Query 046697
Match_columns 187
No_of_seqs 121 out of 987
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:34:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 2.1E-24 4.6E-29 166.9 18.5 110 38-147 3-118 (148)
2 PF00407 Bet_v_1: Pathogenesis 99.8 3.5E-19 7.6E-24 138.6 15.0 106 38-144 6-118 (151)
3 PF10604 Polyketide_cyc2: Poly 99.7 1.1E-15 2.4E-20 113.8 19.3 139 35-180 1-139 (139)
4 cd07821 PYR_PYL_RCAR_like Pyra 99.7 6.7E-16 1.5E-20 114.9 17.5 137 38-180 3-140 (140)
5 cd08866 SRPBCC_11 Ligand-bindi 99.5 2.9E-12 6.3E-17 96.8 16.2 133 40-181 3-144 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.5 6.1E-12 1.3E-16 93.3 16.2 137 39-181 2-140 (140)
7 cd08862 SRPBCC_Smu440-like Lig 99.5 8.9E-12 1.9E-16 92.9 16.4 135 38-181 3-138 (138)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.4 9.5E-12 2.1E-16 93.8 15.1 139 39-181 2-142 (142)
9 cd07819 SRPBCC_2 Ligand-bindin 99.3 1.3E-10 2.8E-15 86.7 16.4 134 37-178 3-139 (140)
10 cd07822 SRPBCC_4 Ligand-bindin 99.3 2.4E-10 5.1E-15 84.9 17.0 139 38-180 2-141 (141)
11 cd07818 SRPBCC_1 Ligand-bindin 99.3 4.5E-10 9.8E-15 85.4 16.9 139 36-181 2-150 (150)
12 cd07813 COQ10p_like Coenzyme Q 99.2 3.5E-10 7.5E-15 85.2 13.4 135 40-181 3-137 (138)
13 cd07814 SRPBCC_CalC_Aha1-like 99.2 7.1E-10 1.5E-14 82.5 14.2 135 39-181 3-139 (139)
14 cd07817 SRPBCC_8 Ligand-bindin 99.2 1.1E-09 2.5E-14 81.6 14.8 132 39-180 3-138 (139)
15 cd08860 TcmN_ARO-CYC_like N-te 99.1 5.2E-09 1.1E-13 80.8 16.5 138 39-183 4-146 (146)
16 cd07812 SRPBCC START/RHO_alpha 99.1 1E-08 2.3E-13 73.8 15.9 132 40-177 3-139 (141)
17 cd07825 SRPBCC_7 Ligand-bindin 99.0 9.3E-09 2E-13 77.5 13.7 137 38-180 2-144 (144)
18 cd05018 CoxG Carbon monoxide d 98.9 3E-08 6.6E-13 74.1 13.1 137 39-179 4-143 (144)
19 cd07824 SRPBCC_6 Ligand-bindin 98.9 8.5E-08 1.8E-12 73.1 15.1 132 41-178 6-145 (146)
20 cd07823 SRPBCC_5 Ligand-bindin 98.8 1.5E-07 3.2E-12 71.8 13.0 138 41-181 4-146 (146)
21 PF03364 Polyketide_cyc: Polyk 98.7 6.1E-07 1.3E-11 66.4 11.9 127 44-176 1-130 (130)
22 PRK10724 hypothetical protein; 98.6 2.2E-06 4.8E-11 67.1 13.7 107 35-145 14-120 (158)
23 cd07820 SRPBCC_3 Ligand-bindin 98.5 8.2E-06 1.8E-10 61.4 15.0 101 40-145 3-108 (137)
24 cd08898 SRPBCC_CalC_Aha1-like_ 98.5 5.8E-06 1.3E-10 62.0 13.5 135 38-181 3-145 (145)
25 cd08899 SRPBCC_CalC_Aha1-like_ 98.5 6E-06 1.3E-10 64.0 13.1 128 36-182 11-138 (157)
26 cd08894 SRPBCC_CalC_Aha1-like_ 98.4 2.2E-05 4.7E-10 59.3 14.3 131 38-181 2-139 (139)
27 cd08893 SRPBCC_CalC_Aha1-like_ 98.4 2.2E-05 4.8E-10 58.1 13.5 130 39-181 3-136 (136)
28 cd08896 SRPBCC_CalC_Aha1-like_ 98.3 3.4E-05 7.4E-10 58.7 13.8 134 39-181 3-146 (146)
29 cd08900 SRPBCC_CalC_Aha1-like_ 98.2 0.00018 4E-09 54.4 14.9 132 39-181 3-143 (143)
30 PF06240 COXG: Carbon monoxide 98.2 3.8E-05 8.1E-10 58.5 11.1 133 42-179 3-139 (140)
31 cd07826 SRPBCC_CalC_Aha1-like_ 98.1 0.00022 4.7E-09 54.2 15.0 135 38-180 2-141 (142)
32 cd08897 SRPBCC_CalC_Aha1-like_ 98.1 0.00021 4.6E-09 53.4 13.6 124 38-181 2-133 (133)
33 COG3427 Carbon monoxide dehydr 98.1 5.6E-05 1.2E-09 58.4 10.4 100 41-144 6-108 (146)
