 0.0024 27.6 5.2 78 325-403 1-79 (100)
495 PF15358 TSKS: Testis-specific 30.4 3.3E+02 0.0071 30.7 9.6 98 472-570 123-232 (558)
496 PRK05431 seryl-tRNA synthetase 29.9 3.4E+02 0.0073 30.4 10.1 72 421-493 28-99 (425)
497 PF08581 Tup_N: Tup N-terminal 29.7 3.7E+02 0.0081 23.3 11.6 71 464-534 1-71 (79)
498 PF03961 DUF342: Protein of un 29.6 3.1E+02 0.0068 30.7 9.8 76 379-454 331-408 (451)
499 PF04880 NUDE_C: NUDE protein, 29.4 79 0.0017 31.1 4.4 49 363-412 2-53 (166)
500 PF13874 Nup54: Nucleoporin co 29.4 3.5E+02 0.0076 25.5 8.7 103 342-445 33-141 (141)
No 1
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=100.00 E-value=1.3e-41 Score=281.00 Aligned_cols=74 Identities=85% Similarity=1.419 Sum_probs=73.5
Q ss_pred ccccccCCCCCCchhHHHhHHHHHHHHHHHHHHHhhhcchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhh
Q 046695 16 SWWWDSHISPKNSKWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYD 89 (604)
Q Consensus 16 ~~~~~sh~~~~~~~wl~~~l~~~~~~~~~~l~~i~~d~ds~a~~ae~y~~~rp~l~~~v~~~~~~y~~laeryd 89 (604)
||||+|||+|++||||++||+|||+|||.||++|++||||||+||||||+|||+||++|+||||+||+||||||
T Consensus 1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=99.35 E-value=6e-08 Score=114.81 Aligned_cols=125 Identities=21% Similarity=0.251 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695 471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQME-----KHLQQLHMEHTELIKGAEDAHRMVGELRLK 545 (604)
Q Consensus 471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE-----~~L~qLr~E~e~le~~l~elk~kl~ELK~r 545 (604)
.+..++..+...+..+...+..++.....+..++..++..|.+++ ..+..+..++..+...+..+...+.+++..
T Consensus 596 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~ 675 (880)
T PRK02224 596 TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE 675 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333343444444444445555555555542 234444455555555555555555555555
Q ss_pred HHHHHHHHHHHHHhhh--hhhhhHHHHHHHHhhhHHHHHhhHHHHHHHHhcC
Q 046695 546 AKELEEEIEKQRVVIL--EGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGH 595 (604)
Q Consensus 546 v~eLeEeve~qk~~i~--~~aEeKreAIrQlcfslehyR~~y~~L~~~~~gh 595 (604)
+..+..++......+. +...++.+++...=.-|++.+.-+..|+.++.+|
T Consensus 676 ~~~l~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~ 727 (880)
T PRK02224 676 RDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAEELESMYGDL 727 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544333332 2333334444444444555444444444444443
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.31 E-value=1.5e-08 Score=121.73 Aligned_cols=133 Identities=30% Similarity=0.426 Sum_probs=82.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
+..++..+..++..+...+..+..++..+..++..+..++ . .+..++..+...+......+..+..+...+...+.
T Consensus 808 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l---~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 883 (1179)
T TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI---E-ELSEDIESLAAEIEELEELIEELESELEALLNERA 883 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555 2 34445555666666666666666666666666666
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEK 555 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~ 555 (604)
.+..++......+.+++..+..++.+...+...+..+...+..++.++..+.+++..
T Consensus 884 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777776666666666666777777777666666666544
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.28 E-value=5.3e-08 Score=117.39 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=19.7
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695 231 ALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 231 ~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~ 267 (604)
.+..++......|..++.++...+..+..|+.+++.+
T Consensus 167 ~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l 203 (1164)
T TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERL 203 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555554
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.24 E-value=2.6e-07 Score=109.42 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=20.0
Q ss_pred HHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695 234 ARIVGYEKKLRLANEKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 234 ~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~ 267 (604)
.++..+.+++..++.+++..+.++..+..+++.+
T Consensus 363 ~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555556666666666666666666655
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.24 E-value=8.7e-08 Score=115.51 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=5.9
Q ss_pred hhHHHHHHHHhc
Q 046695 583 SGYISLRKAVIG 594 (604)
Q Consensus 583 ~~y~~L~~~~~g 594 (604)
.+|..--.+..|
T Consensus 535 ~~y~~Aie~~lg 546 (1164)
T TIGR02169 535 ERYATAIEVAAG 546 (1164)
T ss_pred HHHHHHHHHHhh
Confidence 455544445555
No 7
>PRK03918 chromosome segregation protein; Provisional
Probab=99.21 E-value=4.6e-07 Score=107.18 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=7.2
Q ss_pred HHHHHHHHhhhHHHHHh
Q 046695 567 KREAIRQLCFSLEHYRS 583 (604)
Q Consensus 567 KreAIrQlcfslehyR~ 583 (604)
+.++|+...=.+..+|.
T Consensus 712 ~~~~l~~~~~~l~~lr~ 728 (880)
T PRK03918 712 ELEKLEKALERVEELRE 728 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444433333444444
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.21 E-value=6.4e-08 Score=116.27 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
+...+..+...+..+..++..+..++..+..++..+..++ . .+...+..+...+..+...+..+..+...+...+.
T Consensus 815 ~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~---~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 890 (1179)
T TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI---E-SLAAEIEELEELIEELESELEALLNERASLEEALA 890 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666666666666655554 2 23334444444444444444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKE 548 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~e 548 (604)
.+...+......+..++..+..+..++..+...+..+...+..+..++.+
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444433
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=99.15 E-value=3.6e-06 Score=99.69 Aligned_cols=94 Identities=24% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHH
Q 046695 500 LESDVISRDDRMDQMEKHLQQLH-----MEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAE--EKREAIR 572 (604)
Q Consensus 500 Leqe~~s~r~~I~emE~~L~qLr-----~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aE--eKreAIr 572 (604)
+...+......|..++..+..+. ..+..+...+..+...+.++...+..+...++..+..|..... ++.+...
T Consensus 631 ~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~ 710 (880)
T PRK03918 631 AFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK 710 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444443 3334444444444444444444444444444444444433311 1222222
Q ss_pred HHhhhHHHHHhhHHHHHHHHh
Q 046695 573 QLCFSLEHYRSGYISLRKAVI 593 (604)
Q Consensus 573 QlcfslehyR~~y~~L~~~~~ 593 (604)
.-.-.+..+..+++.++.+|.
T Consensus 711 ~~~~~l~~~~~~l~~lr~~~~ 731 (880)
T PRK03918 711 KELEKLEKALERVEELREKVK 731 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 223333444444555555443
No 10
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.10 E-value=8.6e-07 Score=108.39 Aligned_cols=61 Identities=30% Similarity=0.336 Sum_probs=50.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhH-HHHHhhHHHH
Q 046695 528 LIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSL-EHYRSGYISL 588 (604)
Q Consensus 528 le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfsl-ehyR~~y~~L 588 (604)
....+.....+...|+.+...+.+..+..+.+|.++-..++++...-|.-+ +|++.-|..|
T Consensus 968 Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 968 AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344777888999999999999999999999999999999999999877654 3455555444
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.07 E-value=3.8e-06 Score=104.92 Aligned_cols=94 Identities=21% Similarity=0.334 Sum_probs=45.3
Q ss_pred hhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 046695 297 EGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKE 376 (604)
Q Consensus 297 ~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~e 376 (604)
..+..+++++...+..+..++.....+.+.|...+.++..++..+... ..-+.+++..+..++.+|.++...++.++..
T Consensus 1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e-~~~~~~l~k~i~eL~~~i~el~e~le~er~~ 1119 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDE-QAEVAQLQKQIKELEARIKELEEELEAERAS 1119 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455555555555555555444 4445555555555555555555555555544
Q ss_pred HHHHHHHHHHHHhhh
Q 046695 377 VSKLQERIKSLKTSL 391 (604)
Q Consensus 377 i~~LqeeI~eLk~ql 391 (604)
+.++......|...+
T Consensus 1120 r~K~ek~r~dL~~el 1134 (1930)
T KOG0161|consen 1120 RAKAERQRRDLSEEL 1134 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444433333333333
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.05 E-value=5.5e-06 Score=101.48 Aligned_cols=89 Identities=21% Similarity=0.405 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRL 544 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~ 544 (604)
++.+|..+...+......++.+..+...+..++..+..++...+..|..++.++..++..+..+...+..+...+..++.
T Consensus 402 l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555555555555555555555555555555555555555555444444444444444444
Q ss_pred HHHHHHHHH
Q 046695 545 KAKELEEEI 553 (604)
Q Consensus 545 rv~eLeEev 553 (604)
.+..+..++
T Consensus 482 ~l~~~~~~~ 490 (1163)
T COG1196 482 ELSSLEARL 490 (1163)
T ss_pred HHHHHHHHH
Confidence 444444444
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.04 E-value=2.6e-06 Score=106.32 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=41.5
Q ss_pred CCCCCchhHHHhHHHHHHHHHHHHHHHh--------hhcchHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046695 23 ISPKNSKWLAENLEEMDQSVKRMLKLIE--------EDGDSFAKKAEMY---YQKRPELISHVEEFYRMYRSLAERYDHV 91 (604)
Q Consensus 23 ~~~~~~~wl~~~l~~~~~~~~~~l~~i~--------~d~ds~a~~ae~y---~~~rp~l~~~v~~~~~~y~~laeryd~~ 91 (604)
.+-.-..||..|..=..+.|-.+|.-.. .|--.++..+-+| ++.++-.+.-|--.|+ +..+.+
T Consensus 577 V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~k------eql~~L 650 (1930)
T KOG0161|consen 577 VDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSFRTVSQLYK------EQLNKL 650 (1930)
T ss_pred eccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcchhhHHHHHH------HHHHHH
Confidence 5556677998887777666666555322 1212223222333 4455544444433333 455778
Q ss_pred hHHHhhhCCcc
Q 046695 92 TGELRKNIPSD 102 (604)
Q Consensus 92 ~~el~~~~~~~ 102 (604)
...|++-.|+-
T Consensus 651 m~~l~~T~phF 661 (1930)
T KOG0161|consen 651 MTTLRSTHPHF 661 (1930)
T ss_pred HHHhccCCCce
Confidence 88888888863
No 14
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.02 E-value=1.2e-05 Score=99.25 Aligned_cols=368 Identities=19% Similarity=0.267 Sum_probs=205.1
Q ss_pred HHHHHhhhHHHH----HHHHhhhhhhhhhhhhhhhcccCCCChHHHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhh
Q 046695 191 LQRKVNELETEL----REAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQK 266 (604)
Q Consensus 191 l~~~~~~le~e~----~~~~~k~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~ 266 (604)
+-.++-+|+.++ .+..+.+..+++..-.-+- ..-+++.....+...+.+|.+++..+.+.|..+|.++..
T Consensus 634 ~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~------ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~t 707 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQK------EVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVET 707 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677776 3334444444333211100 112333444444555558888899999999999998887
Q ss_pred hccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 046695 267 YNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRS 346 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~ 346 (604)
|..- .. . |...|......+..+..+|..+...+..++.++..|+.+-.-+ .
T Consensus 708 L~er--~~-------------------~-------l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll-~ 758 (1822)
T KOG4674|consen 708 LEER--NK-------------------N-------LQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLL-K 758 (1822)
T ss_pred HHHH--HH-------------------H-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-H
Confidence 7311 11 1 2222233334455566666677777777777777777765443 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHH
Q 046695 347 EKIQTLQNQLQLAQKDIATWKSKLNSER---KEVSKLQ-ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAE 422 (604)
Q Consensus 347 ~kieqLq~eLe~~q~eie~i~~kLE~e~---~ei~~Lq-eeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~e 422 (604)
..-..|..+++....+...++.-+.... ....... .+-..+..++..+.+++..|+..+....+.+......++..
T Consensus 759 ~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~ 838 (1822)
T KOG4674|consen 759 ETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQ 838 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4455555555555555554443322222 1111111 22333445555555555555555555555555544445555
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 046695 423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI---------------VGEIEQLKASIAERDKHIENLN 487 (604)
Q Consensus 423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~l---------------e~eIs~lk~el~e~~~~Le~L~ 487 (604)
+...+..+..+...+..|...+..+...|..+..++.++...+ ..+...+-+.++.....+..+.
T Consensus 839 l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~ 918 (1822)
T KOG4674|consen 839 LENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLK 918 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554442222100 1112222222222222333333
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 046695 488 RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEK 567 (604)
Q Consensus 488 ~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeK 567 (604)
.+...-...+..+...+.....-+..|...+.+.+. .+++.+...+.++..++.++..|..++..++...-=...+|
T Consensus 919 ~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~---~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~ 995 (1822)
T KOG4674|consen 919 EELTDALSQIREYQEEYSSLEQSLESVKSELDETRL---ELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGK 995 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 333333445556666666666677777777776663 35566677788888888888888888888887776667777
Q ss_pred HHHHHHHhhhHHHHHhhHHHHHHHHhcCC
Q 046695 568 REAIRQLCFSLEHYRSGYISLRKAVIGHK 596 (604)
Q Consensus 568 reAIrQlcfslehyR~~y~~L~~~~~gh~ 596 (604)
+.+.--+---|.|.|+.|+.++.+...|-
T Consensus 996 e~~~~~~~~e~~sl~ne~~~~~~~~s~~~ 1024 (1822)
T KOG4674|consen 996 EDKLLDLSREISSLQNELKSLLKAASQAN 1024 (1822)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77777777778999999999988887763
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=1e-05 Score=100.20 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL--ESDVISRDDRMDQMEKHLQ 519 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L--eqe~~s~r~~I~emE~~L~ 519 (604)
++.++..+...+..+...|..+...+..+...+..+ ..++......|.+++.++.
T Consensus 989 le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606 989 CEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444 4444444444444444433
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.99 E-value=4.1e-05 Score=89.58 Aligned_cols=83 Identities=18% Similarity=0.392 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRL 544 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~ 544 (604)
+..++..+...+++....|.-.......+..+...+..++..++..+.-.+..++.|+..++.+...+..-...+..++.
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~ 420 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE 420 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444455555555555555555555555555555555555555544444444444444
Q ss_pred HHH
Q 046695 545 KAK 547 (604)
Q Consensus 545 rv~ 547 (604)
++.
T Consensus 421 Rl~ 423 (775)
T PF10174_consen 421 RLS 423 (775)
T ss_pred HHh
Confidence 444
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.93 E-value=1.3e-05 Score=98.91 Aligned_cols=96 Identities=25% Similarity=0.252 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchh---------
Q 046695 238 GYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLD--------- 308 (604)
Q Consensus 238 ~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~e--------- 308 (604)
-+-.+|..+|.++..++.++.+||+|-.-+... .+....+.+.|..|.. .++..+..++.....
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t-~~rL~~e~~~l~~e~~------~L~~~l~~lQt~~~~~e~s~~~~k 800 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKET-EERLSQELEKLSAEQE------SLQLLLDNLQTQKNELEESEMATK 800 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667789999999999999999987776433 3344444555555544 333333333222222
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 309 --LDNKVKALMEELRITKEKLMLSEAEIASLKQE 340 (604)
Q Consensus 309 --l~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~E 340 (604)
+..++..|..+++.++.++..-..++-.+.+.
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~ 834 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNS 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22445555555555555555555555554443
No 18
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=0.00011 Score=87.63 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=8.0
Q ss_pred chhHHHhHHHHHHHHH
Q 046695 28 SKWLAENLEEMDQSVK 43 (604)
Q Consensus 28 ~~wl~~~l~~~~~~~~ 43 (604)
..|+..+..+....+.
T Consensus 103 g~~~~~~~~~~~~~i~ 118 (895)
T PRK01156 103 GSIIAEGFDDTTKYIE 118 (895)
T ss_pred CeeccccHHHHHHHHH
Confidence 3455555555544443
No 19
>PRK01156 chromosome segregation protein; Provisional
Probab=98.89 E-value=4.3e-05 Score=91.14 Aligned_cols=19 Identities=5% Similarity=0.212 Sum_probs=8.0
Q ss_pred HHHHHhhhHHHHHHHHhhh
Q 046695 191 LQRKVNELETELREAKEKL 209 (604)
Q Consensus 191 l~~~~~~le~e~~~~~~k~ 209 (604)
+.+.+..++..+......+
T Consensus 303 ~~~~l~~l~~~l~~l~~~l 321 (895)
T PRK01156 303 YKNDIENKKQILSNIDAEI 321 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.89 E-value=5.4e-05 Score=84.89 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 046695 378 SKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRII 454 (604)
Q Consensus 378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql 454 (604)
..++.++..++.++..+++.+..-++....+...++...+. ..+++++..=..+.|+..+.+....++....+..+-
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qE 358 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQE 358 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666555555555554444 777777777777788777777666665555444443
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 455 KTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE----SDVISRDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 455 ~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le----qe~~s~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
.+.+...-.....+|.+|+.++..+.+.+..=.+++..|..++.... -.+-+.+..|.++...|+-.++|++++..
T Consensus 359 k~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~ 438 (546)
T PF07888_consen 359 KQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQE 438 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33331111023456777777777777777666666666666554321 13334445555555555555555555555
Q ss_pred hHHHHHHHHHHHHHH
Q 046695 531 GAEDAHRMVGELRLK 545 (604)
Q Consensus 531 ~l~elk~kl~ELK~r 545 (604)
.-.++...+-.|+.+
T Consensus 439 EkQeL~~yi~~Le~r 453 (546)
T PF07888_consen 439 EKQELLEYIERLEQR 453 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444443333333333
No 21
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.88 E-value=0.00012 Score=84.80 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=43.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 046695 504 VISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEE 566 (604)
Q Consensus 504 ~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEe 566 (604)
..++|++|..+.-+++.+..++.-.+..+.+...-+-..|-.+..|-..+-.++...+-.+++
T Consensus 492 e~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 492 ELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 345677777777777777777776666666666667777777777777777777666665554
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=1.4e-05 Score=99.11 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=7.7
Q ss_pred HhhhHHHHHHHHhhh
Q 046695 195 VNELETELREAKEKL 209 (604)
Q Consensus 195 ~~~le~e~~~~~~k~ 209 (604)
+.+++.++..+...+
T Consensus 641 L~~~~~~l~~~~~~~ 655 (1311)
T TIGR00606 641 LERLKEEIEKSSKQR 655 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556665555433
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.86 E-value=5.4e-05 Score=88.58 Aligned_cols=356 Identities=19% Similarity=0.242 Sum_probs=159.3
Q ss_pred CCCChHHHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhh---ccCC---hhhhhhhhchHHHHhh
Q 046695 225 KNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQA---DFGS---PAEINVNMWDAELQEG 298 (604)
Q Consensus 225 ~~~~~~~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~---~~~~---~~e~~~~~~~~~Lq~~ 298 (604)
..+++.-|+++...+..++....+.+..++..|.+++++|.....+ .+..+.. ++.. ..+=+ .....
T Consensus 112 ~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~ee-i~kL~e~L~~~g~~~~~~~~~~------~~~~~ 184 (775)
T PF10174_consen 112 AQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEE-IEKLQEMLQSKGLSAEAEEEDN------EALRR 184 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCcccchhhhh------HHHHH
Confidence 3456666777777888888888888888888888888888877444 3333221 1100 00001 11123
Q ss_pred hhccCCcchhhhHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 046695 299 INGLETPSLDLDNKVKALMEELRI--------------------TKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQL 358 (604)
Q Consensus 299 I~eLE~el~el~~kl~~L~eEL~~--------------------~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~ 358 (604)
+.+.+..+..+..-+.....+... +...|..-+..|..+...+..+ ...+..|+.....
T Consensus 185 ~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~l-e~Ei~~L~~~~~~ 263 (775)
T PF10174_consen 185 IREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDL-EDEIYRLRSRGEL 263 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccc
Confidence 333333333333222222222211 1122222223333332222222 2222222222222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHhhhchHHHh---HHHHHHhHHH
Q 046695 359 AQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVS-------DAEQKIFPEKAQ---IKAEILGLYE 428 (604)
Q Consensus 359 ~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~-------d~eekls~eKa~---l~~ei~~LqE 428 (604)
+....+.....++............+..++-++.....++..+.+.+. +..+-|...+.. .......|+.
T Consensus 264 ~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqs 343 (775)
T PF10174_consen 264 SEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQS 343 (775)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221222222222222223334444444444433333333333 333333333332 3334445555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Q 046695 429 EKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRD 508 (604)
Q Consensus 429 k~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r 508 (604)
.+..|+.++......+.-....|..++.++ . .+.++|..+++.++-....|.-|.+..+.+...+..-..++...+
T Consensus 344 dve~Lr~rle~k~~~l~kk~~~~~~~qeE~---~-~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k 419 (775)
T PF10174_consen 344 DVEALRFRLEEKNSQLEKKQAQIEKLQEEK---S-RLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEK 419 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555 3 345555555555555555555555544444433222111111111
Q ss_pred --------------------HHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 046695 509 --------------------DRMDQMEKHLQQLHMEHT----ELIKGAEDAHRMVGELRLKAKELEEEIEKQR------- 557 (604)
Q Consensus 509 --------------------~~I~emE~~L~qLr~E~e----~le~~l~elk~kl~ELK~rv~eLeEeve~qk------- 557 (604)
..+.+.++-+..+...+. .....+...+..+.+++..+..|..++...-
T Consensus 420 ~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~k 499 (775)
T PF10174_consen 420 ERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAK 499 (775)
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 111222222222111111 1112334455555555555555555553322
Q ss_pred ---HhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 046695 558 ---VVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAV 592 (604)
Q Consensus 558 ---~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~~~ 592 (604)
..++.+.+-||.=|.+|-+.||..|+.|..|.--+
T Consensus 500 ee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql 537 (775)
T PF10174_consen 500 EEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQL 537 (775)
T ss_pred hHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 23344556788889999999999999988775544
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.85 E-value=3.8e-06 Score=85.54 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 046695 314 KALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSD 393 (604)
Q Consensus 314 ~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~ 393 (604)
......+..+...|............++.++ ..++..+...+..+..++.....+|.............++.|......
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l-~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~ 89 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASL-QRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQS 89 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333333333334444444444444444444 445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 394 RDHEVRDLKMAVSDAE 409 (604)
Q Consensus 394 leeeI~eLk~~l~d~e 409 (604)
.+.+|..|+..+..+.
T Consensus 90 ~eeri~~lE~~l~ea~ 105 (237)
T PF00261_consen 90 DEERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554444433
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.85 E-value=0.00011 Score=82.61 Aligned_cols=174 Identities=18% Similarity=0.194 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046695 395 DHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQ 471 (604)
Q Consensus 395 eeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~ 471 (604)
..++..|+..+..+.+.+..-... +..++....+.....-.+|+-..-+...|..++.....++.+.......+...
T Consensus 282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~ 361 (546)
T PF07888_consen 282 QQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQA 361 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444444322211 55555555555555555555444444455555555444443333233334444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQME----KHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547 (604)
Q Consensus 472 lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE----~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~ 547 (604)
++..+......|+.|..++..+...++.=..+-..+..+|.... -+|.+.++++.++...+.-+.+.-.+|...-.
T Consensus 362 l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ 441 (546)
T PF07888_consen 362 LQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ 441 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455666666665555544332222222222222211 24666777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhhhhhhhHH
Q 046695 548 ELEEEIEKQRVVILEGAEEKR 568 (604)
Q Consensus 548 eLeEeve~qk~~i~~~aEeKr 568 (604)
+|..-|+++...+=.+|.+|-
T Consensus 442 eL~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 442 ELLEYIERLEQRLDKVADEKW 462 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 777777777777777777764
No 26
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.82 E-value=3.4e-06 Score=85.94 Aligned_cols=145 Identities=17% Similarity=0.269 Sum_probs=99.0
Q ss_pred HHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHH
Q 046695 234 ARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKV 313 (604)
Q Consensus 234 ~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl 313 (604)
.++..+...|..++.++..++.++..|+..+..+ +..+......+
T Consensus 15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~l-----------------------------------E~~le~~eerL 59 (237)
T PF00261_consen 15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLL-----------------------------------EEELERAEERL 59 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HCCCHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHhHHHHH
Confidence 4444555666666666666666666666666555 22333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 046695 314 KALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSD 393 (604)
Q Consensus 314 ~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~ 393 (604)
......|..+......++.....|.+..... ..++..|..++..+....+....++......+.-+...+.....+...
T Consensus 60 ~~~~~kL~~~e~~~de~er~~k~lE~r~~~~-eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~ 138 (237)
T PF00261_consen 60 EEATEKLEEAEKRADESERARKVLENREQSD-EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA 138 (237)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444455555666666666666555 678889999999999888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhch
Q 046695 394 RDHEVRDLKMAVSDAEQKIFP 414 (604)
Q Consensus 394 leeeI~eLk~~l~d~eekls~ 414 (604)
++..|.+|+..+....+++..
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHH
Confidence 888888888888777766643
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.79 E-value=2e-05 Score=82.65 Aligned_cols=58 Identities=17% Similarity=0.370 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLH 522 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr 522 (604)
....+..+..........+..+..+...+...++.|..++.+.+.....+++.|.++.
T Consensus 193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444333
No 28
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.75 E-value=0.00018 Score=84.24 Aligned_cols=241 Identities=14% Similarity=0.108 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHH--HHHHHHhhhchHHHh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT-------SLSDRDHEVRDLKM--AVSDAEQKIFPEKAQ 418 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~-------qlq~leeeI~eLk~--~l~d~eekls~eKa~ 418 (604)
++..|+.+....+..++.+..........-+.|.-...-+.. .-..+..+..+|+. ++...-+..+...+-
T Consensus 309 kl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tl 388 (1195)
T KOG4643|consen 309 KLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTL 388 (1195)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHH
Confidence 344444444444444444443333333333333322222222 33444555566655 444333332221111
Q ss_pred ---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHH------
Q 046695 419 ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE---RIVGEIEQLKASIAERDKHIENL------ 486 (604)
Q Consensus 419 ---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~---~le~eIs~lk~el~e~~~~Le~L------ 486 (604)
....+..+-.+.-.++.+-..+..+++.|+++|.++..++.+++. .+..+..++..++.....-+..-
T Consensus 389 eelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~ 468 (1195)
T KOG4643|consen 389 EELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEE 468 (1195)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Confidence 334555555555556665555666666666666666666654441 23333444444444333332211
Q ss_pred -----------HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 487 -----------NRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEK 555 (604)
Q Consensus 487 -----------~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~ 555 (604)
..+-..+...+..+.+-+..+...+..+......+..++..+.-.+.-...++.+|...+.+++++-.-
T Consensus 469 ~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~ 548 (1195)
T KOG4643|consen 469 LDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAH 548 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 111222222333333334444444445555555566666667767777777888888888888888766
Q ss_pred HHHhhhhhhh--hHHHHHHHHhhhHHHHHhhHHHH
Q 046695 556 QRVVILEGAE--EKREAIRQLCFSLEHYRSGYISL 588 (604)
Q Consensus 556 qk~~i~~~aE--eKreAIrQlcfslehyR~~y~~L 588 (604)
+=..|.-+-. .|++++-|--=.+|-|=.--+.+
T Consensus 549 LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~ 583 (1195)
T KOG4643|consen 549 LLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKY 583 (1195)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666655555 88888887766666554444333
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.74 E-value=0.0006 Score=77.18 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=11.7
Q ss_pred HhhhHHHHHHHHhhhhhhhhh
Q 046695 195 VNELETELREAKEKLHSQEER 215 (604)
Q Consensus 195 ~~~le~e~~~~~~k~~~~~e~ 215 (604)
+.-++.++..+++.|...+-.
T Consensus 36 L~~~qeel~~~k~~l~~~E~~ 56 (522)
T PF05701_consen 36 LEKAQEELAKLKEQLEAAERE 56 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333556666666666555443
No 30
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=8.8e-05 Score=86.44 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 478 ERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQR 557 (604)
Q Consensus 478 e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk 557 (604)
-+..+|..+.++....-+++..|...+.+-+.++.++...+..++.++..+......+...-..|+..+.++++.|+++.
T Consensus 415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~ 494 (1200)
T KOG0964|consen 415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAE 494 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555556666666777777777777777777778888888999999999999998776
Q ss_pred Hhhhhhhh----hHHHHHHHHhhhHHHHH-hhH
Q 046695 558 VVILEGAE----EKREAIRQLCFSLEHYR-SGY 585 (604)
Q Consensus 558 ~~i~~~aE----eKreAIrQlcfslehyR-~~y 585 (604)
..+-.... -=--+||+.| +||| +||
T Consensus 495 ~~L~~~~~r~v~nGi~~v~~I~---e~~k~ngv 524 (1200)
T KOG0964|consen 495 KNLRATMNRSVANGIDSVRKIK---EELKPNGV 524 (1200)
T ss_pred HHHHHhccchhhhhhHHHHHHH---HHhccccc
Confidence 65543332 1123566665 7888 555
No 31
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.68 E-value=0.001 Score=78.16 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGA 532 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l 532 (604)
+..+|.+++.-|.+....+..+.+.++.++..+......|+...+++..++..+.-+..+-..|...+
T Consensus 486 l~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI 553 (1195)
T KOG4643|consen 486 LLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQI 553 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555554444444444333333
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=0.00011 Score=87.13 Aligned_cols=251 Identities=19% Similarity=0.246 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695 312 KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL 391 (604)
Q Consensus 312 kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql 391 (604)
....+.......+.+++..+.+-..++..+..+ ..+++.+..+++.+...+.++..-.+.....+.+++.+|..|...+
T Consensus 378 ~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~-~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~ 456 (1293)
T KOG0996|consen 378 RAKELKNKFESLKKKFQDLEREDVKREEKLKRL-TSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELL 456 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHH
Confidence 333344455556666777888888888888777 7778888888888888888888888888877878877777777777
Q ss_pred hhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046695 392 SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQ 471 (604)
Q Consensus 392 q~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~ 471 (604)
...+.++.+....+....+. +.+++..++.+|.-|..++.....++.-.+.++ . .+...-++
T Consensus 457 ~~~~~~l~e~~~~l~~~t~~--------------~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel---~-~L~~~~~~ 518 (1293)
T KOG0996|consen 457 EKEERELDEILDSLKQETEG--------------IREEIEKLEKELMPLLKQVNEARSELDVAESEL---D-ILLSRHET 518 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHH
Confidence 66666666655555443333 344444455555555555555555555555555 3 34445555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695 472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEE 551 (604)
Q Consensus 472 lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeE 551 (604)
....+.++...|..+..........+..++..+.++..++.+.+..+..++.+...+...++.++.++.+++..++.-..
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s 598 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRS 598 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 66666777777777777777788888888888888888888888888888888888888888888888888876665555
Q ss_pred HHHHHHHhh-----------------hhhhhhH-HHHHHHHhhhHHHH
Q 046695 552 EIEKQRVVI-----------------LEGAEEK-REAIRQLCFSLEHY 581 (604)
Q Consensus 552 eve~qk~~i-----------------~~~aEeK-reAIrQlcfslehy 581 (604)
+-+=+.... +++-..| .=||.=.|=-|+|.
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~Ldyi 646 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYI 646 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceE
Confidence 443222222 1222334 45788777666654
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=0.00044 Score=81.17 Aligned_cols=254 Identities=15% Similarity=0.260 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 046695 311 NKVKALMEELRITKEKLMLSEAEIASLKQEVE---SNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSL 387 (604)
Q Consensus 311 ~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~---sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eL 387 (604)
..++....++......+..+...|..+...+. .-+..+++.++.+|+.+..+.+.-...++.-..+...|+-++..+
T Consensus 748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l 827 (1174)
T KOG0933|consen 748 EEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEEL 827 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555544444331 123345666777776666666666555555555555555555555
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Q 046695 388 KTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG 467 (604)
Q Consensus 388 k~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~ 467 (604)
+..+...+..+..++..++.+...+.. +.+.+......+.....++......++....+|..+-... + .+..
T Consensus 828 ~~e~~~~k~~l~~~~~~~~~l~~e~~~----l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~---e-~~~~ 899 (1174)
T KOG0933|consen 828 EKEISSLKQQLEQLEKQISSLKSELGN----LEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ---E-KCLS 899 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH---H-HHHH
Confidence 544444444444444444433333322 2222222222233333333332222223333332222222 2 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVIS------------------------RDDRMDQMEKHLQQLHM 523 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s------------------------~r~~I~emE~~L~qLr~ 523 (604)
+++....++..+..++.-+..+......++..+.+++.= .++++..|......|++
T Consensus 900 e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k 979 (1174)
T KOG0933|consen 900 EKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEK 979 (1174)
T ss_pred HhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHh
Confidence 444455555555555555555555555555555544432 24444444444444444
Q ss_pred HH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 046695 524 EH-TELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIR 572 (604)
Q Consensus 524 E~-e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIr 572 (604)
-. -....-+...+.+.+.|+.+..-++.--.+.+.+|..+-+.||+++-
T Consensus 980 ~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~ 1029 (1174)
T KOG0933|consen 980 TVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELN 1029 (1174)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 32 12334677888999999999999999999999999999999998753
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.64 E-value=9.6e-05 Score=83.30 Aligned_cols=106 Identities=14% Similarity=0.279 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 046695 427 YEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVIS 506 (604)
Q Consensus 427 qEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s 506 (604)
-.++..|.+.+.+++.++..+...+..++....... .+...+..+...+......|..+..++..++.++..|......
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~-~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~ 376 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN-EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVD 376 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 345555555666666666666666665554443334 5666777777777777777777777788888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046695 507 RDDRMDQMEKHLQQLHMEHTELIKGAE 533 (604)
Q Consensus 507 ~r~~I~emE~~L~qLr~E~e~le~~l~ 533 (604)
....+.++..+|..+..++.++.....
T Consensus 377 ~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 377 NAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776665543
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.62 E-value=0.0008 Score=76.16 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 046695 329 LSEAEIASLKQEV 341 (604)
Q Consensus 329 ~se~eI~~Lk~EL 341 (604)
.+..+|..++..+
T Consensus 176 ~L~~Ei~~lke~l 188 (522)
T PF05701_consen 176 ELSKEIIALKESL 188 (522)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 36
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.61 E-value=0.0013 Score=75.49 Aligned_cols=164 Identities=17% Similarity=0.209 Sum_probs=116.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 046695 381 QERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQ 457 (604)
Q Consensus 381 qeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E 457 (604)
.+.+.-+++-...+++...+|+..-..+++.-++.++- +..+.++..+.+.-+..+|..+.+.-...-..+.+...=
T Consensus 241 ~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatky 320 (1265)
T KOG0976|consen 241 KQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKY 320 (1265)
T ss_pred HhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 45556666666667777777766555555555444433 777777777777777777766555544333344443332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046695 458 KTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHR 537 (604)
Q Consensus 458 ~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~ 537 (604)
+-.+-+++..+|..+..++-+.+...+.+...+..|+.+-+.+..++.++....+..+..+..|.....+.+.+++.++.
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222368889999999999999999999999999999999999999999998888888888888888888887777777
Q ss_pred HHHHHHH
Q 046695 538 MVGELRL 544 (604)
Q Consensus 538 kl~ELK~ 544 (604)
.+-.+..
T Consensus 401 ~if~~e~ 407 (1265)
T KOG0976|consen 401 HIFRLEQ 407 (1265)
T ss_pred hhhhhhh
Confidence 7666553
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.56 E-value=0.00026 Score=74.24 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVI----SRDDRMDQMEKHLQQLHMEHTELIKGA 532 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~----s~r~~I~emE~~L~qLr~E~e~le~~l 532 (604)
.+..++..++..+..+...|..+......|+..+..++..+. .....|..++..|.+++.++.......
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey 285 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREY 285 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 345555555566666666666666666666666655543333 344455555555555555554444433
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.53 E-value=0.00022 Score=84.50 Aligned_cols=175 Identities=17% Similarity=0.234 Sum_probs=83.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDEL-RIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAER 497 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eI-kql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el 497 (604)
+..++..-.+.+..++....+++++|..++.+. ..+..++ . +.+.+++.|+.++..+.. ....|..+.
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~---~-e~e~k~~~L~~evek~e~-------~~~~L~~e~ 424 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSEL---E-ERENKLEQLKKEVEKLEE-------QINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH---H-HHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 334444444444445555554444444444444 2222222 2 333344444444444333 334444444
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh-----------hh
Q 046695 498 DRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDA----HRMVGELRLKAKELEEEIEKQRVVI-----------LE 562 (604)
Q Consensus 498 ~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~el----k~kl~ELK~rv~eLeEeve~qk~~i-----------~~ 562 (604)
+.+..++....+.....+..+.++++.+......+..+ .++++-.--.+.+|-..|++.+..- .-
T Consensus 425 ~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vt 504 (1074)
T KOG0250|consen 425 NEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVT 504 (1074)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeE
Confidence 44444444444444444444444444444444333333 3455555567777777777776651 11
Q ss_pred hhhhHHHHHHHHhhh------HHHHHhhHHHHHHHHhcCC----CcccccCC
Q 046695 563 GAEEKREAIRQLCFS------LEHYRSGYISLRKAVIGHK----GVAVLTSC 604 (604)
Q Consensus 563 ~aEeKreAIrQlcfs------lehyR~~y~~L~~~~~gh~----~~~~~~~~ 604 (604)
+-++|-+-+=+-|+. |=|-+..-.-||.+|.-|+ ||+|..||
T Consensus 505 l~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~ 556 (1074)
T KOG0250|consen 505 LKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSS 556 (1074)
T ss_pred ecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEec
Confidence 234466655566664 1233444556777666443 45555554
No 39
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.51 E-value=0.0001 Score=82.77 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=14.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLREWES 442 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~ 442 (604)
-...+++++..|..+|.|+..
