Query 046695
Match_columns 604
No_of_seqs 142 out of 161
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.5 1E-09 3.5E-14 106.8 41.4 87 467-553 195-281 (284)
2 1c1g_A Tropomyosin; contractIl 99.4 6.9E-09 2.3E-13 101.0 40.1 36 231-266 3-38 (284)
3 1i84_S Smooth muscle myosin he 99.1 1E-10 3.5E-15 140.7 7.8 65 492-556 1071-1135(1184)
4 1i84_S Smooth muscle myosin he 99.0 1.3E-10 4.3E-15 140.0 6.9 64 492-555 1064-1127(1184)
5 3na7_A HP0958; flagellar bioge 98.0 0.0011 3.9E-08 66.7 22.2 15 325-339 11-25 (256)
6 2v71_A Nuclear distribution pr 97.4 0.029 1E-06 54.3 22.3 45 477-525 133-177 (189)
7 2v71_A Nuclear distribution pr 97.4 0.038 1.3E-06 53.5 22.2 82 419-508 93-174 (189)
8 3vkg_A Dynein heavy chain, cyt 96.9 0.23 7.9E-06 65.3 29.4 18 68-87 1536-1553(3245)
9 2efr_A General control protein 96.9 0.32 1.1E-05 45.7 23.2 22 384-405 30-51 (155)
10 3vkg_A Dynein heavy chain, cyt 96.8 0.12 4E-06 68.0 24.8 75 494-568 2013-2087(3245)
11 3o0z_A RHO-associated protein 96.6 0.29 1E-05 46.4 20.4 82 347-439 55-136 (168)
12 2dfs_A Myosin-5A; myosin-V, in 96.6 0.048 1.6E-06 65.4 18.1 133 426-565 919-1051(1080)
13 2dfs_A Myosin-5A; myosin-V, in 96.5 0.073 2.5E-06 63.8 19.2 37 465-501 982-1018(1080)
14 3o0z_A RHO-associated protein 96.4 0.7 2.4E-05 43.8 22.1 43 465-507 95-137 (168)
15 2fxo_A Myosin heavy chain, car 96.4 0.31 1.1E-05 44.1 18.2 64 348-411 35-98 (129)
16 2ocy_A RAB guanine nucleotide 96.0 1 3.5E-05 42.2 20.1 93 468-566 59-151 (154)
17 2efr_A General control protein 95.9 1.2 4E-05 41.9 23.6 78 465-556 75-152 (155)
18 3oja_B Anopheles plasmodium-re 95.8 0.093 3.2E-06 57.9 14.3 24 382-405 463-486 (597)
19 2fxo_A Myosin heavy chain, car 95.6 1.2 4.2E-05 40.2 18.5 110 422-542 14-123 (129)
20 2ocy_A RAB guanine nucleotide 95.3 1.9 6.3E-05 40.5 20.0 39 420-458 107-145 (154)
21 2b9c_A Striated-muscle alpha t 94.8 0.45 1.6E-05 44.2 13.2 113 301-414 7-119 (147)
22 2v66_B Nuclear distribution pr 94.7 1.1 3.9E-05 39.7 15.0 92 348-439 4-102 (111)
23 3u1c_A Tropomyosin alpha-1 cha 94.3 1.9 6.3E-05 37.5 15.1 89 465-553 7-95 (101)
24 3u1c_A Tropomyosin alpha-1 cha 93.8 0.68 2.3E-05 40.3 11.4 68 326-394 31-98 (101)
25 3u59_A Tropomyosin beta chain; 93.5 3.2 0.00011 35.9 15.1 87 467-553 9-95 (101)
26 3ol1_A Vimentin; structural ge 93.2 2.6 8.8E-05 37.6 14.6 41 351-391 38-78 (119)
27 2v66_B Nuclear distribution pr 92.1 5.5 0.00019 35.3 14.7 25 384-408 5-29 (111)
28 4gkw_A Spindle assembly abnorm 91.9 7.1 0.00024 35.5 19.8 57 496-552 99-155 (167)
29 2v4h_A NF-kappa-B essential mo 91.9 1.6 5.5E-05 38.5 11.0 85 312-401 25-109 (110)
30 3s84_A Apolipoprotein A-IV; fo 91.8 12 0.00041 37.9 22.1 17 199-215 21-37 (273)
31 2eqb_B RAB guanine nucleotide 91.7 3.3 0.00011 35.9 12.6 70 493-562 24-94 (97)
32 1ic2_A Tropomyosin alpha chain 91.5 1.6 5.4E-05 36.3 10.2 68 346-413 5-72 (81)
33 3tnu_B Keratin, type II cytosk 91.1 3.9 0.00013 36.7 13.3 31 379-409 40-70 (129)
34 3ol1_A Vimentin; structural ge 91.1 6.8 0.00023 34.8 14.6 50 443-496 21-70 (119)
35 3mq7_A Bone marrow stromal ant 90.3 3.6 0.00012 36.7 11.6 78 314-409 28-105 (121)
36 2b9c_A Striated-muscle alpha t 90.1 4 0.00014 37.8 12.5 49 471-519 63-111 (147)
37 3swk_A Vimentin; cytoskeleton, 90.1 2.9 0.0001 35.3 10.7 58 348-405 15-72 (86)
38 3swk_A Vimentin; cytoskeleton, 90.0 4.8 0.00016 33.9 11.9 17 538-554 64-80 (86)
39 3hnw_A Uncharacterized protein 90.0 5.5 0.00019 36.5 13.3 16 296-311 38-55 (138)
40 3u59_A Tropomyosin beta chain; 89.5 9.6 0.00033 32.8 15.2 31 428-458 9-39 (101)
41 3s4r_A Vimentin; alpha-helix, 89.4 5.1 0.00017 34.3 11.8 77 419-508 14-90 (93)
42 3tnu_A Keratin, type I cytoske 89.3 5 0.00017 36.1 12.3 17 422-438 78-94 (131)
43 3q8t_A Beclin-1; autophagy, AT 87.6 13 0.00043 32.0 13.1 77 369-445 12-91 (96)
44 3jsv_C NF-kappa-B essential mo 87.5 3.4 0.00012 35.6 9.2 86 313-403 4-89 (94)
45 2eqb_B RAB guanine nucleotide 86.4 11 0.00038 32.6 11.9 32 348-379 13-44 (97)
46 1ic2_A Tropomyosin alpha chain 85.6 9.7 0.00033 31.5 11.0 42 498-539 23-64 (81)
47 3ghg_A Fibrinogen alpha chain; 84.1 17 0.00057 40.1 14.7 12 570-581 234-245 (562)
48 3bas_A Myosin heavy chain, str 83.9 13 0.00044 31.3 11.2 28 476-503 58-85 (89)
49 1deq_A Fibrinogen (alpha chain 83.3 21 0.0007 37.9 14.6 10 571-580 238-247 (390)
50 3bas_A Myosin heavy chain, str 83.2 16 0.00054 30.8 11.5 16 511-526 58-73 (89)
51 3mq7_A Bone marrow stromal ant 83.1 12 0.00041 33.3 10.9 62 351-412 29-94 (121)
52 2e7s_A RAB guanine nucleotide 83.1 4.6 0.00016 37.0 8.5 36 421-456 96-131 (135)
53 3ghg_A Fibrinogen alpha chain; 82.1 16 0.00056 40.1 13.7 13 330-342 62-74 (562)
54 1x79_B RAB GTPase binding effe 81.7 19 0.00064 32.0 11.7 52 392-443 48-99 (112)
55 3oja_A Leucine-rich immune mol 81.7 26 0.00089 37.4 15.5 8 422-429 354-361 (487)
56 3q8t_A Beclin-1; autophagy, AT 80.1 27 0.00094 29.8 14.5 42 468-509 12-53 (96)
57 1x79_B RAB GTPase binding effe 79.9 23 0.00079 31.4 11.6 69 366-434 36-104 (112)
58 2v4h_A NF-kappa-B essential mo 79.7 32 0.0011 30.4 12.6 36 423-458 26-61 (110)
59 1fxk_A Prefoldin; archaeal pro 78.7 29 0.001 29.3 12.3 28 502-529 72-99 (107)
60 4h22_A Leucine-rich repeat fli 77.2 13 0.00044 32.5 8.9 64 492-555 20-83 (103)
61 3s4r_A Vimentin; alpha-helix, 76.9 34 0.0012 29.1 12.3 29 383-411 10-38 (93)
62 1m1j_B Fibrinogen beta chain; 76.1 56 0.0019 35.6 15.7 54 476-529 102-155 (464)
63 3a7p_A Autophagy protein 16; c 75.2 53 0.0018 30.5 13.3 37 330-367 66-102 (152)
64 3i00_A HIP-I, huntingtin-inter 75.1 11 0.00038 33.7 8.3 44 396-439 15-58 (120)
65 3i00_A HIP-I, huntingtin-inter 74.7 23 0.00079 31.7 10.3 67 493-559 45-114 (120)
66 3uux_B Mitochondrial division 72.9 25 0.00087 35.0 11.0 62 349-410 165-226 (242)
67 3mq9_A Bone marrow stromal ant 71.9 61 0.0021 34.3 14.9 24 15-41 21-44 (471)
68 3mq9_A Bone marrow stromal ant 70.4 1.1E+02 0.0039 32.2 17.2 6 433-438 402-407 (471)
69 4gkw_A Spindle assembly abnorm 70.0 65 0.0022 29.3 22.3 17 351-367 29-45 (167)
70 1deq_A Fibrinogen (alpha chain 69.9 57 0.0019 34.6 13.4 11 330-340 65-75 (390)
71 1fxk_A Prefoldin; archaeal pro 69.6 50 0.0017 27.8 11.2 9 430-438 74-82 (107)
72 1gk4_A Vimentin; intermediate 68.2 50 0.0017 27.3 11.0 6 431-436 11-16 (84)
73 1gk4_A Vimentin; intermediate 67.3 53 0.0018 27.2 11.1 13 446-458 12-24 (84)
74 1x8y_A Lamin A/C; structural p 66.9 55 0.0019 27.3 10.6 11 499-509 67-77 (86)
75 2jee_A YIIU; FTSZ, septum, coi 66.8 56 0.0019 27.3 11.6 27 486-512 46-72 (81)
76 1m1j_C Fibrinogen gamma chain; 66.6 67 0.0023 34.4 13.5 19 468-486 49-67 (409)
77 1fxk_C Protein (prefoldin); ar 65.7 39 0.0013 29.9 9.9 9 430-438 10-18 (133)
78 3cvf_A Homer-3, homer protein 65.7 35 0.0012 28.4 8.7 13 446-458 10-22 (79)
79 2nr5_A Hypothetical protein SO 63.6 5.1 0.00017 31.0 3.0 44 551-595 9-63 (67)
80 1m1j_A Fibrinogen alpha subuni 63.5 1.7E+02 0.0058 31.8 15.9 24 497-520 134-157 (491)
81 3qh9_A Liprin-beta-2; coiled-c 61.0 67 0.0023 26.8 9.5 48 472-519 24-71 (81)
82 2oto_A M protein; helical coil 59.0 1.1E+02 0.0037 28.0 19.9 16 427-442 99-114 (155)
83 3efg_A Protein SLYX homolog; x 58.1 30 0.001 28.5 7.1 51 393-447 11-61 (78)
84 3ni0_A Bone marrow stromal ant 58.0 91 0.0031 26.8 10.3 30 315-344 22-51 (99)
85 3ghg_C Fibrinogen gamma chain; 56.5 79 0.0027 33.9 11.8 20 532-551 114-133 (411)
86 3jsv_C NF-kappa-B essential mo 53.7 1.1E+02 0.0036 26.3 10.7 20 437-456 18-37 (94)
87 2xu6_A MDV1 coiled coil; prote 53.0 58 0.002 26.6 7.7 58 350-407 10-67 (72)
88 4hpq_C ATG17, KLTH0D15642P; au 52.9 2.4E+02 0.0082 30.1 28.9 27 564-590 317-343 (413)
89 1d7m_A Cortexillin I; coiled-c 52.4 1.1E+02 0.0037 26.1 13.9 42 375-416 25-66 (101)
90 1go4_E MAD1 (mitotic arrest de 51.9 98 0.0034 26.8 9.5 25 541-565 72-96 (100)
91 3uux_B Mitochondrial division 51.3 1.1E+02 0.0038 30.4 11.0 71 446-520 153-223 (242)
92 2i1j_A Moesin; FERM, coiled-co 51.2 32 0.0011 38.3 8.1 51 538-596 512-565 (575)
93 3qh9_A Liprin-beta-2; coiled-c 50.8 79 0.0027 26.4 8.3 32 359-390 38-69 (81)
