BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046696
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/586 (64%), Positives = 461/586 (78%), Gaps = 3/586 (0%)
Query: 18 VSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPV 77
S+ + KAL+FIE +T AD VQ+RVLAEILS + EYL+R+ L G + TFK +PV
Sbjct: 15 ASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPV 74
Query: 78 ITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIXXXXXXXXXXXXX 137
I YEDL+P + RIANGD S IL + PISEFLTSSGTS GERKLMPTI
Sbjct: 75 IKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSL 134
Query: 138 XMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYT 197
MPV++ +VPGLDKGK +YFLF+KSE +TPGGL+ARPVLTSYYKS FK RP+DPY YT
Sbjct: 135 LMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYT 194
Query: 198 SPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRK 257
SPNE ILC DS+QSMY+QMLCG+ + QVLR+GAVFASG +RAIRFL+ +W L +DIR
Sbjct: 195 SPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRT 254
Query: 258 GTIDPKITDPSVREAVLKILKPNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTGT 317
GT+ PKITDPSVR V +LKP+ +LAD + ECSK++W+GIITR+WPNTKY+DVIVTG
Sbjct: 255 GTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGA 314
Query: 318 MSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNR 377
M+QYIPTLDYYS GLPL CTMYASSECYFGLNLNPM PSEVSYT++P MAYFEFLP +
Sbjct: 315 MAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLP-HE 373
Query: 378 KNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFNF 437
+ P S ++ +++DL VE+G+EYELV+TTYAGLYRYRVGDIL+V GF N APQF+F
Sbjct: 374 HSSIPLS-RDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHF 432
Query: 438 VCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWEI 497
V RKNV LSIDSDKTDE ELQ AV NA+ L + S++EYTS+ADT TIPG YV++WE+
Sbjct: 433 VRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWEL 492
Query: 498 SQSGATQIPP-SVFEDCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFDKLMDYAL 556
+ P + CCL++EESLNSVYRQGRV+D SIGPLEI++V+SGTF++LMDYA+
Sbjct: 493 LVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAI 552
Query: 557 SQGASINQYKTPRCVKYAPIIELLNSKVVSNYFSPKCPKWVPGQKQ 602
S+GASINQYK PRCV + PI+ELL+S+VVS++FSP P W P +++
Sbjct: 553 SRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR 598
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 550 bits (1418), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/581 (47%), Positives = 383/581 (65%), Gaps = 18/581 (3%)
Query: 18 VSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPV 77
+ D N+ K ++ +TS +QD +L EI++ + EYLQR+ L DK FKK +P+
Sbjct: 10 IFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPI 68
Query: 78 ITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIXXXXXXXXXXXXX 137
++YED+KPY+DR+ NG+ S ++ ++ I+ FL SSGTSGG +K+MP
Sbjct: 69 VSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDL 128
Query: 138 XMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYT 197
M V+ + V G+++GK M FLF K E+ TP GL AR +SY+KS FK+RP + Y +YT
Sbjct: 129 RMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYT 188
Query: 198 SPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRK 257
SP+E ILCP++ +S+Y +LCGL Q +V+R G++FAS +RAI L+ W LC++IR
Sbjct: 189 SPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRS 248
Query: 258 GTIDPKITDPSVREAVLKILK-PNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTG 316
G + +TD + +V +L P +LAD IE C++ SWKGI+ RLWPNTKYI+ +VTG
Sbjct: 249 GHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTG 308
Query: 317 TMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVN 376
+M QY+P L+YY N LPLV T Y SSE FG+NL+P+C P +VSYT +P M+YFEF+P++
Sbjct: 309 SMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMD 368
Query: 377 RKNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFN 436
D+ V+DL DV+LG YE VVT +AGLYR RVGDI+ V GF N APQF
Sbjct: 369 GG---------DKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFK 419
Query: 437 FVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWE 496
FV R+NV LSIDSDKT+E +L AV A L L ++TSYADTST PG YV++ E
Sbjct: 420 FVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLE 479
Query: 497 ISQSGATQIPPSVFE-------DCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFD 549
+ + + FE CCL +EESL++VY++ R D SIGPLEI++V GTFD
Sbjct: 480 VDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFD 539
Query: 550 KLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFS 590
LMD+ +SQGAS QYKTPRC+K +++L + VV+ +FS
Sbjct: 540 SLMDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 272/581 (46%), Positives = 373/581 (64%), Gaps = 18/581 (3%)
Query: 18 VSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVDKGTFKKVMPV 77
+ D N+ K ++ +TS +QD +L EI++ + EYLQR+ L DK FKK +P+
Sbjct: 10 IFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPI 68
Query: 78 ITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIXXXXXXXXXXXXX 137
++YED+KPY+DR+ NG+ S ++ ++ I+ FL SSGTSGG +K P
Sbjct: 69 VSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYDL 128