34 COG5637 Predicted integral mem 98.0 0.0004 8.7E-09 55.4 13.6 147 24-181 58-210 (217)
35 cd08892 SRPBCC_Aha1 Putative h 98.0 0.00073 1.6E-08 50.3 14.5 122 39-180 3-125 (126)
36 cd08891 SRPBCC_CalC Ligand-bin 97.9 0.0007 1.5E-08 51.6 14.3 135 39-181 3-149 (149)
37 cd08895 SRPBCC_CalC_Aha1-like_ 97.9 0.0019 4.2E-08 49.0 16.3 130 38-180 2-145 (146)
38 cd08876 START_1 Uncharacterize 97.9 0.002 4.3E-08 51.1 16.9 140 37-179 42-194 (195)
39 PF08327 AHSA1: Activator of H 97.8 0.00057 1.2E-08 49.6 11.4 122 45-180 1-124 (124)
40 cd08901 SRPBCC_CalC_Aha1-like_ 97.8 0.0011 2.4E-08 49.8 13.3 128 39-181 3-132 (136)
41 COG3832 Uncharacterized conser 97.4 0.0069 1.5E-07 46.7 12.6 97 36-136 8-107 (149)
42 PF08982 DUF1857: Domain of un 96.7 0.069 1.5E-06 41.5 12.4 59 48-112 20-79 (149)
43 PTZ00220 Activator of HSP-90 A 96.5 0.059 1.3E-06 40.5 10.9 90 44-145 1-93 (132)
44 COG2867 Oligoketide cyclase/li 96.5 0.066 1.4E-06 41.4 10.9 137 38-184 4-140 (146)
45 cd08863 SRPBCC_DUF1857 DUF1857 95.8 0.6 1.3E-05 36.0 14.5 64 47-116 18-82 (141)
46 cd08905 START_STARD1-like Chol 94.4 2.3 4.9E-05 34.5 13.8 143 35-181 49-208 (209)
47 cd08906 START_STARD3-like Chol 93.4 3.5 7.6E-05 33.4 15.5 142 35-181 49-208 (209)
48 PF10698 DUF2505: Protein of u 91.5 5.3 0.00011 30.8 12.2 132 40-178 3-154 (159)
49 cd08877 START_2 Uncharacterize 91.3 6.6 0.00014 31.6 14.1 138 39-181 49-214 (215)
50 COG4276 Uncharacterized conser 91.2 5.6 0.00012 30.6 13.2 91 40-133 6-103 (153)
51 cd08871 START_STARD10-like Lip 90.0 9.1 0.0002 31.0 16.2 166 11-181 7-202 (222)
52 cd08873 START_STARD14_15-like 89.8 8.4 0.00018 32.1 11.5 35 40-74 81-115 (235)
53 cd08903 START_STARD5-like Lipi 89.1 11 0.00023 30.5 14.9 138 40-181 50-207 (208)
54 cd08868 START_STARD1_3_like Ch 87.9 12 0.00027 29.8 14.9 35 40-74 52-87 (208)
55 cd08913 START_STARD14-like Lip 86.0 19 0.00041 30.1 13.2 35 40-74 85-119 (240)
56 cd00177 START Lipid-binding ST 85.9 14 0.00029 28.2 16.4 35 40-74 43-77 (193)
57 cd08874 START_STARD9-like C-te 84.1 21 0.00045 29.0 15.6 34 41-74 50-83 (205)
58 cd08870 START_STARD2_7-like Li 82.2 24 0.00052 28.3 15.2 135 41-179 55-206 (209)
59 cd08911 START_STARD7-like Lipi 81.6 26 0.00056 28.2 15.5 140 36-179 46-204 (207)
60 cd08869 START_RhoGAP C-termina 80.3 28 0.0006 27.7 13.9 135 40-180 48-195 (197)
61 cd08914 START_STARD15-like Lip 75.8 46 0.00099 27.8 13.6 34 41-74 83-116 (236)
62 smart00234 START in StAR and p 74.5 39 0.00085 26.4 15.0 139 41-182 50-203 (206)
63 KOG2936 Uncharacterized conser 70.2 50 0.0011 28.6 9.3 124 34-179 171-297 (301)
64 PF05586 Ant_C: Anthrax recept 56.1 7 0.00015 27.8 1.3 45 13-61 27-74 (95)
65 cd08867 START_STARD4_5_6-like 53.4 1.1E+02 0.0024 24.2 14.8 35 40-74 50-86 (206)
66 COG4008 Predicted metal-bindin 37.2 24 0.00052 26.8 1.8 32 9-40 38-69 (153)
67 PF02922 CBM_48: Carbohydrate- 35.1 1.3E+02 0.0029 19.8 5.7 55 61-118 15-74 (85)
68 TIGR03277 methan_mark_9 putati 34.7 30 0.00064 25.4 1.9 32 9-40 37-68 (109)
69 PF12162 STAT1_TAZ2bind: STAT1 34.5 17 0.00037 19.2 0.4 14 10-23 9-22 (23)