94 2w83_C C-JUN-amino-terminal ki 50.4 1E+02 0.0034 25.5 8.8 40 479-518 35-74 (77)
95 1ci6_A Transcription factor AT 48.7 48 0.0016 26.1 6.5 37 526-562 26-62 (63)
96 3ghg_B Fibrinogen beta chain; 48.0 2.4E+02 0.0081 30.6 13.8 21 540-560 166-186 (461)
97 4etp_A Kinesin-like protein KA 47.6 37 0.0013 36.1 7.6 43 348-390 18-60 (403)
98 1m1j_A Fibrinogen alpha subuni 46.3 2.7E+02 0.0091 30.3 13.7 38 467-504 118-155 (491)
99 2pms_C Pneumococcal surface pr 46.2 99 0.0034 27.8 8.9 75 190-267 10-87 (125)
100 1kd8_B GABH BLL, GCN4 acid bas 44.8 36 0.0012 24.1 4.5 29 533-561 4-32 (36)
101 4h22_A Leucine-rich repeat fli 44.8 1E+02 0.0035 26.8 8.5 45 468-512 45-89 (103)
102 1go4_E MAD1 (mitotic arrest de 44.5 52 0.0018 28.6 6.6 31 376-406 13-43 (100)
103 3l4q_C Phosphatidylinositol 3- 43.4 2.2E+02 0.0074 26.9 16.7 63 468-530 90-152 (170)
104 2i1j_A Moesin; FERM, coiled-co 43.3 32 0.0011 38.3 6.5 23 73-95 93-115 (575)
105 4etp_A Kinesin-like protein KA 40.5 68 0.0023 34.0 8.3 51 493-543 8-58 (403)
106 4emc_A Monopolin complex subun 40.0 90 0.0031 30.0 8.1 43 370-412 15-57 (190)
107 2k48_A Nucleoprotein; viral pr 39.4 1.3E+02 0.0046 26.2 8.3 63 375-443 35-97 (107)
108 2lw1_A ABC transporter ATP-bin 39.0 95 0.0033 25.8 7.3 22 437-458 24-45 (89)
109 2pms_C Pneumococcal surface pr 39.0 2E+02 0.0067 25.9 9.7 28 249-276 14-41 (125)
110 1wle_A Seryl-tRNA synthetase; 38.1 1.6E+02 0.0055 32.2 10.9 28 379-406 120-147 (501)
111 4emc_A Monopolin complex subun 37.7 1.8E+02 0.0063 27.8 9.8 33 312-344 21-53 (190)
112 2xdj_A Uncharacterized protein 36.6 1.8E+02 0.0063 24.1 10.0 32 493-524 25-56 (83)
113 3zx6_A HAMP, methyl-accepting 36.3 3.6E+02 0.012 27.4 37.9 10 449-458 188-197 (341)
114 3m48_A General control protein 36.2 46 0.0016 23.3 3.9 29 533-561 3-31 (33)
115 2dq0_A Seryl-tRNA synthetase; 35.8 1.5E+02 0.0051 31.9 10.2 29 379-407 73-101 (455)
116 3efg_A Protein SLYX homolog; x 34.3 1.3E+02 0.0043 24.8 7.2 31 382-412 28-58 (78)
117 2xu6_A MDV1 coiled coil; prote 34.1 1.4E+02 0.0048 24.4 7.2 54 468-521 15-68 (72)
118 3iv1_A Tumor susceptibility ge 34.1 2E+02 0.0069 23.8 9.7 6 354-359 35-40 (78)
119 3ni0_A Bone marrow stromal ant 32.9 2.4E+02 0.0081 24.3 10.0 16 375-390 46-61 (99)
120 3u06_A Protein claret segregat 32.7 1.2E+02 0.004 32.4 8.5 37 489-525 4-40 (412)
121 2y3a_B Phosphatidylinositol 3- 32.6 4.1E+02 0.014 27.0 14.3 60 467-526 90-149 (302)
122 2xzr_A Immunoglobulin-binding 32.5 2.4E+02 0.0083 24.3 16.3 47 507-560 60-106 (114)
123 2lw1_A ABC transporter ATP-bin 31.7 2.2E+02 0.0075 23.5 8.5 23 319-341 23-45 (89)
124 1kd8_A GABH AIV, GCN4 acid bas 31.2 80 0.0027 22.4 4.5 29 533-561 4-32 (36)
125 4fi5_A Nucleoprotein; structur 30.9 2E+02 0.0069 25.4 8.1 61 377-443 24-84 (113)
126 3r6n_A Desmoplakin; spectrin r 30.2 5.4E+02 0.018 27.6 27.2 23 347-369 90-112 (450)
127 1z0p_A Hypothetical protein SP 30.0 1.5E+02 0.005 24.5 6.6 53 29-91 13-65 (84)
128 2ic6_A Nucleocapsid protein; h 29.9 2.4E+02 0.0082 23.4 8.2 62 376-443 6-67 (78)
129 3u06_A Protein claret segregat 29.6 97 0.0033 33.0 7.3 42 348-389 18-59 (412)
130 1ses_A Seryl-tRNA synthetase; 29.5 1.8E+02 0.0063 30.8 9.5 29 378-406 67-95 (421)
131 2wq1_A General control protein 29.2 95 0.0032 21.6 4.5 28 533-560 3-30 (33)
132 4fye_A SIDF, inhibitor of grow 29.0 5.2E+02 0.018 27.2 12.3 101 382-488 479-584 (761)
133 3m9b_A Proteasome-associated A 28.7 62 0.0021 32.5 5.1 44 515-558 53-96 (251)
134 2ic9_A Nucleocapsid protein; h 28.6 2.5E+02 0.0086 24.1 8.2 61 377-443 7-67 (96)
135 4dzn_A Coiled-coil peptide CC- 28.3 1.1E+02 0.0037 20.7 4.6 30 468-504 3-32 (33)
136 4dzn_A Coiled-coil peptide CC- 27.8 1.2E+02 0.0041 20.5 4.7 27 377-403 4-30 (33)
137 2zdi_C Prefoldin subunit alpha 27.7 3.3E+02 0.011 24.4 9.6 6 473-478 39-44 (151)
138 1lwu_C Fibrinogen gamma chain; 27.0 1.2E+02 0.0041 31.4 7.2 16 538-553 41-56 (323)
139 2yy0_A C-MYC-binding protein; 26.9 98 0.0033 23.6 4.9 25 379-403 23-47 (53)
140 3a7o_A Autophagy protein 16; c 26.8 2.6E+02 0.0088 22.8 8.5 26 498-523 21-46 (75)
141 2oxj_A Hybrid alpha/beta pepti 26.7 1E+02 0.0036 21.6 4.4 29 533-561 4-32 (34)
142 2xnx_M M protein, M1-BC1; cell 26.6 83 0.0028 29.0 5.2 14 503-516 123-136 (146)
143 2nrj_A HBL B protein; enteroto 26.4 5.5E+02 0.019 26.4 21.7 72 338-413 122-193 (346)
144 3c3f_A Alpha/beta peptide with 26.4 1.1E+02 0.0039 21.4 4.5 28 533-560 4-31 (34)
145 4ad8_A DNA repair protein RECN 26.1 6.2E+02 0.021 27.0 18.6 40 536-578 308-347 (517)
146 3ghg_B Fibrinogen beta chain; 26.0 5.9E+02 0.02 27.6 12.5 19 316-334 86-104 (461)
147 3haj_A Human pacsin2 F-BAR; pa 25.7 6.3E+02 0.022 26.9 17.5 15 182-196 18-32 (486)
148 3c9i_A Tail needle protein GP2 25.6 4.8E+02 0.016 25.4 12.8 65 448-523 83-147 (242)
149 1t2k_D Cyclic-AMP-dependent tr 25.3 2.3E+02 0.0079 21.7 8.0 26 380-405 27-52 (61)
150 2k48_A Nucleoprotein; viral pr 25.1 3.4E+02 0.012 23.6 8.9 23 504-526 77-99 (107)
151 2no2_A HIP-I, huntingtin-inter 25.1 3.4E+02 0.011 23.5 14.9 20 427-446 53-72 (107)
152 1f5n_A Interferon-induced guan 25.0 7.4E+02 0.025 27.5 14.5 16 509-524 567-582 (592)
153 3cl3_D NF-kappa-B essential mo 24.8 1.4E+02 0.0047 27.0 6.1 16 538-553 56-71 (130)
154 3he5_B Synzip2; heterodimeric 24.5 2.1E+02 0.0072 21.1 6.0 38 509-546 10-47 (52)
155 1gd2_E Transcription factor PA 24.5 2E+02 0.0069 23.2 6.6 15 539-553 52-66 (70)
156 3c3g_A Alpha/beta peptide with 24.3 1.3E+02 0.0045 20.9 4.5 27 534-560 4-30 (33)
157 3t98_B Nucleoporin NUP58/NUP45 24.2 2.7E+02 0.0093 23.6 7.7 63 497-559 14-80 (93)
158 2yko_A LINE-1 ORF1P; RNA-bindi 24.2 68 0.0023 31.8 4.5 57 509-565 6-62 (233)
159 1uo4_A General control protein 24.1 1.2E+02 0.0043 21.2 4.4 28 534-561 5-32 (34)
160 3hhm_B NISH2 P85alpha; PI3KCA, 23.9 6.4E+02 0.022 26.3 16.4 61 468-528 199-259 (373)
161 1nfn_A Apolipoprotein E3; lipi 23.9 4.6E+02 0.016 24.7 11.3 19 398-416 68-86 (191)
162 1txp_A HnRNP C, heterogeneous 23.7 81 0.0028 21.2 3.3 23 533-555 2-24 (28)
163 4e61_A Protein BIM1; EB1-like 23.5 2.8E+02 0.0097 24.2 7.7 38 465-502 16-53 (106)
164 3lss_A Seryl-tRNA synthetase; 23.3 3.3E+02 0.011 29.7 10.1 23 384-406 113-135 (484)
165 2xzr_A Immunoglobulin-binding 22.8 3.7E+02 0.013 23.2 16.2 45 367-411 5-49 (114)
166 3plt_A Sphingolipid long chain 22.7 5.6E+02 0.019 25.3 14.4 96 474-572 62-163 (234)
167 4fla_A Regulation of nuclear P 22.7 4.5E+02 0.015 24.1 13.7 42 348-389 69-110 (152)
168 2c5k_T Syntaxin TLG1, T-snare 22.2 3.4E+02 0.012 22.9 8.0 26 500-525 66-91 (95)
169 3hhm_B NISH2 P85alpha; PI3KCA, 22.2 6.9E+02 0.023 26.1 17.0 17 423-439 200-216 (373)
170 3onj_A T-snare VTI1; helix, HA 21.9 3.5E+02 0.012 22.7 11.1 54 348-401 35-92 (97)
171 2xdj_A Uncharacterized protein 21.9 3.4E+02 0.012 22.5 10.2 31 514-544 25-55 (83)
172 2yko_A LINE-1 ORF1P; RNA-bindi 21.3 1.5E+02 0.0051 29.4 6.3 32 378-409 16-47 (233)
173 1t2k_D Cyclic-AMP-dependent tr 21.0 2.5E+02 0.0085 21.5 6.4 19 540-558 39-57 (61)
174 2hy6_A General control protein 20.4 1.7E+02 0.0059 20.5 4.5 28 533-560 4-31 (34)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.50 E-value=1e-09 Score=106.85 Aligned_cols=87 Identities=11% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA 546 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv 546 (604)
..+..+...+..+...+..+......+...+..+...+......+..++..+..+...+..+...+..+...++.++.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (284)
T 1c1g_A 195 EEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHH
Q 046695 547 KELEEEI 553 (604)
Q Consensus 547 ~eLeEev 553 (604)
.++...+
T Consensus 275 ~~~~~~L 281 (284)
T 1c1g_A 275 DHALNDM 281 (284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665554
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.41 E-value=6.9e-09 Score=101.01 Aligned_cols=36 Identities=6% Similarity=-0.037 Sum_probs=17.1
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhcHHHHHHHHHHHhh
Q 046695 231 ALFARIVGYEKKLRLANEKIHISNEEILRLKIELQK 266 (604)
Q Consensus 231 ~l~~~~~~~~~el~~~n~~~~~~e~ei~~lk~ele~ 266 (604)
.++.++.++..++..+...+..++.++..++..+..