T Consensus 198 lr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 198 LRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHh
Confidence 335677777778888877773
No 40
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=0.00086 Score=79.91 Aligned_cols=240 Identities=15% Similarity=0.220 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695 312 KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL 391 (604)
Q Consensus 312 kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql 391 (604)
++....+++....+.|......+....++....-......+......+.+....+..++.....+-.+.++.++.+...+
T Consensus 335 ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~ 414 (1293)
T KOG0996|consen 335 KIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKI 414 (1293)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433332222102223345666666666777777777777777777778888888777
Q ss_pred hhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHhhhH
Q 046695 392 SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGR-----------SLEDELRIIKTQKTE 460 (604)
Q Consensus 392 q~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~-----------sLe~eIkql~~E~~e 460 (604)
..++.++.+......+++..... .+..+.+.+.++..|...+...++.+. -+.+++..++.++
T Consensus 415 kKleke~ek~~~~~~e~e~~pe~----~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel-- 488 (1293)
T KOG0996|consen 415 KKLEKEIEKARRKKSELEKAPEK----ARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL-- 488 (1293)
T ss_pred HHHHHHHHHHHhhHHHHHhCchh----hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--
Confidence 77777777776666655543321 333444444444444443333333322 3334555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046695 461 LEERIVGEIEQLKASIAERDKHIENLNR-------SLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAE 533 (604)
Q Consensus 461 ~e~~le~eIs~lk~el~e~~~~Le~L~~-------ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~ 533 (604)
. ....++...+.+++....+|..|.. ..+.++..+......+.+....+..+...|..++.++.+.+..+.
T Consensus 489 -~-~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~ 566 (1293)
T KOG0996|consen 489 -M-PLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP 566 (1293)
T ss_pred -H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence 2 3334555555555555555555444 455555555566666666677777777777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 534 DAHRMVGELRLKAKELEEEIEKQRVV 559 (604)
Q Consensus 534 elk~kl~ELK~rv~eLeEeve~qk~~ 559 (604)
.++.....++.++..+..++++.+..
T Consensus 567 ~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 567 KLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888777763
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=0.00066 Score=79.75 Aligned_cols=152 Identities=22% Similarity=0.350 Sum_probs=85.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKA--- 495 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~--- 495 (604)
+..+...+...+.+.+..+..+...+.++..++-.+...+. ..+.+..++..++......+-..+.+...+-.
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~----~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e 895 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD----KVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQE 895 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHH
Confidence 45555556666666666666666666666666665555552 23333333333333333333333333322222
Q ss_pred -----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHH
Q 046695 496 -----------ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK-----------------GAEDAHRMVGELRLKAK 547 (604)
Q Consensus 496 -----------el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~-----------------~l~elk~kl~ELK~rv~ 547 (604)
++..|..++..+...-..+...+..|..++.=+.. .-+.++.++.+|..+..
T Consensus 896 ~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~ 975 (1174)
T KOG0933|consen 896 KCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKE 975 (1174)
T ss_pred HHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHH
Confidence 33333333333333333333333333333333321 22346888999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 046695 548 ELEEEIEKQRVVILEGAEEKREAIRQL 574 (604)
Q Consensus 548 eLeEeve~qk~~i~~~aEeKreAIrQl 574 (604)
.|+..+-.+....+|.+|+|-.|++--
T Consensus 976 ~l~k~vn~~~m~mle~~E~~~~~lk~k 1002 (1174)
T KOG0933|consen 976 KLEKTVNPKNMDMLERAEEKEAALKTK 1002 (1174)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887643
No 42
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=0.0019 Score=75.85 Aligned_cols=338 Identities=18% Similarity=0.203 Sum_probs=183.5
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhh
Q 046695 231 ALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLD 310 (604)
Q Consensus 231 ~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~ 310 (604)
....++..+++.|..+...+...+.+|..|...++++..+ ....... +. .+...++.+.++..-++
T Consensus 675 ~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~-~~~~~~~-------~~------~l~~e~~~~k~e~~~v~ 740 (1200)
T KOG0964|consen 675 ESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVEND-RNAFKRE-------HE------KLKRELNTIKGEKSRVQ 740 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH-------HH------HHHHHHHHhhhHHHHHH
Confidence 3446666777777777777888888888888888887443 2222211 11 33444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695 311 NKVKALMEELRITKEKLMLSEAEIASLKQEVESNR-SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT 389 (604)
Q Consensus 311 ~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~-~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ 389 (604)
.-+......|..++..+...+...+.++.++.+-. ..---.-.++++....+|..+..++.....+...+..++..+..
T Consensus 741 ~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~ 820 (1200)
T KOG0964|consen 741 ESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEA 820 (1200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666666666666664421 11122334556666666677777777677777777777777776
Q ss_pred hhhh-HHHHHHHHHHHHHHHHhhhch-HHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Q 046695 390 SLSD-RDHEVRDLKMAVSDAEQKIFP-EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG 467 (604)
Q Consensus 390 qlq~-leeeI~eLk~~l~d~eekls~-eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~ 467 (604)
.+.. +.-++.+|.+.+.++...=.. +-...+.++.....++.....++..++..+....+.|..+...+..+. .++.
T Consensus 821 ~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~-~lek 899 (1200)
T KOG0964|consen 821 NLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK-NLEK 899 (1200)
T ss_pred HHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 6543 244555565555544322111 111144555555555555566666666666666666666666652222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHH------
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISR------------DDRMDQMEKHLQQLHMEHTELI------ 529 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~------------r~~I~emE~~L~qLr~E~e~le------ 529 (604)
+.... ...+..++-+...+..|-.+..++.+.+..+ +...+++-+.|.....+..+..
T Consensus 900 ~~~~~----~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VNKkA 975 (1200)
T KOG0964|consen 900 EKKDN----INFDKELEKLVRRKHMLLKKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVNKKA 975 (1200)
T ss_pred HHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhhHHH
Confidence 22221 3333556655555555555444433333111 1123334444444444433332
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhH--HHHHhhHHHH
Q 046695 530 -KGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSL--EHYRSGYISL 588 (604)
Q Consensus 530 -~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfsl--ehyR~~y~~L 588 (604)
.++.++-..-.+|..+..+|..=-+.-...|--+---|.+|| ++-|.. +||+.-|.+|
T Consensus 976 ldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai-~~TFkqV~knFsevF~~L 1036 (1200)
T KOG0964|consen 976 LDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAI-DLTFKQVKKNFSEVFSRL 1036 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHh
Confidence 233444444444444444444444444555566677899999 566664 7888888877
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.45 E-value=0.0052 Score=76.03 Aligned_cols=65 Identities=20% Similarity=0.420 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTEL 528 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~l 528 (604)
.++.++..+...+.........+.+........+..+..++......+...+..+..++.++..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 668 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQL 668 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555555655655555555555555555555555555555555555555555555544444333
No 44
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.44 E-value=0.00052 Score=77.22 Aligned_cols=118 Identities=17% Similarity=0.276 Sum_probs=69.4
Q ss_pred HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046695 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSE 373 (604)
Q Consensus 294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e 373 (604)
.+-..|.+......++..+|..+..++..+...+....+........+-.. ...+.+++.++..+.-++..+...+..+
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~-~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDY-LSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566666666666666666666666655555555544433 4456666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHhhh
Q 046695 374 RKEVSKLQERIKSLKTSLSDR-------DHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 374 ~~ei~~LqeeI~eLk~qlq~l-------eeeI~eLk~~l~d~eekl 412 (604)
+.++..|...|+.++.++... +..+.+|.+.+......+
T Consensus 175 k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h 220 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIH 220 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 666666666666666655443 445555555444444333
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.42 E-value=0.0013 Score=78.24 Aligned_cols=118 Identities=21% Similarity=0.308 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHL-QQLHMEHTELIKGAEDAHRMVGELRLKA 546 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L-~qLr~E~e~le~~l~elk~kl~ELK~rv 546 (604)
+|..+...++.+......+..+....+..+..++..+.-++..|..++.+. +.+..++.+++..+..+...+..+...+
T Consensus 338 Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444 4444444555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhhhhhhH---HHHHHHHhhhHHHHHhhH
Q 046695 547 KELEEEIEKQRVVILEGAEEK---REAIRQLCFSLEHYRSGY 585 (604)
Q Consensus 547 ~eLeEeve~qk~~i~~~aEeK---reAIrQlcfslehyR~~y 585 (604)
+.|.++....+..+.+..|+| ..-|+||--+++.+-...
T Consensus 418 ~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 418 NSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555 133666666666555333
No 46
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.36 E-value=0.0094 Score=69.64 Aligned_cols=170 Identities=13% Similarity=0.158 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
....++.+|....+.+..++..++..+.++.++++..-.. -.=+.+|.+++=.|+.+...++.++..++ .++++..++
T Consensus 407 ~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA-E~MV~qLtdknlnlEekVklLeetv~dlE-alee~~EQL 484 (1243)
T KOG0971|consen 407 KKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGA-EEMVEQLTDKNLNLEEKVKLLEETVGDLE-ALEEMNEQL 484 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHhhccCHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3334444444444444555555555555555555332221 12234555555566666665555555554 344444454
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 046695 459 TELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKG------- 531 (604)
Q Consensus 459 ~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~------- 531 (604)
.+........|..+|+.+.-.+..++.+++.-.+-+-...+-+...|..+..+.++|..+..+-......
T Consensus 485 ---~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~ 561 (1243)
T KOG0971|consen 485 ---QESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSV 561 (1243)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Confidence 2123334455667777776777888888999999999999999999999999999999988866544432
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Q 046695 532 ---AEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 532 ---l~elk~kl~ELK~rv~eLeEev 553 (604)
....+.++++.|.-..+++-.+
T Consensus 562 ~~et~dyk~~fa~skayaraie~Ql 586 (1243)
T KOG0971|consen 562 DPETFDYKIKFAESKAYARAIEMQL 586 (1243)
T ss_pred chhhhHHHHHHHHhHHHHHHHHHHH
Confidence 2345666777776666665555
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.36 E-value=0.0028 Score=72.49 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQK 411 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eek 411 (604)
.++.....+.....+|+.+-..++.+..-..........+...+..+......|...+....+.
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444455544444544444444444444444444444444444444444443333
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.32 E-value=0.00087 Score=75.62 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH 525 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~ 525 (604)
.++..|...+..+..+...+..+..++..++.....+..++......+.++...+.++.++.
T Consensus 341 el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 341 ELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444443
No 49
>PRK11637 AmiB activator; Provisional
Probab=98.32 E-value=0.00063 Score=74.97 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 046695 349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDL 401 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eL 401 (604)
+..+...|..+...+..++.++.....++..++.+|..+..++......+...
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444443
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.32 E-value=0.011 Score=68.94 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=53.7
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhcccCCCChHHHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhcc
Q 046695 190 GLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNS 269 (604)
Q Consensus 190 ~l~~~~~~le~e~~~~~~k~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~ 269 (604)
.+..||.+|+.|+..++..+.-....|= .+.......++.+..++-+...|+.++-.|..
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~--------------------rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~ 90 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENE--------------------RLSQLNQELRKECEDLELERKRLREEIKEYKF 90 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999866666644332221 22222233344455566777777777766633
Q ss_pred ccchhhhhhccCChhhhhhhhchHHHHhhhhccCCc
Q 046695 270 SETNNYLQADFGSPAEINVNMWDAELQEGINGLETP 305 (604)
Q Consensus 270 ~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~e 305 (604)
- =...+++-+.|+.|-- -||++|..|+..
T Consensus 91 r-E~rll~dyselEeENi------slQKqvs~Lk~s 119 (717)
T PF09730_consen 91 R-EARLLQDYSELEEENI------SLQKQVSVLKQS 119 (717)
T ss_pred H-HHHHhhhhHHHHHHHH------HHHHHHHHHHHh
Confidence 2 2235555667777766 777777777653
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.31 E-value=0.027 Score=69.91 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHH
Q 046695 240 EKKLRLANEKIHISNEEILRLKIEL 264 (604)
Q Consensus 240 ~~el~~~n~~~~~~e~ei~~lk~el 264 (604)
...|..++..+..+...|+.|...|
T Consensus 510 ~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 510 EEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444555555555444
No 52
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=98.31 E-value=0.0062 Score=63.71 Aligned_cols=217 Identities=22% Similarity=0.314 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 046695 315 ALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR 394 (604)
Q Consensus 315 ~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~l 394 (604)
.+-+++.+++++...+.+.|. |+.+.. ...+-++.++|..+..+-..+.++|+.++.....|..+|..+-..+..+
T Consensus 28 ky~ediei~Kekn~~Lqk~lK-LneE~l---tkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaA 103 (305)
T PF14915_consen 28 KYLEDIEILKEKNDDLQKSLK-LNEETL---TKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAA 103 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhHHHH---HHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666664 333322 3468889999999998889999999999988888888888888777766
Q ss_pred HHH-------HHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHH
Q 046695 395 DHE-------VRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVG 467 (604)
Q Consensus 395 eee-------I~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~ 467 (604)
-.. -.+++-+|..+.......++.++..++.+.+....|-+.|...+....+|+.++.+....+.
T Consensus 104 i~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLr-------- 175 (305)
T PF14915_consen 104 IQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALR-------- 175 (305)
T ss_pred HhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 222 23445556666655555666688889999999999999999888888888887777666652
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDS-------LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVG 540 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~-------Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ 540 (604)
+..-.|+.+...+.. ++.-...-...+....+.=+.++..|.+++.+=-=|.+++++++.+..
T Consensus 176 ----------EKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 176 ----------EKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333333 333333333333444455567777888888887777777777777766
Q ss_pred HHHHHHHHHHHHH
Q 046695 541 ELRLKAKELEEEI 553 (604)
Q Consensus 541 ELK~rv~eLeEev 553 (604)
--.--|.++...+
T Consensus 246 ~kek~ViniQ~~f 258 (305)
T PF14915_consen 246 NKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHhhHHHHH
Confidence 5554455554433
No 53
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.30 E-value=0.015 Score=66.42 Aligned_cols=118 Identities=19% Similarity=0.331 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHH
Q 046695 471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKG----AEDAHRMVGELRLKA 546 (604)
Q Consensus 471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~----l~elk~kl~ELK~rv 546 (604)
.+...+-.++..++.-.+....+..+-..|...+..-..+++.++-.++.|+.+++.+... .+.+...+..-++-.
T Consensus 591 ~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e 670 (786)
T PF05483_consen 591 ILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISE 670 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhH
Confidence 3333333444444444444444444444555555555555555555555555555555442 344566777777888
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHH-HH------HHhhhHHHHHhhHHHH
Q 046695 547 KELEEEIEKQRVVILEGAEEKREA-IR------QLCFSLEHYRSGYISL 588 (604)
Q Consensus 547 ~eLeEeve~qk~~i~~~aEeKreA-Ir------QlcfslehyR~~y~~L 588 (604)
.+|..+|++.|++.-+..--|+|. || -.-=-.|.|.+.|.+.
T Consensus 671 ~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDki 719 (786)
T PF05483_consen 671 EELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKI 719 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999998888888775 22 2222358888888765
No 54
>PRK11637 AmiB activator; Provisional
Probab=98.29 E-value=0.0014 Score=72.13 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR 394 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~l 394 (604)
.+..++..+...+.+|..++.++.....++..++.+|......+..+
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444333
No 55
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.26 E-value=0.0088 Score=62.79 Aligned_cols=173 Identities=20% Similarity=0.321 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhH
Q 046695 350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSL---KTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGL 426 (604)
Q Consensus 350 eqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eL---k~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~L 426 (604)
..+..++....+....+..++......+.++-+.+... .-.+..++.+|..|...+.. .-++++... ++
T Consensus 65 deineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T--~~L~~e~E~------~l 136 (294)
T COG1340 65 DEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT--SVLTPEEER------EL 136 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh--cCCChHHHH------HH
Confidence 33444444444445555555555555555555544433 22333445555555443332 223333322 22
Q ss_pred HHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046695 427 YEEKACLVEQLREWESR------GRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL 500 (604)
Q Consensus 427 qEk~~sLe~eL~ele~~------i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L 500 (604)
-.+++.|+.++..+... +..+-.++..+.... . .+-..|..+-+++......+..++...+.+..+.+.+
T Consensus 137 vq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~---~-e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~ 212 (294)
T COG1340 137 VQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKA---R-EIHEKIQELANEAQEYHEEMIKLFEEADELRKEADEL 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344444444332 333444444444444 4 5666777777777777777777777777777777777
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 046695 501 ESDVISRDDRMDQMEKHLQQLHMEHTELIKGAED 534 (604)
Q Consensus 501 eqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~e 534 (604)
-.++......+.++...+..++.++..+...+..
T Consensus 213 he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~ 246 (294)
T COG1340 213 HEEFVELSKKIDELHEEFRNLQNELRELEKKIKA 246 (294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777766666655554443
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.25 E-value=0.0011 Score=76.37 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=87.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
+..++..|..++..|..++...-.....+..-+..-+.++ . .++..+..+.....+....|+.+...+..+.-
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL---~-ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR--- 157 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERL---A-ELEEELERLQEQQEDRQKLLEQLQSDKATASR--- 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHhhhcccchHHHH---
Confidence 4444444444444444444443333333333333333333 2 45556666777777777777777766665443
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHMEH-------TELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI 571 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E~-------e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAI 571 (604)
+...-..++..+.+|.+..-.|..+. ..-...-.++..++++++.++.++.+.|+.....+..+.+.-+.-.
T Consensus 158 -AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~ 236 (617)
T PF15070_consen 158 -ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYL 236 (617)
T ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33334455555555555444444443 2222233467778888888888888888776665555555333222
Q ss_pred HHHhhhHHHHHhhHHHH
Q 046695 572 RQLCFSLEHYRSGYISL 588 (604)
Q Consensus 572 rQlcfslehyR~~y~~L 588 (604)
. -|-||+-+|+.|
T Consensus 237 ~----~Lqqy~a~~q~l 249 (617)
T PF15070_consen 237 G----HLQQYVAAYQQL 249 (617)
T ss_pred H----HHHHHHHHHHHH
Confidence 2 467888888877
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.25 E-value=0.022 Score=65.98 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 046695 489 SLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKR 568 (604)
Q Consensus 489 ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKr 568 (604)
++..+.-.+-+..-.....+..+++++++...+-.....+.....+.+..+..|..-...+.+.++.||.-|....-+|+
T Consensus 331 qkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~ 410 (1265)
T KOG0976|consen 331 QKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKK 410 (1265)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 34444444444444444444444444444444444445555556666666667777777788888888888877666644
No 58
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.24 E-value=0.0038 Score=71.99 Aligned_cols=294 Identities=17% Similarity=0.202 Sum_probs=151.8
Q ss_pred HhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHHHHHH
Q 046695 296 QEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNR--------SEKIQTLQNQLQLAQKDIATWK 367 (604)
Q Consensus 296 q~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~--------~~kieqLq~eLe~~q~eie~i~ 367 (604)
.+....+...+..+..++..+.++.......+..++..|..|++.+.... .....+|+.++..++++++.+.
T Consensus 21 k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~ 100 (617)
T PF15070_consen 21 KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE 100 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555677777888888888777888888888888888765321 1234578888888888898888
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-------------HHHHHHhHHHHHHHHH
Q 046695 368 SKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-------------IKAEILGLYEEKACLV 434 (604)
Q Consensus 368 ~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-------------l~~ei~~LqEk~~sLe 434 (604)
.+++........|-.-+.+.+.++.+++..+..+.....+...-+....+. ++..+..+++.-..|.
T Consensus 101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 101 EQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 887776655555544445555666666666666555444332222111100 3333333333333333
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046695 435 EQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQM 514 (604)
Q Consensus 435 ~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~em 514 (604)
++.-++...+++-.--.+.+...+ . .++..+..++..+......+..|..+.+.+-.-+.-....|...-..-..+
T Consensus 181 ne~~elt~~lq~Eq~~~keL~~kl---~-~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L 256 (617)
T PF15070_consen 181 NENMELTSALQSEQHVKKELQKKL---G-ELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEEL 256 (617)
T ss_pred HhhhHhhHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222222222222233333 2 233444444445545445555555555444443333222222222222333
Q ss_pred HHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------h--------
Q 046695 515 EKH-------LQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGA--------------E-------- 565 (604)
Q Consensus 515 E~~-------L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~a--------------E-------- 565 (604)
.++ +++|+.+-......+......+.+.+..+..+....+.++..++-+| +
T Consensus 257 ~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ 336 (617)
T PF15070_consen 257 HKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPS 336 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcc
Confidence 322 23343332222223334445555556666666666666666554211 1
Q ss_pred -----hHHHHHH---------------HHhhhHHHHHhhHHHHHHHHh
Q 046695 566 -----EKREAIR---------------QLCFSLEHYRSGYISLRKAVI 593 (604)
Q Consensus 566 -----eKreAIr---------------QlcfslehyR~~y~~L~~~~~ 593 (604)
+-|||+. +||.-|+.-|..|+.|.+.++
T Consensus 337 ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va 384 (617)
T PF15070_consen 337 IPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVA 384 (617)
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 1466653 456667777778888877776
No 59
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.22 E-value=0.023 Score=64.98 Aligned_cols=32 Identities=19% Similarity=0.054 Sum_probs=17.9
Q ss_pred HHHHHHHhhhHHHHHhhHHHHHHHHhcCCCcc
Q 046695 568 REAIRQLCFSLEHYRSGYISLRKAVIGHKGVA 599 (604)
Q Consensus 568 reAIrQlcfslehyR~~y~~L~~~~~gh~~~~ 599 (604)
|.-|++|.--|.---.++++|-|-+..-+||.
T Consensus 611 R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPL 642 (961)
T KOG4673|consen 611 RGEIEDLQRRLQAAERRCEELIQQVPETTRPL 642 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccHH
Confidence 45555555555555555555555555455553
No 60
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.15 E-value=0.0077 Score=63.23 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 046695 363 IATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQ 410 (604)
Q Consensus 363 ie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~ee 410 (604)
+..|.++-......+..+.+.+.++..+...+.++|.+|+..-.++..
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555555555555555554444333
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.10 E-value=0.029 Score=64.19 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls 413 (604)
.+......+.....+|+.+-..++.+..-.......+..+...+..+......|...+....+.+.
T Consensus 272 ~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~ 337 (560)
T PF06160_consen 272 ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT 337 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456666666666777777766677666555555666666666666666666666666665555553
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.10 E-value=0.039 Score=63.26 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDR---LESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGE 541 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~---Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~E 541 (604)
+++.+..+...+.+..+....|..+.+.+...... -...+.....++..++..+..+.............+...+.+
T Consensus 308 vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~lee 387 (569)
T PRK04778 308 VEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEE 387 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 33344444444444444444444444444443100 000133333444444444444444443333344445555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 046695 542 LRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAV 592 (604)
Q Consensus 542 LK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~~~ 592 (604)
+..++..+++.....+..|.++..+=.+|.. -|++||.-...+...+
T Consensus 388 l~e~leeie~eq~ei~e~l~~Lrk~E~eAr~----kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 388 ILKQLEEIEKEQEKLSEMLQGLRKDELEARE----KLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 5555555555555555555554443333333 3555665555555544
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.09 E-value=0.022 Score=71.68 Aligned_cols=162 Identities=10% Similarity=0.133 Sum_probs=74.9
Q ss_pred HHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 046695 295 LQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSER 374 (604)
Q Consensus 295 Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~ 374 (604)
.+..+.++...+.++..++..|..+...+..-+.... ++..+..++..+ ...++.++..++.....++....++....
T Consensus 305 tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l-~~~LeELee~Lee~eeeLeeleeeleele 382 (1486)
T PRK04863 305 EQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERY-QADLEELEERLEEQNEVVEEADEQQEENE 382 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555554433322222 222222222222 33444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-------------HHHHHHhHHHHHHHHHHHHHHHH
Q 046695 375 KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-------------IKAEILGLYEEKACLVEQLREWE 441 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-------------l~~ei~~LqEk~~sLe~eL~ele 441 (604)
.++..++.++..++.++.++...+..+++.+....+.+...... +...+.++..++..++.++..++
T Consensus 383 eEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE 462 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLE 462 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555544444444444444443333333221111 45555555555555555555555
Q ss_pred HhhhhHHHHHHHHHHhh
Q 046695 442 SRGRSLEDELRIIKTQK 458 (604)
Q Consensus 442 ~~i~sLe~eIkql~~E~ 458 (604)
.++..++..+.++....
T Consensus 463 ~kL~~lea~leql~~~~ 479 (1486)
T PRK04863 463 QKLSVAQAAHSQFEQAY 479 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555554
No 64
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.06 E-value=0.021 Score=71.74 Aligned_cols=23 Identities=4% Similarity=0.050 Sum_probs=12.2
Q ss_pred HHHHHhhhhhhhhHHHHHHHHhh
Q 046695 554 EKQRVVILEGAEEKREAIRQLCF 576 (604)
Q Consensus 554 e~qk~~i~~~aEeKreAIrQlcf 576 (604)
+.+....+..+.+=...|..+|+
T Consensus 658 ~~~i~~l~~~~~g~~~~l~~~~~ 680 (1486)
T PRK04863 658 DEEIERLSQPGGSEDPRLNALAE 680 (1486)
T ss_pred HHHHHhhhccCCCccHHHHHHHH
Confidence 33333445555555666666653
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.04 E-value=0.0099 Score=65.21 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=55.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 480 DKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVV 559 (604)
Q Consensus 480 ~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~ 559 (604)
...+..|...+..+..+-..+..-......+...+..-+.+-+.-..++...+..-..++.+|+.+-.+|...|.+....
T Consensus 167 ~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 167 KATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444555555555555555555555556666667778888888888888888877777
Q ss_pred hhhhhhhHHHHHH
Q 046695 560 ILEGAEEKREAIR 572 (604)
Q Consensus 560 i~~~aEeKreAIr 572 (604)
+. .+-|+|||=|
T Consensus 247 aA-~~re~~aa~~ 258 (420)
T COG4942 247 AA-KAREAAAAAE 258 (420)
T ss_pred HH-HHHHHHHHHH
Confidence 77 6666666543
No 66
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.046 Score=61.66 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHH
Q 046695 446 SLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD----RLESDVISRDDRMDQMEKHLQQL 521 (604)
Q Consensus 446 sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~----~Leqe~~s~r~~I~emE~~L~qL 521 (604)
+...++.+...++ . .++..+.+++..|.++...+..+.-+...+..... ..+.....-+.+|+.|++++..+
T Consensus 429 ei~~~~~~~~~~~---~-tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l 504 (581)
T KOG0995|consen 429 EISEELHEAENEL---E-TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNL 504 (581)
T ss_pred HHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 3 45566666666666666666555555554444333 33344455566666666666665
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH-HHHhhhH
Q 046695 522 HMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI-RQLCFSL 578 (604)
Q Consensus 522 r~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAI-rQlcfsl 578 (604)
......-. .+.-..+.+++-++. .++-..+|+|.+| -||-+-|
T Consensus 505 ~l~~~~~m----------~~a~~~v~s~e~el~----~~~~~~~eer~ki~~ql~~~i 548 (581)
T KOG0995|consen 505 KLVLNTSM----------KEAEELVKSIELELD----RMVATGEEERQKIAKQLFAVI 548 (581)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 55433222 222233333333332 2333446667777 5665544
No 67
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.03 E-value=0.008 Score=68.09 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 046695 378 SKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQ 457 (604)
Q Consensus 378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E 457 (604)
.....+|.-+-+.+...+..|..|+..+..+.+++.-.+...... .-.-+......|..+++.|..|-..|+++++.
T Consensus 231 ~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~---~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S 307 (629)
T KOG0963|consen 231 AAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA---KIDDIDALGSVLNQKDSEIAQLSNDIERLEAS 307 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555555555554333331111 11222333333333444444555555555444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 458 KTELEERIVGEIEQLKASIAERDKHIE 484 (604)
Q Consensus 458 ~~e~e~~le~eIs~lk~el~e~~~~Le 484 (604)
+.++......+|+.+..++......|+
T Consensus 308 ~~~e~e~~~~qI~~le~~l~~~~~~le 334 (629)
T KOG0963|consen 308 LVEEREKHKAQISALEKELKAKISELE 334 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432222233334444333333333333
No 68
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.99 E-value=0.018 Score=63.37 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHhHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL----ESDVISRDDRMDQMEKHLQQLHMEH----TELIKGAEDA 535 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L----eqe~~s~r~~I~emE~~L~qLr~E~----e~le~~l~el 535 (604)
.+++.|.+++..+.++...|.-+..+....-.++..+ +.+....+.++.-||+.|.+|+..- -..++.+..+
T Consensus 484 ~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~ 563 (622)
T COG5185 484 TLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQST 563 (622)
T ss_pred eHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHH
Confidence 3667777777777777777776666666555544433 3456667778888888888877643 2233344444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046695 536 HRMVGELRLKAKELEEEI 553 (604)
Q Consensus 536 k~kl~ELK~rv~eLeEev 553 (604)
..++.++...+..-+..+
T Consensus 564 ~i~ld~~~~~~n~~r~~i 581 (622)
T COG5185 564 EIKLDELKVDLNRKRYKI 581 (622)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 69
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.95 E-value=1.8e-06 Score=102.58 Aligned_cols=162 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHH
Q 046695 233 FARIVGYEKKLRLANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNK 312 (604)
Q Consensus 233 ~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~k 312 (604)
..++..+...+..++.++..++--..+|..+++.+..+ +++...... .+.+....|...+.+....
T Consensus 327 ~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~e-Le~~~~~~~-------------~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 327 ERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSE-LEKAQAAAA-------------ELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------------HHHHHHHhHHHHHHHHHHH
Confidence 35566666666666666666666666666666666443 443332222 3333444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 046695 313 VKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLS 392 (604)
Q Consensus 313 l~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq 392 (604)
+..+..++..+.........++..|++.+..+ ...+..+......++.+|..+...+......+..|......|..++.
T Consensus 393 ~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~-~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~ 471 (859)
T PF01576_consen 393 VEELQAERDAAQREARELETELFKLKNELEEL-QEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKE 471 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHH
Confidence 55555555555566666777777777777666 55667777777777777777777766666666666666666666665
Q ss_pred hHHHHHHHHHHHHHHHH
Q 046695 393 DRDHEVRDLKMAVSDAE 409 (604)
Q Consensus 393 ~leeeI~eLk~~l~d~e 409 (604)
.+...+.+++.++...+
T Consensus 472 El~~~leE~E~~l~~~E 488 (859)
T PF01576_consen 472 ELQEQLEEAEDALEAEE 488 (859)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555444433
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.90 E-value=0.012 Score=68.84 Aligned_cols=94 Identities=15% Similarity=0.274 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 046695 309 LDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLK 388 (604)
Q Consensus 309 l~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk 388 (604)
+..+++.|+.+|+.....=++++.+|..+.+-=-.+ ...+.+++.+.+.+++.+..+...-+..+..+..|+.+|++..
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~l-k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSL-KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554443322233333333333211112 3345666666666666666666666666666666666666666
Q ss_pred hhhhhHHHHHHHHHH
Q 046695 389 TSLSDRDHEVRDLKM 403 (604)
Q Consensus 389 ~qlq~leeeI~eLk~ 403 (604)
.....++.++.+-+.
T Consensus 502 ~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 502 RQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655543
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.093 Score=60.92 Aligned_cols=163 Identities=17% Similarity=0.231 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh----------HHHHHHhH
Q 046695 357 QLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ----------IKAEILGL 426 (604)
Q Consensus 357 e~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~----------l~~ei~~L 426 (604)
+--+.++.++..+-..++..+..+....+.|..++..++..+..|...++|..-.+...|.. ..+++.++
T Consensus 412 ewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~ql 491 (1118)
T KOG1029|consen 412 EWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQL 491 (1118)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHH
Confidence 33345555666666666667777777777777777777777777777777666555444433 12223333
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 046695 427 YEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVIS 506 (604)
Q Consensus 427 qEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s 506 (604)
+-++.-+...|.++--+-+.|..++++..... . .-..+.+.|+...+..+.. +..+++.+.+|.++..+
T Consensus 492 qarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~---~-~~~~~~s~L~aa~~~ke~i-------rq~ikdqldelskE~es 560 (1118)
T KOG1029|consen 492 QARIKELQEKLQKLAPEKQELNHQLKQKQSAH---K-ETTQRKSELEAARRKKELI-------RQAIKDQLDELSKETES 560 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc---c-CcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333332 1 1112233333333332222 44567788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 507 RDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 507 ~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
..+.|+.++++|++|+..+.....
T Consensus 561 k~~eidi~n~qlkelk~~~~~q~l 584 (1118)
T KOG1029|consen 561 KLNEIDIFNNQLKELKEDVNSQQL 584 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999887765443
No 72
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.90 E-value=0.084 Score=60.16 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046695 377 VSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKT 456 (604)
Q Consensus 377 i~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~ 456 (604)
.+.|..+-..+..++..++..|..|..++.+...+++..++.+.-+..-....+.-+-.++.+-+.++..+++++.++..
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777788887777777777777666655555666666666777777777777777777776666
Q ss_pred hhh
Q 046695 457 QKT 459 (604)
Q Consensus 457 E~~ 459 (604)
+++
T Consensus 264 ql~ 266 (629)
T KOG0963|consen 264 QLA 266 (629)
T ss_pred HHH
Confidence 663
No 73
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.86 E-value=3.2e-06 Score=100.39 Aligned_cols=210 Identities=23% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHH
Q 046695 322 ITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKE-VSKLQERIKSLKTSLSDRDHEVRD 400 (604)
Q Consensus 322 ~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~e-i~~LqeeI~eLk~qlq~leeeI~e 400 (604)
.+...++.++.++..|...+..- ......++..+..+..++..|+.+++..... +..|.+-=+.+..++.++...+.+
T Consensus 261 ~L~~~l~~le~e~~~L~eqleeE-~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 261 ALEKQLRQLEHELEQLREQLEEE-EEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666544 4456777788888888888888887776544 333433333344444444444444
Q ss_pred HHHHHHHHHhh---hchHHHhHHHHHHhHHHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Q 046695 401 LKMAVSDAEQK---IFPEKAQIKAEILGLYEEK-------ACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIE 470 (604)
Q Consensus 401 Lk~~l~d~eek---ls~eKa~l~~ei~~LqEk~-------~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs 470 (604)
+...+..++.. +..+-..+.+.+.+....+ ..+...+..|...+..+...+.....+. - .+..+|-
T Consensus 340 ~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~---r-~~~te~~ 415 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREA---R-ELETELF 415 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---H-HHHHHHH
Confidence 43333322221 1111111333333444333 3444444444444433333333333333 2 4666777
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 046695 471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAH 536 (604)
Q Consensus 471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk 536 (604)
.++..+......++.+.++.-.+..++..|...+......+.+|+...+.|..++..+...+.++.
T Consensus 416 ~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E 481 (859)
T PF01576_consen 416 KLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAE 481 (859)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788887888888887777777788777777777666666666666666665555544444433
No 74
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.84 E-value=0.0041 Score=63.73 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-----HHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-----IKAE 422 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-----l~~e 422 (604)
++...+..+..++++++.++ ..+..++.++..+++++..++.+|.++...+.+++.++...+.. |..+
T Consensus 25 ~~~~~~~~l~k~~~e~e~~~-------~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E 97 (239)
T COG1579 25 RIKEIRKALKKAKAELEALN-------KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE 97 (239)
T ss_pred hhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34444555555554444444 44444445555555555555556666666666555555444433 5556
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
+.....+..+|+.++..+...+..++.+|..+..++
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655555555555555554444
No 75
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.0062 Score=72.36 Aligned_cols=171 Identities=19% Similarity=0.303 Sum_probs=80.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-HHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 046695 367 KSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-IKAEILGLYEEKACLVEQLREWESRGR 445 (604)
Q Consensus 367 ~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-l~~ei~~LqEk~~sLe~eL~ele~~i~ 445 (604)
...++.....+...+|+|.++.-.++..+..+.+|+..+...+..++..=-. ..+.|....+..- ......+..
T Consensus 710 ~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-----~~~~a~k~~ 784 (1141)
T KOG0018|consen 710 ELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-----QQEFAKKRL 784 (1141)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-----HHHHHHHHH
Confidence 3334444455556667788888888888888888888777777666542222 2222333332211 112222233
Q ss_pred hHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHhHHHHHHHHHHH
Q 046695 446 SLEDELRIIKTQKTELE-ERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL-------ESDVISRDDRMDQMEKH 517 (604)
Q Consensus 446 sLe~eIkql~~E~~e~e-~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L-------eqe~~s~r~~I~emE~~ 517 (604)
+++.++..+..++.-+. .....++..|...+......++.+.....++...+.++ .+.+..+...+++..+.
T Consensus 785 ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~ 864 (1141)
T KOG0018|consen 785 EFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKI 864 (1141)
T ss_pred HHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544441111 02344444555555555555555555444444444443 12223333334444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 046695 518 LQQLHMEHTELIKGAEDAHRMVGEL 542 (604)
Q Consensus 518 L~qLr~E~e~le~~l~elk~kl~EL 542 (604)
+..+..++.++...+..++-++..+
T Consensus 865 ~~~~~~~~tkl~~~i~~~es~ie~~ 889 (1141)
T KOG0018|consen 865 LRRLVKELTKLDKEITSIESKIERK 889 (1141)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 4444444444444443333333333
No 76
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.83 E-value=0.083 Score=60.59 Aligned_cols=91 Identities=15% Similarity=0.381 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~ 547 (604)
....+...+..+...+..+......-..-.+.+...+......+..+++....+......+......++.++..++..+.