70 PF02162 XYPPX: XYPPX repeat ( 31.5 25 0.00053 16.6 0.7 11 6-16 2-12 (15)
71 cd08904 START_STARD6-like Lipi 30.4 2.9E+02 0.0063 22.3 15.9 136 40-178 50-202 (204)
72 cd00222 CollagenBindB Collagen 28.2 1E+02 0.0022 24.7 4.2 78 44-127 3-80 (187)
73 PF10313 DUF2415: Uncharacteri 27.4 1E+02 0.0022 18.8 3.0 12 80-91 1-12 (43)
74 PF02087 Nitrophorin: Nitropho 25.4 3.5E+02 0.0076 21.6 6.8 25 95-119 49-73 (178)
75 cd08902 START_STARD4-like Lipi 25.3 3.8E+02 0.0082 21.9 15.0 34 41-74 52-85 (202)
76 cd08908 START_STARD12-like C-t 22.7 4.2E+02 0.009 21.4 14.8 133 40-180 56-202 (204)
77 cd08910 START_STARD2-like Lipi 21.4 4.3E+02 0.0092 21.1 14.3 31 41-71 54-85 (207)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.93 E-value=2.1e-24 Score=166.87 Aligned_cols=110 Identities=25% Similarity=0.368 Sum_probs=95.7
Q ss_pred EEEEEEEcCChHHHHHHhhcCCC--CccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV 114 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~--~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v 114 (187)
...+++|+||+|+||+++++|++ ++.|+|.|++|+++ |+|++||+|.|+|.+|++.++++|||+++|+++|+++|++
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~v 82 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTV 82 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEEE
Confidence 45678999999999999999994 78999999999987 8888999999999988666789999999999999999999
Q ss_pred Eecccc---CCCeeeEEEEEEecCCCceEEEEEEEE
Q 046697 115 VGGEHR---LNNYRSVTSVNEFQKGGEIYTIVTESY 147 (187)
Q Consensus 115 veg~~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~ 147 (187)
++|+++ +++|.+++++.+.+++++.++|...+.
T Consensus 83 veg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye 118 (148)
T cd07816 83 IEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYE 118 (148)
T ss_pred EecccccCceEEEEEEEEEEECCCCCEEEEEEEEEE
Confidence 999874 789999999999855566666655543
No 2
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.82 E-value=3.5e-19 Score=138.55 Aligned_cols=106 Identities=26% Similarity=0.466 Sum_probs=84.3
Q ss_pred EEEEEEEcCChHHHHHHhhcCCC--CccccccceeeEec-CCCCCC-eEEEEEEecCCCcceeeEEEEEEeCCCCeEEEE
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDN--PQKYKHFIKSCNMH-GDGGVG-SIREVTVVSGLPASTSTERLEILDDEKHILSFR 113 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~--~~~w~p~v~s~~~~-G~g~vG-~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~ 113 (187)
...++.+++||+++|++++.... |+..|..|++++++ |+|++| +||.|+|..|++.+.+|||++.+|+++++++|+
T Consensus 6 ~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y~ 85 (151)
T PF00407_consen 6 LEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITYT 85 (151)
T ss_dssp EEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEEE
Confidence 45677899999999999998554 89999999999998 998877 999999999888889999999999999999999
Q ss_pred EEeccccCCCeeeEE---EEEEecCCCceEEEEE
Q 046697 114 VVGGEHRLNNYRSVT---SVNEFQKGGEIYTIVT 144 (187)
Q Consensus 114 vveg~~p~~~y~a~~---~v~~~~~~g~~~t~~~ 144 (187)
++||++ +..|.++. ++++.+++|+.++|..