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~ 38 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444444444444444433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.07 E-value=1e-10 Score=140.73 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQ 556 (604)
Q Consensus 492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~q 556 (604)
.++..+..+..++......+..++..+.+++.++..+...+..+...+.+++.++.++.++++..
T Consensus 1071 ~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~ 1135 (1184)
T 1i84_S 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135 (1184)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444555555555555554443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.04 E-value=1.3e-10 Score=139.97 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEK 555 (604)
Q Consensus 492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~ 555 (604)
.++.++..+..++......+..++..+..+..+...+...+..+...+.++..++..++.+++.
T Consensus 1064 ~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~ 1127 (1184)
T 1i84_S 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127 (1184)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444433333333333444444444444433
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.95 E-value=0.0011 Score=66.69 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 046695 325 EKLMLSEAEIASLKQ 339 (604)
Q Consensus 325 eeL~~se~eI~~Lk~ 339 (604)
-.|+..+.+|..+..
T Consensus 11 ~~LQ~lD~~i~~l~~ 25 (256)
T 3na7_A 11 IEISHLDKEIDSLEP 25 (256)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.44 E-value=0.029 Score=54.30 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 477 AERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH 525 (604)
Q Consensus 477 ~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~ 525 (604)
.+....+..+.....-|+.++.+ ...++..++.+.+.++.|+.+.
T Consensus 133 eD~e~kln~aiEr~alLE~El~E----Ke~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 133 EDFEQRLNQAIERNAFLESELDE----KESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444432 2233444445555555555443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.38 E-value=0.038 Score=53.52 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=34.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
+..++..+...+..+...++.++.....++...+....-+ + .++...+.....++-+...|. +++.+...++
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl---e-D~e~kln~aiEr~alLE~El~----EKe~l~~~~Q 164 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSL---E-DFEQRLNQAIERNAFLESELD----EKESLLVSVQ 164 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH---H-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 4445555555555555555555555555555555544444 3 344444444444444444443 2444444444
Q ss_pred HHHHHHHhHH
Q 046695 499 RLESDVISRD 508 (604)
Q Consensus 499 ~Leqe~~s~r 508 (604)
.|+.++..++
T Consensus 165 RLkdE~rDLk 174 (189)
T 2v71_A 165 RLKDEARDLR 174 (189)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.93 E-value=0.23 Score=65.30 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 046695 68 PELISHVEEFYRMYRSLAER 87 (604)
Q Consensus 68 p~l~~~v~~~~~~y~~laer 87 (604)
..|+.+. .|-++|-.++|
T Consensus 1536 ~~lvrLW--~HE~~RVF~DR 1553 (3245)
T 3vkg_A 1536 EGLVRLW--AHEALRLFQDR 1553 (3245)
T ss_dssp THHHHHH--HHHHHHHHTTT
T ss_pred HHHHHHH--HHHHHHHHHHH
Confidence 4566666 66777777776
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.85 E-value=0.32 Score=45.71 Aligned_cols=22 Identities=5% Similarity=0.107 Sum_probs=8.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH
Q 046695 384 IKSLKTSLSDRDHEVRDLKMAV 405 (604)
Q Consensus 384 I~eLk~qlq~leeeI~eLk~~l 405 (604)
+..-..+....+..+.+|+..+
T Consensus 30 LEraEERae~aE~k~~eLEeeL 51 (155)
T 2efr_A 30 LERAEERAELSEGKSAELEEEL 51 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.77 E-value=0.12 Score=68.04 Aligned_cols=75 Identities=9% Similarity=0.173 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 046695 494 KAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAEEKR 568 (604)
Q Consensus 494 e~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKr 568 (604)
++++..++.++......+......|.++....+.+...+..+-.+...|+.++...+.++++-...|.+++.||-
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 333344444444444444444444444444444444444444444555555666666666666666666666663
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.64 E-value=0.29 Score=46.42 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhH
Q 046695 347 EKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGL 426 (604)
Q Consensus 347 ~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~L 426 (604)
.+...|+.....++.++..++..|+.++.....-.+.+.++..++..+..++..++..+..+. .+..++
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~-----------~e~r~L 123 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE-----------GERKEA 123 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 345556666666666666666666666666666666666666666666666655555444322 334455
Q ss_pred HHHHHHHHHHHHH
Q 046695 427 YEEKACLVEQLRE 439 (604)
Q Consensus 427 qEk~~sLe~eL~e 439 (604)
+++++.++++...
T Consensus 124 ~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 124 QDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.56 E-value=0.048 Score=65.37 Aligned_cols=133 Identities=13% Similarity=0.153 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 046695 426 LYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVI 505 (604)
Q Consensus 426 LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~ 505 (604)
+......|+.++.+++.++...+.+...+.+++..++..+..++..|+.++++++. +..++..+++.+..|+.++.
T Consensus 919 l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~----~~~e~~~~~~~v~~L~~e~~ 994 (1080)
T 2dfs_A 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM----SEEEAKNATNRVLSLQEEIA 994 (1080)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666655543443455666666555555333 33444444555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046695 506 SRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAE 565 (604)
Q Consensus 506 s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aE 565 (604)
..+..+....++...+...++++.. ++..+++.|+.....|+..++.....|.+.++
T Consensus 995 ~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 995 KLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444333332 22333444444433344333333333333333
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.51 E-value=0.073 Score=63.78 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE 501 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le 501 (604)
++..+..+..+++.++..+..+.+++..+++....+.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666655554
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.39 E-value=0.7 Score=43.84 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISR 507 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~ 507 (604)
+++.|..|..++......+..+..++-.+.+.+..|+.+..++
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555555555555555554444433
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.35 E-value=0.31 Score=44.10 Aligned_cols=64 Identities=13% Similarity=0.272 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQK 411 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eek 411 (604)
....|......+..+++.+..+|+.+........+....|......++..|.++...+.+.++.
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~ 98 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666777777777777777777777777777777777777665543
No 16
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.01 E-value=1 Score=42.19 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAK 547 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~ 547 (604)
++..|...+.+-...-......+..+..++..|..-+++-=+.+ ...=+++...++.....++..+.+....+.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M------Va~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM------VADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444555555555655555544432222 233355666666666667777777777777
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 046695 548 ELEEEIEKQRVVILEGAEE 566 (604)
Q Consensus 548 eLeEeve~qk~~i~~~aEe 566 (604)
.+...+-.+|.++-.+..+
T Consensus 133 ~lq~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 133 TLTLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 8888887777777665443
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.89 E-value=1.2 Score=41.87 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRL 544 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~ 544 (604)
++.+|..|...+.+....-+...+....|+..++.|+.++...+.....+...|. ..-..++.+..
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd--------------~tl~el~~~~~ 140 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK--------------QLEDKVEELLS 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhccc
Confidence 4444444444444444444444444444444444444444444444444433333 33333444445
Q ss_pred HHHHHHHHHHHH
Q 046695 545 KAKELEEEIEKQ 556 (604)
Q Consensus 545 rv~eLeEeve~q 556 (604)
....|..+|-++
T Consensus 141 ~~~~~~~~~~~~ 152 (155)
T 2efr_A 141 KNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 555555555444
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.79 E-value=0.093 Score=57.85 Aligned_cols=24 Identities=8% Similarity=0.286 Sum_probs=9.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 046695 382 ERIKSLKTSLSDRDHEVRDLKMAV 405 (604)
Q Consensus 382 eeI~eLk~qlq~leeeI~eLk~~l 405 (604)
..+..++.++...+..+..+.+.+
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.60 E-value=1.2 Score=40.18 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=52.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLE 501 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Le 501 (604)
++....+.+..++..+.........++.....+..++ . .+..++..-...+.+....+..|.+.+..+...+..+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek---~-~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el- 88 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEK---N-DLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM- 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3334444444444444444444444444444444444 1 2222333333444444455555555555555544444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 046695 502 SDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGEL 542 (604)
Q Consensus 502 qe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~EL 542 (604)
...+.+.++....|...+.+++.....++..+.++
T Consensus 89 ------~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 89 ------NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666665554444444443
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.35 E-value=1.9 Score=40.45 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 420 KAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 420 ~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
+.+-+.+..++..|+..+.+.+..+.+++.++..++.=+
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777777766665433
No 21
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.79 E-value=0.45 Score=44.22 Aligned_cols=113 Identities=10% Similarity=0.130 Sum_probs=82.2
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 046695 301 GLETPSLDLDNKVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKL 380 (604)
Q Consensus 301 eLE~el~el~~kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~L 380 (604)
-++.++......+......|..+...-..++.-...|.+.-..- ..++..|..+|..+...-+....+.......+.-+
T Consensus 7 llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~d-eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~ 85 (147)
T 2b9c_A 7 LVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKD-EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 85 (147)
T ss_dssp ----CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34445555554455555555555556666666666776655554 67899999999999988889999999988888888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhch
Q 046695 381 QERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFP 414 (604)
Q Consensus 381 qeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~ 414 (604)
...+..........+..+.+|+..+....+++..
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888877766643
No 22
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.75 E-value=1.1 Score=39.73 Aligned_cols=92 Identities=22% Similarity=0.244 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh---HH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERK----EVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ---IK 420 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~----ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~---l~ 420 (604)
+...|+.....+..+++.|+.|+..... .+..|+.+|..+......+...|.+|+++-.+++..-+...+. +-
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 4555666666666666777777666654 3666777777777777777777777777777666555443333 33
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 046695 421 AEILGLYEEKACLVEQLRE 439 (604)
Q Consensus 421 ~ei~~LqEk~~sLe~eL~e 439 (604)
..+...-++.+-|+.+|.+
T Consensus 84 ~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 84 QRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555553
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.26 E-value=1.9 Score=37.49 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRL 544 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~ 544 (604)
+...|..++.+.+......+.+....-..+.....++.++.++...|..+++++.............+.........-..
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444445555555555555555555554444444444444444444444444
Q ss_pred HHHHHHHHH
Q 046695 545 KAKELEEEI 553 (604)
Q Consensus 545 rv~eLeEev 553 (604)
.|.+|..+|
T Consensus 87 ev~~L~Rri 95 (101)
T 3u1c_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455554444
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.76 E-value=0.68 Score=40.26 Aligned_cols=68 Identities=9% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhH
Q 046695 326 KLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDR 394 (604)
Q Consensus 326 eL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~l 394 (604)
.+...+.....+..++.++ ..++..++.+++.++..+.....+++............+..|+-+++-+
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL-~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQL-EKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444 5566666777776666666666666666655555555555555444433
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.47 E-value=3.2 Score=35.88 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA 546 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv 546 (604)
..|..++.+.+......+.+..+.-..+.....++.++.+....|..+++++.............+........+-...|
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ev 88 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEV 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444433333334444444444444
Q ss_pred HHHHHHH
Q 046695 547 KELEEEI 553 (604)
Q Consensus 547 ~eLeEev 553 (604)
.+|..+|
T Consensus 89 asLnRri 95 (101)
T 3u59_A 89 ASLNRRI 95 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 26
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.24 E-value=2.6 Score=37.61 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695 351 TLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL 391 (604)
Q Consensus 351 qLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql 391 (604)
.+.-++.+++...+.++.+++.+......++..+..++..+
T Consensus 38 ~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 38 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 34445556666666677777666655544444444444433
No 27
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=92.06 E-value=5.5 Score=35.33 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=12.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Q 046695 384 IKSLKTSLSDRDHEVRDLKMAVSDA 408 (604)
Q Consensus 384 I~eLk~qlq~leeeI~eLk~~l~d~ 408 (604)
...|+.....+..++..++..+...