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555444444555567777888888888888888888888888888888999999999999999
Q ss_pred HHHHHHHHHHH
Q 046695 548 ELEEEIEKQRV 558 (604)
Q Consensus 548 eLeEeve~qk~ 558 (604)
++...+++.++
T Consensus 425 ~ikR~lek~nL 435 (560)
T PF06160_consen 425 EIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHcCC
Confidence 99999988876
No 77
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.82 E-value=0.17 Score=61.40 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=7.5
Q ss_pred ccccccccccc
Q 046695 9 MESRKSHSWWW 19 (604)
Q Consensus 9 ~~~~~~~~~~~ 19 (604)
..-++.+-||-
T Consensus 256 g~yG~ecDwWS 266 (1317)
T KOG0612|consen 256 GEYGRECDWWS 266 (1317)
T ss_pred cccCCccchhh
Confidence 45677788884
No 78
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.77 E-value=0.04 Score=60.57 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=22.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~ 547 (604)
.|..-+.++..-...++..|..-+...+++-.....++..+..+.....
T Consensus 200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 200 KLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555545444444444444444443333
No 79
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.74 E-value=0.14 Score=59.07 Aligned_cols=231 Identities=22% Similarity=0.303 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHhhhhh
Q 046695 318 EELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKL----QERIKSLKTSLSD 393 (604)
Q Consensus 318 eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~L----qeeI~eLk~qlq~ 393 (604)
.++..+...|..+..+|..+..++..+ ...+.++..++.......+.+...+. ....+..| +.-|..|+.-++.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l-~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL~~~v~~ 405 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKML-KSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 333333334444444444444444333 33344444444444444444433332 11111111 2334444444444
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHh-------HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHH----
Q 046695 394 RDHEVRDLKMAVSDAEQKIFPEKAQ-------IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELE---- 462 (604)
Q Consensus 394 leeeI~eLk~~l~d~eekls~eKa~-------l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e---- 462 (604)
....+..|........--+..+... ...+..+...++..++.++..+...++.-++.++++..++..+-
T Consensus 406 s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~ 485 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVN 485 (594)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4444444444333322222222222 33445556666677777777777777776777777666662211
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695 463 --------ERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD-------RLESDVISRDDRMDQMEKHLQQLHMEHTE 527 (604)
Q Consensus 463 --------~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~-------~Leqe~~s~r~~I~emE~~L~qLr~E~e~ 527 (604)
+++.+.|.+=+.+|..+-.+...|.++...+.+.+. ++-=.-...+......=+.|..|+.....
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~ 565 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQ 565 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 145666666666666666666666666666666554 22222233556666666678888887777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 528 LIKGAEDAHRMVGELRLKAKELEEEIE 554 (604)
Q Consensus 528 le~~l~elk~kl~ELK~rv~eLeEeve 554 (604)
|...+.+ .+.+...+.+|++.|+
T Consensus 566 Li~~v~~----tG~~~rEirdLe~qI~ 588 (594)
T PF05667_consen 566 LIETVEE----TGTISREIRDLEEQID 588 (594)
T ss_pred HHHHHHH----hhHHHHHHHHHHHHHH
Confidence 7765543 3334444455555554
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.73 E-value=0.03 Score=65.58 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046695 495 AERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILE 562 (604)
Q Consensus 495 ~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~ 562 (604)
.+...|...+..+.++-..||+.|..=.+=+..|=.-+++++..+.-+...+..-+.+|..+|.-|.+
T Consensus 587 ~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 587 KDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666677777766666666666666777777777777777777777666665543
No 81
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.73 E-value=0.034 Score=55.13 Aligned_cols=113 Identities=25% Similarity=0.309 Sum_probs=59.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 046695 423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLES 502 (604)
Q Consensus 423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leq 502 (604)
...+.+...+|-..-..+++..++|..+|..++.+. .++..+.+.+......|..+...++..+-.-+.
T Consensus 76 ~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen-----------~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 76 AKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN-----------GKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444 333444444455555565566666666555555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 503 DVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 503 e~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev 553 (604)
-+-.++..+.+...++.+|..-++..... ..+||..++.|++.+
T Consensus 145 l~~~~da~l~e~t~~i~eL~~~ieEy~~~-------teeLR~e~s~LEeql 188 (193)
T PF14662_consen 145 LICQRDAILSERTQQIEELKKTIEEYRSI-------TEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 55555666666666666665555544444 455555555555544
No 82
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.041 Score=64.06 Aligned_cols=95 Identities=19% Similarity=0.279 Sum_probs=51.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 046695 424 LGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESD 503 (604)
Q Consensus 424 ~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe 503 (604)
.+.++.+..+...+.+...++..+..++.++++++ + .+...|+.....+...+..=..+..+...+++++..|.++
T Consensus 788 ~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~---~-t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~ 863 (970)
T KOG0946|consen 788 LGDQEQVIELLKNLSEESTRLQELQSELTQLKEQI---Q-TLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEK 863 (970)
T ss_pred hhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH---H-HHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHH
Confidence 34445555555557777777777777777777776 3 3333444444444444433334444555555555555555
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 046695 504 VISRDDRMDQMEKHLQQLH 522 (604)
Q Consensus 504 ~~s~r~~I~emE~~L~qLr 522 (604)
+....+.|..+-..+..+.
T Consensus 864 ~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 864 IKFGNNLIKELTEKISSLE 882 (970)
T ss_pred hhhhhhHHHHHhhhhhhHH
Confidence 5555555555444444433
No 83
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.23 Score=60.03 Aligned_cols=43 Identities=19% Similarity=0.453 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhcchHHHH--------HHhhhcchhHHHHHHHHHHHHHH
Q 046695 37 EMDQSVKRMLKLIEEDGDSFAKK--------AEMYYQKRPELISHVEEFYRMYR 82 (604)
Q Consensus 37 ~~~~~~~~~l~~i~~d~ds~a~~--------ae~y~~~rp~l~~~v~~~~~~y~ 82 (604)
+....|..+|.+ |.|.|-.- +......-|+.-.+|.+++....
T Consensus 118 ~v~~~i~~llgl---d~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~ 168 (908)
T COG0419 118 DVNEKIEELLGL---DKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEK 168 (908)
T ss_pred hHHHHHHHHhCC---CHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchh
Confidence 666666666655 44444422 22223333435555555554443
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.71 E-value=0.12 Score=59.73 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHH
Q 046695 511 MDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRK 590 (604)
Q Consensus 511 I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~ 590 (604)
|-++=..|+..+.++.++-.+...+++.++.+..++.- .+--....|.--|- |.++-|+.=-.|--++++|..|-+
T Consensus 493 IlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R---tF~v~dElifrdAK-kDe~~rkaYK~La~lh~~c~~Li~ 568 (594)
T PF05667_consen 493 ILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR---TFTVTDELIFRDAK-KDEAARKAYKLLASLHENCSQLIE 568 (594)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443444444444444444444444444444443332 23333555666666 999999999999999999999987
Q ss_pred HHhc
Q 046695 591 AVIG 594 (604)
Q Consensus 591 ~~~g 594 (604)
.+..
T Consensus 569 ~v~~ 572 (594)
T PF05667_consen 569 TVEE 572 (594)
T ss_pred HHHH
Confidence 7653
No 85
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.17 Score=57.33 Aligned_cols=111 Identities=19% Similarity=0.325 Sum_probs=75.3
Q ss_pred HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVES--NRSEKIQTLQNQLQLAQKDIATWKSKLN 371 (604)
Q Consensus 294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~s--l~~~kieqLq~eLe~~q~eie~i~~kLE 371 (604)
+.+.-+..+++..+.....+..++.++.....++..+..++..|++.+.. +--...+.+..+.+.+...++.+..+++
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666677777788888877777777777777777776531 1123578888888888888888888888
Q ss_pred HHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHH
Q 046695 372 SERKEVSKLQ----ERIKSLKTSLSDRDHEVRDLKMA 404 (604)
Q Consensus 372 ~e~~ei~~Lq----eeI~eLk~qlq~leeeI~eLk~~ 404 (604)
...+++-.+. .....+.+.+.++...+..+.-.
T Consensus 357 ~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 357 RLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766553 44455555555555555555443
No 86
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.68 E-value=0.17 Score=59.85 Aligned_cols=120 Identities=21% Similarity=0.288 Sum_probs=64.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 046695 334 IASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413 (604)
Q Consensus 334 I~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls 413 (604)
...+..+++.+ ......+...+..+...++..+.+|.+....+..|+.++..++......+.++...+..+..++-++.
T Consensus 591 ~~el~eelE~l-e~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 591 KKELEEELEKL-ESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444444 33345555555555555555555555555555555555555555555555555555444444444432
Q ss_pred hHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 414 PEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 414 ~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
. +.+++..++.++..|+.+|..-..-...+..+-..++.++
T Consensus 670 ~----~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el 710 (769)
T PF05911_consen 670 D----LEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEEL 710 (769)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 2 4466777777888888887766555555555555544444
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.66 E-value=0.11 Score=62.94 Aligned_cols=22 Identities=45% Similarity=0.877 Sum_probs=15.3
Q ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 046695 61 EMYYQKRPELISHVEEFYRMYRSLAERYDHVT 92 (604)
Q Consensus 61 e~y~~~rp~l~~~v~~~~~~y~~laeryd~~~ 92 (604)
||.|.-=| ||- -+|.+.|..+.
T Consensus 273 EMlyG~TP--------FYa--dslveTY~KIm 294 (1317)
T KOG0612|consen 273 EMLYGETP--------FYA--DSLVETYGKIM 294 (1317)
T ss_pred HHHcCCCc--------chH--HHHHHHHHHHh
Confidence 55566666 664 47888888875
No 88
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.65 E-value=0.058 Score=53.51 Aligned_cols=123 Identities=20% Similarity=0.241 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q 046695 395 DHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQ 471 (604)
Q Consensus 395 eeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~ 471 (604)
++++.+|+..+..+++.-..+.++ +.-+...|..++..|..+...+.....-+..++.++..+. . .+..++-.
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~---~-~Lq~Ql~~ 141 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEK---A-TLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhh---H-HHHHHHHH
Confidence 344444444444444333333333 3333344444444444444444444445666666665555 2 45555655
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQL 521 (604)
Q Consensus 472 lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qL 521 (604)
...-+-..+..+.+.......+..-|.....-.+..|..|..++.+|.++
T Consensus 142 ~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 142 FESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666666666667777666666666677777777777777665
No 89
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.3 Score=59.04 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=7.2
Q ss_pred hHHHHHHhhhHHHH
Q 046695 189 QGLQRKVNELETEL 202 (604)
Q Consensus 189 ~~l~~~~~~le~e~ 202 (604)
..+.+++.+|+...
T Consensus 235 e~l~~~~~el~~~~ 248 (908)
T COG0419 235 EALEERLAELEEEK 248 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555544
No 90
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.64 E-value=0.24 Score=57.74 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRD 400 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~e 400 (604)
.|..++..+..++.....++..
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 91
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.63 E-value=0.22 Score=57.26 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=27.3
Q ss_pred cCCCChHHHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695 224 AKNENPEALFARIVGYEKKLRLANEKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 224 ~~~~~~~~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~ 267 (604)
.++..-+++..|++.+++.+-.+-+----+--||.+||.+|.--
T Consensus 399 ~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA 442 (961)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 44555677778888888777644443223445677777777653
No 92
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.12 Score=61.85 Aligned_cols=99 Identities=18% Similarity=0.260 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695 466 VGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLK 545 (604)
Q Consensus 466 e~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~r 545 (604)
..++.-+...+..-...|.........+++.+..+...+...+..++.|...+..+......+-..+..+...+...+..
T Consensus 380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~ 459 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEE 459 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhh
Confidence 44555566666666666666677777788888888888877888888888888888887777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 046695 546 AKELEEEIEKQRVVILEGA 564 (604)
Q Consensus 546 v~eLeEeve~qk~~i~~~a 564 (604)
...+-+++..-...|++.-
T Consensus 460 ~~e~n~eL~~~~~ql~das 478 (1141)
T KOG0018|consen 460 PYELNEELVEVLDQLLDAS 478 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 7777777766666666543
No 93
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.60 E-value=0.22 Score=57.95 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=20.4
Q ss_pred HHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 295 LQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQ 339 (604)
Q Consensus 295 Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~ 339 (604)
+...+..++..+..+..++..+..++..+...+..+...+..+..
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444
No 94
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.55 E-value=0.13 Score=60.52 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH 525 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~ 525 (604)
.++..+..+.+.-...-.+|.++.++|+.+-+.+..-+ .++...+.+.++.|.+++..+
T Consensus 512 ~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~---~e~~~~~~e~e~si~ql~l~~ 570 (980)
T KOG0980|consen 512 ELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE---EEREALRLEAERSINQLELDS 570 (980)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHhhHHHhhccc
Confidence 34444555555555555666667777776666554333 222234455555566655553
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.53 E-value=0.11 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=18.2
Q ss_pred hHHHHHHhhhHHHHHHHHhhhhhh
Q 046695 189 QGLQRKVNELETELREAKEKLHSQ 212 (604)
Q Consensus 189 ~~l~~~~~~le~e~~~~~~k~~~~ 212 (604)
..|..+|..|+.+...++..|...
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~e 46 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETE 46 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 578889999998887666666544
No 96
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.052 Score=63.22 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 517 HLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 517 ~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev 553 (604)
.+..+..|.+.+.-.+...+.++..|+..+.+|...+
T Consensus 905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~ 941 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPV 941 (970)
T ss_pred cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCh
Confidence 3445555555555566666666666666666655444
No 97
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.49 E-value=0.46 Score=57.46 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=58.9
Q ss_pred hhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695 275 YLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQN 354 (604)
Q Consensus 275 ~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~ 354 (604)
++....+.+..|. .+-+.|..++ +..--.+|..|..+++....+|.+.+.-++..+.-+ .+.++|+.
T Consensus 1483 Flt~~~adp~si~------~vA~~vL~l~--lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di-----~ra~~L~s 1549 (1758)
T KOG0994|consen 1483 FLTQPDADPDSIE------EVAEEVLALE--LPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDI-----ARAENLQS 1549 (1758)
T ss_pred HhcCCCCCHHHHH------HHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhH-----HHHHHHHH
Confidence 4555666777777 6666664443 444457888899999888888888888887776643 35677887
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 046695 355 QLQLAQKDIATWKSKLNSER 374 (604)
Q Consensus 355 eLe~~q~eie~i~~kLE~e~ 374 (604)
+-..+.+.-+.++.+.+..+
T Consensus 1550 ~A~~a~~~A~~v~~~ae~V~ 1569 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVV 1569 (1758)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 77777666665554444444
No 98
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.47 E-value=0.36 Score=55.68 Aligned_cols=94 Identities=14% Similarity=0.281 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA 546 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv 546 (604)
.++..++.++..-.-.-..|......+.-+...+-++...+--.+.-+..+|..-+..-..+-..+..+...-..|+..+
T Consensus 471 kQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrnel 550 (786)
T PF05483_consen 471 KQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNEL 550 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544322222234444444444455555555555555555666666666666666666666666666777777
Q ss_pred HHHHHHHHHHHHhh
Q 046695 547 KELEEEIEKQRVVI 560 (604)
Q Consensus 547 ~eLeEeve~qk~~i 560 (604)
..+.+++..+...|
T Consensus 551 es~~eel~~k~~Ev 564 (786)
T PF05483_consen 551 ESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776665544
No 99
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.47 E-value=0.25 Score=62.29 Aligned_cols=31 Identities=23% Similarity=0.091 Sum_probs=23.1
Q ss_pred hhhhHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 046695 563 GAEEKREAIRQLCFSLEHYRSGYISLRKAVI 593 (604)
Q Consensus 563 ~aEeKreAIrQlcfslehyR~~y~~L~~~~~ 593 (604)
.+++++..-+++++...+.|..-..+.+.|+
T Consensus 960 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~~ 990 (1353)
T TIGR02680 960 RAEEKRAEADATLDERAEARDHAIGQLREFA 990 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455557777788888888888877777776
No 100
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.28 Score=55.30 Aligned_cols=150 Identities=23% Similarity=0.230 Sum_probs=74.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE---RIVGEIEQLKASIAERDKHIENLNRSLDSLKA 495 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~---~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~ 495 (604)
+.-.|..+++.+..++.++...+.....+...-.++..-....+. .+..+|..+|-.=+.+-.+..+|..+-..|+.
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 555566666666666666665555555444433333332211110 12222222222222222333333334444444
Q ss_pred HHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 046695 496 ERDRLES---DVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIR 572 (604)
Q Consensus 496 el~~Leq---e~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIr 572 (604)
.|..|.+ +|+..+-.|+.++....=|+...+.. ..|.+-.++|=...++-+-.-|++=-
T Consensus 185 qVs~LR~sQVEyEglkheikRleEe~elln~q~ee~------------------~~Lk~IAekQlEEALeTlq~EReqk~ 246 (772)
T KOG0999|consen 185 QVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA------------------IRLKEIAEKQLEEALETLQQEREQKN 246 (772)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444432 33334444444444433333332222 23455567777777777777788877
Q ss_pred HHhhhHHHHHhhHH
Q 046695 573 QLCFSLEHYRSGYI 586 (604)
Q Consensus 573 QlcfslehyR~~y~ 586 (604)
-|---|+|||+...
T Consensus 247 alkkEL~q~~n~e~ 260 (772)
T KOG0999|consen 247 ALKKELSQYRNAED 260 (772)
T ss_pred HHHHHHHHhcchhh
Confidence 78888999998765
No 101
>PRK09039 hypothetical protein; Validated
Probab=97.46 E-value=0.025 Score=61.00 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=66.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046695 485 NLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGA 564 (604)
Q Consensus 485 ~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~a 564 (604)
.+......+..++..++..+.+..-.|.-+..+|..|+.++..++..+..++....+.+.++..|..++
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L----------- 181 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL----------- 181 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 334444555566666666677777777777777777777766666666666666666666666666666
Q ss_pred hhHHHHHHHHhhhHHHHHhhH-HHHHHHHhcCCC
Q 046695 565 EEKREAIRQLCFSLEHYRSGY-ISLRKAVIGHKG 597 (604)
Q Consensus 565 EeKreAIrQlcfslehyR~~y-~~L~~~~~gh~~ 597 (604)
..||-+---.|+.||+.+ .+||+++.+...
T Consensus 182 ---~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 212 (343)
T PRK09039 182 ---NVALAQRVQELNRYRSEFFGRLREILGDREG 212 (343)
T ss_pred ---HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCC
Confidence 344444556789999988 789888887643
No 102
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.46 E-value=0.25 Score=53.57 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 308 DLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESN 344 (604)
Q Consensus 308 el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl 344 (604)
.+.-++..+..++..+...+...+.+-+....|+...
T Consensus 78 di~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~ 114 (499)
T COG4372 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKA 114 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666665555555555555555555544
No 103
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.17 Score=52.73 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~ 547 (604)
++.....=+.--...|+.....+..|+..-..+...+.+.-....+++..+.+|..++.+....+..+.-....+...+.
T Consensus 135 RvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a 214 (265)
T COG3883 135 RVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKA 214 (265)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333333344455555566666666666666666666777777777777777777777766666666666666666
Q ss_pred HHH
Q 046695 548 ELE 550 (604)
Q Consensus 548 eLe 550 (604)
.|.
T Consensus 215 ~l~ 217 (265)
T COG3883 215 ALE 217 (265)
T ss_pred HHH
Confidence 666
No 104
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.43 Score=55.69 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKA 495 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~ 495 (604)
++.++..|..++..|..++......+......|....... + -...+|.++++.|.++...|.-|--++..+..
T Consensus 442 l~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~---e-~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQR---E-LMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHH---H-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4444444444444444444444444444444444444444 2 23345555555555555555555444444444
No 105
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.40 E-value=0.018 Score=59.07 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=19.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
++.++..+.+++..+..++..+...+..++..+..+....
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544444444444444443333
No 106
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.39 E-value=0.61 Score=56.52 Aligned_cols=17 Identities=6% Similarity=0.395 Sum_probs=9.6
Q ss_pred HhHHHHHHHHHHHHHHH
Q 046695 33 ENLEEMDQSVKRMLKLI 49 (604)
Q Consensus 33 ~~l~~~~~~~~~~l~~i 49 (604)
+...+|++|++.+-+++
T Consensus 1201 s~f~~me~kl~~ir~il 1217 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAIL 1217 (1758)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 44455666666555555
No 107
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.39 E-value=0.0023 Score=75.16 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHH
Q 046695 534 DAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYR 582 (604)
Q Consensus 534 elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR 582 (604)
.....+++|+.+|..++.+..++|.+-..-. .-+|.-||+|==|+
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks----~eFr~av~~llGyk 647 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKAKS----QEFREAVYSLLGYK 647 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHSEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcce
Confidence 3455688999999999999999998886544 44666688875443
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.38 E-value=0.028 Score=53.49 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695 350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 350 eqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl 412 (604)
..|+-+.+.+..+.+.+..++.....+...+..+|..|..+++.++.+|..+...+..+...+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555555555544444
No 109
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.37 E-value=0.43 Score=54.24 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=70.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 046695 423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLES 502 (604)
Q Consensus 423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leq 502 (604)
+-.+..+...++.++..++.++..+..++.+.+.++ .++...+......+...+...... +.++..+..
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----e~e~~l~~~ 344 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL-------EGEQESFREQPQELSQQLEPELTT----EAELRLYYQ 344 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHH
Confidence 334444444444444444444444444444444443 344444444444444444333222 444555555
Q ss_pred HHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 046695 503 DVISRDDRMDQ-----------MEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI 571 (604)
Q Consensus 503 e~~s~r~~I~e-----------mE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAI 571 (604)
+++..+..+.. .+.++..|+....... -...-.++..++..|.+.+-..-.++--+.-||..
T Consensus 345 el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~-----~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~a-- 417 (511)
T PF09787_consen 345 ELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA-----SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNA-- 417 (511)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh-----ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhh--
Confidence 55555443332 2223333322222111 00123567777777777775555555566667754
Q ss_pred HHHhhhHHHHHhhHHH
Q 046695 572 RQLCFSLEHYRSGYIS 587 (604)
Q Consensus 572 rQlcfslehyR~~y~~ 587 (604)
|+|.||....-|+.
T Consensus 418 --l~lqlErl~~~l~~ 431 (511)
T PF09787_consen 418 --LRLQLERLETQLKE 431 (511)
T ss_pred --ccccHHHHHHHHHh
Confidence 67778877777665
No 110
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.34 E-value=4.7e-05 Score=88.98 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhhhcHHHHHHHHHHHhhhccc
Q 046695 249 KIHISNEEILRLKIELQKYNSS 270 (604)
Q Consensus 249 ~~~~~e~ei~~lk~ele~~~~~ 270 (604)
++..++.+|.++|..|+.+...
T Consensus 309 r~~klE~~ve~YKkKLed~~~l 330 (713)
T PF05622_consen 309 RADKLENEVEKYKKKLEDLEDL 330 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777777777777766433
No 111
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.25 E-value=0.0017 Score=76.15 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhH
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSL 447 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sL 447 (604)
.++++.-.+.-+..+..++...+.+.
T Consensus 400 ~~~RLerq~~L~~kE~d~LR~~L~sy 425 (722)
T PF05557_consen 400 LIRRLERQKALATKERDYLRAQLKSY 425 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444433
No 112
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.19 E-value=0.17 Score=50.58 Aligned_cols=126 Identities=22% Similarity=0.313 Sum_probs=74.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE 501 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le 501 (604)
-+++-.+++..|+..+.......+.++..+++...++ . .+...+..+++-..+ . .| .+++.+..++..+.
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el---~-k~~~~l~~L~~L~~d--k---nL-~eReeL~~kL~~~~ 131 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL---L-KTKDELKHLKKLSED--K---NL-AEREELQRKLSQLE 131 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHc--C---Cc-hhHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666555 2 222222222221110 0 11 14677777888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 502 SDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 502 qe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i 560 (604)
..+...+..|..++.++.-...- ....+..-..+..++...+..+..+|..++..|
T Consensus 132 ~~l~~~~~ki~~Lek~leL~~k~---~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 132 QKLQEKEKKIQELEKQLELENKS---FRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887765443332 334445556677777777777777777666555
No 113
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.17 E-value=1.2 Score=55.20 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hh
Q 046695 489 SLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVIL-----EG 563 (604)
Q Consensus 489 ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~-----~~ 563 (604)
++-.+..++..++.+....+.+|..+. +...+.++..|......+--..+.+-..+..++..+.+.+..+. +.
T Consensus 1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~ 1086 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDA 1086 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccH
Confidence 334445555566666666665555554 44444555555555555555566666667777777777777666 44
Q ss_pred hhhHHHHHHHH---hhhHHHHHhhHHHHHHHHh
Q 046695 564 AEEKREAIRQL---CFSLEHYRSGYISLRKAVI 593 (604)
Q Consensus 564 aEeKreAIrQl---cfslehyR~~y~~L~~~~~ 593 (604)
++.=|.|+=++ =|+.+|-=--|+-|.+|+.
T Consensus 1087 ~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim 1119 (1294)
T KOG0962|consen 1087 EKNYRKALIELKTTELSNKDLDKYYKALDKAIM 1119 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443 2333333333455666654
No 114
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.11 E-value=0.98 Score=53.20 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=8.2
Q ss_pred hHHHHHhhHH
Q 046695 577 SLEHYRSGYI 586 (604)
Q Consensus 577 slehyR~~y~ 586 (604)
-|+|||.|-.
T Consensus 475 mLD~yr~~r~ 484 (717)
T PF09730_consen 475 MLDYYRQGRQ 484 (717)
T ss_pred HHHHHHhhhh
Confidence 5899998866
No 115
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.09 E-value=0.63 Score=50.63 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046695 353 QNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSD 407 (604)
Q Consensus 353 q~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d 407 (604)
..++..+..+.+..+..+...+....+.+..+..+..+-+++..++..|-+....
T Consensus 108 ~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~q 162 (499)
T COG4372 108 RSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQ 162 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555555555555555554444333
No 116
>PRK11281 hypothetical protein; Provisional
Probab=97.08 E-value=1.4 Score=54.49 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=7.8
Q ss_pred HhhhhcHHHHHHHHHHHhhh
Q 046695 248 EKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 248 ~~~~~~e~ei~~lk~ele~~ 267 (604)
+++..+..++.....+++.+
T Consensus 87 k~l~~Ap~~l~~a~~~Le~L 106 (1113)
T PRK11281 87 QQLAQAPAKLRQAQAELEAL 106 (1113)
T ss_pred HHHHHhHHHHHHHHHHHHHh
Confidence 33333333444444444433
No 117
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.07 E-value=1.4 Score=54.38 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 046695 346 SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSD 393 (604)
Q Consensus 346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~ 393 (604)
..++..++.++..+.++.+-++.+.+-...++..++.+++.|.+.+..
T Consensus 186 ~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 186 KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555554443
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.99 E-value=0.44 Score=50.70 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=80.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046695 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL 500 (604)
Q Consensus 421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L 500 (604)
+.+..|+.++..|+.+...+..+...|.......+.+= +.-|...-..+...-..+-.|..+...-..+...-
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE-------qqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQ 232 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE-------QQLVLDCVKQLSEANQQIASLSEELARKTEENRRQ 232 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH-------HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665544444443333222222211 11122222333333334444444444444455555
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046695 501 ESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAE 565 (604)
Q Consensus 501 eqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aE 565 (604)
-.++.....+|..+...++++-.+.+++...+...+..-..|...+.++.+++..--.+.-+.-|
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE 297 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQE 297 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777888888888888888888888888888888888888665555544433
No 119
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.98 E-value=0.099 Score=49.68 Aligned_cols=27 Identities=22% Similarity=0.694 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695 489 SLDSLKAERDRLESDVISRDDRMDQME 515 (604)
Q Consensus 489 ek~~Le~el~~Leqe~~s~r~~I~emE 515 (604)
+.+.+..+...|.+.+..+.++|.+++
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 120
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.94 E-value=0.52 Score=47.15 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=38.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK-----TELEERIVGEIEQLKASIAERDKHIENLNRSLDSL 493 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~-----~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~L 493 (604)
++..+.+.++....+...+...+.++..+...++.+..=. .+-+ .+..++..+...++..+..|..|.++....
T Consensus 73 Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eRe-eL~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 73 LRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAERE-ELQRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555544421 1111 455555555555666555555555544333
No 121
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.93 E-value=0.00021 Score=83.58 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHLQQ 520 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L~q 520 (604)
...++..|+.++..++..|..++..+.+
T Consensus 620 ~~~e~~~L~~ql~e~~~~i~~lE~~~e~ 647 (713)
T PF05622_consen 620 SSPEIQALKKQLQEKDRRIESLEKELEK 647 (713)
T ss_dssp ----------------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444444444444444444433
No 122
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.69 Score=48.31 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVIS 506 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s 506 (604)
++..+.++..-..+++..+..|+.++...+.-+..+..+..+
T Consensus 167 l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 167 LEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444554444444444444433333
No 123
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.90 E-value=0.95 Score=49.68 Aligned_cols=78 Identities=26% Similarity=0.253 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHhhhHHHHHhhH
Q 046695 511 MDQMEKHLQQLHMEHTELIKGAED----AHRMVGELRLKAKELEEEIEK-QRVVILEGAEEKREAIRQLCFSLEHYRSGY 585 (604)
Q Consensus 511 I~emE~~L~qLr~E~e~le~~l~e----lk~kl~ELK~rv~eLeEeve~-qk~~i~~~aEeKreAIrQlcfslehyR~~y 585 (604)
...+-.+|+-|+.|.+.+...+.. ...++.+++..-..++++.++ |+..|-++ |+||| ||--|+--|+..
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~--erRea---lcr~lsEsessl 322 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINEL--ERREA---LCRMLSESESSL 322 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHH---HHHHhhhhhHHH
Confidence 344555566666666555554433 345666777777777777654 55555544 78998 699999999988
Q ss_pred HHHHHHHh
Q 046695 586 ISLRKAVI 593 (604)
Q Consensus 586 ~~L~~~~~ 593 (604)
+.+...|-
T Consensus 323 emdeery~ 330 (552)
T KOG2129|consen 323 EMDEERYL 330 (552)
T ss_pred HHHHHHHH
Confidence 88877653
No 124
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=96.80 E-value=0.36 Score=49.91 Aligned_cols=114 Identities=23% Similarity=0.259 Sum_probs=65.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGR------------SLEDELRIIKTQKTELEE-RIVGEIEQLKASIAERDKHIEN 485 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~------------sLe~eIkql~~E~~e~e~-~le~eIs~lk~el~e~~~~Le~ 485 (604)
++..|.++-..+..-+.+|.+.+..+. .|=++-+-+..+..++-- ..++.|.+|..+++..+..=++
T Consensus 175 inl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seE 254 (330)
T KOG2991|consen 175 INLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEE 254 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHH
Confidence 566777777777777777776666554 222333444444422221 2566777777777776666666
Q ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046695 486 LNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGA 532 (604)
Q Consensus 486 L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l 532 (604)
|.+..+.|..-+.+|..+++.+..-|--+-..|..-+.+++.+.+..
T Consensus 255 lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 255 LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666555555555555554444444444433
No 125
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.79 E-value=0.93 Score=48.55 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHT 526 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e 526 (604)
.++..++.++......|.....+...++.++..+...+......+.++..+|.++.+...
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555544444433
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.75 E-value=0.65 Score=46.58 Aligned_cols=95 Identities=21% Similarity=0.332 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHH
Q 046695 360 QKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLRE 439 (604)
Q Consensus 360 q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~e 439 (604)
..+++.++.+.......+..+..+...+..-+..+..++.+|+..+...+.. +..+..+..++..++.++..
T Consensus 33 Keei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd--------K~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 33 KEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD--------KQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555666666677777777777777777777766654322 22334444445555555555
Q ss_pred HHHhhhhHHHHHHHHHHhhhHHH
Q 046695 440 WESRGRSLEDELRIIKTQKTELE 462 (604)
Q Consensus 440 le~~i~sLe~eIkql~~E~~e~e 462 (604)
+.-+.+.|+.++.++..+..++.
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555553333
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.73 E-value=0.91 Score=48.36 Aligned_cols=8 Identities=25% Similarity=-0.006 Sum_probs=4.9
Q ss_pred CCCCCCCc
Q 046695 132 KSGPRAAG 139 (604)
Q Consensus 132 ~~~~~~~~ 139 (604)
+-++||++
T Consensus 6 ~y~~r~d~ 13 (306)
T PF04849_consen 6 PYKLRADT 13 (306)
T ss_pred CCCccccc
Confidence 44677764
No 128
>PF13514 AAA_27: AAA domain
Probab=96.70 E-value=2.7 Score=52.10 Aligned_cols=79 Identities=29% Similarity=0.339 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhhh---HHHHHHHHhhhHHHHH
Q 046695 508 DDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR--LKAKELEEEIEKQRVVILEGAEE---KREAIRQLCFSLEHYR 582 (604)
Q Consensus 508 r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK--~rv~eLeEeve~qk~~i~~~aEe---KreAIrQlcfslehyR 582 (604)
...+..+...+..+..++..+...+..++..+..+. ..+..+..+++..+..|-+.+++ -+-|..=|.-+++.||
T Consensus 895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r 974 (1111)
T PF13514_consen 895 EAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYR 974 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333 23455666666677777766654 4566677888899999
Q ss_pred hhHH
Q 046695 583 SGYI 586 (604)
Q Consensus 583 ~~y~ 586 (604)
..|+
T Consensus 975 ~~~~ 978 (1111)
T PF13514_consen 975 EERQ 978 (1111)
T ss_pred HHhh
Confidence 9885
No 129
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.64 E-value=0.5 Score=44.98 Aligned_cols=62 Identities=27% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695 491 DSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEE 552 (604)
Q Consensus 491 ~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEe 552 (604)
..-+..+..|..++..+...++.++-.|..++.++..+.+.+...+.+|.+|.....++...
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444444443333
No 130
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.62 E-value=1.3 Score=47.40 Aligned_cols=20 Identities=5% Similarity=0.089 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWK 367 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~ 367 (604)
..+.|...|...+..+.++.
T Consensus 76 ~c~EL~~~I~egr~~~~~~E 95 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIE 95 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666666666665555555
No 131
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.57 E-value=1.4 Score=47.11 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhhhhhhhH
Q 046695 548 ELEEEIEKQRVVILEGAEEK 567 (604)
Q Consensus 548 eLeEeve~qk~~i~~~aEeK 567 (604)
.+..+.+.-...|+++++++
T Consensus 262 ~~k~k~e~~n~~l~~m~eer 281 (309)
T PF09728_consen 262 TWKSKWEKSNKALIEMAEER 281 (309)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 34444455566666666653
No 132
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.56 E-value=3.7 Score=52.06 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=4.4
Q ss_pred HHHHHHhcC
Q 046695 587 SLRKAVIGH 595 (604)
Q Consensus 587 ~L~~~~~gh 595 (604)
.++..|.+|
T Consensus 1050 ~~~~~l~~~ 1058 (1353)
T TIGR02680 1050 ELRRTLAAL 1058 (1353)
T ss_pred HHHHhhhcc
Confidence 455555443
No 133
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.54 E-value=0.36 Score=45.10 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHH
Q 046695 349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK 416 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eK 416 (604)
+..++..+..-.......+.+.+.+-..-+..-..|..+++++..+...+..|+.....+...+....
T Consensus 26 ~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e 93 (132)
T PF07926_consen 26 LQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESE 93 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444445555554444444456666666666666667776666666555554433
No 134
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=2.2 Score=48.51 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHH---HHHhhhHHHHHhhHHHHH
Q 046695 551 EEIEKQRVVILEGAEEKREAI---RQLCFSLEHYRSGYISLR 589 (604)
Q Consensus 551 Eeve~qk~~i~~~aEeKreAI---rQlcfslehyR~~y~~L~ 589 (604)
.++.+++..+.-+.-+|-+-. +--.-+|+|-+..|..-+
T Consensus 318 seiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~ 359 (772)
T KOG0999|consen 318 SEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQR 359 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHH
Confidence 344666666666666665432 222345566655555443
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.49 E-value=0.27 Score=55.01 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 046695 396 HEVRDLKMAVSDAE 409 (604)
Q Consensus 396 eeI~eLk~~l~d~e 409 (604)
.++.+++..+..+.
T Consensus 254 ~~l~~l~~~l~~l~ 267 (498)
T TIGR03007 254 GRIEALEKQLDALR 267 (498)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 136
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=2.8 Score=49.24 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=11.3
Q ss_pred chHHHHHHhhhHHHHHHHHhhhh
Q 046695 188 DQGLQRKVNELETELREAKEKLH 210 (604)
Q Consensus 188 ~~~l~~~~~~le~e~~~~~~k~~ 210 (604)
+..++..|..|-.-+++...-+.
T Consensus 260 ~~~in~e~~~L~Ssl~e~~~~l~ 282 (698)
T KOG0978|consen 260 FSSINREMRHLISSLQEHEKLLK 282 (698)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444443
No 137
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.42 E-value=3.2 Score=49.49 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 69 ELISHVEEFYRMYRSL 84 (604)
Q Consensus 69 ~l~~~v~~~~~~y~~l 84 (604)
+||.+|.|-|--|..+
T Consensus 190 pLI~lIqds~~lY~y~ 205 (980)
T KOG0980|consen 190 PLIPLIQDSSGLYDYL 205 (980)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 5888888877776654
No 138
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.38 E-value=1.2 Score=44.39 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695 347 EKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409 (604)
Q Consensus 347 ~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e 409 (604)
.+|..++.+++.++.++..+..+|.......-.-...++.+.......++++..+...+.++.
T Consensus 11 rri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 11 RRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356667777777777777777777766655555555666777777777777777777666554
No 139
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.36 E-value=1.3 Score=44.30 Aligned_cols=96 Identities=10% Similarity=0.186 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695 310 DNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT 389 (604)
Q Consensus 310 ~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ 389 (604)
+..+......|..+-..-...+..+..+.+....+ ..+++.+...+..++-.-+....+.+.-...+.-+...+.....