T Consensus 86 viEGd~-l~~~~~~~~~~~~~~~~~g~~v~k~t~ 118 (151)
T PF00407_consen 86 VIEGDV-LGDYKSFKSTIQKIPKGDGGCVVKWTI 118 (151)
T ss_dssp EEEETT-GTTTEEEEEEEEEEEETTSCEEEEEEE
T ss_pred EEeccc-cccEEEEEEEEEecCCCCCceEEEEEE
Confidence 999997 55555544 4444443445444433
No 3
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.73 E-value=1.1e-15 Score=113.81 Aligned_cols=139 Identities=20% Similarity=0.213 Sum_probs=110.3
Q ss_pred ceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697 35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV 114 (187)
Q Consensus 35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v 114 (187)
|++..++++|+||+++||++++|+.+...|.|.+.++++.+.+++|..+.++..... .+.+++..+|+.++.+.|++
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVAGRG---TVREEITEYDPEPRRITWRF 77 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEECSCS---EEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEecccc---ceeEEEEEecCCCcEEEEEE
Confidence 467788999999999999999999998889999999998853335666777654323 79999999998789999999
Q ss_pred EeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 115 VGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 115 veg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
. ..|+.++...+.+.+.+ +|+.++|...+.. ..+.......++.++...++..|++||+.+|
T Consensus 78 ~--~~~~~~~~~~~~~~~~~-~gt~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 78 V--PSGFTNGTGRWRFEPVG-DGTRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp E--SSSSCEEEEEEEEEEET-TTEEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E--ecceeEEEEEEEEEEcC-CCEEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7 44577889999999986 5688887766533 2233444566888899999999999999987
No 4
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.73 E-value=6.7e-16 Score=114.93 Aligned_cols=137 Identities=34% Similarity=0.517 Sum_probs=113.0
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve 116 (187)
...+++|+||+++||+++.|+.+...|.|.+.++++. +..++|+++.+++..|. .+++++.++|+.+++++|++.+
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~~~~~ 79 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSYRIVE 79 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEEEecC
Confidence 3467899999999999999999988999999999998 43358999999988764 7899999999877899999999
Q ss_pred ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
++.++.++.+.+.+.+.+++++.++|...+ +++.+........++...++.+|++|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 80 GPLPVKNYVATIRVTPEGDGGTRVTWTAEF---DPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred CCCCcccceEEEEEEECCCCccEEEEEEEE---ecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 866788899999998886556777776553 3333344567888899999999999999875
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.49 E-value=2.9e-12 Score=96.80 Aligned_cols=133 Identities=16% Similarity=0.229 Sum_probs=98.1
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeE-------EEEEEecCCCcceeeEEEEEEeCCCCeEE
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSI-------REVTVVSGLPASTSTERLEILDDEKHILS 111 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~v-------R~lt~~~g~~~~~v~ErL~~~D~~~~~~s 111 (187)
.++.|+||+++||+++.|+++...|.|.+.+|++. +.+ .+.. +.+...-. ..+..++.+.++.+++++
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~i~ 78 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKFE---ARVVLELREREEFPRELD 78 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeeee---EEEEEEEEEecCCCceEE
Confidence 46799999999999999999977999999999987 432 2221 11111011 144566777776679999
Q ss_pred EEEEeccccCCCeeeEEEEEEecC-CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 112 FRVVGGEHRLNNYRSVTSVNEFQK-GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 112 Y~vveg~~p~~~y~a~~~v~~~~~-~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
|++++|+ +..+.++..+.+.++ +++.++|..+ +++..+.....+..+++..+...|++|++.+|+
T Consensus 79 ~~~~~g~--~~~~~g~w~~~~~~~~~~t~v~~~~~---~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 79 FEMVEGD--FKRFEGSWRLEPLADGGGTLLTYEVE---VKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EEEcCCc--hhceEEEEEEEECCCCCeEEEEEEEE---EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999885 578999999999875 4566666544 344445556788888899999999999998874
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.47 E-value=6.1e-12 Score=93.28 Aligned_cols=137 Identities=14% Similarity=0.065 Sum_probs=99.2
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecC--CCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG--DGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G--~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve 116 (187)
..++.|+||+++||+++.||.+...|.|.+.+++..+ ..++|+...+.+..++..-.+.++++.+|+ ++.++|....
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~~~~ 80 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFRGSS 80 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEEecC
Confidence 3567999999999999999999889999999988872 245788888776543222256899999985 5899999876
Q ss_pred ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
+++ .+..+..+.+.+ +|+.++|..++.. ..+........+..+...++..|++||+.+|.