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~ 29 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQ 29 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555543
No 28
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=91.95 E-value=7.1 Score=35.52 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 046695 496 ERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEE 552 (604)
Q Consensus 496 el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEe 552 (604)
++.+|+.++.+++..+..+-.-|.-|+++.+.---...+.-+.+..|+..-.++.++
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vker 155 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEK 155 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 455677777777777777777776666665544433334444444444444444443
No 29
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.89 E-value=1.6 Score=38.54 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 046695 312 KVKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSL 391 (604)
Q Consensus 312 kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ql 391 (604)
+|..|+..|..+.+.|..-..+|..++.++... ....+.+..+...++-|...+..++.....++.++..|..++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~-----~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH-----KIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 444556666666566666666666666654432 222245667777778889999999999999999999999998
Q ss_pred hhHHHHHHHH
Q 046695 392 SDRDHEVRDL 401 (604)
Q Consensus 392 q~leeeI~eL 401 (604)
..++.++..|
T Consensus 100 ~~Lq~q~~~l 109 (110)
T 2v4h_A 100 EQLQREFNKL 109 (110)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhc
Confidence 8887776544
No 30
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=91.81 E-value=12 Score=37.86 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhhhhh
Q 046695 199 ETELREAKEKLHSQEER 215 (604)
Q Consensus 199 e~e~~~~~~k~~~~~e~ 215 (604)
..++.+++.+|.+..+.
T Consensus 21 ~~~~eel~~~L~P~~~~ 37 (273)
T 3s84_A 21 GKELEELRARLLPHANE 37 (273)
T ss_dssp HHHHHHHHHHHGGGHHH
T ss_pred HHHHHHHHHhcCCcHHH
Confidence 34556666777666444
No 31
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.73 E-value=3.3 Score=35.85 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK-GAEDAHRMVGELRLKAKELEEEIEKQRVVILE 562 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~-~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~ 562 (604)
+..++..|..++..-+..-...+....++..+++.|++ .+.++-.-|+.=+..-..++.+++.++.+|-|
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444445555555555555555666666666666655 44556666666666666666666666666544
No 32
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.49 E-value=1.6 Score=36.32 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 046695 346 SEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413 (604)
Q Consensus 346 ~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls 413 (604)
..++..|+.+.+.+..+.+....++.....+...+...|..|+.+++.++.++..++..+..+..++.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777777777777777777777777777777777777666666665553
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.13 E-value=3.9 Score=36.73 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e 409 (604)
.+...|..|..+++.+......|+..+.+++
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333333333444444433
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.11 E-value=6.8 Score=34.84 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 046695 443 RGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAE 496 (604)
Q Consensus 443 ~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~e 496 (604)
.|..|..+|..+..+. - .+..+|.+++..+++.+..++.-...+..++..
T Consensus 21 ~I~~LR~qid~~~~e~---a-~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDK---A-RVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444444444 2 344455555555555555444433333333333
No 35
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=90.34 E-value=3.6 Score=36.70 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 046695 314 KALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSD 393 (604)
Q Consensus 314 ~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~ 393 (604)
--|+.+|..+.+.|...+.+-+.-+..+..| ...++...... .+.+.+|+.+|+.|+.++++
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL-~~SL~~ekaq~-----------------q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMAL-MASLDAEKAQG-----------------QKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888776666 22222211111 23467777778888887777
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 394 RDHEVRDLKMAVSDAE 409 (604)
Q Consensus 394 leeeI~eLk~~l~d~e 409 (604)
...+|..|......+.
T Consensus 90 a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 90 ASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhchhhh
Confidence 7777777766555443
No 36
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=90.09 E-value=4 Score=37.84 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695 471 QLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQ 519 (604)
Q Consensus 471 ~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~ 519 (604)
..+.-..+....+..+......++..+...+.........+.+++..|+
T Consensus 63 eak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 63 EAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333
No 37
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.08 E-value=2.9 Score=35.26 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAV 405 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l 405 (604)
.--.+.-++.+++..++.++.+++.+......++..+..++..+.++-=.-.+|+..+
T Consensus 15 e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kv 72 (86)
T 3swk_A 15 DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKV 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445666778888888888999998888888888888888887765543333333333
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.00 E-value=4.8 Score=33.95 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046695 538 MVGELRLKAKELEEEIE 554 (604)
Q Consensus 538 kl~ELK~rv~eLeEeve 554 (604)
.-.+|..++.+|.+++.
T Consensus 64 ~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 64 ARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.99 E-value=5.5 Score=36.46 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=7.0
Q ss_pred HhhhhccCCc--chhhhH
Q 046695 296 QEGINGLETP--SLDLDN 311 (604)
Q Consensus 296 q~~I~eLE~e--l~el~~ 311 (604)
...+.++... ...+..
T Consensus 38 d~km~ei~~~~~~~~l~~ 55 (138)
T 3hnw_A 38 NNKITEFNKEESYRRMSA 55 (138)
T ss_dssp HHHHHHHTTCHHHHTSCH
T ss_pred HHHHHHHHhccCCCCCCH
Confidence 4444445533 444443
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.47 E-value=9.6 Score=32.80 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 428 EEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 428 Ek~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
.++.+|+.+...+..+...++.+++......
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~ 39 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRC 39 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444444444444433
No 41
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.40 E-value=5.1 Score=34.29 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=34.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 046695 419 IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERD 498 (604)
Q Consensus 419 l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~ 498 (604)
||..|+.+-++|-.|+++-. .|+.+|..+.... . . .--.-....|..+...|..+..++..+.-+++
T Consensus 14 LNdRlAsyIdKVR~LEqqN~-------~Le~~i~~l~~~~---~-~--~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNK-------ILLAELEQLKGQG---K-S--RLGDLYEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc---C-C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444 4455554444322 1 0 00111234444445555555555555555555
Q ss_pred HHHHHHHhHH
Q 046695 499 RLESDVISRD 508 (604)
Q Consensus 499 ~Leqe~~s~r 508 (604)
.+..++...+
T Consensus 81 nl~~~~~~~k 90 (93)
T 3s4r_A 81 NLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.26 E-value=5 Score=36.14 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=7.5
Q ss_pred HHHhHHHHHHHHHHHHH
Q 046695 422 EILGLYEEKACLVEQLR 438 (604)
Q Consensus 422 ei~~LqEk~~sLe~eL~ 438 (604)
++..++..+..++.+|.
T Consensus 78 ~l~~~q~~i~~lE~eL~ 94 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLA 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.56 E-value=13 Score=32.00 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 046695 369 KLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDA---EQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGR 445 (604)
Q Consensus 369 kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~---eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~ 445 (604)
.|.....+-+.|..+|..+......+..+|..++.....+ +.+|=-....+..+...+++...+++.++.+-..++.
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555556666666666666666655443322 2222222233445555555666666666655554444
No 44
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.49 E-value=3.4 Score=35.57 Aligned_cols=86 Identities=23% Similarity=0.378 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 046695 313 VKALMEELRITKEKLMLSEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLS 392 (604)
Q Consensus 313 l~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq 392 (604)
+..|...|..+.+.|..-...|..|+.+.. ..+.....+..+...+.-|...+..+++....+..+...|..++.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~-----q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~ 78 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAE-----QHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 78 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555555555566666666666666533 233344667777777888999999999999999988888888888
Q ss_pred hHHHHHHHHHH
Q 046695 393 DRDHEVRDLKM 403 (604)
Q Consensus 393 ~leeeI~eLk~ 403 (604)
.+..++..|+.
T Consensus 79 ~lq~q~~~L~~ 89 (94)
T 3jsv_C 79 QLQREFNKLKV 89 (94)
T ss_dssp HHHHTTC----
T ss_pred HHHHHHHHHHH
Confidence 88777776654
No 45
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.39 E-value=11 Score=32.62 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSK 379 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~ 379 (604)
.+.+++.++.....++..+...+..++.....
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~ 44 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTK 44 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 46
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.58 E-value=9.7 Score=31.46 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046695 498 DRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMV 539 (604)
Q Consensus 498 ~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl 539 (604)
..+...+..........+..+..|++.+..++..++.+...+
T Consensus 23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444333333333333333
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.09 E-value=17 Score=40.10 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHH
Q 046695 570 AIRQLCFSLEHY 581 (604)
Q Consensus 570 AIrQlcfslehy 581 (604)
-|+|+-|.||.-
T Consensus 234 ei~Qm~mvLE~~ 245 (562)
T 3ghg_A 234 DMPQMRMELERP 245 (562)
T ss_dssp ------------
T ss_pred hhhcEEEEEEec
Confidence 478888888864
No 48
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.89 E-value=13 Score=31.34 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 046695 476 IAERDKHIENLNRSLDSLKAERDRLESD 503 (604)
Q Consensus 476 l~e~~~~Le~L~~ek~~Le~el~~Leqe 503 (604)
+++.......|.+.+..++..+..+...
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.29 E-value=21 Score=37.88 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=4.4
Q ss_pred HHHHhhhHHH
Q 046695 571 IRQLCFSLEH 580 (604)
Q Consensus 571 IrQlcfsleh 580 (604)
|+|.-|.||.
T Consensus 238 ~~Qm~~~LE~ 247 (390)
T 1deq_A 238 MQQTKMVLET 247 (390)
T ss_pred hhhheeeecc
Confidence 3444444443
No 50
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.24 E-value=16 Score=30.81 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 511 MDQMEKHLQQLHMEHT 526 (604)
Q Consensus 511 I~emE~~L~qLr~E~e 526 (604)
+.+.+.....|...+.
T Consensus 58 l~eaEe~~~~L~~~K~ 73 (89)
T 3bas_A 58 MKQLEDKVEELLSKNY 73 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4444444444444333
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.12 E-value=12 Score=33.35 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHhhh
Q 046695 351 TLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTS----LSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 351 qLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~q----lq~leeeI~eLk~~l~d~eekl 412 (604)
-|+.+|..++.-+...+.+-..=..-+..|...|...+++ +++++.+|..|++.+.++..++
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556665555555555455555566666666666655 5555555555555555544443
No 52
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.10 E-value=4.6 Score=36.95 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=16.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046695 421 AEILGLYEEKACLVEQLREWESRGRSLEDELRIIKT 456 (604)
Q Consensus 421 ~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~ 456 (604)
.+-+.+..++..|+..+.+.+..+.+++.++..++.
T Consensus 96 ~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 96 MEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777766666543
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.10 E-value=16 Score=40.15 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 046695 330 SEAEIASLKQEVE 342 (604)
Q Consensus 330 se~eI~~Lk~EL~ 342 (604)
+...|+.|++.|+
T Consensus 62 ltkrINELKnqLE 74 (562)
T 3ghg_A 62 FTNRINKLKNSLF 74 (562)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 54
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=81.68 E-value=19 Score=31.96 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046695 392 SDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESR 443 (604)
Q Consensus 392 q~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~ 443 (604)
+.+...+..-+..+.++.+.|+..+...+.++.+|..-...+..+|..+...
T Consensus 48 ~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~e 99 (112)
T 1x79_B 48 SALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKD 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333344444444444445555544444444444433333
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.66 E-value=26 Score=37.39 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=2.9
Q ss_pred HHHhHHHH
Q 046695 422 EILGLYEE 429 (604)
Q Consensus 422 ei~~LqEk 429 (604)
++...+.+
T Consensus 354 ~~~~~~~~ 361 (487)
T 3oja_A 354 QVTLRKQA 361 (487)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 56
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=80.12 E-value=27 Score=29.84 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDD 509 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~ 509 (604)
++..++.+=+.+-..|..|.+++..+..++..++.+....+.
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444444444444444444444443333
No 57
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.94 E-value=23 Score=31.36 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=30.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHH
Q 046695 366 WKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLV 434 (604)
Q Consensus 366 i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe 434 (604)
|+.+-+.-..+|..|..++..-...+.++......++.++.+.-.++..-..++.-++.+|+....+|.