Query: 138 XMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLFKDRPFDPYTNYT 197
V+ + V G+++GK FLF K E+ TP GL AR +SY+KS FK+RP + Y +YT
Sbjct: 129 RXQVITKHVKGVEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYT 188
Query: 198 SPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLEKHWPLLCNDIRK 257
SP+E ILCP++ +S+Y +LCGL Q +V+R G++FAS +RAI L+ W LC++IR
Sbjct: 189 SPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRS 248
Query: 258 GTIDPKITDPSVREAVLKILK-PNTQLADFIEAECSKESWKGIITRLWPNTKYIDVIVTG 316
G + +TD + +V +L P +LAD IE C++ SWKGI+ RLWPNTKYI+ +VTG
Sbjct: 249 GHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTG 308
Query: 317 TMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVN 376
+ QY+P L+YY N LPLV T Y SSE FG+NL+P+C P +VSYT P +YFEF+P +
Sbjct: 309 SXGQYVPXLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXD 368
Query: 377 RKNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFN 436
D+ V+DL DV+LG YE VVT +AGLYR RVGDI+ V GF N APQF
Sbjct: 369 GG---------DKNDVVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFK 419
Query: 437 FVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIPGRYVLFWE 496
FV R+NV LSIDSDKT+E +L AV A L L ++TSYADTST PG YV++ E
Sbjct: 420 FVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLE 479
Query: 497 ISQSGATQIPPSVFE-------DCCLSIEESLNSVYRQGRVSDKSIGPLEIKLVESGTFD 549
+ + + FE CCL EESL++VY++ R D SIGPLEI++V GTFD
Sbjct: 480 VDTKEGEEKETAQFELDEEALSTCCLVXEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFD 539
Query: 550 KLMDYALSQGASINQYKTPRCVKYAPIIELLNSKVVSNYFS 590
L D+ +SQGAS QYKTPRC+K +++L + VV+ +FS
Sbjct: 540 SLXDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/589 (38%), Positives = 343/589 (58%), Gaps = 23/589 (3%)
Query: 8 LLERAEHDGLVSDNNKKALKFIESVTSQADEVQDRVLAEILSCSANVEYLQRYGLNGHVD 67
+LE+ E D N+ +F E +T A +VQ + L EIL + + YLQ GLNG+
Sbjct: 7 MLEKVE----TFDMNRVIDEFDE-MTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNAT 61
Query: 68 --KGTFKKVMPVITYEDLKPYVDRIANGDCSPILCSQPISEFLTSSGTSGGERKLMPTIX 125
+ FK ++P++T +L+PY+ R+ +GD SPIL P+ SSGTS G K +P
Sbjct: 62 DPEEAFKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTD 121
Query: 126 XXXXXXXXXXXXXMPVVDQFVPGLDKGKAMYFLFIKSEAKTPGGLVARPVLTSYYKSSLF 185
++ P D GKA+ F+F + + GG+ T+ Y++ F
Sbjct: 122 ELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNF 181
Query: 186 KDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQNLQVLRVGAVFASGFIRAIRFLE 245
K + SP+E I PD +Q++Y +L G+ QV V AVFA G + A R E
Sbjct: 182 KAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFE 241
Query: 246 KHWPLLCNDIRKGTIDPKITDPSVREAVLKILKPNTQLADFIEAEC-SKESWKGIITRLW 304
+ W + DI+ G + +IT PSVR A+ K+L PN +LA+ I +C S +W G+I L+
Sbjct: 242 QVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALF 301
Query: 305 PNTKYIDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGLNLNPMCNPSEVSYTLL 364
PN KY+ I+TG+M Y+P L +Y+ LPLV Y SSE + N+ P +P E ++ ++
Sbjct: 302 PNAKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVI 361
Query: 365 PTMAYFEFLPVNRKNGEPKSLKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILK 424
P + YFEFLPV+ E +++ + LT V++G+EYE+V+T YAGLYRYR+GD++K
Sbjct: 362 PNLGYFEFLPVSETG-------EGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVK 414
Query: 425 VAGFKNKAPQFNFVCRKNVALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADT 484
V GF N PQ F+CR+N+ LSI+ DK E +LQ +V++AA LS +I+++SY D
Sbjct: 415 VIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV 474
Query: 485 STIPGRYVLFWEISQSGATQIPPSVFEDCCLSIEES-LNSVYRQGRVSDKSIGPLEIKLV 543
ST PG Y +FWEI SG T V +DCC ++ + +++ Y R K+IG LE+++V
Sbjct: 475 STDPGHYAIFWEI--SGETN--EDVLQDCCNCLDRAFIDAGYVSSRKC-KTIGALELRVV 529
Query: 544 ESGTFDKLMDYALSQGASINQYKTPRCVK--YAPIIELLNSKVVSNYFS 590
GTF K+ ++ L G+S Q+K PRCVK A ++++L VVS+YFS
Sbjct: 530 AKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFS 578
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 276 ILKPNTQLADFIEAECSKESWKGI 299
+L P +LA +EAECSK S+KG+
Sbjct: 99 VLTPTRELALHVEAECSKYSYKGL 122
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 365
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 23/165 (13%)
Query: 328 YSNGLP---LVCTMYASSECYFGLNLNPMCNPSEVSYTLLPTMAYFEFLPVNRKNGEPKS 384
+S G P L+ A S+ Y N+ + PS +T +F R + +
Sbjct: 73 FSTGTPIGFLIHNQRARSKDYD--NIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESA 130
Query: 385 LKEDQQQVLDLTDVELGQEYELVVTTYAGLYRYRVGDILKVAGFKNKAPQFNFVCRKNV- 443
++ + E+G + +G I+++ G K K FN + +
Sbjct: 131 IRVAAGAFAKMLLREIG------IVCESG--------IIEIGGIKAKNYDFNHALKSEIF 176
Query: 444 ALSIDSDKTDEVELQNAVKNAANHLSPFDASLIEYTSYADTSTIP 488
AL + ++ + +QNA+K NH S +LI S +P
Sbjct: 177 ALDEEQEEAQKTAIQNAIK---NHDSIGGVALIRARSIKTNQKLP 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,089,846
Number of Sequences: 62578
Number of extensions: 753658
Number of successful extensions: 1566
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1542
Number of HSP's gapped (non-prelim): 8
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)