T Consensus 81 ~~~---~~~~~~~~~~~~-~~t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 81 GPF---PYEDTYTFEPVG-GGTRVRYTAELEP-GGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred CCc---ceEEEEEEEEcC-CceEEEEEEEEcc-chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 633 467888887775 5677776655321 11222223456677777888899999998874
No 7
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.46 E-value=8.9e-12 Score=92.94 Aligned_cols=135 Identities=16% Similarity=0.040 Sum_probs=98.5
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCC-CCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDG-GVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g-~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve 116 (187)
...++.|+||+++||+++.|+.+...|.|.+.+++..+++ +.|+..+++...+. .+..++.++++ +++++|+...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~i~~~~p-~~~~~~~~~~ 78 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGLV---RSTFTVTELRP-GHSFTWTGPA 78 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCCC---ceEEEEEEecC-CCEEEEEecC
Confidence 3567899999999999999999988999999999998544 67876666654333 67888999986 4678887654
Q ss_pred ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
. ...+..+..+.+.+++++.+++.+.+.. +........+...++..++..|++||+.+|.
T Consensus 79 ~---~~~~~~~~~~~~~~~~~t~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 79 P---GISAVHRHEFEAKPDGGVRVTTSESLSG--PLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred C---CEEEEEEEEEEEcCCCcEEEEEEEEeec--chHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 2 2344566666666545677777665421 1222334567888888999999999998873
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.43 E-value=9.5e-12 Score=93.76 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=99.4
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEe-cCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVV-SGLPASTSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~-~g~~~~~v~ErL~~~D~~~~~~sY~vve 116 (187)
..+++|+||+++||+++.||.+...|+|. ..++.. +.++...++.+... .|.. .-.+....+|+..+++.|..++
T Consensus 2 ~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~i~~~~~~ 78 (142)
T cd08861 2 EHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV--HTWTSRRVLDPEGRRIVFRQEE 78 (142)
T ss_pred eEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE--EEEEEEEEEcCCCCEEEEEEee
Confidence 35779999999999999999995569997 455443 32211234544444 2321 2224455678878999999998
Q ss_pred ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
++.++..+.+...+.+.+++++.++|...+. ...+.++....+.+.+...+...|.+||+.+|+
T Consensus 79 ~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 79 PPPPVASMSGEWRFEPLGGGGTRVTLRHDFT-LGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CCCChhhheeEEEEEECCCCcEEEEEEEEEE-ECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 6556789999999999865567888776642 333445677788888888889999999999884
No 9
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.35 E-value=1.3e-10 Score=86.71 Aligned_cols=134 Identities=13% Similarity=0.015 Sum_probs=89.1
Q ss_pred eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-C-CCCCCeEEEEEEecCCCcceeeEEEEEEeC-CCCeEEEE
Q 046697 37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-G-DGGVGSIREVTVVSGLPASTSTERLEILDD-EKHILSFR 113 (187)
Q Consensus 37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G-~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~-~~~~~sY~ 113 (187)
+.+.++.|+||+++||+++.|+.+...|.|.+.+++.. + +++.+...++++..++ ...+-+..++. ..++++|+
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~ 79 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYG---IKDTYALEYTWDGAGSVSWT 79 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeee---EEEEEEEEEEEcCCCcEEEE
Confidence 45677899999999999999999988999999999985 3 3333333345554432 11122222322 26789999
Q ss_pred EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046697 114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVV 178 (187)
Q Consensus 114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~ 178 (187)
..++.. ...+.+...+.+.+ +|+.++|..++ ++.-+........+.+.+....+++|++.
T Consensus 80 ~~~~~~-~~~~~~~~~~~~~~-~~t~vt~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 80 LVEGEG-NRSQEGSYTLTPKG-DGTRVTFDLTV---ELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred Eecccc-eeEEEEEEEEEECC-CCEEEEEEEEE---EecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 998863 67788888888876 46777776543 32223445555556666666667777654
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.33 E-value=2.4e-10 Score=84.92 Aligned_cols=139 Identities=13% Similarity=0.076 Sum_probs=90.5
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCC-CcceeeEEEEEEeCCCCeEEEEEEe
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGL-PASTSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~-~~~~v~ErL~~~D~~~~~~sY~vve 116 (187)
...+++|+||+++||+++.|+.+...|.+.+..++... .++|....+++..+. ....+.+++.++|+ ++++.|+...