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 455555555666666666665555555555555555555555544444433334444555555444443
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.74 E-value=32 Score=30.36 Aligned_cols=36 Identities=17% Similarity=0.013 Sum_probs=17.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 046695 423 ILGLYEEKACLVEQLREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 423 i~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~E~ 458 (604)
|..|...+...+.-|..+...|..++.+|.+....+
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444545555555555555544433
No 59
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=78.67 E-value=29 Score=29.30 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 502 SDVISRDDRMDQMEKHLQQLHMEHTELI 529 (604)
Q Consensus 502 qe~~s~r~~I~emE~~L~qLr~E~e~le 529 (604)
.........|..++..+..++.+..++.
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433333
No 60
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=77.23 E-value=13 Score=32.52 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 492 SLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEK 555 (604)
Q Consensus 492 ~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~ 555 (604)
.|.++.+.+.=++..++..+.+++..+.+++++.......+...+.....|+.++..+...+..
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777777888888889999999988888888888888888888888888888743
No 61
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.91 E-value=34 Score=29.11 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=14.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 046695 383 RIKSLKTSLSDRDHEVRDLKMAVSDAEQK 411 (604)
Q Consensus 383 eI~eLk~qlq~leeeI~eLk~~l~d~eek 411 (604)
+|+.|+.++.+.=+.|..|+++=..++.+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~ 38 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAE 38 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444333
No 62
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.10 E-value=56 Score=35.60 Aligned_cols=54 Identities=4% Similarity=0.137 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 476 IAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELI 529 (604)
Q Consensus 476 l~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le 529 (604)
|.+++..|..|...-.....-+..+...+..+...+.+++..+.+...++++..
T Consensus 102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 333333333333333333334444444455555555555555544444443333
No 63
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=75.23 E-value=53 Score=30.54 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 330 SEAEIASLKQEVESNRSEKIQTLQNQLQLAQKDIATWK 367 (604)
Q Consensus 330 se~eI~~Lk~EL~sl~~~kieqLq~eLe~~q~eie~i~ 367 (604)
....|..|+.++..+ ..++.++..++....+.++.++
T Consensus 66 ~~~~I~~L~~El~~l-~~ki~dLeeel~eK~K~~e~l~ 102 (152)
T 3a7p_A 66 LLNTLAILQKELKSK-EQEIRRLKEVIALKNKNTERLN 102 (152)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544 4455555555555444444444
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.06 E-value=11 Score=33.74 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHH
Q 046695 396 HEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLRE 439 (604)
Q Consensus 396 eeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~e 439 (604)
..|..|+..+..+...+...+..-.-.+.++...++.|+.+|.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443444444455555555555555553
No 65
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=74.66 E-value=23 Score=31.67 Aligned_cols=67 Identities=27% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKG---AEDAHRMVGELRLKAKELEEEIEKQRVV 559 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~---l~elk~kl~ELK~rv~eLeEeve~qk~~ 559 (604)
++..|..|+.++...+......-.+...|+.+.+.+... ...+..++.+...+....++++-++|.+
T Consensus 45 l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe~ 114 (120)
T 3i00_A 45 LKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEK 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333444444444433221 1122333444444555555555555543
No 66
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=72.87 E-value=25 Score=34.98 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 046695 349 IQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQ 410 (604)
Q Consensus 349 ieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~ee 410 (604)
++.|.=+...+..+|.+|..|++....-...+..+|+.+...-..+++.|..++..+.++++
T Consensus 165 LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 165 LEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444566667777777777777666677777777777777777777777766665543
No 67
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=71.89 E-value=61 Score=34.30 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=11.8
Q ss_pred cccccccCCCCCCchhHHHhHHHHHHH
Q 046695 15 HSWWWDSHISPKNSKWLAENLEEMDQS 41 (604)
Q Consensus 15 ~~~~~~sh~~~~~~~wl~~~l~~~~~~ 41 (604)
..+||. .+....+++.-+.+.+.+
T Consensus 21 ltvW~~---~~~~~~~~~~~i~~Fe~~ 44 (471)
T 3mq9_A 21 LVIWIN---GDKGYNGLAEVGKKFEKD 44 (471)
T ss_dssp EEEECC---TTSCHHHHHHHHHHHHHH
T ss_pred EEEEeC---CCCccHHHHHHHHHHhhC
Confidence 455543 233345566555555443
No 68
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.41 E-value=1.1e+02 Score=32.22 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.2
Q ss_pred HHHHHH
Q 046695 433 LVEQLR 438 (604)
Q Consensus 433 Le~eL~ 438 (604)
|+++|.
T Consensus 402 ~~~~~~ 407 (471)
T 3mq9_A 402 LQQELT 407 (471)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 69
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=70.02 E-value=65 Score=29.31 Aligned_cols=17 Identities=12% Similarity=0.138 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046695 351 TLQNQLQLAQKDIATWK 367 (604)
Q Consensus 351 qLq~eLe~~q~eie~i~ 367 (604)
..+.+|+.+-+.+.+-+
T Consensus 29 EnqeEL~iVgkML~EEq 45 (167)
T 4gkw_A 29 ENQEELEIVGNMLREEQ 45 (167)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 70
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.91 E-value=57 Score=34.58 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 046695 330 SEAEIASLKQE 340 (604)
Q Consensus 330 se~eI~~Lk~E 340 (604)
+...|..|++.
T Consensus 65 ~~~rIe~L~~~ 75 (390)
T 1deq_A 65 FTSRINKLRDS 75 (390)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 71
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=69.58 E-value=50 Score=27.80 Aligned_cols=9 Identities=11% Similarity=-0.053 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 046695 430 KACLVEQLR 438 (604)
Q Consensus 430 ~~sLe~eL~ 438 (604)
+..++..+.
T Consensus 74 ~e~i~~~i~ 82 (107)
T 1fxk_A 74 LETLQLREK 82 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 72
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=68.18 E-value=50 Score=27.32 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=2.1
Q ss_pred HHHHHH
Q 046695 431 ACLVEQ 436 (604)
Q Consensus 431 ~sLe~e 436 (604)
++|+..
T Consensus 11 ~sLE~~ 16 (84)
T 1gk4_A 11 ESLERQ 16 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 73
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=67.33 E-value=53 Score=27.21 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHhh
Q 046695 446 SLEDELRIIKTQK 458 (604)
Q Consensus 446 sLe~eIkql~~E~ 458 (604)
+|+..|...+...
T Consensus 12 sLE~~l~e~e~~~ 24 (84)
T 1gk4_A 12 SLERQMREMEENF 24 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 74
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=66.92 E-value=55 Score=27.28 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=4.4
Q ss_pred HHHHHHHhHHH
Q 046695 499 RLESDVISRDD 509 (604)
Q Consensus 499 ~Leqe~~s~r~ 509 (604)
.|+.++.+.|.
T Consensus 67 ~Le~EIatYRk 77 (86)
T 1x8y_A 67 ALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 33334444443
No 75
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.76 E-value=56 Score=27.32 Aligned_cols=27 Identities=15% Similarity=0.312 Sum_probs=10.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHhHHHHHH
Q 046695 486 LNRSLDSLKAERDRLESDVISRDDRMD 512 (604)
Q Consensus 486 L~~ek~~Le~el~~Leqe~~s~r~~I~ 512 (604)
+...++.+..+...|.++...+...|.
T Consensus 46 ~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 46 AQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443333
No 76
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.61 E-value=67 Score=34.39 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENL 486 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L 486 (604)
+++++..++..+...|...
T Consensus 49 elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 49 QATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444433
No 77
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=65.68 E-value=39 Score=29.87 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 046695 430 KACLVEQLR 438 (604)
Q Consensus 430 ~~sLe~eL~ 438 (604)
...++..+.
T Consensus 10 ~q~l~~~~~ 18 (133)
T 1fxk_C 10 LNIYQSQVE 18 (133)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=65.65 E-value=35 Score=28.38 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHhh
Q 046695 446 SLEDELRIIKTQK 458 (604)
Q Consensus 446 sLe~eIkql~~E~ 458 (604)
++..+++.++.+.
T Consensus 10 ~~~~klq~~E~rN 22 (79)
T 3cvf_A 10 ETQQKVQDLETRN 22 (79)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3344444444443
No 79
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=63.60 E-value=5.1 Score=31.04 Aligned_cols=44 Identities=36% Similarity=0.406 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhh-----------hHHHHHhhHHHHHHHHhcC
Q 046695 551 EEIEKQRVVILEGAEEKREAIRQLCF-----------SLEHYRSGYISLRKAVIGH 595 (604)
Q Consensus 551 Eeve~qk~~i~~~aEeKreAIrQlcf-----------slehyR~~y~~L~~~~~gh 595 (604)
+++--|+.+ .+-|=+|--||||||= -.|-+-+..++|..-|-|.
T Consensus 9 eriaiqrsm-aeealgklkairqlcgaedssdssdmqeveiwtnrikeledwlwge 63 (67)
T 2nr5_A 9 ERIAIQRSM-AEEALGKLKAIRQLCGAEDSSDSSDMQEVEIWTNRIKELEDWLWGE 63 (67)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHTTTTTCC----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhCCccCCcchhhHHHHHHHHHHHHHHHHhhcC
Confidence 444445544 3556789999999994 3567778888888777775
No 80
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=63.53 E-value=1.7e+02 Score=31.76 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=10.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 046695 497 RDRLESDVISRDDRMDQMEKHLQQ 520 (604)
Q Consensus 497 l~~Leqe~~s~r~~I~emE~~L~q 520 (604)
+..|..-+...+.+|+.||..|..
T Consensus 134 IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 134 IKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455554433
No 81
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=60.98 E-value=67 Score=26.82 Aligned_cols=48 Identities=8% Similarity=0.182 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695 472 LKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQ 519 (604)
Q Consensus 472 lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~ 519 (604)
|-+++.+++-.+.+|..++...+.++...+.++..+...+...+..+.
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~ 71 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHH
Confidence 333344444444444444444444444444333333333333333333
No 82
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=58.98 E-value=1.1e+02 Score=27.96 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 427 YEEKACLVEQLREWES 442 (604)
Q Consensus 427 qEk~~sLe~eL~ele~ 442 (604)
.+...++...+.+...
T Consensus 99 ~e~~e~~~~~l~~~~e 114 (155)
T 2oto_A 99 EEKKEALELAIDQASR 114 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 83
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=58.09 E-value=30 Score=28.53 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHhhhhH
Q 046695 393 DRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESRGRSL 447 (604)
Q Consensus 393 ~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~i~sL 447 (604)
+++.+|.+|+..+...+.-+ ..++..+.+++..+..|...+..+..++..+
T Consensus 11 ~le~Ri~~LE~klAfqE~tI----eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQAL----TELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555544443 2244445555555555555555444444433
No 84
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=57.97 E-value=91 Score=26.81 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 315 ALMEELRITKEKLMLSEAEIASLKQEVESN 344 (604)
Q Consensus 315 ~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl 344 (604)
-|+.+|..+..-|...+.+.+.-+..+..|
T Consensus 22 lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL 51 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQANSCNLTVVTL 51 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888877776665
No 85
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.49 E-value=79 Score=33.88 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046695 532 AEDAHRMVGELRLKAKELEE 551 (604)
Q Consensus 532 l~elk~kl~ELK~rv~eLeE 551 (604)
+.....++..|+..|..|..
T Consensus 114 ~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 114 YNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555544444
No 86
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=53.71 E-value=1.1e+02 Score=26.32 Aligned_cols=20 Identities=20% Similarity=0.048 Sum_probs=7.9
Q ss_pred HHHHHHhhhhHHHHHHHHHH
Q 046695 437 LREWESRGRSLEDELRIIKT 456 (604)
Q Consensus 437 L~ele~~i~sLe~eIkql~~ 456 (604)
|...+..|..+...|.+...
T Consensus 18 L~~kq~~id~lke~~~q~~~ 37 (94)
T 3jsv_C 18 LVAKQELIDKLKEEAEQHKI 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 33333333344444444433
No 87
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=52.98 E-value=58 Score=26.65 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046695 350 QTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSD 407 (604)
Q Consensus 350 eqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d 407 (604)
+-|-=+-..+..+|.+|..|++....-...+..+|+.+...-..+++.+..++..+.+
T Consensus 10 eml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 10 EFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333444555666666666666666666666666666666666666666555554444
No 88
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=52.94 E-value=2.4e+02 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHhhhHHHHHhhHHHHHH
Q 046695 564 AEEKREAIRQLCFSLEHYRSGYISLRK 590 (604)
Q Consensus 564 aEeKreAIrQlcfslehyR~~y~~L~~ 590 (604)
...+-..+.+||...+.|-++|..|..