T Consensus 24 qErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kd-EE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ee 102 (205)
T KOG1003|consen 24 QERLATALQKLEEAEQAADESERGMKVIENRAQKL-EEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEE 102 (205)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444444443333334444444444444444 44566666666666544444444444444444444444444444
Q ss_pred hhhhHHHHHHHHHHHHH
Q 046695 390 SLSDRDHEVRDLKMAVS 406 (604)
Q Consensus 390 qlq~leeeI~eLk~~l~ 406 (604)
.....+..+.+|...+.
T Consensus 103 raE~~Es~~~eLeEe~~ 119 (205)
T KOG1003|consen 103 RAEAAESQSEELEEDLR 119 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 140
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=3.2 Score=48.34 Aligned_cols=93 Identities=22% Similarity=0.209 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~ 547 (604)
+|..++-.+.......+.+......+..+...+++=|...++..-+++..+.++-.++..-...+..+...+..|...+.
T Consensus 406 q~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~ 485 (716)
T KOG4593|consen 406 QERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLS 485 (716)
T ss_pred HHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444445556666666
Q ss_pred HHHHHHHHHHHhh
Q 046695 548 ELEEEIEKQRVVI 560 (604)
Q Consensus 548 eLeEeve~qk~~i 560 (604)
..+..+..|+..+
T Consensus 486 ~~~q~l~~qr~e~ 498 (716)
T KOG4593|consen 486 SREQSLLFQREES 498 (716)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666554
No 141
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.30 E-value=0.77 Score=49.22 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHhhhchHHHhHHHHHHhH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRD-HEVRDLKMAVSDAEQKIFPEKAQIKAEILGL 426 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~le-eeI~eLk~~l~d~eekls~eKa~l~~ei~~L 426 (604)
.+.-|..+|+..+.+.+.|+...+..+.+-..|.....++.-+..... -.+.-.+ ....+...-...+.....|
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~-----~~~~La~lL~~sre~Nk~L 84 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEK-----ENKNLAQLLSESREQNKKL 84 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCccc-----chhhHHHHHHHHHHHHHHH
Confidence 355566777777777777775555555443333333333331100000 0000000 0011111111233444555
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046695 427 YEEKACLVEQLREWESRGRSLEDELRIIKTQKT----------------ELEERIVGEIEQLKASIAERDKHIENLNRSL 490 (604)
Q Consensus 427 qEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~----------------e~e~~le~eIs~lk~el~e~~~~Le~L~~ek 490 (604)
...+..|++++.+++..+..|..++........ .++ .+..++.+|.-++....++.+++..++
T Consensus 85 ~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLE-k~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 85 KEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLE-KLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666655555443332 122 444455555555555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 046695 491 DSLKAERDRLESDV 504 (604)
Q Consensus 491 ~~Le~el~~Leqe~ 504 (604)
+....++..|-.++
T Consensus 164 D~yk~K~~RLN~EL 177 (319)
T PF09789_consen 164 DAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 142
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.24 E-value=1.5 Score=44.01 Aligned_cols=147 Identities=19% Similarity=0.272 Sum_probs=71.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKA--- 495 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~--- 495 (604)
++.-.....+-+.+|+.++..+.......+..+..+..+. . .+..-+..+..+..++...|....+.+..+..
T Consensus 18 YndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN---~-~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~ 93 (201)
T PF13851_consen 18 YNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQEN---K-RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666677777777766666666666666666665 3 45555556666666666666655554443332
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 046695 496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQ 573 (604)
Q Consensus 496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQ 573 (604)
.+..++.++...+-+-..++..+..+..++..+...+.. .+.++. +..++..-+=.+|+..+..+=|+|+|-.+
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~---~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES---AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333333333333333333333333322221 111111 11223333333455555566666666443
No 143
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.16 E-value=3.3 Score=47.10 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=13.7
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhh
Q 046695 190 GLQRKVNELETELREAKEKLHSQ 212 (604)
Q Consensus 190 ~l~~~~~~le~e~~~~~~k~~~~ 212 (604)
.++-++.++..|+...+..+..+
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666566655555
No 144
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.13 E-value=0.21 Score=53.32 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=53.6
Q ss_pred hhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHhhhHH
Q 046695 298 GINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTL----QNQLQLAQKDIATWKSKLNSE 373 (604)
Q Consensus 298 ~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqL----q~eLe~~q~eie~i~~kLE~e 373 (604)
-+..|..++..+..+...|...+..++.-+-.+......|+.++..+ ......+ ++++..+++.+......+...
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L-~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~ 223 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL-KQLEDELEDCDPTELDRAKEKLKKLLQEIMIK 223 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555544445555555555544433 2222222 224444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 046695 374 RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQ 410 (604)
Q Consensus 374 ~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~ee 410 (604)
+..+..++.++..++..++....++.++..++..++.
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555554443
No 145
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.10 E-value=2.6 Score=45.31 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHHHHH
Q 046695 313 VKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQ--------------KDIATWKSKLNSERKEVS 378 (604)
Q Consensus 313 l~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q--------------~eie~i~~kLE~e~~ei~ 378 (604)
+.+-.+.+.++..+|..+..+-...+..++.+ ..+...++....... +.-..+..-+...+.+..
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqL-qer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk 82 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQL-QERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNK 82 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHH
Confidence 44556677777788888888887777765555 333333333332221 011122222344445555
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSD 407 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d 407 (604)
.|..++..|...+.+++..+.=|.+.+..
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 55566666666555555555555555554
No 146
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.02 E-value=1.6 Score=51.24 Aligned_cols=179 Identities=25% Similarity=0.203 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 254 NEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAE 333 (604)
Q Consensus 254 e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~e 333 (604)
+-||.+|=.|||.+-+- +-.. ..--+...||-..| +-+..+-..|.-.|+++...|++-++-
T Consensus 355 DsE~qRLitEvE~cisl-LPav-~g~tniq~EIALA~----------------QplrsENaqLrRrLrilnqqlreqe~~ 416 (861)
T PF15254_consen 355 DSEVQRLITEVEACISL-LPAV-SGSTNIQVEIALAM----------------QPLRSENAQLRRRLRILNQQLREQEKA 416 (861)
T ss_pred hHHHHHHHHHHHHHHHh-hhhh-hccccchhhhHhhh----------------hhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 55788888888887332 1111 11122233333222 223334445556666666666654433
Q ss_pred H-----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 046695 334 I-----ASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDA 408 (604)
Q Consensus 334 I-----~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~ 408 (604)
- .....||.+| +.---.||.+|....+-++.++.+.++..+-+..+.++-+.+..-+.+.+.++.+.+
T Consensus 417 ~k~~~~~~~n~El~sL-qSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~k------ 489 (861)
T PF15254_consen 417 EKTSGSQDCNLELFSL-QSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENK------ 489 (861)
T ss_pred cccCCCcccchhhHHH-HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------
Confidence 3 2335577777 555566777777777777777777777766666665666666555555555555544
Q ss_pred HhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 409 EQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 409 eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
++|..+.+.+++++....-.+.+++-+|...+.+...|.-.+++..+|+
T Consensus 490 -q~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi 538 (861)
T PF15254_consen 490 -QQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEI 538 (861)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHH
Confidence 4455555667778888888888888888888888888888888888887
No 147
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.01 E-value=2.7 Score=44.83 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 430 KACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 430 ~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
++.|...+..+..........+.++..++
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EK 165 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREK 165 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444434444444444444
No 148
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=4.5 Score=47.22 Aligned_cols=77 Identities=9% Similarity=0.166 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVG 540 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ 540 (604)
.+...+...++....+...+..+.++++.+++-|..+............++...+.......+.++..+..+...+.
T Consensus 409 Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~ 485 (716)
T KOG4593|consen 409 DLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLS 485 (716)
T ss_pred HHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777777777777777777666665555555555555555554444444444444433333333
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.96 E-value=1.4 Score=52.21 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 513 QMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA 546 (604)
Q Consensus 513 emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv 546 (604)
..+.++.+|+++.+-..+....+-.+..+.+...
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4466677778877777777776666666666544
No 150
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.96 E-value=0.29 Score=50.14 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
.+..+|...-..++.-...|.++.++++.|..+...+..++......|+.||+-|++.+.++......+..+...+..|+
T Consensus 15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556666677788888888888888888888888888888999999999999888888888888888888
Q ss_pred HHHHHHHHH
Q 046695 544 LKAKELEEE 552 (604)
Q Consensus 544 ~rv~eLeEe 552 (604)
..++.++.+
T Consensus 95 ~~in~~R~e 103 (230)
T PF10146_consen 95 DEINELRKE 103 (230)
T ss_pred HHHHHHHHH
Confidence 888888777
No 151
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.94 E-value=2 Score=46.45 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 046695 311 NKVKALMEELRI 322 (604)
Q Consensus 311 ~kl~~L~eEL~~ 322 (604)
.++..+..++..
T Consensus 81 ~~l~~l~~~~~~ 92 (423)
T TIGR01843 81 ADAAELESQVLR 92 (423)
T ss_pred hHHHHHHHHHHH
Confidence 344444444443
No 152
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.93 E-value=3.7 Score=49.05 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhch---HHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP---EKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIK 455 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~---eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~ 455 (604)
.|+.+|.+++.++.....+...|..++...+.-+.. .+++..++|..+..++.+++++...+.-++..+..++.-..
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~ 168 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRN 168 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655555555443333322 22234455555555666666665555555555555555544
Q ss_pred Hhh
Q 046695 456 TQK 458 (604)
Q Consensus 456 ~E~ 458 (604)
.+.
T Consensus 169 ~E~ 171 (769)
T PF05911_consen 169 EER 171 (769)
T ss_pred HHH
Confidence 444
No 153
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.91 E-value=0.37 Score=57.00 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSE 373 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e 373 (604)
++..+..++..++.++...+.++...
T Consensus 238 ~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 238 QLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444443333
No 154
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=4.3 Score=46.16 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhch
Q 046695 349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~ 414 (604)
+..+|..+.....-+-.++.-......-+.+++.+++.+..-+....+++.+++..+..+.+....
T Consensus 347 v~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd 412 (654)
T KOG4809|consen 347 VNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD 412 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 333333333333333333333333334444445555555555555555555555555555444433
No 155
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.84 E-value=1.8 Score=48.47 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 046695 473 KASIAERDKHIENLNRSLDSLKAERDRLESDVI---SRDDRMDQMEKHLQQLHMEHTELIKGAED 534 (604)
Q Consensus 473 k~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~---s~r~~I~emE~~L~qLr~E~e~le~~l~e 534 (604)
...+......+..+..+...+...+..++.++. ....++..+..+....+.-...+...+.+
T Consensus 316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 316 QIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444443333333333 22334444444444444444444444433
No 156
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.78 E-value=2.1 Score=41.71 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 046695 380 LQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKT 459 (604)
Q Consensus 380 LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~ 459 (604)
|+-+...+..++++...++..|+..+...-+. +++++.++.++...+..+..+|......+
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~------------------L~h~keKl~~~~~~~~~l~~~l~~~~~~~- 107 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQI------------------LTHVKEKLHFLSEELERLKQELKDREEEL- 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34445555666666666666665554433332 34445555554444445555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 460 ELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELI 529 (604)
Q Consensus 460 e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le 529 (604)
. .+..++...+.+...+...+..|..+-..+ ..-.|..||......+..+...+..+++.+..++
T Consensus 108 --~-~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~--~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 108 --A-KLREELYRVKKERDKLRKQNKKLRQQGGLL--GVPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred --H-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344444444444444444444433332222 1234445555555666666666555555554443
No 157
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.77 E-value=6.8 Score=47.51 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=25.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
--..++.++..++..+.+++.....++..++....+.
T Consensus 760 ~~iea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a 796 (1072)
T KOG0979|consen 760 NNIEAERKIEKLEDNISFLEAREDLLKTALEDKKKEA 796 (1072)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666777777777777777777777776666
No 158
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.77 E-value=2.6 Score=42.68 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ 418 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~ 418 (604)
.+..+..+.+.+..++.++...+.....+-..+..-|..++..-..+...+.++...|....+.|...++.
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH 140 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777777777777777777777777777777777777777777777777666655
No 159
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.64 E-value=1.5 Score=40.86 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 046695 431 ACLVEQLR 438 (604)
Q Consensus 431 ~sLe~eL~ 438 (604)
..++.++.
T Consensus 62 ~~lr~e~~ 69 (132)
T PF07926_consen 62 QQLREELQ 69 (132)
T ss_pred HHHHHHHH
Confidence 33333333
No 160
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.63 E-value=8.6 Score=47.63 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=10.7
Q ss_pred HHHHHHHHh-cCCCccc
Q 046695 585 YISLRKAVI-GHKGVAV 600 (604)
Q Consensus 585 y~~L~~~~~-gh~~~~~ 600 (604)
-..||.-|. |.-|||-
T Consensus 493 ~~~Lr~~L~~GePCPVC 509 (1047)
T PRK10246 493 LEAQRAQLQAGQPCPLC 509 (1047)
T ss_pred HHHHHHhCCCCCCcCCC
Confidence 444777777 7777763
No 161
>PRK11281 hypothetical protein; Provisional
Probab=95.57 E-value=9.2 Score=47.62 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
+...+.++..+++.+.++.....+.+..+....+.+++++
T Consensus 290 Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666666555555555555554444444444
No 162
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.46 E-value=0.58 Score=43.39 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=41.4
Q ss_pred HHhhHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 486 LNRSLDSLKAERDRLESDV---ISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ 556 (604)
Q Consensus 486 L~~ek~~Le~el~~Leqe~---~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~q 556 (604)
|..+++.+.+++..|.... ......+..++.++.+|+..+..+=..+++-...+.||+..|..+++-+..|
T Consensus 42 l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 42 LEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333 2233445566666666666666666667777777777777777777777433
No 163
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.39 E-value=11 Score=47.24 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046695 496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGA 564 (604)
Q Consensus 496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~a 564 (604)
.+..+...+..+++.++.+-+.|+-.+.....+.+.+ .+..+..++.+++.++......|+..-
T Consensus 972 ~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl-----~~~~l~~q~~e~~re~~~ld~Qi~~~~ 1035 (1294)
T KOG0962|consen 972 QLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNL-----TLRNLERKLKELERELSELDKQILEAD 1035 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344555555555555555555554444433333332 455666777777777777776666554
No 164
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.32 E-value=6.1 Score=44.02 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHH
Q 046695 360 QKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLRE 439 (604)
Q Consensus 360 q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~e 439 (604)
+.+.+++...+.=...+++.++.++--|..++++++.++..|..+..+.-..+-+.++...+-+.-+..++.++..+.++
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~ 387 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEA 387 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHH
Confidence 34444445445555566666667777777777777777777766666544444444444444445555555555555554
Q ss_pred HHH
Q 046695 440 WES 442 (604)
Q Consensus 440 le~ 442 (604)
...
T Consensus 388 ~~~ 390 (554)
T KOG4677|consen 388 EGT 390 (554)
T ss_pred hhh
Confidence 433
No 165
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.25 E-value=5.2 Score=42.80 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Q 046695 349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDH 396 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~lee 396 (604)
...++.-|..++..++.....-.....+...|.+.++.+-.+..-.+.
T Consensus 109 ~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~ 156 (309)
T PF09728_consen 109 SEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREE 156 (309)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433333444444555555555555544433
No 166
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.25 E-value=5.3 Score=42.86 Aligned_cols=128 Identities=24% Similarity=0.281 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEK----HLQQLHMEHTELIKGAEDAHRMVGEL 542 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~----~L~qLr~E~e~le~~l~elk~kl~EL 542 (604)
..+..++.+...+...++.++.-...+....+.|..++...+....++++ .+..++.++..+...+.....++.++
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~ 230 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEEL 230 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555555544 45555555555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH--hh-----hHHHHHhhHHHHHHHHhcC
Q 046695 543 RLKAKELEEEIEKQRVVILEGAEEKREAIRQL--CF-----SLEHYRSGYISLRKAVIGH 595 (604)
Q Consensus 543 K~rv~eLeEeve~qk~~i~~~aEeKreAIrQl--cf-----slehyR~~y~~L~~~~~gh 595 (604)
+.++.++...|+.-...+.+.-++-++|=+.+ |- =+.-++.-|+-| +.++|=
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L-e~l~g~ 289 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLL-QSLTGW 289 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhCC
Confidence 66666666666555555555555544443332 32 134456666666 666664
No 167
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.25 E-value=3.9 Score=41.38 Aligned_cols=133 Identities=19% Similarity=0.243 Sum_probs=69.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHH
Q 046695 382 ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTEL 461 (604)
Q Consensus 382 eeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~ 461 (604)
..|..+-+....+-..+..++.+|+++-..|.- .+..+..+..--..|+..+. ....++.+...+...+
T Consensus 69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek----~K~vi~~~k~NEE~Lkk~~~-------ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK----QKEVIEGYKKNEETLKKCIE-------EYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344444444444445555555555554444422 12222222222223333333 3333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046695 462 EERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDA 535 (604)
Q Consensus 462 e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~el 535 (604)
....+..+...+.+|+.+... ...++..|...+....-.+.+++..|.+...+.++|...-+++
T Consensus 138 K~hAeekL~~ANeei~~v~~~----------~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 138 KAHAEEKLEKANEEIAQVRSK----------HQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322344555555555553333 5556667777777777888888888888888888888766554
No 168
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.19 E-value=12 Score=46.50 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=5.1
Q ss_pred hhc-ccCCCCh
Q 046695 220 SMK-GAKNENP 229 (604)
Q Consensus 220 ~~~-~~~~~~~ 229 (604)
.|| |-+-+||
T Consensus 505 PCPVCGS~~HP 515 (1047)
T PRK10246 505 PCPLCGSTSHP 515 (1047)
T ss_pred CcCCCCcccCc
Confidence 467 3444554
No 169
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.15 E-value=12 Score=46.51 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 500 LESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 500 Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev 553 (604)
|..-+..+++-++++...++.+=.+.- +++..-.++...+.++...+
T Consensus 381 l~~ll~~rr~LL~~L~~~~~~~l~~l~-------~L~~~q~QL~~~~~~l~~~L 427 (1109)
T PRK10929 381 LDAQLRTQRELLNSLLSGGDTLILELT-------KLKVANSQLEDALKEVNEAT 427 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555444433333 33333444444444444333
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.08 E-value=2.3 Score=50.51 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695 346 SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl 412 (604)
+.+...|+.+.+.-..++..++...+..+.....|.++++......+.+..++..+-..+......+
T Consensus 564 ~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~L 630 (717)
T PF10168_consen 564 QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVL 630 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 3345555555555555555556556666666677777788888877777777777766665433333
No 171
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.03 E-value=4.8 Score=46.31 Aligned_cols=6 Identities=17% Similarity=0.523 Sum_probs=2.2
Q ss_pred cccccC
Q 046695 140 FDFFLG 145 (604)
Q Consensus 140 ~~~~~~ 145 (604)
|-++.|
T Consensus 24 ~~vitG 29 (563)
T TIGR00634 24 LTVLTG 29 (563)
T ss_pred eEEEEC
Confidence 333333
No 172
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=94.95 E-value=3.2 Score=47.87 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=71.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
+.++++.|.=+.+.++++..+.+.+++-.+..|.++..- ....+..++...+.++.
T Consensus 179 LmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~------------------------kv~e~~~erlqye~klk 234 (861)
T KOG1899|consen 179 LMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQS------------------------KVGEVVQERLQYETKLK 234 (861)
T ss_pred HHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH------------------------HHHHHHHHHHHHHhhcc
Confidence 555555555566666666655555555444444443311 12233344555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIK-GAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFS 577 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~-~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfs 577 (604)
....++..+++++.+.++++..+.......-. .-...-...+ -|..-+ ...+-..|+|.--|--|---
T Consensus 235 stk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~-------~lk~a~----eslm~ane~kdr~ie~lr~~ 303 (861)
T KOG1899|consen 235 STKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDN-------TLKNAL----ESLMRANEQKDRFIESLRNY 303 (861)
T ss_pred cccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHH-------HHHHHH----HHHHhhchhhhhHHHHHHHH
Confidence 55556666666666666665555444322111 1100111111 222222 13345677777777766666
Q ss_pred HHHHHhhHHHHHHHHhcC
Q 046695 578 LEHYRSGYISLRKAVIGH 595 (604)
Q Consensus 578 lehyR~~y~~L~~~~~gh 595 (604)
|..|+- .++.+-+++|-
T Consensus 304 ln~y~k-~~~iv~i~qg~ 320 (861)
T KOG1899|consen 304 LNNYDK-NAQIVRILQGE 320 (861)
T ss_pred hhhhhh-hhhhhhhhcCC
Confidence 777765 35566777775
No 173
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.84 E-value=2.2 Score=47.00 Aligned_cols=11 Identities=18% Similarity=-0.109 Sum_probs=5.2
Q ss_pred HHHHHhhHHHH
Q 046695 578 LEHYRSGYISL 588 (604)
Q Consensus 578 lehyR~~y~~L 588 (604)
+|-..+.++..
T Consensus 418 ~e~ld~~i~s~ 428 (444)
T TIGR03017 418 AELMDRRVRSA 428 (444)
T ss_pred HHHHhccCCCH
Confidence 45555544433
No 174
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.84 E-value=13 Score=45.23 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=14.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 306 SLDLDNKVKALMEELRITKEKLMLSEAEIASLKQ 339 (604)
Q Consensus 306 l~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~ 339 (604)
+...+.++..+.+..+.+...+......|+.|+.
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~ 209 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLED 209 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 175
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.74 E-value=9.9 Score=43.36 Aligned_cols=231 Identities=14% Similarity=0.223 Sum_probs=120.1
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHH
Q 046695 302 LETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQ---LAQKDIATWKSKLNSERKEVS 378 (604)
Q Consensus 302 LE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe---~~q~eie~i~~kLE~e~~ei~ 378 (604)
+..++..+.+++......+.. -.|...+.++..++..+.++ -..+..+++ .+.+....+...+.+.+....
T Consensus 253 id~~~~~L~~~l~~~~~~l~~--Leld~aeeel~~I~e~ie~l----Yd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~ 326 (570)
T COG4477 253 IDSRLERLKEQLVENSELLTQ--LELDEAEEELGLIQEKIESL----YDLLEREVEAKNVVEENLPILPDYLEKAKENNE 326 (570)
T ss_pred HHHHHHHHHHHHHHHHhHHHH--hhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 555556666666666666655 56777777777777665554 122222222 122222234444555555555
Q ss_pred HHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHH
Q 046695 379 KLQERIKSLKTSL----------SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLE 448 (604)
Q Consensus 379 ~LqeeI~eLk~ql----------q~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe 448 (604)
-|.++|..++... ...+.++.++...+.....++.. -...++-+++.++.+..-+. ..+
T Consensus 327 ~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~----~~~~yS~lq~~l~~~~~~l~-------~i~ 395 (570)
T COG4477 327 HLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEA----QEVAYSELQDNLEEIEKALT-------DIE 395 (570)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccHHHHHHHHHHHHHHHH-------HHh
Confidence 5555555554422 22244444444444444443321 22334444444444444444 444
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695 449 DELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSL--DSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHT 526 (604)
Q Consensus 449 ~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek--~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e 526 (604)
....+....+ . .++++-.+.++.+......|..+.+-. ..+=+-=.....-+.+....|..+.++|.+.....+
T Consensus 396 ~~q~~~~e~L---~-~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~ 471 (570)
T COG4477 396 DEQEKVQEHL---T-SLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINME 471 (570)
T ss_pred hhHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHH
Confidence 4444444444 2 344444444445555444444443311 111111123344567777888888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 527 ELIKGAEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 527 ~le~~l~elk~kl~ELK~rv~eLeEev 553 (604)
.+.+....+...++.+.....++-+.+
T Consensus 472 ~v~~~v~~a~~~m~~l~~~t~e~ve~a 498 (570)
T COG4477 472 AVSALVDIATEDMNTLEDETEEVVENA 498 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777777777666665554
No 176
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=12 Score=44.16 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKH--------------LQQLHMEHTELI 529 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~--------------L~qLr~E~e~le 529 (604)
.++.+|.++-+++++.+..--.|..+++........|..++..++..|.++... ++-+......++
T Consensus 465 d~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~ 544 (698)
T KOG0978|consen 465 DMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLI 544 (698)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Confidence 567777777777777777776777777766666666666666666665555544 444444444455
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh----hhHHHHHhh
Q 046695 530 KGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLC----FSLEHYRSG 584 (604)
Q Consensus 530 ~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlc----fslehyR~~ 584 (604)
+.+......+..++..+.++...++.++... +-.+.+-+=|...| -+|+|.+--
T Consensus 545 ~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~-ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 545 KELTTLTQSLEMLKKKAQEAKQSLEDLQIEL-EKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554432 23334444444433 244554433
No 177
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.60 E-value=5.8 Score=40.88 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=7.6
Q ss_pred hhhhHHHHHHHHhh
Q 046695 563 GAEEKREAIRQLCF 576 (604)
Q Consensus 563 ~aEeKreAIrQlcf 576 (604)
++.-++.-|++||.
T Consensus 142 l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 142 LARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555666664
No 178
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=94.53 E-value=6.3 Score=40.26 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046695 469 IEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHM 523 (604)
Q Consensus 469 Is~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~ 523 (604)
..-+...+..+...+.......+.+....+.+...+......+..+.+.|+.++.
T Consensus 159 ~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 159 LAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444444444444444444444444
No 179
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.48 E-value=8.9 Score=42.83 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 046695 330 SEAEIASLKQEVE 342 (604)
Q Consensus 330 se~eI~~Lk~EL~ 342 (604)
...++..++..+.
T Consensus 95 ~~~~~~~~~~~~~ 107 (457)
T TIGR01000 95 EENQKQLLEQQLD 107 (457)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 180
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.47 E-value=11 Score=43.31 Aligned_cols=19 Identities=5% Similarity=0.115 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046695 316 LMEELRITKEKLMLSEAEI 334 (604)
Q Consensus 316 L~eEL~~~~eeL~~se~eI 334 (604)
+..+.+.+...++....++
T Consensus 159 ~~~~~~~~~~~~~~~~~~L 177 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQL 177 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 181
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.46 E-value=8.5 Score=45.55 Aligned_cols=17 Identities=12% Similarity=0.352 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHHHHH
Q 046695 33 ENLEEMDQSVKRMLKLI 49 (604)
Q Consensus 33 ~~l~~~~~~~~~~l~~i 49 (604)
.-+.+++.++..+-.+-
T Consensus 101 kpi~ele~ki~el~~~~ 117 (762)
T PLN03229 101 KPLVDLEKKIVDVRKMA 117 (762)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 55777888877655543
No 182
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.40 E-value=7.3 Score=40.37 Aligned_cols=69 Identities=14% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 046695 331 EAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRD 400 (604)
Q Consensus 331 e~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~e 400 (604)
...+..+..++.++ ...++.|+.+...+......+....+....+...|...|..+...+..+-..+..
T Consensus 44 ~~~~~~~e~~l~~L-~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 44 KQQLDPLEKELESL-EQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVES 112 (264)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343333333 4455566666666655555555555555555555555555554444444444333
No 183
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.39 E-value=7.6 Score=40.61 Aligned_cols=157 Identities=22% Similarity=0.349 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHH
Q 046695 354 NQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACL 433 (604)
Q Consensus 354 ~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sL 433 (604)
..+..++.++++|+.+ ....+..|+.++..+++++....++|..|.+=.. ..| +. ....|.+|...+..+
T Consensus 63 ~~l~~ak~eLqe~eek---~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EY-Pv---K~vqIa~L~rqlq~l 132 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEK---EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD---HEY-PV---KAVQIANLVRQLQQL 132 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhh-hH---HHHHHHHHHHHHHHH
Confidence 4466666666666643 3456677778888888888777777777754111 112 11 223455544444444
Q ss_pred HHHHH----HHHHhhh----hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 046695 434 VEQLR----EWESRGR----SLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVI 505 (604)
Q Consensus 434 e~eL~----ele~~i~----sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~ 505 (604)
+.... .+..-++ ++..++.....++ ...+. ...+..+..-.-..--.-..+..++.
T Consensus 133 k~~qqdEldel~e~~~~el~~l~~~~q~k~~~i--------------l~~~~--~k~~~~~~~~l~~~~~~N~~m~kei~ 196 (258)
T PF15397_consen 133 KDSQQDELDELNEMRQMELASLSRKIQEKKEEI--------------LSSAA--EKTQSPMQPALLQRTLENQVMQKEIV 196 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH--HHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 43322 2221111 1111111111111 00000 00001111100001112235667888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 046695 506 SRDDRMDQMEKHLQQLHMEHTELIKGAEDAH 536 (604)
Q Consensus 506 s~r~~I~emE~~L~qLr~E~e~le~~l~elk 536 (604)
..++.|++++..|..|+.+.+.+.....+.+
T Consensus 197 ~~re~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 197 QFREEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 8899999999999999999998888765444
No 184
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.39 E-value=5.4 Score=38.86 Aligned_cols=118 Identities=21% Similarity=0.268 Sum_probs=62.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046695 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL 500 (604)
Q Consensus 421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L 500 (604)
+.|.+++-.+..+..++.+....+..+. ..+......+.+..+.+..+..+...+..++...
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk------------------~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~ 103 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLK------------------KKIGKTVQILTHVKEKLHFLSEELERLKQELKDR 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666665554444333 3334444444455555555555555555555555
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 501 ESDVISRDDRMDQMEKHLQQLHMEHTELIK------------GAEDAHRMVGELRLKAKELEEEIEKQ 556 (604)
Q Consensus 501 eqe~~s~r~~I~emE~~L~qLr~E~e~le~------------~l~elk~kl~ELK~rv~eLeEeve~q 556 (604)
...+...+..+..+..+...++.....+.. ++......+.+++..|..++..++..
T Consensus 104 ~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l 171 (177)
T PF13870_consen 104 EEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEIL 171 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444444444332 33444455555666666666655443
No 185
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.39 E-value=1.9 Score=39.99 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 046695 433 LVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASI---AERDKHIENLNRSLDSLKAERDRLESDVISRDD 509 (604)
Q Consensus 433 Le~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el---~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~ 509 (604)
|...++.++.++..+..++..+..+. . .+..+|..+-... ......+..|..+...++.+.+.+.+-+.++.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r---~-~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAER---D-ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33333444444444444444444444 2 2333333333333 333444555566666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 510 RMDQMEKHLQQLHMEH 525 (604)
Q Consensus 510 ~I~emE~~L~qLr~E~ 525 (604)
.++++..++.+++.=.
T Consensus 97 ~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 97 EVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776666543
No 186
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.23 E-value=11 Score=41.64 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 515 EKHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 515 E~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
..++..|+++.+-.......+-.+..+.+
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665555555555555554444
No 187
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=11 Score=42.00 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=18.5
Q ss_pred HHHHhhhHHHHHhhHHHHHHHHhc
Q 046695 571 IRQLCFSLEHYRSGYISLRKAVIG 594 (604)
Q Consensus 571 IrQlcfslehyR~~y~~L~~~~~g 594 (604)
|-|---|||..+-+|+.+|+.-.|
T Consensus 490 ~k~~l~slEkl~~Dyqairqen~~ 513 (521)
T KOG1937|consen 490 QKQYLKSLEKLHQDYQAIRQENDQ 513 (521)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445567899999999999887554
No 188
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.21 E-value=12 Score=41.94 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 315 ALMEELRITKEKLMLSEAEIASLKQEVE 342 (604)
Q Consensus 315 ~L~eEL~~~~eeL~~se~eI~~Lk~EL~ 342 (604)
.+..++..+...+..+..++.+|..++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666777777777777766543
No 189
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.20 E-value=7 Score=39.44 Aligned_cols=60 Identities=25% Similarity=0.236 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhHHHHHH---HHhhhHHHHHhhHHHHHHHH
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVIL----EGAEEKREAIR---QLCFSLEHYRSGYISLRKAV 592 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i~----~~aEeKreAIr---QlcfslehyR~~y~~L~~~~ 592 (604)
..+...+..|+..+.....+.+.|....- --.+||--.|| ||..+-=|+=..++.|.+.|
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555544444444433221 24789999996 67765444433444444433
No 190
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.03 E-value=16 Score=42.95 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 507 RDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELE 550 (604)
Q Consensus 507 ~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLe 550 (604)
.+..+.+|+..|++-++||.+.-.-+..+..+...=|.+-.++.
T Consensus 587 l~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~ 630 (739)
T PF07111_consen 587 LREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELR 630 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Confidence 45677888888888888888877777776666665554444443
No 191
>PRK10869 recombination and repair protein; Provisional
Probab=93.95 E-value=15 Score=42.35 Aligned_cols=10 Identities=30% Similarity=0.734 Sum_probs=4.1
Q ss_pred ccccccCCCC
Q 046695 139 GFDFFLGSAG 148 (604)
Q Consensus 139 ~~~~~~~~~~ 148 (604)
||-++.|--|
T Consensus 23 glnvitGetG 32 (553)
T PRK10869 23 GMTVITGETG 32 (553)
T ss_pred CcEEEECCCC
Confidence 3444444333
No 192
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=93.95 E-value=14 Score=42.10 Aligned_cols=79 Identities=13% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 475 SIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 475 el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev 553 (604)
+|.+++..+..+..+.+.=....+.|...+.++...+...++.....+....++.+.--+++..+..++.++..+...+
T Consensus 355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~m 433 (570)
T COG4477 355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYM 433 (570)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333332223334444444444444444444444444444444444444444444444444444444
No 193
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.92 E-value=14 Score=42.00 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 488 RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQR 557 (604)
Q Consensus 488 ~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk 557 (604)
.+...|...+..+.+.+.-.+-+.++|..+|......+..+++.+++++++-+|.-..+.+-++++..++
T Consensus 233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333333333334444444445555556555666666666666666666666666666666664444
No 194
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.91 E-value=21 Score=43.86 Aligned_cols=18 Identities=39% Similarity=0.333 Sum_probs=13.0
Q ss_pred hhhcHHHHHHHHHHHhhh
Q 046695 250 IHISNEEILRLKIELQKY 267 (604)
Q Consensus 250 ~~~~e~ei~~lk~ele~~ 267 (604)
+...=.||.+||..|---
T Consensus 406 lKd~~~EIerLK~dl~Aa 423 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAA 423 (1041)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555667889998887553
No 195
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.82 E-value=8.8 Score=39.22 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 538 MVGELRLKAKELEEEIEKQRVVIL 561 (604)
Q Consensus 538 kl~ELK~rv~eLeEeve~qk~~i~ 561 (604)
++..+...+..|...+-.+|..-+
T Consensus 193 ~~~~l~~~l~~Lq~~ln~~R~~ea 216 (240)
T PF12795_consen 193 RIQRLQQQLQALQNLLNQKRRQEA 216 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 196
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.62 E-value=15 Score=41.25 Aligned_cols=12 Identities=8% Similarity=0.027 Sum_probs=5.5
Q ss_pred cccccCCCCCCC
Q 046695 140 FDFFLGSAGSSA 151 (604)
Q Consensus 140 ~~~~~~~~~~~~ 151 (604)
.|+.|+.|-..+
T Consensus 194 ~esaLn~~QpqS 205 (527)
T PF15066_consen 194 KESALNPSQPQS 205 (527)
T ss_pred hhhccCCCCCcc
Confidence 344555444443
No 197
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.57 E-value=24 Score=43.39 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=10.7
Q ss_pred HHHHHHhhHHHHHHHHHh
Q 046695 232 LFARIVGYEKKLRLANEK 249 (604)
Q Consensus 232 l~~~~~~~~~el~~~n~~ 249 (604)
|-.+|..+..+|..|.+|
T Consensus 409 ~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 409 LYEEIERLKRDLAAAREK 426 (1041)
T ss_pred HHHHHHHHHHHHHHhHhh
Confidence 335666666666655555
No 198
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.36 E-value=2.6 Score=43.36 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=10.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 046695 483 IENLNRSLDSLKAERDRLESDVISRDDRM 511 (604)
Q Consensus 483 Le~L~~ek~~Le~el~~Leqe~~s~r~~I 511 (604)
|..+...+..|+..+..++.+...+...|
T Consensus 55 LrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 55 LRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 199
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.28 E-value=6.4 Score=37.28 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Q 046695 427 YEEKACLVEQLREWESRGRSLEDE 450 (604)
Q Consensus 427 qEk~~sLe~eL~ele~~i~sLe~e 450 (604)
+...+.+..+++..+.++..|.++
T Consensus 125 ~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 125 QQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455444444444443
No 200
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.27 E-value=1.1 Score=44.38 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 046695 74 VEEFYRMYRSLAERYDHVT 92 (604)
Q Consensus 74 v~~~~~~y~~laeryd~~~ 92 (604)
..++|.+|.-|++|-+.+.
T Consensus 19 ~~~li~ay~~L~d~~~~l~ 37 (194)
T PF08614_consen 19 FAELIDAYNRLADRTSLLK 37 (194)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 3468889999999887775
No 201
>PF13514 AAA_27: AAA domain
Probab=93.19 E-value=29 Score=43.28 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695 238 GYEKKLRLANEKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 238 ~~~~el~~~n~~~~~~e~ei~~lk~ele~~ 267 (604)
.+......+..+...++.++..+..+++..
T Consensus 663 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 692 (1111)
T PF13514_consen 663 ALLEEWEQAAARREQLEEELQQLEQELEEA 692 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444333334444445555555544443
No 202
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.15 E-value=12 Score=38.74 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT 389 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ 389 (604)
+...+........++-..+...+......|..+-..+..++.
T Consensus 74 ~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 74 KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344444444444444444444444444444444444444444
No 203
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=93.05 E-value=20 Score=40.96 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 046695 506 SRDDRMDQMEKHLQQLHMEHTELIKGAED 534 (604)
Q Consensus 506 s~r~~I~emE~~L~qLr~E~e~le~~l~e 534 (604)
+...+|.-|-+||..|+..+.+....++.