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~~~ 79 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWRGGL 79 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEEecC
Confidence 35678999999999999999999878988876665531 346777777765421 22367888999987 5899999887
Q ss_pred ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
++........+..+.+.+++++.+++...+.... ...........+...++..++.||+.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 80 PFPGLLDGEHSFELEPLGDGGTRFVHRETFSGLL--APLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred CCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEEE--hHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 7653334556677777644667777765433221 1111223344445555555666665543
No 11
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.29 E-value=4.5e-10 Score=85.39 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=96.2
Q ss_pred eeEEEEEEEcCChHHHHHHhhcCCCCccccccceee---Ee--c-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCe
Q 046697 36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSC---NM--H-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHI 109 (187)
Q Consensus 36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~---~~--~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~ 109 (187)
.+...+++|++|+++||+++.|+.+...|.|.+..+ .. . +..++|+...++...+.+ ....++.++++ +++
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~v~~~~p-~~~ 78 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVG--EGEMEITESVP-NER 78 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCccc--ceEEEEEecCC-CcE
Confidence 456788899999999999999999976898865442 22 2 234578877676554211 34567788876 688
Q ss_pred EEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 110 LSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEG----NTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 110 ~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~----~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
+.|++..+++....+..++.+.+.+ +|+.++|...+ +.+.+ .........++..++.+|++||+.+|+
T Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~-~gT~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 79 IEYELRFIKPFEATNDVEFTLEPVG-GGTKVTWGMSG---ELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEEEEecCCccccceEEEEEEEcC-CceEEEEEEEe---cCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999986433123777888888884 67888876543 33322 222445667777788889999999885
No 12
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.23 E-value=3.5e-10 Score=85.21 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=96.4
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccc
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEH 119 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~ 119 (187)
.+++|+||++.||+++.|+.+...|.|.+.++++.+.++.+...+++++-++-...+..++. +++ ++++++..++|
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~g-- 78 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGGIRESFTSRVT-LVP-PESIEAELVDG-- 78 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEecCC--
Confidence 46799999999999999999977999999999998332234444555553321123445544 666 67899999988
Q ss_pred cCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 120 RLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 120 p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
++..+.+...+.|.+++++.+++... +++..+.....+..+++...+..|+++++.+++
T Consensus 79 ~~~~~~g~w~~~p~~~~~T~v~~~~~---~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 79 PFKHLEGEWRFKPLGENACKVEFDLE---FEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred ChhhceeEEEEEECCCCCEEEEEEEE---EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36789999999998756677776544 344444444566677777777788888877654
No 13
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.22 E-value=7.1e-10 Score=82.54 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=90.2
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG 117 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg 117 (187)
..+++|+||+++||+++.|+.+...|.+.+..+... ..| |+.+.+....++..-.+..++.++|+ ++++.|+...+
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~-~~~i~~~~~~~ 79 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEP-PRRLVFTWAFS 79 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcC-CCeEEEEeccc
Confidence 467899999999999999999966776653333333 223 67665544332212257889999986 48899999877
Q ss_pred cc-cCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 118 EH-RLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 118 ~~-p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
+. +.......+.+.+.+ +++.+++....... ... .......+...+...|+.||+.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 80 DETPGPETTVTVTLEETG-GGTRLTLTHSGFPE---EDA-EQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred CCCCCCceEEEEEEEECC-CCEEEEEEEEccCh---HhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 54 345566777777775 66777776543221 111 3344555566777889999999884
No 14
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=1.1e-09 Score=81.56 Aligned_cols=132 Identities=15% Similarity=0.185 Sum_probs=90.2
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecc
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE 118 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~ 118 (187)
..+++|+||+++||+++.|+.+.+.|.|.+.++++.+.+ +....+.+..|.. .....++..+++ ++.+.|....|.
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~~~~~~ 78 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT--RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWRSVEGA 78 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC--ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEEECCCC
Confidence 456799999999999999999988999999999887321 2222233332332 245566666655 567999987764
Q ss_pred ccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 119 HRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNT----VEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 119 ~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~----~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
+ .+.++..+.+.+++++.+++...+ +++.+.. ......+++..++..|++||+.+|
T Consensus 79 ~---~~~~~~~f~~~~~~~T~vt~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 79 D---PNAGSVRFRPAPGRGTRVTLTIEY---EPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred C---CcceEEEEEECCCCCeEEEEEEEE---ECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 3 566777777765446777766543 3333222 234566677778889999999887
No 15
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.15 E-value=5.2e-09 Score=80.77 Aligned_cols=138 Identities=14% Similarity=0.049 Sum_probs=95.1
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec--CCCCCCeEEEEEEe--cCC-CcceeeEEEEEEeCCCCeEEEE
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH--GDGGVGSIREVTVV--SGL-PASTSTERLEILDDEKHILSFR 113 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~--G~g~vG~vR~lt~~--~g~-~~~~v~ErL~~~D~~~~~~sY~ 113 (187)
..+++|++|++.||+++.|+.+-..|.|.+..+++. |.++.| .++++. .++ ..++..++ .+|+..+++.+.