T Consensus 317 ~~~~~~~~~~L~~~Y~~f~~aY~~lL~ 343 (413)
T 4hpq_C 317 CLEDIRQTRNLLDFYANFERSYHNLLK 343 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999743
No 89
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=52.36 E-value=1.1e+02 Score=26.05 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHH
Q 046695 375 KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEK 416 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eK 416 (604)
++...|...++.+..+-..++..|.+++..+.++-.++..++
T Consensus 25 kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~Ek 66 (101)
T 1d7m_A 25 KQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEK 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 344445556666667777777888888888887777776554
No 90
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.93 E-value=98 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Q 046695 541 ELRLKAKELEEEIEKQRVVILEGAE 565 (604)
Q Consensus 541 ELK~rv~eLeEeve~qk~~i~~~aE 565 (604)
..+..+..|..+++++|..|..+-+
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666666666655544
No 91
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=51.33 E-value=1.1e+02 Score=30.43 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 046695 446 SLEDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQ 520 (604)
Q Consensus 446 sLe~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~q 520 (604)
.|..+...+..++ + -+..+-.-...+|.+++..|..|..-+..+.+++..|+++=..+...+..+++.|.-
T Consensus 153 ~Lkk~~~~i~~~L---e-lL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief 223 (242)
T 3uux_B 153 ALKSFSQTLVNSL---E-FLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDF 223 (242)
T ss_dssp HHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---H-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444 3 345555555667777777777777777777777766666666555555555555543
No 92
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=51.20 E-value=32 Score=38.27 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhHHH---HHhhHHHHHHHHhcCC
Q 046695 538 MVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSLEH---YRSGYISLRKAVIGHK 596 (604)
Q Consensus 538 kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfsleh---yR~~y~~L~~~~~gh~ 596 (604)
+-..++.++.+|..+++-.|. ++|.=++-.| .=|- =|+-|+.||++=+|++
T Consensus 512 kn~~lq~qL~~L~~el~~~r~------~~k~t~~D~l--h~en~~~GrdKykTLr~ir~Gnt 565 (575)
T 2i1j_A 512 RNERLHNQLKALKQDLARSCD------ETKETAMDKI--HRENVRQGRDKYKTLREIRKGNT 565 (575)
T ss_dssp HCHHHHHHHHHHHHHHHTTBC------GGGCCHHHHH--HHHHHHTTCCHHHHHHHHTCSCH
T ss_pred hhHHHHHHHHHHHHHHHHHhh------hhhcchhHHH--HHHhhhcCchHHHHHHHHhcCCc
Confidence 344566666666666654443 3444443333 1122 3566999999999984
No 93
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=50.81 E-value=79 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 046695 359 AQKDIATWKSKLNSERKEVSKLQERIKSLKTS 390 (604)
Q Consensus 359 ~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~q 390 (604)
+.++...+.-+|-....+++.|+.++..-...
T Consensus 38 lEnErlQyEkKLKsTK~El~~Lq~qLe~kd~e 69 (81)
T 3qh9_A 38 LENERNQYEWKLKATKAEVAQLQEQVALKDAE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHH
Confidence 33333344444444444444444444443333
No 94
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=50.35 E-value=1e+02 Score=25.51 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 479 RDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHL 518 (604)
Q Consensus 479 ~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L 518 (604)
+...++.|..++..+..++..+.+-......+|.+++.++
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555554444
No 95
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.67 E-value=48 Score=26.08 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=23.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046695 526 TELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILE 562 (604)
Q Consensus 526 e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~ 562 (604)
..+......+.....+|+.++..|+.++.-+|..|.+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555556667777777777777777766654
No 96
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=47.97 E-value=2.4e+02 Score=30.65 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 046695 540 GELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 540 ~ELK~rv~eLeEeve~qk~~i 560 (604)
..|+..+..+...|..++..|
T Consensus 166 ~~l~~~~~~~~~~i~~l~~~~ 186 (461)
T 3ghg_B 166 RVLRSILENLRSKIQKLESDV 186 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 97
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.57 E-value=37 Score=36.05 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTS 390 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~q 390 (604)
+...++..++.++.++..+..++..+......|..++.+++..
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444455555555555666666666667777777766643
No 98
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=46.25 E-value=2.7e+02 Score=30.28 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDV 504 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~ 504 (604)
.+|.-++..+...-..|..|......+..+++.|+.++
T Consensus 118 ~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 118 RRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333444444444444444444444444
No 99
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=46.21 E-value=99 Score=27.83 Aligned_cols=75 Identities=24% Similarity=0.303 Sum_probs=39.2
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhhhhhhhcccCCCChHHHHHHHHhhHHH---HHHHHHhhhhcHHHHHHHHHHHhh
Q 046695 190 GLQRKVNELETELREAKEKLHSQEERIADESMKGAKNENPEALFARIVGYEKK---LRLANEKIHISNEEILRLKIELQK 266 (604)
Q Consensus 190 ~l~~~~~~le~e~~~~~~k~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~e---l~~~n~~~~~~e~ei~~lk~ele~ 266 (604)
.|..+|.+|+-+..++..++..+.+++.+- +-.++-...+.+....-+.+ |..++.++-.++.+|+.|..++..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~---y~ke~~~~~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESED---YAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999888887765431 11111000122222222222 234555555566666666666655
Q ss_pred h
Q 046695 267 Y 267 (604)
Q Consensus 267 ~ 267 (604)
+
T Consensus 87 ~ 87 (125)
T 2pms_C 87 A 87 (125)
T ss_dssp C
T ss_pred H
Confidence 4
No 100
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.82 E-value=36 Score=24.14 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVIL 561 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i~ 561 (604)
+.++.+|.+|-.+...|+.+|.++|..+-
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 45667788888888888888888887653
No 101
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.75 E-value=1e+02 Score=26.83 Aligned_cols=45 Identities=11% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMD 512 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~ 512 (604)
...+++-+..+....++.+....+.+...+..|...+..++.-|.
T Consensus 45 ~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 45 QLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666666666666666655554
No 102
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.50 E-value=52 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046695 376 EVSKLQERIKSLKTSLSDRDHEVRDLKMAVS 406 (604)
Q Consensus 376 ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~ 406 (604)
++..|..+|..|......+..++..|+..+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555554
No 103
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=43.41 E-value=2.2e+02 Score=26.89 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIK 530 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~ 530 (604)
+|..+....+.+...|..+...+..|...+.....+.-..+..|+.+.-+|-+|++.+.....
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~ 152 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLV 152 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 334444455555556666666666666666666666666666666666666666666655443
No 104
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.33 E-value=32 Score=38.34 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Q 046695 73 HVEEFYRMYRSLAERYDHVTGEL 95 (604)
Q Consensus 73 ~v~~~~~~y~~laeryd~~~~el 95 (604)
+..+..+.|-.+.-+.|-+.|.+
T Consensus 93 l~d~~t~~LlYlQvk~dIl~G~l 115 (575)
T 2i1j_A 93 LIQEITLKLFYLQVKNAILSDEI 115 (575)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTSS
T ss_pred cCCHHHHHHHHHHHHHHHhCCCC
Confidence 44566666777777777776654
No 105
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.55 E-value=68 Score=34.05 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELR 543 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK 543 (604)
++.++..|.++...+...|..++..+.++.....+.+.....++..+.+++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444444444433333333444444443
No 106
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.03 E-value=90 Score=30.00 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695 370 LNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 370 LE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekl 412 (604)
++....-|.+|+.++..|.++++..+.+|..|+..+..+.++.
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333344555555555555555555555555555555444433
No 107
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=39.41 E-value=1.3e+02 Score=26.21 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046695 375 KEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESR 443 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~ 443 (604)
..+.+|+.+|.....+|-.....+.+.+.++..--..+ .+..+.+=+..+++|+.+|.++.+.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDev------NK~tl~~R~~~Vsalq~KiaeLKrq 97 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDV------NKSTLQNRRAAVSTLETKLGELKRQ 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777666666555555555444211111 2334444455556666665544333
No 108
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=39.02 E-value=95 Score=25.75 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=9.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHhh
Q 046695 437 LREWESRGRSLEDELRIIKTQK 458 (604)
Q Consensus 437 L~ele~~i~sLe~eIkql~~E~ 458 (604)
+..+..+|..|+.+|..++.++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444
No 109
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=38.96 E-value=2e+02 Score=25.90 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=15.4
Q ss_pred hhhhcHHHHHHHHHHHhhhccccchhhh
Q 046695 249 KIHISNEEILRLKIELQKYNSSETNNYL 276 (604)
Q Consensus 249 ~~~~~e~ei~~lk~ele~~~~~~~~~~~ 276 (604)
++-.++.+|+.|...+..+..++.++|.
T Consensus 14 KvAElekkv~~lek~lk~~~e~d~e~y~ 41 (125)
T 2pms_C 14 KIAELENQVHRLEQELKEIDESESEDYA 41 (125)
T ss_dssp HHHHHHHHHHHHHHHTTTTCC-------
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 3444666888888888888777777665
No 110
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.09 E-value=1.6e+02 Score=32.18 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVS 406 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~ 406 (604)
.|..+.+.+++++..++.++.+++..+.
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555444
No 111
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.72 E-value=1.8e+02 Score=27.84 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 312 KVKALMEELRITKEKLMLSEAEIASLKQEVESN 344 (604)
Q Consensus 312 kl~~L~eEL~~~~eeL~~se~eI~~Lk~EL~sl 344 (604)
-|.+|+.|...+.++|.....+|..|+.++.++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl 53 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSL 53 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 112
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=36.58 E-value=1.8e+02 Score=24.12 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046695 493 LKAERDRLESDVISRDDRMDQMEKHLQQLHME 524 (604)
Q Consensus 493 Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E 524 (604)
+...+..+..++..+|+.|++...+|.++...
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555444443
No 113
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=36.30 E-value=3.6e+02 Score=27.37 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.5
Q ss_pred HHHHHHHHhh
Q 046695 449 DELRIIKTQK 458 (604)
Q Consensus 449 ~eIkql~~E~ 458 (604)
++++++..+-
T Consensus 188 dEVRkLAe~t 197 (341)
T 3zx6_A 188 GEVRNLAQRS 197 (341)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 114
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.18 E-value=46 Score=23.25 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVIL 561 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i~ 561 (604)
+.+..++.+|-.+-.+|+.+|.++|..+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34667888888888899999998887654
No 115
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=35.84 E-value=1.5e+02 Score=31.92 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKMAVSD 407 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~~l~d 407 (604)
.|..+.+.++.++..++.++.+++..+..
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555543
No 116
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.25 E-value=1.3e+02 Score=24.75 Aligned_cols=31 Identities=10% Similarity=0.107 Sum_probs=12.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Q 046695 382 ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKI 412 (604)
Q Consensus 382 eeI~eLk~qlq~leeeI~eLk~~l~d~eekl 412 (604)
..|..|+..+-..+.+|..|...+..+.+++
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333
No 117
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=34.10 E-value=1.4e+02 Score=24.39 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQL 521 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qL 521 (604)
+-+-...+|.+++..|..|..-+..+-+.+..++++=......+..+++.|..+
T Consensus 15 rKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 15 QKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333445677778888888888888888888888877777766666666665544
No 118
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.08 E-value=2e+02 Score=23.80 Aligned_cols=6 Identities=17% Similarity=0.318 Sum_probs=2.1
Q ss_pred HHHHHH
Q 046695 354 NQLQLA 359 (604)
Q Consensus 354 ~eLe~~ 359 (604)
++|..-
T Consensus 35 ~EL~~G 40 (78)
T 3iv1_A 35 EDLKKG 40 (78)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
No 119
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=32.90 E-value=2.4e+02 Score=24.26 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 046695 375 KEVSKLQERIKSLKTS 390 (604)
Q Consensus 375 ~ei~~LqeeI~eLk~q 390 (604)
.-+..|..-|..-+++
T Consensus 46 qTV~tL~~SL~kekaq 61 (99)
T 3ni0_A 46 LTVVTLQESLEKKVSQ 61 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333443444433333
No 120
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.66 E-value=1.2e+02 Score=32.40 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 489 SLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEH 525 (604)
Q Consensus 489 ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~ 525 (604)
+++.|+.++..+.+...+....+.++...+..+..+.