T Consensus 484 NYE~QLs~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 484 NYEEQLSMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444444433
No 204
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.89 E-value=24 Score=41.92 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=12.2
Q ss_pred cHHHHHHHHHHHhhh
Q 046695 253 SNEEILRLKIELQKY 267 (604)
Q Consensus 253 ~e~ei~~lk~ele~~ 267 (604)
++.++.+||+++-+-
T Consensus 434 Le~elekLk~eilKA 448 (762)
T PLN03229 434 LEGEVEKLKEQILKA 448 (762)
T ss_pred HHHHHHHHHHHHHhc
Confidence 677888888888877
No 205
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.88 E-value=2.1 Score=45.88 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRD 508 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r 508 (604)
++..++.+...+...|..|..+...+..++..++.+.....
T Consensus 51 el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 51 ELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333333
No 206
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.85 E-value=13 Score=43.69 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 046695 395 DHEVRDLKMAVSDAE 409 (604)
Q Consensus 395 eeeI~eLk~~l~d~e 409 (604)
.+.+.-|...++.++
T Consensus 111 eekn~slqerLelaE 125 (916)
T KOG0249|consen 111 EEKNRSLQERLELAE 125 (916)
T ss_pred HHhhhhhhHHHHHhh
Confidence 333333333333333
No 207
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.83 E-value=7.4 Score=35.47 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046695 477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAE 533 (604)
Q Consensus 477 ~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~ 533 (604)
+.+...+..|..+..+....+.+|...|.+.+..+..+.-+--+|+..+.+.+....
T Consensus 40 d~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka 96 (107)
T PF09304_consen 40 DQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKA 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444555555555555555555554444433222244444444444333
No 208
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.64 E-value=4.9 Score=36.62 Aligned_cols=67 Identities=21% Similarity=0.369 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHH
Q 046695 350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK 416 (604)
Q Consensus 350 eqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eK 416 (604)
..++..+..++..++.++........+...|...+..|.++...+...+.+|+..|.++...+..+|
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555666667777788888888888888888888888777775555
No 209
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.50 E-value=13 Score=37.54 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL 391 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql 391 (604)
.++.....+......+..+...+..-..++...+.++...+...
T Consensus 39 ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 39 QLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEA 82 (202)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHH
Confidence 34444445555555555444444444444444444444444333
No 210
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.42 E-value=13 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHH
Q 046695 381 QERIKSLKTSLSDRDHEVRDLK 402 (604)
Q Consensus 381 qeeI~eLk~qlq~leeeI~eLk 402 (604)
+.++..++.+.+..-.++.+++
T Consensus 564 ~~rv~~Lk~~~e~Ql~~L~~l~ 585 (717)
T PF10168_consen 564 QRRVKLLKQQKEQQLKELQELQ 585 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333333
No 211
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.42 E-value=21 Score=41.57 Aligned_cols=140 Identities=20% Similarity=0.238 Sum_probs=81.9
Q ss_pred HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046695 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSE 373 (604)
Q Consensus 294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e 373 (604)
..|+.+.+|+...+.+..++.-|.++..+-.++|+.++-=|....+.|.+ .-+.||+++=.. ...
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna----tEEmLQqellsr-----------tsL 172 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA----TEEMLQQELLSR-----------TSL 172 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch----HHHHHHHHHHhh-----------hhH
Confidence 56888889999999999999999988888778888888877766665553 345555554332 111
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 046695 374 RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRI 453 (604)
Q Consensus 374 ~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkq 453 (604)
..+-.+|-.++.+||-.+-.++.+-.+.+..+...+..+.... +.++.-+.++.-..+..+.+...++..
T Consensus 173 ETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn----------~~kv~e~~~erlqye~klkstk~e~a~ 242 (861)
T KOG1899|consen 173 ETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN----------QSKVGEVVQERLQYETKLKSTKGEMAP 242 (861)
T ss_pred HHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHhhcccccchhhh
Confidence 1222344455666666666666555555555554443332211 333444444444444444455555555
Q ss_pred HHHhh
Q 046695 454 IKTQK 458 (604)
Q Consensus 454 l~~E~ 458 (604)
+.++.
T Consensus 243 L~Eq~ 247 (861)
T KOG1899|consen 243 LREQR 247 (861)
T ss_pred HHHHH
Confidence 44444
No 212
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.40 E-value=15 Score=38.76 Aligned_cols=104 Identities=25% Similarity=0.342 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHH-------HHHHHHHHhhhh
Q 046695 377 VSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLV-------EQLREWESRGRS 446 (604)
Q Consensus 377 i~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe-------~eL~ele~~i~s 446 (604)
|.+|..++..|+.+.+-.+=.|.-|+.++....+++..++.. ++-+.+.+.+...+++ .++.-++.++..
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 444445555555555555555555555555555555444444 4444444444444444 445555555556
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 447 LEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIE 484 (604)
Q Consensus 447 Le~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le 484 (604)
++.++...+..+ + .++.+|..++.+++.......
T Consensus 100 lEgQl~s~Kkqi---e-~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 100 LEGQLNSCKKQI---E-KLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHhhc
Confidence 666666666665 4 566666666666665554443
No 213
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.38 E-value=1.9 Score=42.71 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev 553 (604)
+..++..|...+..+...|.+++..+..++.|+..+.-.++.+..++..|+..=..|-+|.
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444444444444444444444443
No 214
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.37 E-value=16 Score=38.15 Aligned_cols=8 Identities=38% Similarity=0.405 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 046695 382 ERIKSLKT 389 (604)
Q Consensus 382 eeI~eLk~ 389 (604)
.+.+.+++
T Consensus 66 t~nqrl~~ 73 (333)
T KOG1853|consen 66 TRNQRLTT 73 (333)
T ss_pred HHHHHHHH
Confidence 33333333
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.01 E-value=2.9 Score=46.45 Aligned_cols=21 Identities=33% Similarity=0.454 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046695 346 SEKIQTLQNQLQLAQKDIATW 366 (604)
Q Consensus 346 ~~kieqLq~eLe~~q~eie~i 366 (604)
..++.+++..++..++++...
T Consensus 381 e~k~~q~q~k~~k~~kel~~~ 401 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEE 401 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 216
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.96 E-value=27 Score=41.29 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=23.4
Q ss_pred hHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 292 DAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEA 332 (604)
Q Consensus 292 ~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~ 332 (604)
+++++..+.+-...+--..++.-.++..|..+..+|.++-.
T Consensus 93 ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r 133 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR 133 (916)
T ss_pred hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence 45666666666665555555666666666555555554443
No 217
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=91.79 E-value=21 Score=39.63 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHhhhhcHHHHHHHHHHHhhh
Q 046695 245 LANEKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 245 ~~n~~~~~~e~ei~~lk~ele~~ 267 (604)
.+|.-++...+||.+||++|...
T Consensus 266 qlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 266 QLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 45666778889999999999655
No 218
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=91.53 E-value=30 Score=39.53 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=54.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH
Q 046695 384 IKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE 463 (604)
Q Consensus 384 I~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~ 463 (604)
+.-+...-+-++..+..+...|.|++..|...+..+......|-.++..+..+ |...++..-+.|.++..+.
T Consensus 339 ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e---~~~~~r~~lekl~~~q~e~----- 410 (531)
T PF15450_consen 339 LDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNE---WESDERKSLEKLDQWQNEM----- 410 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-----
Confidence 33344444445555666666666666666555555555555555555555543 3333333444555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
...+..+...++.+-.+|++++..-+.++..++
T Consensus 411 --~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d 443 (531)
T PF15450_consen 411 --EKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSD 443 (531)
T ss_pred --HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Confidence 233344444444555555555555555555443
No 219
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=91.48 E-value=30 Score=39.53 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHH
Q 046695 351 TLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEK 430 (604)
Q Consensus 351 qLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~ 430 (604)
-+..++..+...+..+.+|...-..+-..|..++......++.+.+++..+...+..+++.+.--+..+..++.-+.+-+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556666666666666666666666666677777776666667777777666666666666554444556666666666
Q ss_pred HHHHHHHHHHHHhhhhH
Q 046695 431 ACLVEQLREWESRGRSL 447 (604)
Q Consensus 431 ~sLe~eL~ele~~i~sL 447 (604)
.++..+|..-..+|+.|
T Consensus 497 asmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 497 ASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666665444444433
No 220
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.46 E-value=10 Score=42.95 Aligned_cols=99 Identities=22% Similarity=0.297 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 046695 434 VEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQ 513 (604)
Q Consensus 434 e~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~e 513 (604)
.+++++...+..++...|.+...++ . ....+++.|...|.++.+.+..+--+++.+..-+.... ..=.+
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el---~-~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~-------da~~q 272 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKEL---S-RQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK-------DAQRQ 272 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hhHHH
Confidence 3444444444444444444444443 2 33344455555555544444444444333333222221 12223
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 514 MEKHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 514 mE~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
+..++++++....++.+.+++++..+..|+
T Consensus 273 l~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444444444444444
No 221
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.35 E-value=27 Score=38.79 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=14.8
Q ss_pred hHHHHHHhhhHHHHHHHHhhhhhh
Q 046695 189 QGLQRKVNELETELREAKEKLHSQ 212 (604)
Q Consensus 189 ~~l~~~~~~le~e~~~~~~k~~~~ 212 (604)
..|..||.-|..+..-.+..|+.+
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~ 69 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETL 69 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhh
Confidence 367777777776665555555444
No 222
>PF13166 AAA_13: AAA domain
Probab=91.35 E-value=35 Score=40.02 Aligned_cols=19 Identities=21% Similarity=0.601 Sum_probs=9.3
Q ss_pred HHHHHHhhhHHHHHHHHhh
Q 046695 190 GLQRKVNELETELREAKEK 208 (604)
Q Consensus 190 ~l~~~~~~le~e~~~~~~k 208 (604)
.+..+|.+++.++.....+
T Consensus 93 ~~~~~I~~l~~~l~~~~~~ 111 (712)
T PF13166_consen 93 EIEKEIEELKEELKKLEKE 111 (712)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444333
No 223
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.32 E-value=36 Score=40.15 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=14.9
Q ss_pred HHHHHhhhHHHHHhhHHHHHHHH
Q 046695 570 AIRQLCFSLEHYRSGYISLRKAV 592 (604)
Q Consensus 570 AIrQlcfslehyR~~y~~L~~~~ 592 (604)
|+||+.-..---....++++.+-
T Consensus 611 sLRQ~qrqa~reKer~~E~~~lq 633 (739)
T PF07111_consen 611 SLRQIQRQAAREKERNQELRRLQ 633 (739)
T ss_pred HHHHHHHHHHHhhchhHHHHHHH
Confidence 57777766666666666666543
No 224
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.92 E-value=4.1 Score=46.91 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 431 ACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 431 ~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
..+..++..+..+++.++.+++.++..+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ 445 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKREL 445 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 225
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.89 E-value=2.3 Score=43.42 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
.++....+.+..|+.+.+++..+-.++..++.++...+..+++++....+|......+......++++..+|.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 4455555666667777777777777777777777777777777777777766666655554444444444443
No 226
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.84 E-value=32 Score=38.73 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=16.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhH
Q 046695 481 KHIENLNRSLDSLKAERDRLESDVISR 507 (604)
Q Consensus 481 ~~Le~L~~ek~~Le~el~~Leqe~~s~ 507 (604)
..|..|.+++...+.++-.|..++..+
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665555443
No 227
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.73 E-value=0.45 Score=51.00 Aligned_cols=94 Identities=17% Similarity=0.297 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
.+..+|..+...+.+....|..|......++..+..+...+..+-..+......|..|+.....+...+.+++-.|+-..
T Consensus 60 dLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~a 139 (326)
T PF04582_consen 60 DLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQA 139 (326)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 44555566666666677777777777777888888888888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 046695 544 LKAKELEEEIEKQR 557 (604)
Q Consensus 544 ~rv~eLeEeve~qk 557 (604)
..+.+|+.||..+-
T Consensus 140 L~ItdLe~RV~~LE 153 (326)
T PF04582_consen 140 LNITDLESRVKALE 153 (326)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHhhHHHHHHHHh
Confidence 99999999885543
No 228
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.62 E-value=24 Score=36.85 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 046695 378 SKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQ 457 (604)
Q Consensus 378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E 457 (604)
+.|..++..++++..+++.+..-|+..+....+++.. ...+.-..+..|+.++......+..+...|+.+++.
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~-------q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED-------QRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666666665555444432 222222234455555555555555555555555555
Q ss_pred h
Q 046695 458 K 458 (604)
Q Consensus 458 ~ 458 (604)
.
T Consensus 121 N 121 (333)
T KOG1853|consen 121 N 121 (333)
T ss_pred c
Confidence 4
No 229
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.52 E-value=3.4 Score=47.54 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695 382 ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIK 455 (604)
Q Consensus 382 eeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~ 455 (604)
.++..|+..+..++.+|..|+..+..+..... .+...+-++..+.+++..|+.+|.+....+..|+.++.++.
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444333332 12235667777888888888888888888888887777766
No 230
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.37 E-value=21 Score=35.77 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 328 MLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK 369 (604)
Q Consensus 328 ~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~k 369 (604)
+..+..+..++..+... -.....++.++..+...+..|..+
T Consensus 33 rd~e~~l~~a~~~~a~~-~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 33 RDMEEQLRKARQALARV-MANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333 333444555555555555555433
No 231
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.15 E-value=5.9 Score=42.37 Aligned_cols=85 Identities=28% Similarity=0.352 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695 473 KASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEE 552 (604)
Q Consensus 473 k~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEe 552 (604)
+..+.++++.+....-.-..|.++...|.-++..+...+.+++..+.++++++.+-...+...+.....|+..+..|.+.
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334455555555566666666666666666666666555555666666666666666666666
Q ss_pred HHHHH
Q 046695 553 IEKQR 557 (604)
Q Consensus 553 ve~qk 557 (604)
|....
T Consensus 163 L~~rd 167 (302)
T PF09738_consen 163 LKQRD 167 (302)
T ss_pred HHHHH
Confidence 64433
No 232
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=90.08 E-value=20 Score=35.00 Aligned_cols=137 Identities=18% Similarity=0.173 Sum_probs=82.3
Q ss_pred hhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 410 QKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRS 489 (604)
Q Consensus 410 ekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~e 489 (604)
++++..-...+.+...+..++.-++.++...=.....|+..-+....++++.+ +..-.-.+.++...|.+
T Consensus 16 ~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS----------~~f~~ysE~dik~AYe~ 85 (159)
T PF05384_consen 16 EQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVS----------RNFDRYSEEDIKEAYEE 85 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhcccCHHHHHHHHHH
Confidence 33444343444444444444444444444444444444444444444442222 11111224456666777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 490 LDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ 556 (604)
Q Consensus 490 k~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~q 556 (604)
...+.-.+..+.++-..++..-.+++..|..+..=.+..+.....+...++=|...+..+...++..
T Consensus 86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777777777777777777788888888888888777777777777777777777777777766543
No 233
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.05 E-value=21 Score=37.01 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=11.0
Q ss_pred HHHHhhHHHHHHHHhcCC
Q 046695 579 EHYRSGYISLRKAVIGHK 596 (604)
Q Consensus 579 ehyR~~y~~L~~~~~gh~ 596 (604)
-+=|+-|+.||++=+|.+
T Consensus 219 ~~g~~ky~tl~~i~~g~t 236 (246)
T PF00769_consen 219 RAGRDKYKTLRQIRQGNT 236 (246)
T ss_dssp HTT--HHHHHHHHT-S-H
T ss_pred HhchhHHHHHHHHhcCCH
Confidence 345777999999999973
No 234
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.56 E-value=4.5 Score=34.00 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQR 557 (604)
Q Consensus 492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk 557 (604)
.|+..+..|...+.....++...+..++.|+.++......++.+.....+|+..+..|.++++..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666677777777777777788888888999999999999999999999999999988865543
No 235
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=89.16 E-value=11 Score=33.55 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~ 547 (604)
....+...+......+..+...+..+..++....+.|......+..+..+++-|+....+-...+..+...-..+..++.
T Consensus 11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~ 90 (96)
T PF08647_consen 11 AFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLK 90 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555566666667777777777777777777777777777666666555555555555666666
Q ss_pred HHHH
Q 046695 548 ELEE 551 (604)
Q Consensus 548 eLeE 551 (604)
+++.
T Consensus 91 ~~Ek 94 (96)
T PF08647_consen 91 NLEK 94 (96)
T ss_pred Hhhc
Confidence 5554
No 236
>PRK10869 recombination and repair protein; Provisional
Probab=89.08 E-value=49 Score=38.21 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
.++..+..=.+..+.-++++...++.+..++.
T Consensus 303 ~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~ 334 (553)
T PRK10869 303 QRLSKQISLARKHHVSPEELPQHHQQLLEEQQ 334 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444443
No 237
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.03 E-value=16 Score=40.10 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=9.1
Q ss_pred cHHHHHHHHHHHhhhccc
Q 046695 253 SNEEILRLKIELQKYNSS 270 (604)
Q Consensus 253 ~e~ei~~lk~ele~~~~~ 270 (604)
+....+--|.|+|.|.|.
T Consensus 189 s~vd~~eWklEvERV~Pq 206 (359)
T PF10498_consen 189 SKVDPAEWKLEVERVLPQ 206 (359)
T ss_pred ccCCHHHHHHHHHHHhhh
Confidence 333445556666666433
No 238
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=50 Score=38.02 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=20.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDE 450 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~e 450 (604)
..++.-++.+-....+++......++-+++..
T Consensus 440 aqaevdrlLeilkeveneKnDkdkkiaeler~ 471 (654)
T KOG4809|consen 440 AQAEVDRLLEILKEVENEKNDKDKKIAELERH 471 (654)
T ss_pred HHHHHHHHHHHHHHHHhhhccccchhhhcCch
Confidence 45566666666666666666666666666633
No 239
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.86 E-value=30 Score=35.49 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 322 ITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK 369 (604)
Q Consensus 322 ~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~k 369 (604)
.+..-|+..+..+..+...+..+ -...+.++.++..++.+.+.|..+
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~-~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQA-IARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555 456777777777777777777644
No 240
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.70 E-value=45 Score=37.29 Aligned_cols=24 Identities=29% Similarity=0.131 Sum_probs=13.2
Q ss_pred HHHHHhhhHHHHHh--hHHHHHHHHh
Q 046695 570 AIRQLCFSLEHYRS--GYISLRKAVI 593 (604)
Q Consensus 570 AIrQlcfslehyR~--~y~~L~~~~~ 593 (604)
|.--+-|||-|==+ --.+|-|||+
T Consensus 446 a~~~~~~Slaaeid~~sqdeLmqafq 471 (502)
T KOG0982|consen 446 ATFSLFFSLAAEIDEMSQDELMQAFQ 471 (502)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445566666444 3445666665
No 241
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.60 E-value=15 Score=40.28 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=13.6
Q ss_pred ChhhhhhhhchHHHHhhhhccC
Q 046695 282 SPAEINVNMWDAELQEGINGLE 303 (604)
Q Consensus 282 ~~~e~~~~~~~~~Lq~~I~eLE 303 (604)
++..|+.+-|-++++-+.-.|+
T Consensus 187 ~es~vd~~eWklEvERV~PqLK 208 (359)
T PF10498_consen 187 IESKVDPAEWKLEVERVLPQLK 208 (359)
T ss_pred ccccCCHHHHHHHHHHHhhhhe
Confidence 4455566667777776665554
No 242
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.55 E-value=22 Score=33.58 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=3.4
Q ss_pred HHHHHHhh
Q 046695 259 RLKIELQK 266 (604)
Q Consensus 259 ~lk~ele~ 266 (604)
-+..+|..
T Consensus 6 yiN~~L~s 13 (151)
T PF11559_consen 6 YINQQLLS 13 (151)
T ss_pred HHHHHHHH
Confidence 34444443
No 243
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.24 E-value=3.8 Score=41.87 Aligned_cols=47 Identities=23% Similarity=0.353 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQ 513 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~e 513 (604)
.+...+..++.+..+.|+.|..+...+++.+..+..+++.++....+
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 244
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=87.25 E-value=0.93 Score=49.55 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 046695 506 SRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEE 566 (604)
Q Consensus 506 s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEe 566 (604)
++...|.+++..|..+......+.+.+......+..+..++..|+.+..+.++.|.+.-|+
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg 201 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG 201 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence 3455666666666666666666666666677777888889999999999999999988776
No 245
>PF13166 AAA_13: AAA domain
Probab=87.04 E-value=70 Score=37.57 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=18.2
Q ss_pred hHHHHHHhhhHHHHHHHHhhhhhhhhh
Q 046695 189 QGLQRKVNELETELREAKEKLHSQEER 215 (604)
Q Consensus 189 ~~l~~~~~~le~e~~~~~~k~~~~~e~ 215 (604)
+.|...-++++.++.+++.++......
T Consensus 85 ~~Lge~~~~~~~~I~~l~~~l~~~~~~ 111 (712)
T PF13166_consen 85 FTLGEENIEIEKEIEELKEELKKLEKE 111 (712)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777777766443
No 246
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=87.02 E-value=74 Score=37.83 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046695 478 ERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDA 535 (604)
Q Consensus 478 e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~el 535 (604)
.....+..+.........++..|...+..++.....++.....+..+.+.+-......
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555555555444444333
No 247
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.48 E-value=46 Score=34.95 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=10.4
Q ss_pred HHHhhhhHHHHHHHHHHhh
Q 046695 440 WESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 440 le~~i~sLe~eIkql~~E~ 458 (604)
+..+|..|..+|.++....
T Consensus 118 K~vqIa~L~rqlq~lk~~q 136 (258)
T PF15397_consen 118 KAVQIANLVRQLQQLKDSQ 136 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345556666666655544
No 248
>PRK09343 prefoldin subunit beta; Provisional
Probab=86.23 E-value=13 Score=34.46 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 046695 425 GLYEEKACLVEQLREWESRGRSLEDELRI 453 (604)
Q Consensus 425 ~LqEk~~sLe~eL~ele~~i~sLe~eIkq 453 (604)
.+......+..++.-+..+++.++.++..
T Consensus 11 ~~~~~~q~lq~~l~~~~~q~~~le~q~~e 39 (121)
T PRK09343 11 AQLAQLQQLQQQLERLLQQKSQIDLELRE 39 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333333333333333
No 249
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.15 E-value=44 Score=34.36 Aligned_cols=56 Identities=13% Similarity=0.256 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHH
Q 046695 361 KDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK 416 (604)
Q Consensus 361 ~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eK 416 (604)
.++..+..........+..+.+.+..++.++..++..|.++++....+.......+
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~ak 147 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAK 147 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555555555555444444433333333
No 250
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.12 E-value=36 Score=35.97 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 475 SIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 475 el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
++..+......|....+.++...+.|..++..+...+.-++.+|+.-+..++.+++
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444455555555555555555555555555555554444443
No 251
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.06 E-value=9.7 Score=36.81 Aligned_cols=52 Identities=25% Similarity=0.264 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHhhhHHHHHhh
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVIL-EGAEEKREAIRQLCFSLEHYRSG 584 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i~-~~aEeKreAIrQlcfslehyR~~ 584 (604)
.++...+.+|+..+..|+.+++..+.... -.++++-.+.+..=++..+||.+
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKR 164 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777766554222 23566666666666655555543
No 252
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.04 E-value=41 Score=33.99 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 329 LSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK 369 (604)
Q Consensus 329 ~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~k 369 (604)
..+..+...+..+..+ -...+.+..++......++.|..+
T Consensus 35 em~~~l~~ar~~lA~~-~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 35 EMEDTLVEVRTTSART-IADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555544444 345566666666666666666544
No 253
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=85.69 E-value=37 Score=33.12 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIK 455 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~ 455 (604)
+...+.-++++-..|+..-..++.++..+..-|....
T Consensus 89 lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE 125 (159)
T PF05384_consen 89 LQVRLAMLREREKQLRERRDELERRLRNLEETIERAE 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666777777666666666655555433
No 254
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.62 E-value=11 Score=38.14 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046695 311 NKVKALMEELRITKEKLMLSE 331 (604)
Q Consensus 311 ~kl~~L~eEL~~~~eeL~~se 331 (604)
..+..++.++..+..+|.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333
No 255
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.54 E-value=67 Score=35.98 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=2.8
Q ss_pred cccCCC
Q 046695 103 LQSQGS 108 (604)
Q Consensus 103 ~~~~~~ 108 (604)
++.|||
T Consensus 18 ~rLqGs 23 (502)
T KOG0982|consen 18 MRLQGS 23 (502)
T ss_pred cccCCC
Confidence 334455
No 256
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.53 E-value=47 Score=34.16 Aligned_cols=55 Identities=22% Similarity=0.420 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLH 522 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr 522 (604)
.|.++.++...+...+..+.++.+.++.....+...+.+....+.+++.++.++.
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444444444444444444433333
No 257
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.08 E-value=54 Score=34.46 Aligned_cols=186 Identities=14% Similarity=0.184 Sum_probs=96.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHH-----HHHhHHHHHHHHHH
Q 046695 361 KDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKA-----EILGLYEEKACLVE 435 (604)
Q Consensus 361 ~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~-----ei~~LqEk~~sLe~ 435 (604)
..|..++..-............+-+.+--++...+.++.++..++.++..+..+...+++. .|+-++.+ |+.
T Consensus 108 d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~r---lK~ 184 (330)
T KOG2991|consen 108 DDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLR---LKG 184 (330)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHH---HHH
Confidence 3444444444444444444445555566666667777777777777777777665555333 33334333 444
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Q 046695 436 QLREWESRGRSLEDELRIIKTQKTELEE--------RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISR 507 (604)
Q Consensus 436 eL~ele~~i~sLe~eIkql~~E~~e~e~--------~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~ 507 (604)
++. ....+|++.+.+++.-.| .+=..|-.|.++-.+++... -+..+..|.-++..-+..-.+.
T Consensus 185 ele-------~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~--s~Gria~Le~eLAmQKs~seEl 255 (330)
T KOG2991|consen 185 ELE-------QTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQA--SEGRIAELEIELAMQKSQSEEL 255 (330)
T ss_pred HHH-------HHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhh--hcccHHHHHHHHHHHHhhHHHH
Confidence 444 344445555554432222 34455666666655555442 2234444444554444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 508 DDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRV 558 (604)
Q Consensus 508 r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~ 558 (604)
+..-.++.+.|.+|-...+.+..-+=-+..++.+.+-++.-|++.++-+..
T Consensus 256 kssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 256 KSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444445555555555444444444333
No 258
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=84.24 E-value=81 Score=35.83 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695 496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHT 526 (604)
Q Consensus 496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e 526 (604)
.+..+++.+.+.+-.+.++-..+...+.++-
T Consensus 552 s~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~ 582 (622)
T COG5185 552 SILDAEQLVQSTEIKLDELKVDLNRKRYKIH 582 (622)
T ss_pred hHhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666655555443
No 259
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.09 E-value=64 Score=34.53 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=50.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE 501 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le 501 (604)
.+..|..+.-..+..|++..--+.++...+.+.+.++.+++-....+-.+... ....=+.+......++.+--.|.
T Consensus 159 K~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k----~~~Kqes~eERL~QlqsEN~LLr 234 (305)
T PF14915_consen 159 KFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNK----YIGKQESLEERLSQLQSENMLLR 234 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555556677777777777775555222222222222 22223344445555555555566
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 046695 502 SDVISRDDRMDQMEKHLQQLHME 524 (604)
Q Consensus 502 qe~~s~r~~I~emE~~L~qLr~E 524 (604)
+++....+.....++-+...+..
T Consensus 235 QQLddA~~K~~~kek~ViniQ~~ 257 (305)
T PF14915_consen 235 QQLDDAHNKADNKEKTVINIQDQ 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 66666655555555544444433
No 260
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.84 E-value=1e+02 Score=36.59 Aligned_cols=102 Identities=13% Similarity=0.192 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhh
Q 046695 488 RSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTE-LIKGAEDAHRMVGELRL--KAKELEEEIEKQRVVILEGA 564 (604)
Q Consensus 488 ~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~-le~~l~elk~kl~ELK~--rv~eLeEeve~qk~~i~~~a 564 (604)
.+.+.+...+..|..++..+.+.+.++...|..+...+.- ...-+..++..+...-. ...-..+.+.++..+|-.++
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence 5667777777888888888888887777777776665410 00000111111111110 01122344455555555555
Q ss_pred hhHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 046695 565 EEKREAIRQLCFSLEHYRSGYISLRKAVI 593 (604)
Q Consensus 565 EeKreAIrQlcfslehyR~~y~~L~~~~~ 593 (604)
++|-.=+ -.|.+||.-...||..+.
T Consensus 240 ~~k~qr~----~kl~~l~~~~~~LWn~l~ 264 (660)
T KOG4302|consen 240 EEKKQRL----QKLQDLRTKLLELWNLLD 264 (660)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 5553222 238888888888887663
No 261
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.82 E-value=1.2e+02 Score=37.60 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=12.8
Q ss_pred HHHHhhhhcHHHHHHHHHHHhhh
Q 046695 245 LANEKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 245 ~~n~~~~~~e~ei~~lk~ele~~ 267 (604)
.+.++......++..|..++..+
T Consensus 184 ~~~~~~~~~~~~~~~l~~~~~~~ 206 (1042)
T TIGR00618 184 MEFAKKKSLHGKAELLTLRSQLL 206 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 44444455566666666666443
No 262
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=83.58 E-value=76 Score=34.97 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=17.3
Q ss_pred HHHHhhhhcHHHHHHHHHHHhhh
Q 046695 245 LANEKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 245 ~~n~~~~~~e~ei~~lk~ele~~ 267 (604)
..|.+|..+=.+|...|.+|+..
T Consensus 43 ~~~~~L~~Ri~di~~wk~eL~~~ 65 (384)
T PF03148_consen 43 DSNKRLRQRIRDIRFWKNELERE 65 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777888888888776
No 263
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=83.47 E-value=2.2 Score=45.79 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 046695 430 KACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDD 509 (604)
Q Consensus 430 ~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~ 509 (604)
+..+...+......+..+...|..++..+ . .+...|..+...+......|-.|......+.-.+..|+.++-...-
T Consensus 65 L~~l~~sl~~~~s~L~sLsstV~~lq~Sl---~-~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL 140 (326)
T PF04582_consen 65 LQDLASSLADMTSELNSLSSTVTSLQSSL---S-SLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQAL 140 (326)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 34444444444444444555555555444 3 3445555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHH
Q 046695 510 RMDQMEKHLQQL 521 (604)
Q Consensus 510 ~I~emE~~L~qL 521 (604)
.|..++..++.|
T Consensus 141 ~ItdLe~RV~~L 152 (326)
T PF04582_consen 141 NITDLESRVKAL 152 (326)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHhhHHHHHHHH
Confidence 555555554443
No 264
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.86 E-value=60 Score=33.40 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Q 046695 447 LEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRD 508 (604)
Q Consensus 447 Le~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r 508 (604)
...++.++..+. . .+..+|..+..+++.+......+.+.....+.++..|.+++.+..
T Consensus 40 sQ~~id~~~~e~---~-~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 40 SQKRIDQWDDEK---Q-ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 2 344444444444444444444444444444444444444333333
No 265
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.80 E-value=14 Score=37.42 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046695 348 KIQTLQNQLQLAQKDIATW 366 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i 366 (604)
++..++.++..++.+++.+
T Consensus 94 rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 266
>PLN02939 transferase, transferring glycosyl groups
Probab=82.51 E-value=1.4e+02 Score=37.13 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=21.0
Q ss_pred HHHHHHHHhhHHHHHHHHHh----------hhhcHHHHHHHHHHHhh
Q 046695 230 EALFARIVGYEKKLRLANEK----------IHISNEEILRLKIELQK 266 (604)
Q Consensus 230 ~~l~~~~~~~~~el~~~n~~----------~~~~e~ei~~lk~ele~ 266 (604)
++|+.+|+-++-.|..+..+ .+..++++.+|..+|-.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLI 212 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhc
Confidence 56677777777666654333 34445555555555544
No 267
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.42 E-value=22 Score=34.33 Aligned_cols=64 Identities=31% Similarity=0.395 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNR 488 (604)
Q Consensus 423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ 488 (604)
+..+...+..|+.++..+...+..+..++..+....... ++...|.++..++..+...|..|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~--el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE--ELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444445555555555555222 3566666777776666666666654
No 268
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.38 E-value=35 Score=38.33 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh
Q 046695 433 LVEQLREWESRGRSLEDELRIIKTQ 457 (604)
Q Consensus 433 Le~eL~ele~~i~sLe~eIkql~~E 457 (604)
+...+..++..|+.|+++++.+-.-
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhee
Confidence 3333333344444444444444333
No 269
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=82.11 E-value=45 Score=37.06 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=29.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695 362 DIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 362 eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl 412 (604)
++.-+...|++++-+...|+++++++..-. ++||..|++.+.+.++++
T Consensus 245 e~~~~~~~LqEEr~R~erLEeqlNd~~elH---q~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 245 EYQFILEALQEERYRYERLEEQLNDLTELH---QNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHH
Confidence 344555666667666666666666555432 556777777777666554
No 270
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.04 E-value=96 Score=35.06 Aligned_cols=64 Identities=14% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhh----HHHHHhh
Q 046695 509 DRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFS----LEHYRSG 584 (604)
Q Consensus 509 ~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfs----lehyR~~ 584 (604)
..|.++...++..+..+.++.....++ +.+.+.+-+.+-++=.+ +-+|-|- =+|||-.
T Consensus 389 qrikEi~gniRKq~~DI~Kil~etreL-------qkq~ns~se~L~Rsfav-----------tdellf~sakhddhvR~a 450 (521)
T KOG1937|consen 389 QRIKEIDGNIRKQEQDIVKILEETREL-------QKQENSESEALNRSFAV-----------TDELLFMSAKHDDHVRLA 450 (521)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHH-----------HHHHHHHHhccCHHHHHH
Confidence 345555555555555555555554433 33333444444333333 3345443 3788988
Q ss_pred HHHHHH
Q 046695 585 YISLRK 590 (604)
Q Consensus 585 y~~L~~ 590 (604)
|+.|-+
T Consensus 451 ykllt~ 456 (521)
T KOG1937|consen 451 YKLLTR 456 (521)
T ss_pred HHHHHH
Confidence 888744
No 271
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=81.95 E-value=57 Score=32.36 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=47.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046695 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSL 490 (604)
Q Consensus 421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek 490 (604)
.+.+.+-.++..|..++..+...++.++.+|+.+..-+. .+ ++++.|..|+.+.+...+.|..+.+-.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-~e-emQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-TE-EMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566666666666667677777778888887777772 22 477888888888888888877766533
No 272
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=81.68 E-value=70 Score=33.23 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----------HHHHHHHHHHHHHHhhhhhH
Q 046695 325 EKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSER----------KEVSKLQERIKSLKTSLSDR 394 (604)
Q Consensus 325 eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~----------~ei~~LqeeI~eLk~qlq~l 394 (604)
+.|..+-.+||.|..+|... ...+..-+......|..+..+|..-. .....++.++.......+.+
T Consensus 14 e~LN~atd~IN~lE~~L~~a----r~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA 89 (239)
T PF05276_consen 14 EKLNQATDEINRLENELDEA----RATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERA 89 (239)
T ss_pred HHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887654 34555556666666666666666433 23344455555555555555
Q ss_pred HHHHHHHHHHHHHHHhhhch
Q 046695 395 DHEVRDLKMAVSDAEQKIFP 414 (604)
Q Consensus 395 eeeI~eLk~~l~d~eekls~ 414 (604)
..-....++.|..+++.+..
T Consensus 90 ~~~h~aAKe~v~laEq~l~~ 109 (239)
T PF05276_consen 90 NSMHAAAKEMVALAEQSLMS 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55555566666666655543
No 273
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=81.41 E-value=35 Score=40.64 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHHHH
Q 046695 532 AEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAV 592 (604)
Q Consensus 532 l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~~~ 592 (604)
+..-+=.+..++.++..|..++...+..+.....- --.+++|---.+-.|.-|..|.+-+
T Consensus 334 ~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~-e~~~~~L~R~~~~~~~lY~~lL~r~ 393 (726)
T PRK09841 334 YKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPST-QQEVLRLSRDVEAGRAVYLQLLNRQ 393 (726)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444555555555555555554433 3356667777788888887766544
No 274
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=81.11 E-value=92 Score=34.23 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=21.1
Q ss_pred CCchHHHHHHhhhHHHHHHHHhhhhhh
Q 046695 186 GDDQGLQRKVNELETELREAKEKLHSQ 212 (604)
Q Consensus 186 ~~~~~l~~~~~~le~e~~~~~~k~~~~ 212 (604)
|..+.+-+|..-|..|+.|+++.+...
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888877655
No 275
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.87 E-value=20 Score=30.41 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 477 ~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
++.+..|..|..+=..|......+..-+..+|..+.+.+..+..+...+.....
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444443333444444444444444444444444444444444433333
No 276
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=80.83 E-value=62 Score=33.68 Aligned_cols=13 Identities=15% Similarity=0.384 Sum_probs=7.4
Q ss_pred HHHHHhhhhhHHH
Q 046695 384 IKSLKTSLSDRDH 396 (604)
Q Consensus 384 I~eLk~qlq~lee 396 (604)
|+.+..++.+.++
T Consensus 80 iNkWs~el~~Qe~ 92 (254)
T KOG2196|consen 80 INKWSLELEEQER 92 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 4666666655443
No 277
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=80.80 E-value=1.1e+02 Score=35.06 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=50.9
Q ss_pred hhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 288 VNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVES 343 (604)
Q Consensus 288 ~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~s 343 (604)
.+-|++.|+..+..+.+....+....-.|..+|..+...++....++..|.+++..