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~--~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i~~~ 79 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR--FRLTMHPDANGTVWSWVSER--TLDPVNRTVRAR 79 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE--EEEEEEeccCCEEEEEEEEE--EecCCCcEEEEE
Confidence 457899999999999999999966899999999997 333334 334332 232 11222222 267777777774
Q ss_pred EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046697 114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASL 183 (187)
Q Consensus 114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~ 183 (187)
-. ...|+....+.-.+.+.+ +|+.+++..++. +....++......+.++..+...|++||+.+|+.|
T Consensus 80 ~~-~~~p~~~m~~~W~f~~~~-~gT~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~ 146 (146)
T cd08860 80 RV-ETGPFAYMNIRWEYTEVP-EGTRMRWVQDFE-MKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA 146 (146)
T ss_pred Ee-cCCCcceeeeeEEEEECC-CCEEEEEEEEEE-ECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence 12 223577888888888885 568888776643 22123555667788888899999999999999854
No 16
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=1e-08 Score=73.82 Aligned_cols=132 Identities=20% Similarity=0.184 Sum_probs=89.1
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEec-C-CCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-G-DGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG 117 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G-~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg 117 (187)
.++.|++|+++||+++.|+.+...|.|.+.+++.. + .+..|....+.+..+. ......++..+++ +..++|.+..+
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~~~~ 80 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRVTGG 80 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEEecC
Confidence 56799999999999999999977899999999887 3 2445666655554111 1257888888887 68999999987
Q ss_pred cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCC---CHHHHHHHHHHHHHHHHHHHHH
Q 046697 118 EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGN---TVEDTKMFVDTVVKLNLQKLGV 177 (187)
Q Consensus 118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~---~~~~~~~~~~~~~~~gL~~Lk~ 177 (187)
+.+ ..+.....+.+.+++++.+++...+ ..+... ....+..+++..+...++++++
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~t~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 81 GGG-VDGTGEWRLEPEGDGGTRVTYTVEY---DPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred CCC-cceeEEEEEEECCCCcEEEEEEEEE---ecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 763 5677788887775336767765443 333322 2334444455454555555544
No 17
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.04 E-value=9.3e-09 Score=77.50 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=83.2
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEe-cC--CCCCCeEEEEEEec-CCCcceeeEEEEEEeCCCCeEEEE
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNM-HG--DGGVGSIREVTVVS-GLPASTSTERLEILDDEKHILSFR 113 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~-~G--~g~vG~vR~lt~~~-g~~~~~v~ErL~~~D~~~~~~sY~ 113 (187)
.++++.|+||+++||+++.|+.+...|.|....... .+ +-.+|...++.+.. |.+ ..+..++.++++ +++++|+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~l~~~ 79 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEE-NRLIAWR 79 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECC-CCEEEEE
Confidence 457889999999999999999997778764222222 22 23478877776654 333 256677888887 5789998
Q ss_pred EEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHh
Q 046697 114 VVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVED--TKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 114 vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~--~~~~~~~~~~~gL~~Lk~~le 180 (187)
..-...+......++.+.+.+++++.+++...+ .... ..... .......-++..|+.|++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~---~g~~-~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 80 PGPAGQEPGGHRWRWELEPIGPGRTRVTETYDW---SAVT-DLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred ccCCCCCCCceeEEEEEEECCCCcEEEEEEEec---cCCh-hhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 652222234444556666665455777765442 2111 11111 112234455678888888775
No 18
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.95 E-value=3e-08 Score=74.09 Aligned_cols=137 Identities=14% Similarity=0.047 Sum_probs=86.5
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCC--cceeeEEEEEEeCCCCeEEEEEEe
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLP--ASTSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~--~~~v~ErL~~~D~~~~~~sY~vve 116 (187)
..+..|++|+++||+++.|+.+...|.|.+.+++..+++.... .+++..|.. .-...-++.++|+ ++++.+....
T Consensus 4 ~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (144)
T cd05018 4 SGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEA--TVKLKVGPVKGTFKGKVELSDLDP-PESYTITGEG 80 (144)
T ss_pred eeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEE--EEEEEEccEEEEEEEEEEEEecCC-CcEEEEEEEE
Confidence 4567999999999999999999778999999888764332111 122222210 0112455555554 3677777654
Q ss_pred c-cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697 117 G-EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179 (187)
Q Consensus 117 g-~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l 179 (187)
. ......+..+..+.+. ++|+.++|..++.....-..+.......+++.++...+++||+++
T Consensus 81 ~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 81 KGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred cCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 2224578888888887 467888877654321111123455666677777777788888765
No 19
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.93 E-value=8.5e-08 Score=73.11 Aligned_cols=132 Identities=16% Similarity=0.119 Sum_probs=81.8
Q ss_pred EEEEcCChHHHHHHhhcCCCCccccccceeeEecC--C-CCCCeEEEEEEecCCCc-ceeeEEEEEEeCCCCeEEEEEEe
Q 046697 41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG--D-GGVGSIREVTVVSGLPA-STSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G--~-g~vG~vR~lt~~~g~~~-~~v~ErL~~~D~~~~~~sY~vve 116 (187)
+-.|+||+++||+++.|+.....|.|.+.+++..+ . .++|+.-++++....+. ..+.-++.++++ .+.++|.. +
T Consensus 6 ~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~-~ 83 (146)
T cd07824 6 VWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEVRA-S 83 (146)
T ss_pred EEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEEEE-E
Confidence 45899999999999999999778999999998863 2 34666544443221111 134556666655 67899985 5
Q ss_pred ccccCCCeeeEEEEEEecCCCceEEEEEEEEeec----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046697 117 GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVD----IPEGNTVEDTKMFVDTVVKLNLQKLGVV 178 (187)
Q Consensus 117 g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d----~p~~~~~~~~~~~~~~~~~~gL~~Lk~~ 178 (187)
|++ . ......+.+.+ +|+.+++..+..... .-.++.........+.+++..+++||+.