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444444444444444433
No 121
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=32.61 E-value=4.1e+02 Score=26.99 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046695 467 GEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHT 526 (604)
Q Consensus 467 ~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e 526 (604)
.+|..++.....+...+.+|+.-...+.+++..-+.++......++.++-++-+++..+.
T Consensus 90 ~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~~pdw~~l~k~rd 149 (302)
T 2y3a_B 90 KEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSLKPDLMQLRKIRD 149 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccCChHHHHHhhccc
Confidence 467777777778888888888888889999998888888888888888888877777643
No 122
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=32.51 E-value=2.4e+02 Score=24.28 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 507 RDDRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 507 ~r~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i 560 (604)
....++.+-.+|++=+.+..++ ..+.++|=.+.--|+.++-+.|..|
T Consensus 60 h~aRlnsqQrQI~ENhkEMKq~-------aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 60 HSARLDSQQRQINENHKEMKQI-------EDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444444444444444333 3345566666666777776665544
No 123
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.66 E-value=2.2e+02 Score=23.49 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046695 319 ELRITKEKLMLSEAEIASLKQEV 341 (604)
Q Consensus 319 EL~~~~eeL~~se~eI~~Lk~EL 341 (604)
++..+-..|..++.+|..|...+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34343344444444444444444
No 124
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.21 E-value=80 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVIL 561 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i~ 561 (604)
+.+..+|.+|-.+...|+.+|.+++..+-
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 35566777777788888888888876653
No 125
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=30.90 E-value=2e+02 Score=25.36 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046695 377 VSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESR 443 (604)
Q Consensus 377 i~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~ 443 (604)
+.+|+.+|.....+|-.....+.+.+.+|..--..+ .+..+.+=+..+++|+.+|.++.+.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDev------NK~tl~~R~~~Vs~lq~KiaeLKrq 84 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDEL------NKRTLTDREGVAVSIQAKIDELKRQ 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666555555555444444111111 2334444455566666666644443
No 126
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=30.18 E-value=5.4e+02 Score=27.55 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 046695 347 EKIQTLQNQLQLAQKDIATWKSK 369 (604)
Q Consensus 347 ~kieqLq~eLe~~q~eie~i~~k 369 (604)
.+++.|..++..+..++.=+..+
T Consensus 90 ~~Le~L~qFl~d~~ee~~Wi~EK 112 (450)
T 3r6n_A 90 DHLRQLQNIIQATSREIMWINDC 112 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556655555554444433
No 127
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP: a.2.18.1
Probab=30.00 E-value=1.5e+02 Score=24.51 Aligned_cols=53 Identities=23% Similarity=0.462 Sum_probs=34.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHhhhcchHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046695 29 KWLAENLEEMDQSVKRMLKLIEEDGDSFAKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHV 91 (604)
Q Consensus 29 ~wl~~~l~~~~~~~~~~l~~i~~d~ds~a~~ae~y~~~rp~l~~~v~~~~~~y~~laeryd~~ 91 (604)
.|++..++-.+--|+.--++.++|||-=|+-|-.-|..|.+ +|+-|.-.+++-
T Consensus 13 ~Wv~tQi~ine~Am~~s~kv~eED~derAkdA~IRYESkLD----------AYqFl~gKF~Ny 65 (84)
T 1z0p_A 13 DWVKTQIQVNQLAMATSQEVAQEDGDERAKDAFIRYESKLD----------AYEFLLGKFDNY 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh----------HHHHHHHHHhhh
Confidence 47777777777777777788899999888777666766654 566666666654
No 128
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=29.87 E-value=2.4e+02 Score=23.37 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046695 376 EVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESR 443 (604)
Q Consensus 376 ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~ 443 (604)
.+.+|+.+|.....+|-.....+.+.+.+|..--..+ .+..+.+=+..+++|+.+|..+.+.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDev------NK~~~~~R~~~V~~lq~Ki~elkrq 67 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV------NKSTLQSRRAAVSALETKLGELKRE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555555544444111111 2334444455556666665544333
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.62 E-value=97 Score=33.03 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT 389 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ 389 (604)
+.+.++..++..+.+++.+..++-........|..++.+++.
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 18 RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444444444444444555555555666666666554
No 130
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.54 E-value=1.8e+02 Score=30.84 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 046695 378 SKLQERIKSLKTSLSDRDHEVRDLKMAVS 406 (604)
Q Consensus 378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~ 406 (604)
..|..+++.+++++..++.++.+++..+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554
No 131
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=29.16 E-value=95 Score=21.64 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i 560 (604)
+.+.++|.+|=.+...|+.+|.+++..+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455667777777777888887777654
No 132
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=28.96 E-value=5.2e+02 Score=27.21 Aligned_cols=101 Identities=14% Similarity=0.232 Sum_probs=66.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHh-----HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 046695 382 ERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQ-----IKAEILGLYEEKACLVEQLREWESRGRSLEDELRIIKT 456 (604)
Q Consensus 382 eeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~-----l~~ei~~LqEk~~sLe~eL~ele~~i~sLe~eIkql~~ 456 (604)
+.+..|+.++-+.+..+.+.+-++.++.=-++.+-.. -.+.+-++.+.+.+++..+..-+.-|=.|..+|--+..
T Consensus 479 pdvsdlnqqitekenalkevkgayrealfsyfeeyqkgegkwdqakldqlknqvdgyeksikkqesaiyelhnqidalrk 558 (761)
T 4fye_A 479 PDVSDLNQQITEKENALKEVKGAYREALFSYFEEYQKGEGKWDQAKLDQLKNQVDGYEKSIKKQESAIYELHNQIDALRK 558 (761)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777777776666555444443322 56778888899999999999888888888888877766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 457 QKTELEERIVGEIEQLKASIAERDKHIENLNR 488 (604)
Q Consensus 457 E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ 488 (604)
.. -.+..++|+...+++ .++|.-+..
T Consensus 559 ay---ytehkgqinkalqel---keqispviq 584 (761)
T 4fye_A 559 AY---YTEHKGQINKALQEL---KEQISPVIQ 584 (761)
T ss_dssp HH---HHHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred HH---HHhhhhhHHHHHHHH---HHhcChhhc
Confidence 65 334666776654443 444444433
No 133
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.69 E-value=62 Score=32.47 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046695 515 EKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRV 558 (604)
Q Consensus 515 E~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~ 558 (604)
+..+++|+.+...+.....-+...+.+++.++..|.+++++++.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566777777777766666777777777777788888777653
No 134
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=28.59 E-value=2.5e+02 Score=24.09 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhchHHHhHHHHHHhHHHHHHHHHHHHHHHHHh
Q 046695 377 VSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIFPEKAQIKAEILGLYEEKACLVEQLREWESR 443 (604)
Q Consensus 377 i~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls~eKa~l~~ei~~LqEk~~sLe~eL~ele~~ 443 (604)
+.+|+.+|.....+|-.....+.+.+.+|..--..+ .+..+.+=+..+++|+.+|..+.+.
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDev------Nk~~~~~R~~~V~~lq~Ki~elkr~ 67 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDV------NKSTLQSRRAAVSALETKLGELKRE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555555555444444111111 2334444455555565555543333
No 135
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=28.34 E-value=1.1e+02 Score=20.72 Aligned_cols=30 Identities=37% Similarity=0.402 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDV 504 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~ 504 (604)
+|..++++|+.+.+. ...++-++..|++.+
T Consensus 3 eiaalkqeiaalkke-------iaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKE-------IAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHccc
Confidence 455555555544333 333444444444443
No 136
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.78 E-value=1.2e+02 Score=20.52 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 046695 377 VSKLQERIKSLKTSLSDRDHEVRDLKM 403 (604)
Q Consensus 377 i~~LqeeI~eLk~qlq~leeeI~eLk~ 403 (604)
++.|..+|.-++.++..+.-+|..|++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444555555555555445554443
No 137
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.70 E-value=3.3e+02 Score=24.43 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.1
Q ss_pred HHHHHH
Q 046695 473 KASIAE 478 (604)
Q Consensus 473 k~el~e 478 (604)
...+.+
T Consensus 39 ~~~~~e 44 (151)
T 2zdi_C 39 KAEVQT 44 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 138
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.95 E-value=1.2e+02 Score=31.41 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 538 MVGELRLKAKELEEEI 553 (604)
Q Consensus 538 kl~ELK~rv~eLeEev 553 (604)
++.+|+.+|..|+..+
T Consensus 41 ~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 41 FVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 139
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.92 E-value=98 Score=23.64 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHH
Q 046695 379 KLQERIKSLKTSLSDRDHEVRDLKM 403 (604)
Q Consensus 379 ~LqeeI~eLk~qlq~leeeI~eLk~ 403 (604)
.|+.++.+|+.++..+..++.+|+.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444333
No 140
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=26.77 E-value=2.6e+02 Score=22.77 Aligned_cols=26 Identities=8% Similarity=0.258 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046695 498 DRLESDVISRDDRMDQMEKHLQQLHM 523 (604)
Q Consensus 498 ~~Leqe~~s~r~~I~emE~~L~qLr~ 523 (604)
..|..++..++.+|..++..+.-..+
T Consensus 21 ~~Lr~eL~~Ke~eI~~L~e~i~lk~k 46 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRLKEVIALKNK 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444444444333333
No 141
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.66 E-value=1e+02 Score=21.56 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVIL 561 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i~ 561 (604)
+.+.+++.+|=.+-++|+.+|+++|..+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34556666776777778888888777654
No 142
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=26.64 E-value=83 Score=29.02 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHH
Q 046695 503 DVISRDDRMDQMEK 516 (604)
Q Consensus 503 e~~s~r~~I~emE~ 516 (604)
++..-|..-..++.
T Consensus 123 DLeASReAKKqlEa 136 (146)
T 2xnx_M 123 DLDASREAKKQVEK 136 (146)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 143
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=26.42 E-value=5.5e+02 Score=26.42 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhc
Q 046695 338 KQEVESNRSEKIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQKIF 413 (604)
Q Consensus 338 k~EL~sl~~~kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eekls 413 (604)
..-+..+ ...+.+.+...+.+.+.+..++.++..-... +......+...+..-...|..|+..+......+.
T Consensus 122 ~~~L~~L-~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~---f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 122 KEGITDL-RGEIQQNQKYAQQLIEELTKLRDSIGHDVRA---FGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh---HHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3334444 4556666666666666777776665533322 2222333333333333334444444444444443
No 144
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.38 E-value=1.1e+02 Score=21.38 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i 560 (604)
+.+.+++.+|=.+-..|+.+|.++|..+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3455566666666677777777777654
No 145
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.13 E-value=6.2e+02 Score=26.95 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhH
Q 046695 536 HRMVGELRLKAKELEEEIEKQRVVILEGAEEKREAIRQLCFSL 578 (604)
Q Consensus 536 k~kl~ELK~rv~eLeEeve~qk~~i~~~aEeKreAIrQlcfsl 578 (604)
...+..+..++..+...+... +..+-+..+.+...|+.++
T Consensus 308 ~~~l~~l~~~~~~~~~~~~~~---~~~L~~~R~~~~~~l~~~i 347 (517)
T 4ad8_A 308 ERDAGSLQADVDALHAELLKV---GQALDAAREREAEPLVDSL 347 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544222 2223344455556666554
No 146
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.02 E-value=5.9e+02 Score=27.60 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046695 316 LMEELRITKEKLMLSEAEI 334 (604)
Q Consensus 316 L~eEL~~~~eeL~~se~eI 334 (604)
|....+.++..|+.++..+
T Consensus 86 L~kye~~V~~dl~~Le~~l 104 (461)
T 3ghg_B 86 LLQQERPIRNSVDELNNNV 104 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchhhHHHHHHHHH
Confidence 4443344444444444333
No 147
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=25.66 E-value=6.3e+02 Score=26.88 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=8.5
Q ss_pred ccCCCCchHHHHHHh
Q 046695 182 FAGNGDDQGLQRKVN 196 (604)
Q Consensus 182 ~~~~~~~~~l~~~~~ 196 (604)
|-|.|.+..|-+|+-
T Consensus 18 FW~~~G~~~L~~r~~ 32 (486)
T 3haj_A 18 FWEVGNYKRTVKRID 32 (486)
T ss_dssp TTSTTTTHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 544455666666554
No 148
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=25.56 E-value=4.8e+02 Score=25.43 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 046695 448 EDELRIIKTQKTELEERIVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHM 523 (604)
Q Consensus 448 e~eIkql~~E~~e~e~~le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~ 523 (604)
+.+|+++...+ . ..+.+|......|..++..|-. .+.++..|..++...+..+...+..|..|..