T Consensus 18 l~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~ 73 (531)
T PF15450_consen 18 LEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQ 73 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45699999999999999999999999999999999999999999999999998753
No 278
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.58 E-value=1.4e+02 Score=35.97 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHH
Q 046695 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEV-ESNRSEKIQTLQNQLQLAQKDIA 364 (604)
Q Consensus 294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL-~sl~~~kieqLq~eLe~~q~eie 364 (604)
.+...-++++..+......-..+..++..+++.+.-+.+-|..+.--. +++ ..+++.+..+|..++....
T Consensus 840 ~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L-~dRveE~~E~L~~a~e~~~ 910 (1480)
T COG3096 840 QLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESL-ADRVEEIRERLDEAQEAAR 910 (1480)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhH-HHHHHHHHHHHHHHHHHHH
Confidence 444444455555555544444555566666666666666666554322 233 4567777777777664433
No 279
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.41 E-value=77 Score=32.87 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 522 HMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQR 557 (604)
Q Consensus 522 r~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk 557 (604)
..++..|...+..+...+..|...+..-+.+....+
T Consensus 74 ~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq 109 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQ 109 (246)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444443333
No 280
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.00 E-value=52 Score=30.70 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=10.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHMEHT 526 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e 526 (604)
.|+........+|+.++++...++.+.+
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444333333333
No 281
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.27 E-value=37 Score=36.44 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHH
Q 046695 397 EVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLR 438 (604)
Q Consensus 397 eI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ 438 (604)
-+.+|+..+.+.+++|.-+. +..++|=|++++|.-+..
T Consensus 78 s~r~lk~~l~evEekyrkAM----v~naQLDNek~~l~yqvd 115 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAM----VSNAQLDNEKSALMYQVD 115 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHH----HHHhhhchHHHHHHHHHH
Confidence 45666666666666664432 334444444444444433
No 282
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.11 E-value=71 Score=33.74 Aligned_cols=68 Identities=16% Similarity=0.328 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 046695 432 CLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESD 503 (604)
Q Consensus 432 sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe 503 (604)
+++.-+.....++..+...+..+...- . .++..|..-+.+++...+.|..|.+=+.+..++...++.+
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de---~-~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDE---A-NLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334444444444445555555554443 2 5777888888888888888888877555444444444433
No 283
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=78.80 E-value=67 Score=33.96 Aligned_cols=56 Identities=30% Similarity=0.455 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 475 SIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 475 el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
+.+..++.|.....+...+.+++...++++...+.+|.++..+|.++..+...+..
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555555555554444443
No 284
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.79 E-value=43 Score=31.51 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 512 DQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELE 550 (604)
Q Consensus 512 ~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLe 550 (604)
+.+.+++..++.....+..+++.++..+..|..++..|+
T Consensus 85 ~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 85 KQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333334444444444444444443
No 285
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=78.46 E-value=58 Score=30.36 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 046695 432 CLVEQLR 438 (604)
Q Consensus 432 sLe~eL~ 438 (604)
.++.++.
T Consensus 17 ~l~~~~~ 23 (140)
T PRK03947 17 ALQAQIE 23 (140)
T ss_pred HHHHHHH
Confidence 3333333
No 286
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.28 E-value=61 Score=30.50 Aligned_cols=58 Identities=14% Similarity=0.274 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695 352 LQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409 (604)
Q Consensus 352 Lq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e 409 (604)
|.++|+.+...++....-.+.++.++..++..+..+...+.....-|..|+..+..++
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444455555555555555555555555555555554433
No 287
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.23 E-value=20 Score=30.10 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 046695 330 SEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTS 390 (604)
Q Consensus 330 se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~q 390 (604)
++..|..|++.+..+ ..++...+..+..+..+.+.+..++.....++.+|..++..+..+
T Consensus 3 Lea~~~~Lr~rLd~~-~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSL-TRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444 444555555555555555555545555444444444444444443
No 288
>PRK09343 prefoldin subunit beta; Provisional
Probab=77.97 E-value=52 Score=30.39 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 427 YEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 427 qEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
.+-+..++.++.+++.+|..++.+...+...+
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444444444444444
No 289
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=77.15 E-value=1.3e+02 Score=33.66 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHL 518 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L 518 (604)
....+.+|+.++...+.-.+++=...
T Consensus 371 ~~~~l~~L~Re~~~~r~~ye~lL~r~ 396 (458)
T COG3206 371 LQVQLRELEREAEAARSLYETLLQRY 396 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445444444444443333
No 290
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=76.90 E-value=78 Score=30.98 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q 046695 451 LRIIKTQK 458 (604)
Q Consensus 451 Ikql~~E~ 458 (604)
|..+..++
T Consensus 140 i~~lr~~i 147 (177)
T PF07798_consen 140 IANLRTEI 147 (177)
T ss_pred HHHHHHHH
Confidence 33344444
No 291
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.62 E-value=95 Score=32.06 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 046695 325 EKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMA 404 (604)
Q Consensus 325 eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~ 404 (604)
+.+...-..+...+.+...+ ...+.+.+.++....+.+..=....-.+.+++..++.++..+...++.+..++.++++-
T Consensus 44 nS~~efar~lS~~~~e~e~l-~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~kei 122 (246)
T KOG4657|consen 44 NSLVEFARALSQSQVELENL-KADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEI 122 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33333333444445544444 44455555555555555555555556666777777888888888888888888777777
Q ss_pred HHHHHhhh
Q 046695 405 VSDAEQKI 412 (604)
Q Consensus 405 l~d~eekl 412 (604)
++...+.+
T Consensus 123 Is~kr~~~ 130 (246)
T KOG4657|consen 123 ISQKRQAL 130 (246)
T ss_pred HHHHHHHH
Confidence 77655433
No 292
>PLN02939 transferase, transferring glycosyl groups
Probab=76.41 E-value=2.1e+02 Score=35.64 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH
Q 046695 428 EEKACLVEQLREWESRGRSLEDELRI 453 (604)
Q Consensus 428 Ek~~sLe~eL~ele~~i~sLe~eIkq 453 (604)
+.+-.|+++-..++.-++.|+.++--
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (977)
T PLN02939 257 ERVFKLEKERSLLDASLRELESKFIV 282 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444433
No 293
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.27 E-value=92 Score=31.50 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Q 046695 377 VSKLQERIKSLKTSLSDRDHEVRDL 401 (604)
Q Consensus 377 i~~LqeeI~eLk~qlq~leeeI~eL 401 (604)
++.+-..-..++.++......+.++
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~ 71 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADW 71 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444
No 294
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=75.59 E-value=80 Score=35.27 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 430 KACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 430 ~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
-.++...+..++..++.|+.+..++.++.
T Consensus 43 ~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555554444
No 295
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=75.54 E-value=1.4e+02 Score=33.26 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHH--------HHHhh-----hchHHHhHHHHHHh
Q 046695 363 IATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRD----LKMAVS--------DAEQK-----IFPEKAQIKAEILG 425 (604)
Q Consensus 363 ie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~e----Lk~~l~--------d~eek-----ls~eKa~l~~ei~~ 425 (604)
+..+...++..+.-+...|.+-.+|+.-.+++..++.. |..-+. -..+. +...--....+|.=
T Consensus 444 nahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQY 523 (593)
T KOG4807|consen 444 NAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQY 523 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHH
Confidence 33455556666666666666666666665555444333 322111 00000 00001113345555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 426 LYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHI 483 (604)
Q Consensus 426 LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~L 483 (604)
|..++.+|+++|.-..+...-...+.+++..++.-+.....-+|+.+|..+.-....|
T Consensus 524 LKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteAL 581 (593)
T KOG4807|consen 524 LKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEAL 581 (593)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHh
Confidence 6666677777766666666666677777777774444345556666666665544443
No 296
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=75.33 E-value=63 Score=29.14 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 425 GLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 425 ~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
.+......++.++..+..++..++.++..+..-+
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~ 40 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKAL 40 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333
No 297
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=74.79 E-value=1.1e+02 Score=31.53 Aligned_cols=24 Identities=8% Similarity=0.393 Sum_probs=11.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 502 SDVISRDDRMDQMEKHLQQLHMEH 525 (604)
Q Consensus 502 qe~~s~r~~I~emE~~L~qLr~E~ 525 (604)
.+...+...+.++.+.+..+....
T Consensus 168 ~Ek~~Re~~~~~l~~~le~~~~~~ 191 (247)
T PF06705_consen 168 KEKNTRESKLSELRSELEEVKRRR 191 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 298
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=74.77 E-value=1.2e+02 Score=32.12 Aligned_cols=9 Identities=0% Similarity=0.361 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 046695 398 VRDLKMAVS 406 (604)
Q Consensus 398 I~eLk~~l~ 406 (604)
+.+.-..+.
T Consensus 151 l~e~~~~l~ 159 (269)
T PF05278_consen 151 LKEMIATLK 159 (269)
T ss_pred HHHHHHHHH
Confidence 333333333
No 299
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.64 E-value=2.2e+02 Score=35.02 Aligned_cols=142 Identities=19% Similarity=0.155 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----H
Q 046695 428 EEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLES----D 503 (604)
Q Consensus 428 Ek~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leq----e 503 (604)
.+...+..++..+.+++...+.-++....+..+.. .--.+.......+...+..+..+++.+..++..... -
T Consensus 467 ~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~----~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl 542 (913)
T KOG0244|consen 467 QKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKS----KAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKL 542 (913)
T ss_pred HHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhh----HHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHh
Confidence 34444566666666666554444444433221111 011111112222222233333444444443333222 2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 046695 504 VISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQL 574 (604)
Q Consensus 504 ~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQl 574 (604)
...+..+++.++.++..++......-..+ ..+.+-.++..++..=--.++.|++.+.-.--+=-++.||.
T Consensus 543 ~eer~qklk~le~q~s~lkk~l~~~~~l~-~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~ 612 (913)
T KOG0244|consen 543 GEERVQKLKSLETQISLLKKKLSSQRKLI-KPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQW 612 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34556667777777766666444333222 23333334444444333444555555544433334455554
No 300
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.14 E-value=1.1e+02 Score=34.11 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695 469 IEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTE 527 (604)
Q Consensus 469 Is~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~ 527 (604)
..++..+++.-......+.+++..+..+-..+...+..+...|+.+..+..+++.++..
T Consensus 15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555555555555555555555555555555555555544
No 301
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=74.09 E-value=1.4e+02 Score=32.49 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKA 417 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa 417 (604)
...+++--|...++-++.-+.+....+...-+|-+.+..|..+.+.+..-|....+.+. ..+++...+.
T Consensus 110 a~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKl 178 (391)
T KOG1850|consen 110 AVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKL 178 (391)
T ss_pred HHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHH
Confidence 45666666777777777666667777777777777777777777777777766665555 4444444333
No 302
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=73.51 E-value=10 Score=41.65 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=8.3
Q ss_pred HHhhHHHHHHHHhcC
Q 046695 581 YRSGYISLRKAVIGH 595 (604)
Q Consensus 581 yR~~y~~L~~~~~gh 595 (604)
=|-.|..+.+.|.++
T Consensus 295 kRr~~~~i~~~Lr~~ 309 (370)
T PF02994_consen 295 KRRKFNPIKKKLREK 309 (370)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 345555566666554
No 303
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=73.16 E-value=62 Score=28.15 Aligned_cols=8 Identities=38% Similarity=0.355 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 046695 431 ACLVEQLR 438 (604)
Q Consensus 431 ~sLe~eL~ 438 (604)
..+..++.
T Consensus 8 ~~l~~~l~ 15 (106)
T PF01920_consen 8 QELNQQLQ 15 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 304
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.10 E-value=2.5e+02 Score=35.01 Aligned_cols=8 Identities=50% Similarity=0.588 Sum_probs=4.6
Q ss_pred HHhhhHHH
Q 046695 573 QLCFSLEH 580 (604)
Q Consensus 573 Qlcfsleh 580 (604)
.||=|++|
T Consensus 505 plcgs~~h 512 (1042)
T TIGR00618 505 PLCGSCIH 512 (1042)
T ss_pred CCCCCCCC
Confidence 35666666
No 305
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=72.52 E-value=2.4e+02 Score=34.57 Aligned_cols=15 Identities=0% Similarity=-0.285 Sum_probs=9.9
Q ss_pred HHHhhhcchhHHHHH
Q 046695 59 KAEMYYQKRPELISH 73 (604)
Q Consensus 59 ~ae~y~~~rp~l~~~ 73 (604)
.+-.||+.+|+....
T Consensus 426 ~k~~a~~q~iD~~e~ 440 (984)
T COG4717 426 EKIAANSQVIDKEEV 440 (984)
T ss_pred HHHHhhcCCCCHHHH
Confidence 344578888877654
No 306
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.41 E-value=92 Score=37.13 Aligned_cols=29 Identities=7% Similarity=-0.117 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046695 513 QMEKHLQQLHMEHTELIKGAEDAHRMVGE 541 (604)
Q Consensus 513 emE~~L~qLr~E~e~le~~l~elk~kl~E 541 (604)
+.+.++.+|.++.+-.+.....+-.+..|
T Consensus 367 ~~e~~~~~L~R~~~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAVYLQLLNRQQE 395 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444443333333
No 307
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=72.29 E-value=1.3e+02 Score=31.42 Aligned_cols=14 Identities=29% Similarity=0.193 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q 046695 329 LSEAEIASLKQEVE 342 (604)
Q Consensus 329 ~se~eI~~Lk~EL~ 342 (604)
.++.-|++--.++.
T Consensus 75 ~LeeliNkWs~el~ 88 (254)
T KOG2196|consen 75 TLEELINKWSLELE 88 (254)
T ss_pred HHHHHHHHHHHHHH
Confidence 35556666555543
No 308
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.82 E-value=1.1e+02 Score=32.60 Aligned_cols=45 Identities=27% Similarity=0.289 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Q 046695 429 EKACLVEQLREWESRGRSLEDELRIIKTQKTELEER-IVGEIEQLK 473 (604)
Q Consensus 429 k~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~-le~eIs~lk 473 (604)
-+.+|+.+|.+-..++...+.+|..++.++.-|.+. +++++-...
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVE 114 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVE 114 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777777777555533 555554443
No 309
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.63 E-value=28 Score=31.97 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 510 RMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEK 555 (604)
Q Consensus 510 ~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~ 555 (604)
.+.+|+.+|.++-.+...|.+.+..+-..-+.|++.-..|++++.+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444455555556666666666666654
No 310
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.39 E-value=61 Score=27.53 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 316 LMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWK 367 (604)
Q Consensus 316 L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~ 367 (604)
|...+..+.+.+..+..++..|+.+..++ ......|..+....+.+.+.|.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L-~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNEL-KEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444554444444333 2333334444444443333333
No 311
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.34 E-value=2e+02 Score=33.13 Aligned_cols=44 Identities=30% Similarity=0.464 Sum_probs=31.5
Q ss_pred HHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHH
Q 046695 544 LKAKELEEE-IEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYIS 587 (604)
Q Consensus 544 ~rv~eLeEe-ve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~ 587 (604)
+++.++.+. +++.|+.+..--+-=-+.|-+|-.=|+-||.+.-+
T Consensus 377 se~~e~teqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~ 421 (613)
T KOG0992|consen 377 SEYSELTEQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAILR 421 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444555555 67777777777777778888888888888876543
No 312
>PRK10698 phage shock protein PspA; Provisional
Probab=71.13 E-value=1.3e+02 Score=30.79 Aligned_cols=39 Identities=0% Similarity=-0.001 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695 371 NSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409 (604)
Q Consensus 371 E~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e 409 (604)
......+.++...+...-.....++.++.++...+.+..
T Consensus 34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444455555555555555555555444443
No 313
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=71.10 E-value=1.6e+02 Score=32.10 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHHhh
Q 046695 444 GRSLEDELRIIKTQK 458 (604)
Q Consensus 444 i~sLe~eIkql~~E~ 458 (604)
|-.|+.++.++-.++
T Consensus 203 I~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 203 IGKLESKVQDLMYEI 217 (401)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455544444
No 314
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.02 E-value=2.3e+02 Score=33.74 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKL 380 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~L 380 (604)
+++.|+.+|..+++++..--.++......|..|
T Consensus 161 kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l 193 (660)
T KOG4302|consen 161 KLEELREHLNELQKEKSDRLEKVLELKEEIKSL 193 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666776666666555554444444444444
No 315
>PRK11519 tyrosine kinase; Provisional
Probab=70.55 E-value=1.9e+02 Score=34.59 Aligned_cols=24 Identities=8% Similarity=0.483 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 346 SEKIQTLQNQLQLAQKDIATWKSK 369 (604)
Q Consensus 346 ~~kieqLq~eLe~~q~eie~i~~k 369 (604)
..++..++.+++.++..++.++.+
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666654
No 316
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=70.00 E-value=1.2e+02 Score=30.32 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIK 455 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~ 455 (604)
....++.++..+..++......+..++.+|....
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555544444444444444443
No 317
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.53 E-value=2.3e+02 Score=33.10 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 516 KHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 516 ~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
.++.+|..+...+...+..+-..++..|
T Consensus 342 ~~~~~Le~~~~~l~~~~~~~A~~Ls~~R 369 (557)
T COG0497 342 ESLEALEKEVKKLKAELLEAAEALSAIR 369 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333333333333
No 318
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=69.23 E-value=24 Score=29.39 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 046695 396 HEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGR 445 (604)
Q Consensus 396 eeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~ 445 (604)
.+|.+|+..+...+.-+ +.++..+..++..+..|+..+..+..+++
T Consensus 4 ~Ri~~LE~~la~qe~~i----e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTI----EELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 12333444444444444444443333333
No 319
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=68.97 E-value=97 Score=28.63 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=38.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 046695 424 LGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASI 476 (604)
Q Consensus 424 ~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el 476 (604)
..+.+..+++...|.|+..+|..++..|+..+.+. + +....+.++++..
T Consensus 65 qel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~---~-k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 65 QELEEARTNVGKRLEFISKEIKRLENQIRDSQEEF---E-KQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHh
Confidence 45667788999999999999999999999988887 5 5666666665543
No 320
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.92 E-value=1.1e+02 Score=30.47 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSL 490 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek 490 (604)
.+..+|..+...+..+...|+.....+
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444444444443333
No 321
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.58 E-value=1.9e+02 Score=31.71 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=17.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 418 QIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 418 ~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
+++..-.+|.+.+-+...-+-......+.++.-+.++.++.
T Consensus 103 qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn 143 (401)
T PF06785_consen 103 QLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREEN 143 (401)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34444444444444444444433344444444444444444
No 322
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.48 E-value=65 Score=27.96 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046695 317 MEELRITKEKLMLSEAEIASLKQ 339 (604)
Q Consensus 317 ~eEL~~~~eeL~~se~eI~~Lk~ 339 (604)
...+.++...|.-+.++|..|+.
T Consensus 10 E~KIqqAvdtI~LLqmEieELKe 32 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433
No 323
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.40 E-value=67 Score=36.59 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 507 RDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 507 ~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
+...+.-+..++..++.++..+...+..++.++..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ 165 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444333333333333333333333
No 324
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.28 E-value=1.1e+02 Score=28.70 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 046695 492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAI 571 (604)
Q Consensus 492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAI 571 (604)
.++..+..++.++...-..+..+......+..+...+... .....-.+.|+..+.+.+++-+..-...+++.
T Consensus 52 ~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~-~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~------- 123 (150)
T PF07200_consen 52 SLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSN-YSPDALLARLQAAASEAEEESEELAEEFLDGE------- 123 (150)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSH-------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------
Confidence 3344444445555555555555555555555555555332 23444556677777777777766544444442
Q ss_pred HHHhhhHHHHHhhHHHHHHHH
Q 046695 572 RQLCFSLEHYRSGYISLRKAV 592 (604)
Q Consensus 572 rQlcfslehyR~~y~~L~~~~ 592 (604)
..++=|=..|...|...
T Consensus 124 ----~d~~~Fl~~f~~~R~~y 140 (150)
T PF07200_consen 124 ----IDVDDFLKQFKEKRKLY 140 (150)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHH
Confidence 24566666677777666
No 325
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.22 E-value=60 Score=27.55 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKH 482 (604)
Q Consensus 468 eIs~lk~el~e~~~~ 482 (604)
-|..|+..+.+....
T Consensus 34 ~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQ 48 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 326
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=67.18 E-value=1.2e+02 Score=28.82 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046695 520 QLHMEHTELIKGAEDAHRMVGELRLKAKEL 549 (604)
Q Consensus 520 qLr~E~e~le~~l~elk~kl~ELK~rv~eL 549 (604)
..+.+...|-..+..+..++..+|.++.+|
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 344454545555555555555555444443
No 327
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.15 E-value=1.4e+02 Score=29.82 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=5.5
Q ss_pred HHhhhhhHHHHHHHH
Q 046695 387 LKTSLSDRDHEVRDL 401 (604)
Q Consensus 387 Lk~qlq~leeeI~eL 401 (604)
+..++......+.++
T Consensus 56 le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 56 LERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 328
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.13 E-value=79 Score=26.91 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 313 VKALMEELRITKEKLMLSEAEIASLKQE 340 (604)
Q Consensus 313 l~~L~eEL~~~~eeL~~se~eI~~Lk~E 340 (604)
+++|...+.++...|.-+..+|..|+..
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEk 33 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666553
No 329
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=66.94 E-value=85 Score=27.17 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 503 DVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA 546 (604)
Q Consensus 503 e~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv 546 (604)
++......+..++..+..+......+...+...+..+.+-..++
T Consensus 46 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 46 QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433333333333333333333333
No 330
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=66.75 E-value=69 Score=31.80 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046695 532 AEDAHRMVGELRLKAKELEEEIEKQRVVILEGA 564 (604)
Q Consensus 532 l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~a 564 (604)
+.+++..+++|+-.+.+.+++++..|.-+-..-
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 345566677777777777777777776665544
No 331
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.19 E-value=1.7e+02 Score=31.23 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 046695 391 LSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 391 lq~leeeI~eLk~~l~d~eekl 412 (604)
++..+=-|..|++.+.+....+
T Consensus 63 LQQKEV~iRHLkakLkes~~~l 84 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRL 84 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444
No 332
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.57 E-value=39 Score=30.79 Aligned_cols=47 Identities=34% Similarity=0.460 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 510 RMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ 556 (604)
Q Consensus 510 ~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~q 556 (604)
.|.+++.+|.++-.+...|...+..+-..-+.|++.-..|++++.+.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555566666666666666443
No 333
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.38 E-value=1.7e+02 Score=33.54 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 046695 308 DLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSER 374 (604)
Q Consensus 308 el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~ 374 (604)
+|...++...++.......|+.....+..|+..-.+. ..+|..++.+...++.||=.+..+++..+
T Consensus 338 dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~-~~KI~~~k~r~~~Ls~RiLRv~ikqeilr 403 (508)
T KOG3091|consen 338 DLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADA-VAKIEEAKNRHVELSHRILRVMIKQEILR 403 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555556666666666665332222 34666666666666666666665555555
No 334
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=65.01 E-value=72 Score=27.50 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 046695 425 GLYEEKACLVEQLREWESRGRSLEDELRII 454 (604)
Q Consensus 425 ~LqEk~~sLe~eL~ele~~i~sLe~eIkql 454 (604)
....++.+++.++..+......++.++..+
T Consensus 61 ~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 61 PYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366677777777776666666666555443
No 335
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=64.91 E-value=95 Score=27.00 Aligned_cols=22 Identities=18% Similarity=0.364 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 046695 490 LDSLKAERDRLESDVISRDDRM 511 (604)
Q Consensus 490 k~~Le~el~~Leqe~~s~r~~I 511 (604)
+..+..+-..|.++...+...+
T Consensus 48 r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 48 REELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 336
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=64.61 E-value=68 Score=28.45 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046695 378 SKLQERIKSLKTSLSDRDHEVRDLKMAVS 406 (604)
Q Consensus 378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~ 406 (604)
..|..+.+.++.++..++.++..++..+.
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554444443
No 337
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=64.60 E-value=1.2e+02 Score=32.08 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=27.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 046695 480 DKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAH 536 (604)
Q Consensus 480 ~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk 536 (604)
...|--|..+...++......-.++...-+.|...|..+...+..+..|...+.-++
T Consensus 102 sDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk 158 (271)
T PF13805_consen 102 SDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLK 158 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHH
Confidence 333334444444444444444444444445555555555555555555555444443
No 338
>PRK11519 tyrosine kinase; Provisional
Probab=64.10 E-value=2.2e+02 Score=34.04 Aligned_cols=9 Identities=11% Similarity=0.202 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 046695 518 LQQLHMEHT 526 (604)
Q Consensus 518 L~qLr~E~e 526 (604)
+.+|.++.+
T Consensus 372 ~~~L~Re~~ 380 (719)
T PRK11519 372 IVRLTRDVE 380 (719)
T ss_pred HHHHHHHHH
Confidence 333333333
No 339
>PRK10698 phage shock protein PspA; Provisional
Probab=63.99 E-value=1.8e+02 Score=29.77 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Q 046695 377 VSKLQERIKSLKTSLSDRDHEVRDL 401 (604)
Q Consensus 377 i~~LqeeI~eLk~qlq~leeeI~eL 401 (604)
++.+-..-+.+..++......+.++
T Consensus 47 lA~~~A~~k~~er~~~~~~~~~~~~ 71 (222)
T PRK10698 47 SARALAEKKQLTRRIEQAEAQQVEW 71 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444
No 340
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.64 E-value=1.7e+02 Score=29.38 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 046695 395 DHEVRDLKMAVSDAE 409 (604)
Q Consensus 395 eeeI~eLk~~l~d~e 409 (604)
-..+..+...+..++
T Consensus 68 ~~~f~~~~~tl~~LE 82 (190)
T PF05266_consen 68 RSSFESLMKTLSELE 82 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 341
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=63.55 E-value=3e+02 Score=32.24 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHLQQ 520 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L~q 520 (604)
+..++..+......-+..+..+...+..
T Consensus 515 ~~sel~sl~~~~~~~~~r~~~~~~~l~~ 542 (607)
T KOG0240|consen 515 LKSELQSLQEPSEHQSKRITELLSELRK 542 (607)
T ss_pred hHHHHHhhhhcccchhHHHHHHHHHHHh
Confidence 3444455555555555555555444433
No 342
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=63.42 E-value=46 Score=38.53 Aligned_cols=56 Identities=14% Similarity=0.298 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKM 403 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~ 403 (604)
.+.+++...+.++.+|+.++.++++.++.+..-|.++..|+..++..+..+.+|.+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34455555556666677777777777777777777777777777766666666543
No 343
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.36 E-value=1.7e+02 Score=29.11 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e 409 (604)
.+..+|..|++++..+..++.+++.......
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544443
No 344
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=62.24 E-value=80 Score=28.73 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=40.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAE 478 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e 478 (604)
++-.+..-+.+.+.|...|...+..++.++.++.-+.... . .|..+|..++.++..
T Consensus 17 LKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN---~-QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 17 LKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRN---Q-QLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHH
Confidence 3334445556677888888888888888887777777777 5 677788888777763
No 345
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=62.13 E-value=2e+02 Score=30.97 Aligned_cols=20 Identities=5% Similarity=0.345 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046695 349 IQTLQNQLQLAQKDIATWKS 368 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~ 368 (604)
+..++.++..++..+..++.
T Consensus 179 l~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 179 VKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 346
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=61.99 E-value=2.4e+02 Score=30.71 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=12.7
Q ss_pred HHHHHhhHHHHHHHHHh
Q 046695 233 FARIVGYEKKLRLANEK 249 (604)
Q Consensus 233 ~~~~~~~~~el~~~n~~ 249 (604)
++++..+|-++-.+|+-
T Consensus 75 rsKLeelCRelQr~nk~ 91 (391)
T KOG1850|consen 75 RSKLEELCRELQRANKQ 91 (391)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36777888888877775
No 347
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.78 E-value=32 Score=37.21 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=44.7
Q ss_pred hhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 046695 299 INGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVS 378 (604)
Q Consensus 299 I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~ 378 (604)
|.+++..+......+......|......|...+..+..|+.++... ..+...++.+++....++.....=+.
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~--------~~e~~~l~~~~~~~~~kl~rA~~Li~ 287 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEA--------QKEKQELEEEIEETERKLERAEKLIS 287 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhccHHHHHh
Confidence 3333444444444444444445444445555555555555544333 22233333333333444444445555
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDL 401 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eL 401 (604)
.|..+-.++...+..+...+.-+
T Consensus 288 ~L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 288 GLSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp CCHHHHHCCHCHHHHHHHHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHhccc
Confidence 55555566666555555554444
No 348
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.31 E-value=2.4e+02 Score=30.48 Aligned_cols=84 Identities=19% Similarity=0.303 Sum_probs=65.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046695 484 ENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEG 563 (604)
Q Consensus 484 e~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~ 563 (604)
-.++.....+...+..+...+......+......|..+...+..+...+.........|...+.....++.+-...|..+
T Consensus 210 ~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 210 YEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp HHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 34445666677777777777777777777777777777777777777777777778888888888888888888888888
Q ss_pred hhhH
Q 046695 564 AEEK 567 (604)
Q Consensus 564 aEeK 567 (604)
+.|+
T Consensus 290 ~~E~ 293 (344)
T PF12777_consen 290 SGEK 293 (344)
T ss_dssp HHHH
T ss_pred cchh
Confidence 8876
No 349
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.26 E-value=86 Score=35.75 Aligned_cols=31 Identities=10% Similarity=0.309 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 046695 375 KEVSKLQERIKSLKTSLSDRDHEVRDLKMAV 405 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l 405 (604)
.++..+..++..+..++..+++++..|+.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444443333
No 350
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=61.24 E-value=2.4e+02 Score=30.49 Aligned_cols=61 Identities=26% Similarity=0.290 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh------HHHHHHhHHHHHHHHHHHHHHHH
Q 046695 381 QERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ------IKAEILGLYEEKACLVEQLREWE 441 (604)
Q Consensus 381 qeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~------l~~ei~~LqEk~~sLe~eL~ele 441 (604)
|++-+-|..-.-..--+|..|.+.+.++++-+-.-=+. ++-+++.+.++...|+.+|....
T Consensus 20 qEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELARaK 86 (351)
T PF07058_consen 20 QEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELARAK 86 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333345666666666666655331111 55566666666666666665433
No 351
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=60.96 E-value=1.2e+02 Score=26.93 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=19.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695 483 IENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQ 519 (604)
Q Consensus 483 Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~ 519 (604)
|.....+.+.++..|..|++-++.++....++|..++
T Consensus 61 l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 61 LQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444555555555555555555555555555543
No 352
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=60.50 E-value=1.6e+02 Score=28.04 Aligned_cols=11 Identities=55% Similarity=0.773 Sum_probs=4.0
Q ss_pred HHHhhHHHHHH
Q 046695 485 NLNRSLDSLKA 495 (604)
Q Consensus 485 ~L~~ek~~Le~ 495 (604)
+|.++.|+|.+
T Consensus 38 aL~~ELDsL~~ 48 (134)
T PF15233_consen 38 ALQRELDSLNG 48 (134)
T ss_pred HHHHHHHHHhh
Confidence 33333333333
No 353
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=60.22 E-value=77 Score=27.07 Aligned_cols=30 Identities=33% Similarity=0.310 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 046695 327 LMLSEAEIASLKQEVESNRSEKIQTLQNQLQ 357 (604)
Q Consensus 327 L~~se~eI~~Lk~EL~sl~~~kieqLq~eLe 357 (604)
|+..+..|..|+.|=+++ .-+|--|...+.
T Consensus 2 lrEqe~~i~~L~KENF~L-KLrI~fLee~l~ 31 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNL-KLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHHhhhhH-HHHHHHHHHHHH
Confidence 455667777777777766 556666666665
No 354
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=59.79 E-value=1.3e+02 Score=28.35 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhch
Q 046695 375 KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~ 414 (604)
.....+++++..++.++...-.++..|+..+.....++..
T Consensus 48 e~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 48 EQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666666666666555566655555555544433
No 355
>PF15294 Leu_zip: Leucine zipper
Probab=58.30 E-value=2.6e+02 Score=29.85 Aligned_cols=131 Identities=18% Similarity=0.273 Sum_probs=61.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH------------HHHHHHHHHHHHHHHHHHH----
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEE------------RIVGEIEQLKASIAERDKH---- 482 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~------------~le~eIs~lk~el~e~~~~---- 482 (604)
++-+|.+|++++..++..+..++.+....-.+-..++.++.++.. .-..++..+...++.+...
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 555556666666666665555555555444444444444433331 0011222222222222222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 483 IENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 483 Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev 553 (604)
+.+..+....|+..+.....++-.....+...+..|..+=. -...+.+++.-+..-+-++.+|+.++
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfq----qT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQ----QTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhC----ccHHHHHhHHHHHhccHHHHHHHHHh
Confidence 22333444455555555555555555554444444433221 13445566666666666666666665
No 356
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=58.25 E-value=4.4e+02 Score=32.48 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhhh
Q 046695 232 LFARIVGYEKKLRLANEKIHISNEEILRLKIELQKY 267 (604)
Q Consensus 232 l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~~ 267 (604)
+.-.|.+.-+++...+++.+.++.+++.|..+..-+
T Consensus 611 ~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af 646 (984)
T COG4717 611 QQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAF 646 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777778888888888888888877655
No 357
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.12 E-value=3.4e+02 Score=31.18 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=9.2
Q ss_pred HHHHHHHhhhhhHHHHHHHH
Q 046695 382 ERIKSLKTSLSDRDHEVRDL 401 (604)
Q Consensus 382 eeI~eLk~qlq~leeeI~eL 401 (604)
..|.+++.++.++.++|-.+
T Consensus 376 ~KI~~~k~r~~~Ls~RiLRv 395 (508)
T KOG3091|consen 376 AKIEEAKNRHVELSHRILRV 395 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 358
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=58.05 E-value=2.7e+02 Score=30.00 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 513 QMEKHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 513 emE~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
....++..|.++.+-.......+-.++.+.+
T Consensus 275 ~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 275 EQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555544444444444444444
No 359
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=58.03 E-value=2.1e+02 Score=28.63 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 489 SLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH 525 (604)
Q Consensus 489 ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~ 525 (604)
..+.|+.++..|.........+|..+|..|.+=..++
T Consensus 121 kLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqR 157 (178)
T PF14073_consen 121 KLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQR 157 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666555555666666666654443333
No 360
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=57.81 E-value=2e+02 Score=28.55 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=8.5
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLR 438 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ 438 (604)
|..++.++......+..+|.
T Consensus 100 L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 100 LQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 361
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=57.60 E-value=3.3e+02 Score=30.94 Aligned_cols=133 Identities=24% Similarity=0.241 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695 310 DNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT 389 (604)
Q Consensus 310 ~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ 389 (604)
..+-..|.++|+. .|.....-..+++.+|..- ..--+.|.+-+..+ -.-....-..-++||+....|-.
T Consensus 290 ES~WIsLteeLR~---dle~~r~~aek~~~EL~~E-k~c~eEL~~al~~A-------~~GhaR~lEqYadLqEk~~~Ll~ 358 (488)
T PF06548_consen 290 ESKWISLTEELRV---DLESSRSLAEKLEMELDSE-KKCTEELDDALQRA-------MEGHARMLEQYADLQEKHNDLLA 358 (488)
T ss_pred HhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777665 3444444444555554322 11122222222222 11122233455666777777777
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhchHHHh----HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 390 SLSDRDHEVRDLKMAVSDAEQKIFPEKAQ----IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 390 qlq~leeeI~eLk~~l~d~eekls~eKa~----l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
......+=|.+.+.+...+- ....-+. +-++|+-+. .--+.+..++..+...|..++++-....
T Consensus 359 ~Hr~i~egI~dVKkaAakAg--~kG~~~rF~~slaaEiSalr---~erEkEr~~l~~eNk~L~~QLrDTAEAV 426 (488)
T PF06548_consen 359 RHRRIMEGIEDVKKAAAKAG--VKGAESRFINSLAAEISALR---AEREKERRFLKDENKGLQIQLRDTAEAV 426 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 77666777777766555431 1111111 222322222 2234456666666667777776655555
No 362
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.38 E-value=96 Score=28.01 Aligned_cols=57 Identities=19% Similarity=0.372 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 046695 349 IQTLQNQLQLAQKDIATWKSKLNSE--RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAV 405 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~kLE~e--~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l 405 (604)
+..+.+.+.....++..++.+++.. ..++..|+-+|.+++-++..+..+|..+...+
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444 44444444444544444444444444443333
No 363
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.93 E-value=1.2e+02 Score=25.77 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 309 LDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWK 367 (604)
Q Consensus 309 l~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~ 367 (604)
+..++..-.+-+.-+..++..+..+.+.|.++..++ ....+.|+.+-+.+..+-..|+
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~-q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA-QHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555666666666665555 4445555555555555544554
No 364
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=56.39 E-value=2.2e+02 Score=28.53 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHH
Q 046695 316 LMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRD 395 (604)
Q Consensus 316 L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~le 395 (604)
|..+++.+..-++.....+...+.-+... .....+.+..+..+..-+...+..+.....-....+.++.+-..-+....
T Consensus 72 Le~ev~EAe~vV~ee~~sL~~aq~na~aA-~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk 150 (188)
T PF05335_consen 72 LEQEVREAEAVVQEEKASLQQAQANAQAA-QRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAK 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333332 23344444555555555555555555555556666666666666666666
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 046695 396 HEVRDLKMAVSDAEQKIF 413 (604)
Q Consensus 396 eeI~eLk~~l~d~eekls 413 (604)
.++..|...+......|.