T Consensus 83 e~rI~a~~a~l---~-dHE~RIt~~~~~ia~~e~Rit~-------~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 83 EARIKQLRIDV---D-DHESRITANTKAITALNVRVTT-------AEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccc---c-cHHHHhhhhhhhhhhhhheeec-------ccccchhhhhhhhhhcccccccccchhhhhh
Confidence 44555555554 3 4455555544444444444333 3333333333344444444444444444443
No 149
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.26 E-value=2.3e+02 Score=21.69 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH
Q 046695 380 LQERIKSLKTSLSDRDHEVRDLKMAV 405 (604)
Q Consensus 380 LqeeI~eLk~qlq~leeeI~eLk~~l 405 (604)
|+.++..|......+..+|..|...+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 150
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.08 E-value=3.4e+02 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 046695 504 VISRDDRMDQMEKHLQQLHMEHT 526 (604)
Q Consensus 504 ~~s~r~~I~emE~~L~qLr~E~e 526 (604)
+..+...+..+++.|.+|++.+.
T Consensus 77 l~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 77 LQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544
No 151
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=25.06 E-value=3.4e+02 Score=23.50 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 046695 427 YEEKACLVEQLREWESRGRS 446 (604)
Q Consensus 427 qEk~~sLe~eL~ele~~i~s 446 (604)
...+..+..+|......+..
T Consensus 53 ~~~le~lk~eL~~~~~el~~ 72 (107)
T 2no2_A 53 LEVLESLKQELATSQRELQV 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333
No 152
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.01 E-value=7.4e+02 Score=27.47 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 509 DRMDQMEKHLQQLHME 524 (604)
Q Consensus 509 ~~I~emE~~L~qLr~E 524 (604)
++++.|.++|..|+..
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 153
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=24.80 E-value=1.4e+02 Score=27.00 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 046695 538 MVGELRLKAKELEEEI 553 (604)
Q Consensus 538 kl~ELK~rv~eLeEev 553 (604)
.+..|++++.+++-.+
T Consensus 56 ~~d~L~lQ~esmeaal 71 (130)
T 3cl3_D 56 QVDQLRMQGQSVEAAL 71 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666655
No 154
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.52 E-value=2.1e+02 Score=21.09 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046695 509 DRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKA 546 (604)
Q Consensus 509 ~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv 546 (604)
..|-.+.++--||.+.-+.++..+.++++.++.|...|
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555544444444444433
No 155
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.48 E-value=2e+02 Score=23.18 Aligned_cols=15 Identities=47% Similarity=0.711 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 046695 539 VGELRLKAKELEEEI 553 (604)
Q Consensus 539 l~ELK~rv~eLeEev 553 (604)
...|+..+..|..++
T Consensus 52 n~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 52 NDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 156
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.30 E-value=1.3e+02 Score=20.94 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 534 DAHRMVGELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 534 elk~kl~ELK~rv~eLeEeve~qk~~i 560 (604)
.+.+++.+|=.+-..|+.+|.++|..+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445566666666677777777776654
No 157
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.22 E-value=2.7e+02 Score=23.57 Aligned_cols=63 Identities=11% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046695 497 RDRLESDVISRDDRMDQMEKHLQQLHMEHT----ELIKGAEDAHRMVGELRLKAKELEEEIEKQRVV 559 (604)
Q Consensus 497 l~~Leqe~~s~r~~I~emE~~L~qLr~E~e----~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~ 559 (604)
+...+.++...+..|+++|.+|..+-..-. .|...+...+...--|=.++.+|-.+|+.+|..
T Consensus 14 v~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 14 VQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 158
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.21 E-value=68 Score=31.82 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046695 509 DRMDQMEKHLQQLHMEHTELIKGAEDAHRMVGELRLKAKELEEEIEKQRVVILEGAE 565 (604)
Q Consensus 509 ~~I~emE~~L~qLr~E~e~le~~l~elk~kl~ELK~rv~eLeEeve~qk~~i~~~aE 565 (604)
..+.++|..++.+....+++.+......+.+..+...+.+|+..+.+.+..|-+.-|
T Consensus 6 sRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPE 62 (233)
T 2yko_A 6 SRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPE 62 (233)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCC
Confidence 334444444444444444444444455556666777778888888888887777654
No 159
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.15 E-value=1.2e+02 Score=21.21 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046695 534 DAHRMVGELRLKAKELEEEIEKQRVVIL 561 (604)
Q Consensus 534 elk~kl~ELK~rv~eLeEeve~qk~~i~ 561 (604)
.+++++.+|=.+-..|+.+|.++|..+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 4556777777777888888888876654
No 160
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.88 E-value=6.4e+02 Score=26.32 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046695 468 EIEQLKASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTEL 528 (604)
Q Consensus 468 eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~l 528 (604)
++..+....+.+...|..+...+..|+..+..-..+....+.+|+.+.=+|-+|++.+...
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 3444444444555555555555666666666666666666666666666666666655443
No 161
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=23.87 E-value=4.6e+02 Score=24.66 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhhchHH
Q 046695 398 VRDLKMAVSDAEQKIFPEK 416 (604)
Q Consensus 398 I~eLk~~l~d~eekls~eK 416 (604)
+.+|...+.++..++.+..
T Consensus 68 ~~~l~~~~~~l~~qL~P~~ 86 (191)
T 1nfn_A 68 MKELKAYKSELEEQLTPVA 86 (191)
T ss_dssp HHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHhcchhH
Confidence 3333444455555555543
No 162
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=23.71 E-value=81 Score=21.17 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046695 533 EDAHRMVGELRLKAKELEEEIEK 555 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~ 555 (604)
..++..+.+++.+|++|-+.+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677889999999999999876
No 163
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.46 E-value=2.8e+02 Score=24.19 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 046695 465 IVGEIEQLKASIAERDKHIENLNRSLDSLKAERDRLES 502 (604)
Q Consensus 465 le~eIs~lk~el~e~~~~Le~L~~ek~~Le~el~~Leq 502 (604)
...+|..+.+++.++...++.|.++|+=...++..++-
T Consensus 16 ~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 16 SQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666777777777777777766553
No 164
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.29 E-value=3.3e+02 Score=29.66 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=11.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Q 046695 384 IKSLKTSLSDRDHEVRDLKMAVS 406 (604)
Q Consensus 384 I~eLk~qlq~leeeI~eLk~~l~ 406 (604)
.+.++.++..++.++.+++..+.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444
No 165
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=22.82 E-value=3.7e+02 Score=23.16 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Q 046695 367 KSKLNSERKEVSKLQERIKSLKTSLSDRDHEVRDLKMAVSDAEQK 411 (604)
Q Consensus 367 ~~kLE~e~~ei~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~eek 411 (604)
..+++++-.-+..|..++..++.-+...+..|..-.+++......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~a 49 (114)
T 2xzr_A 5 EDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKA 49 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHH
Confidence 344555555566666777777777777777776666666544433
No 166
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=22.74 E-value=5.6e+02 Score=25.27 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHH
Q 046695 474 ASIAERDKHIENLNRSLDSLKAERDRLESDVISRDDRMDQMEKHLQQLHMEHTELIKGAEDAH------RMVGELRLKAK 547 (604)
Q Consensus 474 ~el~e~~~~Le~L~~ek~~Le~el~~Leqe~~s~r~~I~emE~~L~qLr~E~e~le~~l~elk------~kl~ELK~rv~ 547 (604)
+.|.++...|--|..+...++......-.++...-+.|...|..+...+..+..+...+.-++ .++..|+..+.
T Consensus 62 ddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELv 141 (234)
T 3plt_A 62 DDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELV 141 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHH
Q 046695 548 ELEEEIEKQRVVILEGAEEKREAIR 572 (604)
Q Consensus 548 eLeEeve~qk~~i~~~aEeKreAIr 572 (604)
..+-+. -+.=..+.-=||+.+|
T Consensus 142 raEae~---lvaEAqL~n~kR~~lK 163 (234)
T 3plt_A 142 RAEAES---LVAEAQLSNITREKLK 163 (234)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHh---hHHHHHHHHhHHHHHH
No 167
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=22.69 E-value=4.5e+02 Score=24.10 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSERKEVSKLQERIKSLKT 389 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e~~ei~~LqeeI~eLk~ 389 (604)
..+.+...++.+...+++|...|+.+..+...|...|.....
T Consensus 69 ~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~ 110 (152)
T 4fla_A 69 AAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQ 110 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888999999999988888888777776554444444
No 168
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=22.21 E-value=3.4e+02 Score=22.89 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046695 500 LESDVISRDDRMDQMEKHLQQLHMEH 525 (604)
Q Consensus 500 Leqe~~s~r~~I~emE~~L~qLr~E~ 525 (604)
-..++..++..+.+++.+|..++.+.
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777766666553
No 169
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=22.16 E-value=6.9e+02 Score=26.07 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=7.0
Q ss_pred HHhHHHHHHHHHHHHHH
Q 046695 423 ILGLYEEKACLVEQLRE 439 (604)
Q Consensus 423 i~~LqEk~~sLe~eL~e 439 (604)
+.++.+-...|+..+..
T Consensus 200 ~~~~~~n~~~l~~~~~~ 216 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISE 216 (373)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 33344444444444443
No 170
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.94 E-value=3.5e+02 Score=22.65 Aligned_cols=54 Identities=9% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH--H-HHHHHHHHHHHHHHhhhhh-HHHHHHHH
Q 046695 348 KIQTLQNQLQLAQKDIATWKSKLNSE--R-KEVSKLQERIKSLKTSLSD-RDHEVRDL 401 (604)
Q Consensus 348 kieqLq~eLe~~q~eie~i~~kLE~e--~-~ei~~LqeeI~eLk~qlq~-leeeI~eL 401 (604)
.+...+..++.+..-|..+....... - .....+..+|..++..+.. +..++..|
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666665555444433 1 2344555666666666655 55555443
No 171
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.85 E-value=3.4e+02 Score=22.46 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046695 514 MEKHLQQLHMEHTELIKGAEDAHRMVGELRL 544 (604)
Q Consensus 514 mE~~L~qLr~E~e~le~~l~elk~kl~ELK~ 544 (604)
|-.+|.+|+.+...|.-.+......++.++-
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 172
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.30 E-value=1.5e+02 Score=29.36 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 046695 378 SKLQERIKSLKTSLSDRDHEVRDLKMAVSDAE 409 (604)
Q Consensus 378 ~~LqeeI~eLk~qlq~leeeI~eLk~~l~d~e 409 (604)
..|.+++.++.+..+..+.+|..++..+.++.
T Consensus 16 s~le~rleei~q~eq~~ekrik~ne~sL~dL~ 47 (233)
T 2yko_A 16 SAAEDEINEIKREGKFREKRIKRNEQSLQEIW 47 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444333334444444444444433
No 173
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.97 E-value=2.5e+02 Score=21.49 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046695 540 GELRLKAKELEEEIEKQRV 558 (604)
Q Consensus 540 ~ELK~rv~eLeEeve~qk~ 558 (604)
..|+..+..|..++..++.
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 174
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.41 E-value=1.7e+02 Score=20.48 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046695 533 EDAHRMVGELRLKAKELEEEIEKQRVVI 560 (604)
Q Consensus 533 ~elk~kl~ELK~rv~eLeEeve~qk~~i 560 (604)
+.+.++|.+|=..-..|+.+|.+++..+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455666777777777777777777654
Done!