T Consensus 151 ~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 151 RRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666665555553
No 365
>PRK00295 hypothetical protein; Provisional
Probab=56.37 E-value=65 Score=26.95 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 046695 397 EVRDLKMAVSDAE 409 (604)
Q Consensus 397 eI~eLk~~l~d~e 409 (604)
+|.+|+..+...+
T Consensus 6 Ri~~LE~kla~qE 18 (68)
T PRK00295 6 RVTELESRQAFQD 18 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 366
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=56.20 E-value=84 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHTEL 528 (604)
Q Consensus 496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~l 528 (604)
.+..+..++...+.+++-++.+|...+.++++|
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677777777777777777766666654
No 367
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=56.17 E-value=2.2e+02 Score=28.36 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Q 046695 374 RKEVSKLQERIKSLKTSLSDRDHEV 398 (604)
Q Consensus 374 ~~ei~~LqeeI~eLk~qlq~leeeI 398 (604)
..-|.+|+..+..++..+.+++..+
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666655555555
No 368
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=56.06 E-value=3.5e+02 Score=30.63 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695 477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHT 526 (604)
Q Consensus 477 ~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e 526 (604)
+.+...|..+..++..+.++....-.+++...-..-+.++.|+.+..++.
T Consensus 207 ~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~ 256 (447)
T KOG2751|consen 207 AELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIE 256 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 33444455555555555555555555666665555555555555555444
No 369
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=55.80 E-value=2.9e+02 Score=29.74 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 046695 313 VKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLS 392 (604)
Q Consensus 313 l~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq 392 (604)
+..+-+..++++++=...-..|..+...+.++ ...+|...+..+..-|...+..++....++..|+..|..+...+.
T Consensus 36 ~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~M---s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~ 112 (301)
T PF06120_consen 36 WYYFYQNAEQARQEAIEFADSLDELKEKLKEM---SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLA 112 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 046695 393 DRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDE 450 (604)
Q Consensus 393 ~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~e 450 (604)
.-..-....--..-.....+....+.+..++...+.+++.........+..+..+..+
T Consensus 113 ~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~ 170 (301)
T PF06120_consen 113 EKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQ 170 (301)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 370
>PF14992 TMCO5: TMCO5 family
Probab=55.07 E-value=2.9e+02 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 315 ALMEELRITKEKLMLSEAEIASLKQ 339 (604)
Q Consensus 315 ~L~eEL~~~~eeL~~se~eI~~Lk~ 339 (604)
.+-..+..+...++.++.+|.....
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444455555555554433
No 371
>PF15456 Uds1: Up-regulated During Septation
Probab=54.95 E-value=1.2e+02 Score=28.38 Aligned_cols=37 Identities=22% Similarity=0.105 Sum_probs=25.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
.+.+..+.+.....++.+|..++..+++++..+...+
T Consensus 75 ~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 75 SSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777777776666665
No 372
>PRK00736 hypothetical protein; Provisional
Probab=54.21 E-value=66 Score=26.90 Aligned_cols=18 Identities=6% Similarity=0.167 Sum_probs=7.4
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 046695 421 AEILGLYEEKACLVEQLR 438 (604)
Q Consensus 421 ~ei~~LqEk~~sLe~eL~ 438 (604)
..+.+++..+..|...+.
T Consensus 26 ~~v~~Qq~~i~~L~~ql~ 43 (68)
T PRK00736 26 DQLAEQWKTVEQMRKKLD 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 373
>PRK12704 phosphodiesterase; Provisional
Probab=54.06 E-value=4e+02 Score=30.77 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhHHHHHhh
Q 046695 567 KREAIRQLCFSLEHYRSG 584 (604)
Q Consensus 567 KreAIrQlcfslehyR~~ 584 (604)
++.|=+=++-.+..|=..
T Consensus 187 ~~~a~~i~~~a~qr~a~~ 204 (520)
T PRK12704 187 DKKAKEILAQAIQRCAAD 204 (520)
T ss_pred HHHHHHHHHHHHHhhcch
Confidence 455555566666555443
No 374
>PLN03188 kinesin-12 family protein; Provisional
Probab=53.88 E-value=5.9e+02 Score=32.69 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 435 EQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 435 ~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
++-+|+..+...|+.++++-.+..
T Consensus 1173 ker~~~~~enk~l~~qlrdtaeav 1196 (1320)
T PLN03188 1173 KERRYLRDENKSLQAQLRDTAEAV 1196 (1320)
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHH
Confidence 345555555555665555554444
No 375
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=53.85 E-value=1.6e+02 Score=26.08 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAE 533 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~ 533 (604)
++..+..+.......+.....+...+++.+..|..++...+...-...++.+.+..+...+...+.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555555555555555555555554443
No 376
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.81 E-value=4.7e+02 Score=31.50 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hh
Q 046695 490 LDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEG----AE 565 (604)
Q Consensus 490 k~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~----aE 565 (604)
...|...+.++...-++-...|.+|-++|++|-.-+..+..-+- .++.|.+=+.. ||.++.+++-+ |-
T Consensus 81 i~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT----~L~~L~MLv~~----vesL~~l~~kr~y~e~a 152 (793)
T KOG2180|consen 81 IEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSIT----TLHRLHMLVTG----VESLNALLSKRSYGEAA 152 (793)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHH----HHHHHHHHHHH----HHHHHHHHhhccHHHHH
Confidence 33344555555555555666777788888888777777766443 33444443333 23333333222 11
Q ss_pred hHHHHHHHHhhhHHHHHh
Q 046695 566 EKREAIRQLCFSLEHYRS 583 (604)
Q Consensus 566 eKreAIrQlcfslehyR~ 583 (604)
-=-.||-|||--...||+
T Consensus 153 ~~lqai~~ll~~F~~Yk~ 170 (793)
T KOG2180|consen 153 SPLQAILQLLNHFIAYKS 170 (793)
T ss_pred hHHHHHHHHHHHHHHhcc
Confidence 224688899988888875
No 377
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=53.81 E-value=3e+02 Score=29.20 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=59.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
++..+..+...+..++..+..+...-..|+.+|++...++ + ..++....++ ..-=....+.+.++.++.
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL---E-R~qKRL~sLq-------~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL---E-RNQKRLQSLQ-------SVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHH-------hcChHHHHHHHHHHHHHH
Confidence 4555666666666666666666666667777777777776 5 4554444442 111234456666777777
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHME 524 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E 524 (604)
.+=..|..+=..+.=++.+|...++.
T Consensus 236 ~lY~~Y~~kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 236 KLYEIYVEKFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 77777777777777777777665543
No 378
>PRK02119 hypothetical protein; Provisional
Probab=53.51 E-value=70 Score=27.15 Aligned_cols=9 Identities=22% Similarity=0.685 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 046695 398 VRDLKMAVS 406 (604)
Q Consensus 398 I~eLk~~l~ 406 (604)
|.+|+..+.
T Consensus 11 i~~LE~rla 19 (73)
T PRK02119 11 IAELEMKIA 19 (73)
T ss_pred HHHHHHHHH
Confidence 333333333
No 379
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.43 E-value=2.5e+02 Score=28.17 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 538 MVGELRLKAKELEEEI 553 (604)
Q Consensus 538 kl~ELK~rv~eLeEev 553 (604)
.+..++..+..|.+.+
T Consensus 160 ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 160 EISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 380
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.34 E-value=2.6e+02 Score=33.97 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=11.1
Q ss_pred HhhhHHHHHHHHhhhhhhhhh
Q 046695 195 VNELETELREAKEKLHSQEER 215 (604)
Q Consensus 195 ~~~le~e~~~~~~k~~~~~e~ 215 (604)
+.+|..++.++..+....+..
T Consensus 229 ~~~ln~~l~~l~~~~~~~~~~ 249 (782)
T PRK00409 229 VVELNNEIRELRNKEEQEIER 249 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666665555555444333
No 381
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.01 E-value=4.4e+02 Score=30.88 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046695 349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVS 406 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~ 406 (604)
+.+++..++.--.+++.++.+.+........|.+++.+.+...+.+...+..|.+.+.
T Consensus 590 ~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 590 VKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 4444444444444555556666666677777778888888888888887777765443
No 382
>PRK04325 hypothetical protein; Provisional
Probab=52.73 E-value=72 Score=27.11 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 046695 397 EVRDLKMAVSDAE 409 (604)
Q Consensus 397 eI~eLk~~l~d~e 409 (604)
+|.+|+..+...+
T Consensus 10 Ri~~LE~klAfQE 22 (74)
T PRK04325 10 RITELEIQLAFQE 22 (74)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 383
>PRK02793 phi X174 lysis protein; Provisional
Probab=52.56 E-value=73 Score=26.92 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 046695 396 HEVRDLKMAVSDAE 409 (604)
Q Consensus 396 eeI~eLk~~l~d~e 409 (604)
.+|.+|+..+...+
T Consensus 8 ~Ri~~LE~~lafQe 21 (72)
T PRK02793 8 ARLAELESRLAFQE 21 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 384
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=52.11 E-value=1.6e+02 Score=25.54 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHH
Q 046695 359 AQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKAC 432 (604)
Q Consensus 359 ~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~s 432 (604)
+...++.++..++....+.......-..+..++...-.++..++..|.+++..+...|..+-.+|.+|...+.+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 385
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=52.07 E-value=2.3e+02 Score=27.43 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDR------LESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHR 537 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~------Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~ 537 (604)
++..+++....+.....+.|..|...+..+...+.. .-.+.-..-..|..++..|.+.+..........+....
T Consensus 20 ~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~ 99 (148)
T COG2882 20 EAAIELSKIRSEKENAEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKRE 99 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777778888888888877777765442 12234556667888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 046695 538 MVGELRLKAKELEEEIEKQRVVILEGAEEKREA 570 (604)
Q Consensus 538 kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreA 570 (604)
...+-+.++..++.--++++.... .++.+||.
T Consensus 100 ~w~ek~~~~k~~e~L~er~~~e~~-~~e~~~Eq 131 (148)
T COG2882 100 IWQEKQIELKALEKLKERQKTEFL-LEENRREQ 131 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHH
Confidence 888888888888877777777665 45666664
No 386
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=51.66 E-value=2.7e+02 Score=28.02 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhHH
Q 046695 493 LKAERDRLESDVISRD 508 (604)
Q Consensus 493 Le~el~~Leqe~~s~r 508 (604)
+-..+..+..++..++
T Consensus 113 ~~~~~~~~~~~L~k~~ 128 (216)
T cd07627 113 LWQYWQSAESELSKKK 128 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 387
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=51.45 E-value=6.1e+02 Score=32.09 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=38.6
Q ss_pred HHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046695 294 ELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSE 373 (604)
Q Consensus 294 ~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e 373 (604)
.+.++|..|+..-......+++.-..+..+.++|.-+..+-+++-..-.++....|+.|+++|..++.-+-..= +.++
T Consensus 1107 ~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAy--l~ei 1184 (1439)
T PF12252_consen 1107 DITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAY--LVEI 1184 (1439)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHH--HHHH
Confidence 44555555554433333333333333333222222222222222222223334467777777777766554332 4444
Q ss_pred HHHHHHHH
Q 046695 374 RKEVSKLQ 381 (604)
Q Consensus 374 ~~ei~~Lq 381 (604)
.+++..|+
T Consensus 1185 tKqIsaLe 1192 (1439)
T PF12252_consen 1185 TKQISALE 1192 (1439)
T ss_pred HHHHHHHH
Confidence 44555554
No 388
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=51.42 E-value=3.9e+02 Score=29.86 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 046695 363 IATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWES 442 (604)
Q Consensus 363 ie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~ 442 (604)
++.+...|.++..-...|++.+..|+.++ ..++.-+-+.+.+..=...-.-++++....-+++++.+|+++|.-.+.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~---krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmee 338 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQI---KRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEE 338 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 046695 443 RGRSLE-DELRIIKTQKTELEERIVGEIEQLKASIA 477 (604)
Q Consensus 443 ~i~sLe-~eIkql~~E~~e~e~~le~eIs~lk~el~ 477 (604)
++--.. ++-+.+++.+ + .++..|+++.....
T Consensus 339 rvaYQsyERaRdIqEal---E-scqtrisKlEl~qq 370 (455)
T KOG3850|consen 339 RVAYQSYERARDIQEAL---E-SCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHH
No 389
>PF14992 TMCO5: TMCO5 family
Probab=50.81 E-value=2e+02 Score=30.72 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKT 456 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~ 456 (604)
..+++-++...+=.++...+..+++|+.+|.+...
T Consensus 12 d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~ 46 (280)
T PF14992_consen 12 DEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDH 46 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455555555556666666666666665555443
No 390
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.71 E-value=5.7e+02 Score=31.59 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhh
Q 046695 255 EEILRLKIELQKY 267 (604)
Q Consensus 255 ~ei~~lk~ele~~ 267 (604)
-++..||.+++.+
T Consensus 330 ~~~~~lK~ql~~l 342 (913)
T KOG0244|consen 330 FEMLKLKAQLEPL 342 (913)
T ss_pred HHHHHHHHHHHHH
Confidence 3688888888877
No 391
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=50.45 E-value=3.9e+02 Score=29.52 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695 375 KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl 412 (604)
++...|+.+|.--..+....+-.-..|+..+......+
T Consensus 146 KEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RH 183 (561)
T KOG1103|consen 146 KEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRH 183 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666655555555555555555555444333
No 392
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=49.82 E-value=2.3e+02 Score=26.79 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 046695 506 SRDDRMDQMEKHLQQLHMEH-TELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGA 564 (604)
Q Consensus 506 s~r~~I~emE~~L~qLr~E~-e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~a 564 (604)
.....+..++.....+..+. ..+...+..+=.-++.+-.++.....++..+=..||+..
T Consensus 59 ~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eVSddE 118 (136)
T PF04871_consen 59 ELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEVSDDE 118 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCccCCc
Confidence 33333344444444444333 566777777778888888888888888877777776654
No 393
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.67 E-value=1.5e+02 Score=24.52 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 046695 336 SLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHE 397 (604)
Q Consensus 336 ~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leee 397 (604)
.|+.-|.+- -.....++.+|..+...--.+..+|.....+...|..+|..|+.++..+..+
T Consensus 1 elQsaL~~E-irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAE-IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 394
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=49.49 E-value=4.2e+02 Score=29.64 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHH------H
Q 046695 346 SEKIQTLQNQLQLAQKDIATWKSKLNSER-KEVSKL-QERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK------A 417 (604)
Q Consensus 346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~-~ei~~L-qeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eK------a 417 (604)
..++..++..+..+....+.+..+..-.. ..-.-+ ......+++++.............+..+......-. +
T Consensus 201 ~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~ 280 (458)
T COG3206 201 DERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALRE 280 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 45677777777777777776655533333 122222 355566666666666666655555554443332222 1
Q ss_pred hHHH-HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 418 QIKA-EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 418 ~l~~-ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
.... .+..|..+...+...+..+..+.-...-++..+..++
T Consensus 281 ~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~ 322 (458)
T COG3206 281 VLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQL 322 (458)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHH
Confidence 1222 3566666666666666655555555555555555555
No 395
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=49.46 E-value=4.3e+02 Score=29.82 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSL 447 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sL 447 (604)
.|......|-+++.+++.-|.+|...|-..-=.. ....+..+...+..+..+|..+...+...
T Consensus 210 ~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp------~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 210 KLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRP------SPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666665554322111 22334444444444444444444444433
No 396
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=49.43 E-value=5.7e+02 Score=31.15 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhH
Q 046695 369 KLNSERKEVSKLQERIKSLKTSLSDR 394 (604)
Q Consensus 369 kLE~e~~ei~~LqeeI~eLk~qlq~l 394 (604)
-++-.+.+.+.|..++.-|+.++.+.
T Consensus 388 A~QplrsENaqLrRrLrilnqqlreq 413 (861)
T PF15254_consen 388 AMQPLRSENAQLRRRLRILNQQLREQ 413 (861)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 37777788888888888888877654
No 397
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=49.30 E-value=1.6e+02 Score=24.91 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 046695 358 LAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDL 401 (604)
Q Consensus 358 ~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eL 401 (604)
.-+..-+.++..++....+.+.|..+++.|..++..+.+.+..|
T Consensus 25 ~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444455555555555556566666666555555555443
No 398
>COG5570 Uncharacterized small protein [Function unknown]
Probab=49.29 E-value=76 Score=25.57 Aligned_cols=46 Identities=33% Similarity=0.494 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 514 MEKHLQQLHMEHTELIKGAEDA-------HRMVGELRLKAKELEEEIEKQRVV 559 (604)
Q Consensus 514 mE~~L~qLr~E~e~le~~l~el-------k~kl~ELK~rv~eLeEeve~qk~~ 559 (604)
++.+|..|.+.|..++..++++ ...+.+|+-+.-.|.+++|++|..
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556666666666666655553 456788998889999999998854
No 399
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=49.28 E-value=1.8e+02 Score=31.70 Aligned_cols=62 Identities=27% Similarity=0.333 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI 553 (604)
Q Consensus 492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev 553 (604)
.|.++...|.=++..++..+.+.+.+|..-.++...+...+...+-...=|..+...|.+.+
T Consensus 137 QLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 137 QLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred hhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777788888888888777777766666666666666666666665
No 400
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=49.25 E-value=1.9e+02 Score=33.08 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 313 VKALMEELRITKEKLMLSEAEIASLKQEVESN 344 (604)
Q Consensus 313 l~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl 344 (604)
|..+..+++++..+++.+..+...|+.+-+.|
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666777776666654444
No 401
>PF15294 Leu_zip: Leucine zipper
Probab=48.96 E-value=3.6e+02 Score=28.77 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 046695 546 AKELEEEIEKQRVVIL 561 (604)
Q Consensus 546 v~eLeEeve~qk~~i~ 561 (604)
..++.+-+-..+..|.
T Consensus 255 y~NMk~~ltkKn~QiK 270 (278)
T PF15294_consen 255 YRNMKEILTKKNEQIK 270 (278)
T ss_pred HHHhHHHHHhccHHHH
Confidence 3344444444444443
No 402
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.92 E-value=3.2e+02 Score=33.08 Aligned_cols=17 Identities=6% Similarity=-0.120 Sum_probs=10.5
Q ss_pred CchhHHHhHHHHHHHHH
Q 046695 27 NSKWLAENLEEMDQSVK 43 (604)
Q Consensus 27 ~~~wl~~~l~~~~~~~~ 43 (604)
+..++...|...+.-+.
T Consensus 39 ~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 39 SVEESKEIIIKLTALGS 55 (771)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55677777776665443
No 403
>COG5283 Phage-related tail protein [Function unknown]
Probab=47.24 E-value=7.2e+02 Score=31.72 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHhhhHHHHHhhHHHHHH
Q 046695 564 AEEKREAIRQLCFSLEHYRSGYISLRK 590 (604)
Q Consensus 564 aEeKreAIrQlcfslehyR~~y~~L~~ 590 (604)
..++|+.+=-..--.+||=+.|+++-.
T Consensus 277 ~k~~rdn~~k~t~q~~~m~~a~~~ta~ 303 (1213)
T COG5283 277 VKGARDNLGKVTSQGEEMSDAIQETAE 303 (1213)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 445666655554445666666665533
No 404
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=47.17 E-value=67 Score=31.19 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHhhh
Q 046695 346 SEKIQTLQNQLQLAQKDIATWKSKLNSERKE-VSKLQERIKSLKTSL 391 (604)
Q Consensus 346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~~e-i~~LqeeI~eLk~ql 391 (604)
.+.++.+....+.+.+++.-+.++...+-.- +..|.+++.+++.-+
T Consensus 85 e~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~ 131 (157)
T COG3352 85 EENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIV 131 (157)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777777777665544433 444444444444433
No 405
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=47.12 E-value=4.6e+02 Score=30.86 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGR 445 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~ 445 (604)
.++++++..=..+.++..|-+++.-++
T Consensus 397 TRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 397 TRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 777888777777777777765554444
No 406
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=46.85 E-value=1.8e+02 Score=28.35 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=30.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGE-LRLKAKELEEEIEKQR 557 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~E-LK~rv~eLeEeve~qk 557 (604)
-........++.++.+++.++.+....+.+...++-+..+..+ ++.-+.+|++.|.+.+
T Consensus 69 g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~ 128 (157)
T COG3352 69 GQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELK 128 (157)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555666666666666666666555554444322 2233555555554444
No 407
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=46.68 E-value=6.4e+02 Score=31.00 Aligned_cols=74 Identities=24% Similarity=0.242 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhhhhhhhHHHHHHH-HhhhHHH
Q 046695 520 QLHMEHTELIKGAEDAHRMVGELRLKAKELEEEI------------------EKQRVVILEGAEEKREAIRQ-LCFSLEH 580 (604)
Q Consensus 520 qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEev------------------e~qk~~i~~~aEeKreAIrQ-lcfsleh 580 (604)
++-.++++-+..++..-.+++.+....-+++.-+ +.++..=+--.++|-+||-| |=.-++|
T Consensus 1136 elfneheeeS~ifdaa~nKiakiHe~AfEieknlkeQaielank~dpeLraiead~deeitQkdee~eaiIa~ld~d~dh 1215 (1424)
T KOG4572|consen 1136 ELFNEHEEESGIFDAAGNKIAKIHEIAFEIEKNLKEQAIELANKGDPELRAIEADIDEEITQKDEETEAIIAMLDIDIDH 1215 (1424)
T ss_pred HHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHhhhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555554444444433 23322223334566666554 6678889
Q ss_pred HHhhHHHHHHHHh
Q 046695 581 YRSGYISLRKAVI 593 (604)
Q Consensus 581 yR~~y~~L~~~~~ 593 (604)
-|+.-+.+|.-|+
T Consensus 1216 ~~de~ekdreqLi 1228 (1424)
T KOG4572|consen 1216 DRDEIEKDREQLI 1228 (1424)
T ss_pred hHHHHHHHHHHHH
Confidence 9999888887665
No 408
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.40 E-value=1.4e+02 Score=29.33 Aligned_cols=11 Identities=45% Similarity=0.718 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 046695 468 EIEQLKASIAE 478 (604)
Q Consensus 468 eIs~lk~el~e 478 (604)
+|.+++.++..
T Consensus 162 ei~~lk~el~~ 172 (192)
T PF05529_consen 162 EIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 409
>PRK00846 hypothetical protein; Provisional
Probab=46.30 E-value=1.1e+02 Score=26.47 Aligned_cols=12 Identities=17% Similarity=0.157 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 046695 396 HEVRDLKMAVSD 407 (604)
Q Consensus 396 eeI~eLk~~l~d 407 (604)
.+|.+|+..+..
T Consensus 13 ~Ri~~LE~rlAf 24 (77)
T PRK00846 13 ARLVELETRLSF 24 (77)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 410
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=46.24 E-value=3.3e+02 Score=27.82 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=9.2
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 046695 503 DVISRDDRMDQMEKHLQQ 520 (604)
Q Consensus 503 e~~s~r~~I~emE~~L~q 520 (604)
+=..++.-+..+++.+..
T Consensus 174 EPwkRrRLv~~fe~~v~~ 191 (207)
T PF05546_consen 174 EPWKRRRLVKSFEEKVKE 191 (207)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 444555555555555543
No 411
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=45.63 E-value=4.7e+02 Score=29.13 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=39.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHH
Q 046695 526 TELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLR 589 (604)
Q Consensus 526 e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~ 589 (604)
..+-..+..+...+...=.....+..+++..+. .....=..|-+||..-+.|-+.|..|.
T Consensus 293 ~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~----~i~~~~~~l~~L~~~Y~~F~~aY~~LL 352 (412)
T PF04108_consen 293 SEALEELRKFGERLPSYLAAFHDFEERWEEEKE----SIQAYIDELEQLCEFYEGFLSAYDSLL 352 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555666666655554 445566789999999999999999974
No 412
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.43 E-value=2.1e+02 Score=25.14 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHh-HHHHHHhHHHHHHHHHHHHHH
Q 046695 396 HEVRDLKMAVSDAEQKIFPEKAQ-IKAEILGLYEEKACLVEQLRE 439 (604)
Q Consensus 396 eeI~eLk~~l~d~eekls~eKa~-l~~ei~~LqEk~~sLe~eL~e 439 (604)
.++..|+..+...-..++.-|.+ +..++..+..+...+..+-..
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~ 93 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQ 93 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655555 445555555554444444443
No 413
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.83 E-value=1.7e+02 Score=28.26 Aligned_cols=29 Identities=38% Similarity=0.617 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 046695 375 KEVSKLQERIKSLKTSLSDRDHEVRDLKM 403 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~ 403 (604)
.++..+.+++..+++++..++..|.+|+.
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334445555555555555555555544
No 414
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=44.58 E-value=5.1e+02 Score=29.26 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 046695 515 EKHLQQLHMEHTELIKGA 532 (604)
Q Consensus 515 E~~L~qLr~E~e~le~~l 532 (604)
++-+..|+..+.++..-+
T Consensus 298 edL~~DL~eDl~k~~etf 315 (424)
T PF03915_consen 298 EDLLSDLKEDLKKASETF 315 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555444444433
No 415
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.95 E-value=2.4e+02 Score=32.23 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=6.2
Q ss_pred HHHHhhhhhHHHHHHHH
Q 046695 385 KSLKTSLSDRDHEVRDL 401 (604)
Q Consensus 385 ~eLk~qlq~leeeI~eL 401 (604)
..++.+++.+...|.+|
T Consensus 119 ~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 119 EQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 416
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=43.78 E-value=7.7 Score=45.27 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
.+..+...+..|+.+.......+..+...|..+-.++
T Consensus 143 ~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L 179 (619)
T PF03999_consen 143 ELEELRQHLQRLQEEKERRLEEVRELREEIISLMEEL 179 (619)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555544444445555555554444
No 417
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.65 E-value=3.6e+02 Score=27.25 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 046695 330 SEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAV 405 (604)
Q Consensus 330 se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l 405 (604)
++.+...+...+..- +.+...|+..+...+..-..+...-...+.++..|..+-.....+|..++..|..|+...
T Consensus 110 LeAQka~~eR~ia~~-~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 110 LEAQKAQLERLIAES-EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334443333333322 446666677777776666666655666666666666666666666666666666655443
No 418
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.31 E-value=2.5e+02 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=8.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 046695 504 VISRDDRMDQMEKHLQQLHMEHT 526 (604)
Q Consensus 504 ~~s~r~~I~emE~~L~qLr~E~e 526 (604)
+......+..+++.+..++.+..
T Consensus 96 ~~~l~~~~~~l~~~~~~~~~~~~ 118 (129)
T cd00890 96 LETLEKQIEKLEKQLEKLQDQIT 118 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 419
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=43.07 E-value=4e+02 Score=27.54 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhhhhHHHHHHHHHH
Q 046695 288 VNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQ------------EVESNRSEKIQTLQNQ 355 (604)
Q Consensus 288 ~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~------------EL~sl~~~kieqLq~e 355 (604)
++-|-.+...-|..|+.++-.+...+..+...-+.+...+.....-+..|-. .+..+ ..++..+.++
T Consensus 20 ~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev-~~ki~~~~~~ 98 (234)
T cd07664 20 SDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEV-EEKIDQLHQD 98 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHHH-----HHHHHHHhhhHHH-----------------HHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHH
Q 046695 356 LQLAQK-----DIATWKSKLNSER-----------------KEVSKLQERIKSL-----KTSLSDRDHEVRDLKMAVSDA 408 (604)
Q Consensus 356 Le~~q~-----eie~i~~kLE~e~-----------------~ei~~LqeeI~eL-----k~qlq~leeeI~eLk~~l~d~ 408 (604)
.....- -+.+|-.-+...+ ..+.+.+..+..+ ..+++.++.+|.+++..+..+
T Consensus 99 qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a 178 (234)
T cd07664 99 QAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQG 178 (234)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhchHHHhHHHHHHhH-HHHHHHHHHH-HHHHHHhhhhHHHHHHHHHH
Q 046695 409 EQKIFPEKAQIKAEILGL-YEEKACLVEQ-LREWESRGRSLEDELRIIKT 456 (604)
Q Consensus 409 eekls~eKa~l~~ei~~L-qEk~~sLe~e-L~ele~~i~sLe~eIkql~~ 456 (604)
...|...+...+.++.+. .+++.-++.- ..|++..+..-..-|.-|..
T Consensus 179 ~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~ 228 (234)
T cd07664 179 ERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEA 228 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 420
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=42.50 E-value=3e+02 Score=30.07 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 492 SLKAERDRLESDVISRDDRMDQMEKHL 518 (604)
Q Consensus 492 ~Le~el~~Leqe~~s~r~~I~emE~~L 518 (604)
.-.+.++.++.++..++..+.+|+.-+
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 345677788888888888888887554
No 421
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=42.22 E-value=2.2e+02 Score=24.33 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIA 477 (604)
Q Consensus 465 le~eIs~lk~el~ 477 (604)
+.=+|--+...+.
T Consensus 19 LKLrI~fLee~l~ 31 (75)
T PF07989_consen 19 LKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 422
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.73 E-value=4.2e+02 Score=27.49 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHhhhHHHHHhhHHHHHHHHh
Q 046695 535 AHRMVGELRLKAKELEEEIEKQRVVILE--GAEEKREAIRQLCFSLEHYRSGYISLRKAVI 593 (604)
Q Consensus 535 lk~kl~ELK~rv~eLeEeve~qk~~i~~--~aEeKreAIrQlcfslehyR~~y~~L~~~~~ 593 (604)
+...+.+|+.++..++-++|.+-..--- ..-.+-+.|-.|--+++.++-|...|..++-
T Consensus 127 l~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR 187 (233)
T PF04065_consen 127 LKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLR 187 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777754433221 1224566777888889999999999988773
No 423
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=41.70 E-value=1.9e+02 Score=23.99 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 495 AERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIE 554 (604)
Q Consensus 495 ~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve 554 (604)
..+..++..+.+.++.|.+|+-+++.+-. .....+..++...+..+..+...++
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555555555544421 2334455566666666666666553
No 424
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=41.61 E-value=3.9e+02 Score=27.09 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH-----------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHH
Q 046695 356 LQLAQKDIATWKSKLNSERKEVSKL-----------QERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEIL 424 (604)
Q Consensus 356 Le~~q~eie~i~~kLE~e~~ei~~L-----------qeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~ 424 (604)
+..-+.-+......++....++..| .--...|...+..++.++..++..+.+..-.-...+.....++.
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~ 178 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELR 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHH
Q 046695 425 GLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELE 462 (604)
Q Consensus 425 ~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e 462 (604)
.|..+-..+-.+.-.++.-|..|+.+|.+++.+..+.+
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 425
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=41.36 E-value=3.2e+02 Score=26.01 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 315 ALMEELRITKEKLMLSEAEIASLKQEVES 343 (604)
Q Consensus 315 ~L~eEL~~~~eeL~~se~eI~~Lk~EL~s 343 (604)
.++..+..+..+|.....+|+.++..+.+
T Consensus 5 ~a~rny~~a~aeL~~a~~~I~~~q~r~a~ 33 (136)
T PF11570_consen 5 VAERNYEAARAELDQADEDIATLQERQAS 33 (136)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777777775544
No 426
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=41.31 E-value=90 Score=37.37 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHH
Q 046695 512 DQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRK 590 (604)
Q Consensus 512 ~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~ 590 (604)
..+.+-++.+....-.+-.........+.+++.++.+++++++..+..+-.....=++.|+.+.--+.-.+.-|+-+..
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 282 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNK 282 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444443333333333445566666666666666666655555554444444455444445555555665543
No 427
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=41.25 E-value=5.2e+02 Score=28.39 Aligned_cols=17 Identities=47% Similarity=0.681 Sum_probs=9.5
Q ss_pred hHHHHHHhhhHHHHHHH
Q 046695 189 QGLQRKVNELETELREA 205 (604)
Q Consensus 189 ~~l~~~~~~le~e~~~~ 205 (604)
.-|...|.+|..|+...
T Consensus 97 ~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 97 QRLRREVEELKEELEKR 113 (388)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555666666666543
No 428
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=41.04 E-value=2.5e+02 Score=24.58 Aligned_cols=100 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Q 046695 307 LDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKE-VSKLQERIK 385 (604)
Q Consensus 307 ~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~e-i~~LqeeI~ 385 (604)
..+...+..+......+...+......+..++......+..-...+..-+..+..+...+-.+++....+ ...|...+.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~ 82 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLE 82 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 046695 386 SLKTSLSDRDHEVRDLKMAVS 406 (604)
Q Consensus 386 eLk~qlq~leeeI~eLk~~l~ 406 (604)
.+...+..+..-+...+..+.
T Consensus 83 ~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 83 SLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 429
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.99 E-value=2e+02 Score=28.23 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e 409 (604)
.+.++++.++.++...+.++..|+.+.+...
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555545555555544444433
No 430
>PF15456 Uds1: Up-regulated During Septation
Probab=40.87 E-value=3.1e+02 Score=25.68 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 046695 427 YEEKACLVEQLREWESRGRSLEDELR 452 (604)
Q Consensus 427 qEk~~sLe~eL~ele~~i~sLe~eIk 452 (604)
++++..|++++..+..++..+...+.
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555555554444
No 431
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.68 E-value=5.9e+02 Score=28.84 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHhhhccc
Q 046695 253 SNEEILRLKIELQKYNSS 270 (604)
Q Consensus 253 ~e~ei~~lk~ele~~~~~ 270 (604)
.+.-+..++.+++.+..+
T Consensus 150 ~da~~qq~~~ele~~d~~ 167 (446)
T KOG4438|consen 150 LDAKYQQALKELERFDED 167 (446)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 555566666666666444
No 432
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=40.58 E-value=1.3e+02 Score=35.23 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKA 495 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~ 495 (604)
.++.+|..++.........++.+.+-......
T Consensus 327 ~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~ 358 (619)
T PF03999_consen 327 LHEEEIERLKEEYESRKPILELVEKWESLWEE 358 (619)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888877777766654444433
No 433
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=40.45 E-value=10 Score=23.54 Aligned_cols=9 Identities=44% Similarity=1.819 Sum_probs=7.2
Q ss_pred cccccccCC
Q 046695 15 HSWWWDSHI 23 (604)
Q Consensus 15 ~~~~~~sh~ 23 (604)
..|||..|-
T Consensus 7 ~nwwwtahp 15 (18)
T PF08055_consen 7 QNWWWTAHP 15 (18)
T ss_pred cceeeeccc
Confidence 469999884
No 434
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=40.36 E-value=1e+02 Score=27.19 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046695 499 RLESDVISRDDRMDQMEKHLQQLHME 524 (604)
Q Consensus 499 ~Leqe~~s~r~~I~emE~~L~qLr~E 524 (604)
.++.+..+..+.+...|++|..|+++
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 44455555566666666666666664
No 435
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=40.31 E-value=1.4e+02 Score=27.20 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 046695 310 DNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIA 364 (604)
Q Consensus 310 ~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie 364 (604)
+.+...|.++|+. .+..|-.+..|+.++ ..+-.+|..++..++.+++
T Consensus 25 Q~k~~~L~e~Lk~-------ke~~LRk~eqE~dSL-~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 25 QAKNAELKEQLKE-------KEQALRKLEQENDSL-TFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 444444445555555 4455666666666665555
No 436
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=40.21 E-value=3.2e+02 Score=25.60 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHH
Q 046695 382 ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTEL 461 (604)
Q Consensus 382 eeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~ 461 (604)
..+..+-.+++.+...+......+......-.............+...+..|......+...+......+.......
T Consensus 33 ~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~--- 109 (213)
T cd00176 33 ESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQ--- 109 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHH
Q 046695 462 EERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAE-----DAH 536 (604)
Q Consensus 462 e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~-----elk 536 (604)
..-.+...+..-+......|.....-. --..+..+..++..+...|......+..+......+..... .+.
T Consensus 110 --~~~~~~~~l~~wl~~~e~~l~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 185 (213)
T cd00176 110 --QFFRDADDLEQWLEEKEAALASEDLGK--DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIE 185 (213)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 537 RMVGELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 537 ~kl~ELK~rv~eLeEeve~qk~~i 560 (604)
..+..++.+-..+...+......+
T Consensus 186 ~~l~~l~~~~~~l~~~~~~~~~~L 209 (213)
T cd00176 186 EKLEELNERWEELLELAEERQKKL 209 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 437
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=40.10 E-value=73 Score=33.99 Aligned_cols=41 Identities=34% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 046695 523 MEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEG 563 (604)
Q Consensus 523 ~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~ 563 (604)
.+.+.+...++.+.++..+||.++.+|+.+|...|-.|++.
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666777778888888888888888888777764
No 438
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.01 E-value=64 Score=39.37 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=7.1
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 046695 390 SLSDRDHEVRDLKMAVSDA 408 (604)
Q Consensus 390 qlq~leeeI~eLk~~l~d~ 408 (604)
+..+...++.++.+..++.
T Consensus 450 ~~~~~~~k~~e~~~~~s~s 468 (847)
T KOG0998|consen 450 QKDTVQDKLNELDAQKSQS 468 (847)
T ss_pred ccchhhhhhhhhhhhhhHH
Confidence 3333333333333333333
No 439
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=39.88 E-value=5e+02 Score=27.81 Aligned_cols=59 Identities=22% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHHHHHHHhcCCCcccc
Q 046695 529 IKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYISLRKAVIGHKGVAVL 601 (604)
Q Consensus 529 e~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~L~~~~~gh~~~~~~ 601 (604)
.-...-++.+-..|-..+.++-.+- -..|.+.-+=|+-|-| -.++|--+|-|.+|+|++
T Consensus 159 ic~~EgLkak~a~LafDLkamideK---EELimERDa~kcKa~R-----------LnhELfvaLnadkrhpr~ 217 (389)
T KOG4687|consen 159 ICAHEGLKAKCAGLAFDLKAMIDEK---EELIMERDAMKCKAAR-----------LNHELFVALNADKRHPRA 217 (389)
T ss_pred HHHHHHHHHHhhhhhhHHHHHhchH---HHHHHHHHHHHHHHHH-----------hhhHHHHHHcCCCCCchh
Confidence 3334445556666665555543333 4457777777777765 245677788888887653
No 440
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=39.73 E-value=5.2e+02 Score=27.96 Aligned_cols=116 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 046695 396 HEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKAS 475 (604)
Q Consensus 396 eeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~e 475 (604)
+++..+...+.........--..++.+|..-.+++++-++-|. .++.++-.+.+.+..++ . .++..-.++.-.
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lN---nqL~~l~q~fr~a~~~l---s-e~~e~y~q~~~g 302 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLN---NQLASLMQKFRRATDTL---S-ELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---H-HHHHHHHHhccc
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH-------------HHHHHHHhHHHHHHHHHHHH
Q 046695 476 IAERDKHIENLNRSLDSLKAERD-------------RLESDVISRDDRMDQMEKHL 518 (604)
Q Consensus 476 l~e~~~~Le~L~~ek~~Le~el~-------------~Leqe~~s~r~~I~emE~~L 518 (604)
+...++.|..+..+.+.+++++. .+++-+..+.....+|+-++
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~i 358 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQI 358 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhhe
No 441
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.17 E-value=3.8e+02 Score=26.17 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAER 479 (604)
Q Consensus 467 ~eIs~lk~el~e~ 479 (604)
.+|..++.+|+..
T Consensus 138 ~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 138 TEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 442
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.07 E-value=3.4e+02 Score=29.64 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=10.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 046695 364 ATWKSKLNSERKEVSKLQERIKSL 387 (604)
Q Consensus 364 e~i~~kLE~e~~ei~~LqeeI~eL 387 (604)
..+...+...+.++..|...++.+
T Consensus 35 ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 35 DKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444
No 443
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.52 E-value=1.6e+02 Score=30.66 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=9.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHh
Q 046695 422 EILGLYEEKACLVEQLREWESR 443 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~ 443 (604)
++..++.-...|=.+++|++.=
T Consensus 115 Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 115 EVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 3334444444444445555443
No 444
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.36 E-value=2.6e+02 Score=24.02 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046695 533 EDAHRMVGELRLKAKELEEEIEK 555 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~ 555 (604)
..++..+..+..++..+.+++.+
T Consensus 67 ~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 67 VNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444433
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.09 E-value=7.3e+02 Score=29.17 Aligned_cols=26 Identities=4% Similarity=0.102 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695 490 LDSLKAERDRLESDVISRDDRMDQME 515 (604)
Q Consensus 490 k~~Le~el~~Leqe~~s~r~~I~emE 515 (604)
+..+...+..|...+...-..++..+
T Consensus 711 ~~~iqsiL~~L~~~i~~~~k~VK~i~ 736 (741)
T KOG4460|consen 711 RKCIQSILKELGEHIREMVKQVKDIR 736 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333333333
No 446
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=38.07 E-value=3.9e+02 Score=26.05 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
=...+++.++..|..++++...+-.-+...+.+|...-+..++..+.-.+|-..+-.|-.
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~ 140 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVS 140 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888888888888888877777777766665555554444433
No 447
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=37.79 E-value=2.4e+02 Score=23.61 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695 469 IEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQME 515 (604)
Q Consensus 469 Is~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE 515 (604)
+..++.+=.-+...+..+..++..+.++...+.+.+..+=..+..||
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33344444444445555555555566666655555555555554443
No 448
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=37.04 E-value=7.2e+02 Score=28.84 Aligned_cols=38 Identities=26% Similarity=0.185 Sum_probs=17.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 420 KAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 420 ~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
...+.....+...+.+++.+...-+..++ .|..+...+
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l 112 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEENEQLLEVLE-QLQEIDELL 112 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33444444555555555555444444333 344444444
No 449
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.76 E-value=3.8e+02 Score=25.53 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 425 GLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 425 ~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
++......++..+.-....+..|+.+|...+..+
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~l 57 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEAAL 57 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433334444444444443333
No 450
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=36.62 E-value=3.8e+02 Score=25.46 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 046695 393 DRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 393 ~leeeI~eLk~~l~d~eekl 412 (604)
.+-.-|+.++.++-.+..-+
T Consensus 16 ~lFa~VSalKaAY~qLQ~Ah 35 (131)
T PF04859_consen 16 KLFATVSALKAAYAQLQQAH 35 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444433
No 451
>PRK14148 heat shock protein GrpE; Provisional
Probab=36.38 E-value=3.1e+02 Score=27.69 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=8.3
Q ss_pred HHHHHHHHhcC
Q 046695 585 YISLRKAVIGH 595 (604)
Q Consensus 585 y~~L~~~~~gh 595 (604)
|++|..+|..|
T Consensus 127 ~k~l~~vL~k~ 137 (195)
T PRK14148 127 AKMLVDILKKN 137 (195)
T ss_pred HHHHHHHHHHC
Confidence 67777888766
No 452
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.06 E-value=2.3e+02 Score=29.62 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELI 529 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le 529 (604)
|...++.|..++..+|+.|+++.-+|.+++..-..+-
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555566555555555444333
No 453
>PTZ00464 SNF-7-like protein; Provisional
Probab=35.58 E-value=5e+02 Score=26.50 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 046695 430 KACLVEQLREWESRGR 445 (604)
Q Consensus 430 ~~sLe~eL~ele~~i~ 445 (604)
+..++..+..+...+.
T Consensus 70 KK~~E~ql~~l~~q~~ 85 (211)
T PTZ00464 70 KRMYQNQQDMMMQQQF 85 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444443333333
No 454
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.54 E-value=4.9e+02 Score=26.39 Aligned_cols=193 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 046695 306 SLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIK 385 (604)
Q Consensus 306 l~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~ 385 (604)
+.-+..+-......+..+...+.....+|..=..++.+.=...+..|++.+-...+.+..++.+|....
T Consensus 6 l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~----------- 74 (206)
T PF14988_consen 6 LEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK----------- 74 (206)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHhhhHHHH
Q 046695 386 SLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQL--REWESRGRSLEDELRIIKTQKTELEE 463 (604)
Q Consensus 386 eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL--~ele~~i~sLe~eIkql~~E~~e~e~ 463 (604)
.+.......+.+|..|+..+......+ .+.++.--.++..+...|+.++ ..+..-......++.+-...+ +
T Consensus 75 ~~~~~k~~qe~eI~~Le~e~~~~~~e~---~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~al---e- 147 (206)
T PF14988_consen 75 EFRRLKEQQEREIQTLEEELEKMRAEH---AEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQAL---E- 147 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHH---H-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH 525 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~ 525 (604)
......+...-..+.++-..|...+..|.+++..+......++++-.+|+.+.
T Consensus 148 ---------~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq 200 (206)
T PF14988_consen 148 ---------LAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQ 200 (206)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 455
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.54 E-value=8.9e+02 Score=29.45 Aligned_cols=116 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 402 KMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDK 481 (604)
Q Consensus 402 k~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~ 481 (604)
..-+..+.+-+......+..-+..+......++.+...++.....++...+.++.+...++ +.....+.....+...
T Consensus 501 ~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~---~~~~~~~~~~~~~a~~ 577 (782)
T PRK00409 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ---EEEDKLLEEAEKEAQQ 577 (782)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHHHH
Q 046695 482 HIENLNRSLDSLKAERDR---------LESDVISRDDRMDQMEKHLQQ 520 (604)
Q Consensus 482 ~Le~L~~ek~~Le~el~~---------Leqe~~s~r~~I~emE~~L~q 520 (604)
.|....++...+-.++.. ..+.....+..++.+...+..
T Consensus 578 ~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 578 AIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhhhhh
No 456
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=35.50 E-value=6.4e+02 Score=27.79 Aligned_cols=250 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHhhhhcHHHHHHHHHHHhhhccccchhhhhhccCChhhhhhhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHH
Q 046695 245 LANEKIHISNEEILRLKIELQKYNSSETNNYLQADFGSPAEINVNMWDAELQEGINGLETPSLDLDNKVKALMEELRITK 324 (604)
Q Consensus 245 ~~n~~~~~~e~ei~~lk~ele~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~ 324 (604)
..|.+|..+=.+|...|.+|+.. +. .+..+|..|......+..-+..+..-+..+.
T Consensus 43 ~~~~~L~~Ri~di~~wk~eL~~~------------------l~------~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ 98 (384)
T PF03148_consen 43 DSNKRLRQRIRDIRFWKNELERE------------------LE------ELDEEIDLLEEEKRRLEKALEALRKPLSIAQ 98 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HH------HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q ss_pred HHHH-----------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------------
Q 046695 325 EKLM-----------------LSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSER------------- 374 (604)
Q Consensus 325 eeL~-----------------~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~------------- 374 (604)
+.|. .+-+++..+.+-...+ ...+++...++..+..-...+...+..-.
T Consensus 99 ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL-~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~ 177 (384)
T PF03148_consen 99 ECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLL-QRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLN 177 (384)
T ss_pred HHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred ------------------------------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHH
Q 046695 375 ------------------------------KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEIL 424 (604)
Q Consensus 375 ------------------------------~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~ 424 (604)
.-+...+.++..-..=......-+...-..+...-...
T Consensus 178 ~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~v------------ 245 (384)
T PF03148_consen 178 NNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAV------------ 245 (384)
T ss_pred CccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------
Q 046695 425 GLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKA--------- 495 (604)
Q Consensus 425 ~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~--------- 495 (604)
...|...+.+...-...|+.++.+...++ . .++..|..|...|.+...-|.-.....+.=..
T Consensus 246 -----n~al~~Ri~et~~ak~~Le~ql~~~~~ei---~-~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD 316 (384)
T PF03148_consen 246 -----NAALRKRIHETQEAKNELEWQLKKTLQEI---A-EMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRD 316 (384)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhHHHHH---H-HHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHh
Q ss_pred --------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046695 496 --------ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVG 540 (604)
Q Consensus 496 --------el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ 540 (604)
+|..|..-+..+...+.+.+..++.|..-+..|+..+..-...+.
T Consensus 317 ~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~ 369 (384)
T PF03148_consen 317 PPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLF 369 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 457
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.47 E-value=2.3e+02 Score=29.64 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 046695 330 SEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR 394 (604)
Q Consensus 330 se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~l 394 (604)
.+..+..+...+..- ...+-+|+.+|+.++.++..++.++|...-++..++++-..+-.++..+
T Consensus 38 ~~~r~~~le~~~~~~-~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 38 VEDRVTQLERISNAH-SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred hHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.24 E-value=3e+02 Score=26.27 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDA 535 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~el 535 (604)
.+..+-.....++..|.......+.|+.++...+..+..-...|++|++.+..+..+........+.+
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
No 459
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=35.03 E-value=2.4e+02 Score=31.51 Aligned_cols=68 Identities=24% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 046695 333 EIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSK----LNSERKEVSKLQERIKSLKTSLSDRDHEVRDL 401 (604)
Q Consensus 333 eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~k----LE~e~~ei~~LqeeI~eLk~qlq~leeeI~eL 401 (604)
.|..+.++.-.+ ...+++|+.+.+.+.+.|...... .+....++..|.++|+.+.+++..++.++.++
T Consensus 31 ~i~~ld~~~r~~-~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 31 KLIALDDERKKL-LSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=34.94 E-value=3.7e+02 Score=24.83 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHhhhchHHHh-
Q 046695 346 SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR------DHEVRDLKMAVSDAEQKIFPEKAQ- 418 (604)
Q Consensus 346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~l------eeeI~eLk~~l~d~eekls~eKa~- 418 (604)
..+...++.+|+.+. -.+...++.+|+..|.++++...+. +.+|.+.+..|...+..+...+..
T Consensus 23 ~~K~~~Ie~qI~~Ak---------~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G 93 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAK---------AHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKG 93 (115)
T ss_pred HHHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLRE 439 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~e 439 (604)
-...|.+.+.++.--+.+|..
T Consensus 94 ~~~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 94 DSDKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHhh
No 461
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.53 E-value=1.3e+02 Score=34.28 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh
Q 046695 358 LAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ 418 (604)
Q Consensus 358 ~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~ 418 (604)
..+.-++..+.+..+..+++..|+.+++.+..+.++++.+|++|+..+..+..++....+.
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
No 462
>COG5283 Phage-related tail protein [Function unknown]
Probab=34.10 E-value=1.1e+03 Score=30.14 Aligned_cols=178 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHH
Q 046695 388 KTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEER 464 (604)
Q Consensus 388 k~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~ 464 (604)
...+..+...|.+-.......+.+...-++. -+..+..+.+.+...+.-+. .+..++..+..-. . .
T Consensus 21 ~~~in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~-------~~kqe~~evn~at---~-a 89 (1213)
T COG5283 21 VKNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYE-------DLKQEVKEVNRAT---Q-A 89 (1213)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---H-H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR- 543 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK- 543 (604)
.++....+...+-..+..+..+..+.+.....+..-..++..+...|...++++....+........+..+...+..++
T Consensus 90 ~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n~~g~a~~~~~gl~e 169 (1213)
T COG5283 90 SKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRE 169 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHhhhhHhH
Q ss_pred ---HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHHHHhhHHH
Q 046695 544 ---LKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEHYRSGYIS 587 (604)
Q Consensus 544 ---~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfslehyR~~y~~ 587 (604)
.+...+.+.+++.+.+-...+ .++...+-+|-+
T Consensus 170 sf~~q~~aln~q~~~t~k~~~~~~-----------~~l~e~qq~~~q 205 (1213)
T COG5283 170 SFGRQTEALNKQLERTKKVADALT-----------YVLDEAQQKLSQ 205 (1213)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhh-----------hhhHHHHHHHHH
No 463
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.99 E-value=3.7e+02 Score=24.51 Aligned_cols=83 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 046695 431 ACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDK----------------------------- 481 (604)
Q Consensus 431 ~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~----------------------------- 481 (604)
..+...+..+...++.+..++..+...+ . +...+...+..+..
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~---~-----e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v 73 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAI---A-----EYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLV 73 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEE
Q ss_pred --------------HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 482 --------------HIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQL 521 (604)
Q Consensus 482 --------------~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qL 521 (604)
.++-+.+.+..++..+..+...+..+...++.+...+.++
T Consensus 74 ~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 74 DLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 464
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.88 E-value=3.9e+02 Score=27.13 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHH
Q 046695 312 KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWK-------SKLNSERKEVSKLQERI 384 (604)
Q Consensus 312 kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~-------~kLE~e~~ei~~LqeeI 384 (604)
+...|+.||..+...|...+........--.+-..--..++++.|+=.+..+.... ..+...+..+.-+++++
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHH
Q 046695 385 KSLKTSLSDRDHEVRDLKM 403 (604)
Q Consensus 385 ~eLk~qlq~leeeI~eLk~ 403 (604)
..|..=+...+.++..|++
T Consensus 177 ~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHhcC
No 465
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=33.88 E-value=7.3e+02 Score=27.97 Aligned_cols=264 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhhchHHHHhhhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHH
Q 046695 288 VNMWDAELQEGINGLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQ-LAQKDIATW 366 (604)
Q Consensus 288 ~~~~~~~Lq~~I~eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe-~~q~eie~i 366 (604)
||.|--.+...+..+..++..+......+...|..+..-+.....=+..... ...+.-..++++ ...++.+-|
T Consensus 82 i~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~Rek------R~~~dlv~D~Ve~EL~kE~eli 155 (421)
T KOG2685|consen 82 VNFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREK------RQGIDLVHDEVETELHKEVELI 155 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhh------cccchhhccccHHHHHhHHHHH
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----------------------HHHhhhchHHHh---HHH
Q 046695 367 KSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVS----------------------DAEQKIFPEKAQ---IKA 421 (604)
Q Consensus 367 ~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~----------------------d~eekls~eKa~---l~~ 421 (604)
..-.+-...-+....++|.....-...++..+.+-.++++ ..........+= .+.
T Consensus 156 ~~~q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~s~e~W~~fs~~ 235 (421)
T KOG2685|consen 156 ENIQELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYEIDEKCLALNNNSPNISYKPDPTRVPPNSSSPESWAKFSGD 235 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhheechhhhhhcCCCCCeeccCCCccCCCCCCCHHHHHHhcch
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE 501 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le 501 (604)
-+-.-+....+--.=-..+..-+..+...|+.=.... +..+...|..++.....+..++.....+....+..|..++
T Consensus 236 nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~v---e~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le 312 (421)
T KOG2685|consen 236 NLDRAERERAASAALREALDQTLRETANDLRTQADAV---ELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALE 312 (421)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHH-----------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 502 SDVISRDDRMDQMEKHLQQ-----------------LHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 502 qe~~s~r~~I~emE~~L~q-----------------Lr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i 560 (604)
..+..+..-++-....|.. |..|...+..-+..++.++.+-+..+..|...--++-.-|
T Consensus 313 ~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di 388 (421)
T KOG2685|consen 313 RAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDI 388 (421)
T ss_pred HHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.86 E-value=1.5e+02 Score=24.11 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSL 387 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eL 387 (604)
++..++.++......+..++.+++.+...+.++.+.++.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.84 E-value=3.7e+02 Score=24.49 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------------------------------
Q 046695 444 GRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLD-------------------------------- 491 (604)
Q Consensus 444 i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~-------------------------------- 491 (604)
++.+...+.++..++ . .+..++..+...+.+...-++.+..=..
T Consensus 1 ~~~l~~~~~~l~~~i---~-~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG 76 (129)
T cd00584 1 LEQLAAQLQVLQQEI---E-ELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLG 76 (129)
T ss_pred CHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcC
Q ss_pred -------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046695 492 -------SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDA 535 (604)
Q Consensus 492 -------~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~el 535 (604)
.+.+.+.-+...+......+..+++.+..++.+...+...+...
T Consensus 77 ~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 77 TGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 468
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.84 E-value=4.4e+02 Score=27.44 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-----HHHHHHHhhhHHH---------
Q 046695 515 EKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEK-----REAIRQLCFSLEH--------- 580 (604)
Q Consensus 515 E~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeK-----reAIrQlcfsleh--------- 580 (604)
...+..+..++..+...+.+++.++..+.....|.++|.++.+..+..-|=++ -..|--|+-.|.|
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~ 145 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQ 145 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHH
Q ss_pred -----HHhhHHHHHHHHhcC
Q 046695 581 -----YRSGYISLRKAVIGH 595 (604)
Q Consensus 581 -----yR~~y~~L~~~~~gh 595 (604)
|.--|+.|..+|..|
T Consensus 146 ~l~~Gve~i~k~l~~~L~k~ 165 (238)
T PRK14143 146 ALHRSYQGLYKQLVDVLKRL 165 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHC
No 469
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.72 E-value=2.6e+02 Score=27.68 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046695 380 LQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKT 456 (604)
Q Consensus 380 LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~ 456 (604)
+..+++.+..+++.+..+|.+|+..+......+--.. +=.=+.++.++-.+++.|+.+|.+.+.
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYq-------------ll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQ-------------LLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHh
No 470
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=33.38 E-value=4.1e+02 Score=24.86 Aligned_cols=168 Identities=25% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 046695 394 RDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKAC-LVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQL 472 (604)
Q Consensus 394 leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~s-Le~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~l 472 (604)
+...+..+...+..+...+...-..+...+..-.+.+.. |...+..+...+...-..+.. .+...+..+
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~----------~i~~~~~~~ 72 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKE----------RIEERIEEL 72 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 473 KASIAERDKHIEN-LNRSLDSLKAERDRLESDVISR-DDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELE 550 (604)
Q Consensus 473 k~el~e~~~~Le~-L~~ek~~Le~el~~Leqe~~s~-r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLe 550 (604)
...+......+.. +......+...+.....++... ...+..+...|...-.+...... ..+......+.....++.
T Consensus 73 ~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~--~~l~~~~~~l~~~~~~~~ 150 (202)
T PF01442_consen 73 KNSLDSSTSELDESLSERAEELKERLEARAEELESRLEEEVDELEESLESRSEELKEKIE--ERLEELSEELTERAEELE 150 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHhHhhhHHHHH
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHH
Q 046695 551 EEIEKQRVVILEGAEEKREAIRQ 573 (604)
Q Consensus 551 Eeve~qk~~i~~~aEeKreAIrQ 573 (604)
..+...-..+.+.-+++=++|..
T Consensus 151 ~~i~~~~~~l~~~l~~~~~~l~~ 173 (202)
T PF01442_consen 151 AKISERLEELRESLEEKAEELKE 173 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 471
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=33.35 E-value=5.6e+02 Score=26.75 Aligned_cols=81 Identities=14% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q 046695 444 GRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKH----------------------------------------- 482 (604)
Q Consensus 444 i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~----------------------------------------- 482 (604)
+..++.++..+.+++ + +.+.-|.+|..+|......
T Consensus 1 l~~lq~~l~~l~~~~---~-~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~ 76 (248)
T PF08172_consen 1 LEELQKELSELEAKL---E-EQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGG 76 (248)
T ss_pred CHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCC
Q ss_pred ----HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 483 ----IENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTEL 528 (604)
Q Consensus 483 ----Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~l 528 (604)
|--+.+++|..+....+|++++......+..+..++..|+..=.+|
T Consensus 77 ~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 77 DSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=33.33 E-value=5.1e+02 Score=25.99 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 451 LRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 451 Ikql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
+.+++.++ . +.+.-+......|......+.....-.......+..|..-+...+..+...+.-...-+.+...-..
T Consensus 69 veqLe~ev---~-EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~q 144 (188)
T PF05335_consen 69 VEQLEQEV---R-EAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQ 144 (188)
T ss_pred HHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 531 GAEDAHRMVGELRLKAKELEEEIEKQR 557 (604)
Q Consensus 531 ~l~elk~kl~ELK~rv~eLeEeve~qk 557 (604)
.+...+.++..|..++..-...+++.|
T Consensus 145 LLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 145 LLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.25 E-value=95 Score=37.93 Aligned_cols=141 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 046695 375 KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRII 454 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql 454 (604)
..+..+......+..+..+...++.++.+..++..+.+ .-.+.++...-.-+..+..++..+...+...
T Consensus 435 ~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~s~s~~~~-----------~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~ 503 (847)
T KOG0998|consen 435 NELSNLASTSQQLPAQKDTVQDKLNELDAQKSQSKEKF-----------STTRKKKQEEPQWISSLDNDLNLLPLQLSND 503 (847)
T ss_pred hhhhhcchhhhccccccchhhhhhhhhhhhhhHHHhhh-----------hhhhhhhhccccccccccchhhhcccccccc
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 455 KTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 455 ~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
..++ + .+..+|+.+.+....++..+.....+...+...+..+...+...+.....+++...-....++.+..
T Consensus 504 ~~ei---~-~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 575 (847)
T KOG0998|consen 504 NREI---S-SLEKELNELQQQLSVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELFEQLLK 575 (847)
T ss_pred hhhH---H-HHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhh
No 474
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=33.23 E-value=7.7e+02 Score=28.00 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHH
Q 046695 317 MEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSER---------KEVSKLQERIKSL 387 (604)
Q Consensus 317 ~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~---------~ei~~LqeeI~eL 387 (604)
..-......=|..++.-||.|....- ...+.-.+.+++.+..++...+..+...+ .....+-.-|..|
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~rar---~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~L 291 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARMQ---KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGF 291 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HHHHHHhHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 388 KTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IKAEILGLYEEKA------CLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 388 k~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~~ei~~LqEk~~------sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
..++..++-++..|...+..-..++...+.+ +..+|..+..++. ++...+...+.-.-..+=--+.+...+
T Consensus 292 e~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAl 371 (434)
T PRK15178 292 ETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESAL 371 (434)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 046695 459 TELEERIVGEIEQLKASI 476 (604)
Q Consensus 459 ~e~e~~le~eIs~lk~el 476 (604)
..++ ...+...++.+
T Consensus 372 aaLE---~AR~EA~RQ~~ 386 (434)
T PRK15178 372 QTLQ---QGKLQALRERQ 386 (434)
T ss_pred HHHH---HHHHHHHhhhh
No 475
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.21 E-value=3.6e+02 Score=28.94 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 046695 425 GLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDV 504 (604)
Q Consensus 425 ~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~ 504 (604)
++...+..|..+-....+.+..+..++.+....+ ..+...+-..|.++...+-.+...+..++.+++.+++.+
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~-------~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLL-------ATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HhHHH
Q 046695 505 ISRDD 509 (604)
Q Consensus 505 ~s~r~ 509 (604)
+++..
T Consensus 192 ln~~~ 196 (300)
T KOG2629|consen 192 LNMSN 196 (300)
T ss_pred hcccc
No 476
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=33.09 E-value=8.1e+02 Score=28.26 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 440 WESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASI-AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHL 518 (604)
Q Consensus 440 le~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el-~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L 518 (604)
....+...+.+-+.+..+. ..+.+..+...+.+. .+....-..+..+...-+.++...+..+..+...+...+..|
T Consensus 23 a~~~l~~Ae~eAe~i~keA---~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~L 99 (514)
T TIGR03319 23 AEKKLGSAEELAKRIIEEA---KKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESL 99 (514)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 046695 519 QQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEE 566 (604)
Q Consensus 519 ~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEe 566 (604)
.....++......+......+.++......+..+....=..|+++-.+
T Consensus 100 ekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 100 DKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
No 477
>PF08930 DUF1912: Domain of unknown function (DUF1912); InterPro: IPR015026 This protein has no known function. It is found in various Streptococcal proteins. ; PDB: 1Z0P_A.
Probab=33.08 E-value=2e+02 Score=24.91 Aligned_cols=54 Identities=24% Similarity=0.476 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHhhhcchHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 046695 30 WLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRS 83 (604)
Q Consensus 30 wl~~~l~~~~~~~~~~l~~i~~d~ds~a~~ae~y~~~rp~l~~~v~~~~~~y~~ 83 (604)
|+...+.-.+--|+.--++.++|+|-=|+-|-.-|..|.+-..+|.-=|.-|++
T Consensus 14 Wv~tQi~ine~Am~~s~kv~eeD~derAkdA~iRYESkLDAY~Fl~gKF~Ny~~ 67 (84)
T PF08930_consen 14 WVNTQIQINEMAMKESQKVAEEDGDERAKDAYIRYESKLDAYQFLQGKFENYKA 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhhHHHHHHHHHhhhhc
No 478
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.03 E-value=2.8e+02 Score=22.91 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 046695 478 ERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAH 536 (604)
Q Consensus 478 e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk 536 (604)
++...|+.=..-+..+.+++.............+++.+.....|..++..+...+.+++
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 479
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=32.76 E-value=3.7e+02 Score=24.21 Aligned_cols=108 Identities=11% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE 501 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le 501 (604)
++....-++.-++..|......+......+.....++...+..+...+......+.+..............-........
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~ 80 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKE 80 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 502 SDVISRDDRMDQMEKHLQQLHMEHTELI 529 (604)
Q Consensus 502 qe~~s~r~~I~emE~~L~qLr~E~e~le 529 (604)
.++..+...|..+...+..+........
T Consensus 81 ~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=32.37 E-value=2e+02 Score=25.19 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 046695 374 RKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRI 453 (604)
Q Consensus 374 ~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkq 453 (604)
......|+.++..|..+++.-..-=..|+.++....--+...-..+-..+..+..+++.++.++.+++..+.+|..++-+
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 481
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.73 E-value=5e+02 Score=25.55 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 046695 432 CLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRM 511 (604)
Q Consensus 432 sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I 511 (604)
.|.+-+.|+ ..+.+.......+..+. + .++.++..|+..+..+...+..|..+...+++....|..-+...|..+
T Consensus 81 tl~~vI~fL-q~l~~~~~~~~~~~~e~---~-~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 81 TLQDVISFL-QNLKTTNPSDQALQKEN---E-RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred CHHHHHHHH-HHHHhcchhHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PLN02678 seryl-tRNA synthetase
Probab=31.51 E-value=2.7e+02 Score=31.56 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 046695 426 LYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDV 504 (604)
Q Consensus 426 LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~ 504 (604)
+.+++-.+..+.+.+..++..+..+...+..++..+. ....+...+..+...+.++|..+..+...+++++..+...+
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-IAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 483
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.49 E-value=2.4e+02 Score=31.53 Aligned_cols=72 Identities=28% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 046695 428 EEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRL 500 (604)
Q Consensus 428 Ek~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~L 500 (604)
+++-.+..+.+.+..++..|..+...+..++..+. .-..+...++.+...+..+|..+..+...+++++..+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PLN02678 seryl-tRNA synthetase
Probab=31.46 E-value=3.1e+02 Score=31.12 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 046695 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSL 493 (604)
Q Consensus 421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~L 493 (604)
.++..+-++...+..++..+..+...+..+|..+.......+ .+..++..+++++..++..+..+..++..+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~-~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDAT-ELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.12 E-value=1e+03 Score=28.87 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 402 KMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDK 481 (604)
Q Consensus 402 k~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~ 481 (604)
..-+..+..-+......+..-+.++......++.....++.....++...+.++.+..+++ +..-.-+.....+...
T Consensus 496 ~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~---~~~~~~~~~a~~ea~~ 572 (771)
T TIGR01069 496 HFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK---ERERNKKLELEKEAQE 572 (771)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046695 482 HIENLNRSLDSLKAERDRLESDVISRDDRMDQMEK 516 (604)
Q Consensus 482 ~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~ 516 (604)
.|..+.++...+-.++................++.
T Consensus 573 ~~~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 573 ALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVK 607 (771)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
No 486
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.97 E-value=9.2e+02 Score=28.20 Aligned_cols=141 Identities=10% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046695 447 LEDELRIIKTQKTELEERIVGEIEQL--KASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHME 524 (604)
Q Consensus 447 Le~eIkql~~E~~e~e~~le~eIs~l--k~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E 524 (604)
+...++.++..+.+........+.++ ++++......++.+......-=..+....+++......++..-..++.++.+
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhh------hHHHHHhhHHHHHHHHhc
Q 046695 525 HTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCF------SLEHYRSGYISLRKAVIG 594 (604)
Q Consensus 525 ~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcf------slehyR~~y~~L~~~~~g 594 (604)
+......++..+.+++.-..+=-.++...=..-...+ ..+-++-| |+++|+.-|.++.-++.+
T Consensus 242 ---l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~~----~~~~~~L~g~~i~~~~~~~~~~y~~~~p~i~~ 310 (555)
T TIGR03545 242 ---LQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGDL----KNFAVDLFGPEIRKYLQKFLKYYDQAEPLLNK 310 (555)
T ss_pred ---HHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCcccH----HHHHHHHhhHHHHHHHHHHHHHHHHHhHhhcc
No 487
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=30.93 E-value=7.1e+02 Score=26.89 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHH
Q 046695 387 LKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERI 465 (604)
Q Consensus 387 Lk~qlq~leeeI~eLk~~l~d~eekls~eKa~-l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~l 465 (604)
+-..-+...++-.++-..+....+++..-+.. +.+.+.++.+.+......+..++.++..+...|......+..-....
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~ 118 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE 118 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695 466 VGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLK 545 (604)
Q Consensus 466 e~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~r 545 (604)
...+.+.-..+.+..+.+..+..+.......+.............++....+.-.+-+...-....+...-...+.-...
T Consensus 119 ~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~~~~g~~~e 198 (301)
T PF06120_consen 119 NGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSLKGMNGAHAE 198 (301)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q ss_pred HHHH
Q 046695 546 AKEL 549 (604)
Q Consensus 546 v~eL 549 (604)
.+.+
T Consensus 199 f~~l 202 (301)
T PF06120_consen 199 FNRL 202 (301)
T ss_pred HHHH
No 488
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=30.92 E-value=82 Score=31.03 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQK 411 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eek 411 (604)
.++.++..++.+-++-.-++..| .+...|..++++|+.++.++..++ .+++.+......
T Consensus 1 SLeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~~ 59 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKANRK 59 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhcc
No 489
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.87 E-value=1.7e+02 Score=32.32 Aligned_cols=60 Identities=20% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695 349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl 412 (604)
++.++.+++.++++++.+..+++... +...+++.+..++..++.++.++++-+......+
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~ 303 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDEI 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
No 490
>PRK14154 heat shock protein GrpE; Provisional
Probab=30.83 E-value=4.6e+02 Score=26.76 Aligned_cols=78 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH-----HHHHHHHhhhHHH----------HH
Q 046695 518 LQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEK-----REAIRQLCFSLEH----------YR 582 (604)
Q Consensus 518 L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeK-----reAIrQlcfsleh----------yR 582 (604)
+..+..+...+...+.+++.++..+.....|.++|.++.+..+...|=++ =..|--|+-.|+| ++
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~ 133 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMR 133 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHH
Q ss_pred hh----HHHHHHHHhcC
Q 046695 583 SG----YISLRKAVIGH 595 (604)
Q Consensus 583 ~~----y~~L~~~~~gh 595 (604)
.| |++|..+|..|
T Consensus 134 eGvemi~k~l~~vL~k~ 150 (208)
T PRK14154 134 DGMSLTLDLLHNTLAKH 150 (208)
T ss_pred HHHHHHHHHHHHHHHHC
No 491
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.73 E-value=2.5e+02 Score=29.56 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHME-HTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E-~e~le~~l~elk~kl~ELK 543 (604)
+.|..|+++|+.+++.|-.-....-.-...|..|..+ ++..++|..++++ .++|+....++-+.++.|+
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad--------~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD--------KEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.68 E-value=1.7e+02 Score=24.00 Aligned_cols=59 Identities=31% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 046695 329 LSEAEIASLKQEVESNRSEKIQTLQNQLQL-------AQKDIATWKSKLNSERKEVSKLQERIKSLK 388 (604)
Q Consensus 329 ~se~eI~~Lk~EL~sl~~~kieqLq~eLe~-------~q~eie~i~~kLE~e~~ei~~LqeeI~eLk 388 (604)
..+.++.+|..++..+ ...+..++..|.+ -..-++..+.+++....++..|...|..|+
T Consensus 1 D~~~E~~rL~Kel~kl-~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKL-EKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHH-HHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 493
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.57 E-value=1.6e+02 Score=25.35 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046695 511 MDQMEKHLQQLHMEHTELIKGAED---AHRMVGELRLKAKELEEEIEKQRVVILEGAE 565 (604)
Q Consensus 511 I~emE~~L~qLr~E~e~le~~l~e---lk~kl~ELK~rv~eLeEeve~qk~~i~~~aE 565 (604)
.+++......++..++++...+.+ +...+.+-...+.+|++++.+++.++....+
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=30.45 E-value=1.1e+02 Score=27.58 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 046695 325 EKLMLSEAEIASLKQEVESNRSEKIQTLQNQL-QLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKM 403 (604)
Q Consensus 325 eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eL-e~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~ 403 (604)
.+|..-...-..+...+..+ ...++.|...| +.+.++.+.-+..-......+..|..++.+....+..++.+|..|+.
T Consensus 1 ~~l~~e~~~r~~ae~~~~~i-e~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQI-ESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=30.41 E-value=3.3e+02 Score=30.71 Aligned_cols=98 Identities=23% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695 472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEE 551 (604)
Q Consensus 472 lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeE 551 (604)
.|+.|-.+++.-..++.-...|+.++..|.+-++.++.+..++|..-.+|+.-.-++..-.++++++-+.|+-.-.-|++
T Consensus 123 AKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEe 202 (558)
T PF15358_consen 123 AKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEE 202 (558)
T ss_pred cccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHH
Q ss_pred HH------------HHHHHhhhhhhhhHHHH
Q 046695 552 EI------------EKQRVVILEGAEEKREA 570 (604)
Q Consensus 552 ev------------e~qk~~i~~~aEeKreA 570 (604)
.+ .+|....-++.. |-||
T Consensus 203 kLr~lq~qLqdE~prrqe~e~qELeq-klea 232 (558)
T PF15358_consen 203 KLRYLQQQLQDETPRRQEAEWQELEQ-KLEA 232 (558)
T ss_pred HHHHHHHHhcccCcchhhhhHHHHHH-HHhh
No 496
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.92 E-value=3.4e+02 Score=30.42 Aligned_cols=72 Identities=26% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 046695 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSL 493 (604)
Q Consensus 421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~L 493 (604)
..+..+-.+...+..++..+..+...+..+|..+.......+ .+..++..+++++..+...+..+..++..+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAE-ALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=29.70 E-value=3.7e+02 Score=23.27 Aligned_cols=71 Identities=7% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 046695 464 RIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAED 534 (604)
Q Consensus 464 ~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~e 534 (604)
.+..=+..++.+++.+...+..+....+.++..+..--+++..++..+-+|+.....++...+.-+..+..
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=29.60 E-value=3.1e+02 Score=30.68 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh--hhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQ--KIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSLEDELRII 454 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~ee--kls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql 454 (604)
.+..++..+..++..+..++..++..+..... ............+..+......+..++..+..++..+++.+...
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=29.38 E-value=79 Score=31.12 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695 363 IATWKSKLNSERKEVSKLQERIKS---LKTSLSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 363 ie~i~~kLE~e~~ei~~LqeeI~e---Lk~qlq~leeeI~eLk~~l~d~eekl 412 (604)
+++++.++.....+.+-|+.+|.+ |...+|.+.+|+.||++.+ ...+++
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
No 500
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.37 E-value=3.5e+02 Score=25.48 Aligned_cols=103 Identities=11% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---
Q 046695 342 ESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ--- 418 (604)
Q Consensus 342 ~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~--- 418 (604)
..+ ..+++..++.+......+..+..++.....--.....+|..++.+...+.+++-.+-..+.-+...=......
T Consensus 33 ~dL-~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 33 EDL-KKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q ss_pred HHHHHHhHHHHHHH---HHHHHHHHHHhhh
Q 046695 419 IKAEILGLYEEKAC---LVEQLREWESRGR 445 (604)
Q Consensus 419 l~~ei~~LqEk~~s---Le~eL~ele~~i~ 445 (604)
+...+..+...++. +...+.++-.+++
T Consensus 112 L~~~le~l~~~l~~p~~~~~rl~El~a~l~ 141 (141)
T PF13874_consen 112 LRKRLEALEAQLNAPAQLKGRLNELWAQLR 141 (141)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHhC
Done!