T Consensus 84 g~~--~-~~~~~~~~~~~-~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 84 GDL--E-GVGRWTLAPDG-SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred Eee--e-EEEEEEEEEcC-CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 654 2 35666766654 567777654432111 1123334445555555666666666664
No 20
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.82 E-value=1.5e-07 Score=71.78 Aligned_cols=138 Identities=15% Similarity=0.099 Sum_probs=85.3
Q ss_pred EEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCccee--eEEEEEEeCCCCeEEEEEEecc
Q 046697 41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTS--TERLEILDDEKHILSFRVVGGE 118 (187)
Q Consensus 41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v--~ErL~~~D~~~~~~sY~vveg~ 118 (187)
+.+|+||+++||+++.|+.+...|.|.+++.+..|++. ..-+++++-|.-...+ +=++..++...+++++..-..+
T Consensus 4 ~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 81 (146)
T cd07823 4 EFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATGKD 81 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEEec
Confidence 56899999999999999999778999998888765331 2223444333210011 2256666646788887755321
Q ss_pred ccC-C--CeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 119 HRL-N--NYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 119 ~p~-~--~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
... . ....++.+.+ .++|+.++|..+....-+-..+.....+...+.++...+++|++++|.
T Consensus 82 ~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e~ 146 (146)
T cd07823 82 ARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLAA 146 (146)
T ss_pred CCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111 1 2334455555 335677887765322222233445567777888888889999998873
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.67 E-value=6.1e-07 Score=66.42 Aligned_cols=127 Identities=18% Similarity=0.290 Sum_probs=81.9
Q ss_pred EcCChHHHHHHhhcCCCCccccccceeeEecC-CCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccCC
Q 046697 44 IDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG-DGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLN 122 (187)
Q Consensus 44 I~apae~VW~vi~df~~~~~w~p~v~s~~~~G-~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~~ 122 (187)
|+||+++||+++.|+.+...|.|.+.++++.. ++. +..-.++...++.......++....+ .. +.+..++|+ ++
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~g~--~~ 75 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPP-ER-IRFEQISGP--FK 75 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECT-TT-EEEESSETT--EE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEe-ee-eeeeecCCC--ch
Confidence 78999999999999999778999999999983 332 32223444443322244566554433 33 788887775 58
Q ss_pred CeeeEEEEEEecC--CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046697 123 NYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176 (187)
Q Consensus 123 ~y~a~~~v~~~~~--~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk 176 (187)
.+.+.-++.+.++ +|+...+.+. +..+++.+.....+..+++......+++|+
T Consensus 76 ~~~g~W~~~~~~~~~~g~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 76 SFEGSWRFEPLGGNEGGTRTRVTYD-YEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEETTECCEEEEEEEEE-EEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEEECCCCcCCCEEEEEEE-EEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 8999999998863 1443344343 344555666566666666666666666553
No 22
>PRK10724 hypothetical protein; Provisional
Probab=98.59 E-value=2.2e-06 Score=67.11 Aligned_cols=107 Identities=10% Similarity=0.022 Sum_probs=76.2
Q ss_pred ceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697 35 TCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV 114 (187)
Q Consensus 35 ~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v 114 (187)
+.....++.|++|++++|+++.|..+-..|.|.+.++++...++.+.+..++++-++-......|.. +++ ++++.+.+
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~~~~f~srv~-~~~-~~~I~~~~ 91 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGISKTFTTRNQ-LTS-NQSILMQL 91 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCccEEEEEEEE-ecC-CCEEEEEe
Confidence 4455677899999999999999999966899999999887221123444555544432234445544 454 45899999
Q ss_pred EeccccCCCeeeEEEEEEecCCCceEEEEEE
Q 046697 115 VGGEHRLNNYRSVTSVNEFQKGGEIYTIVTE 145 (187)
Q Consensus 115 veg~~p~~~y~a~~~v~~~~~~g~~~t~~~~ 145 (187)
++|+ ++.+.+.-.+.|.+++++.+++...
T Consensus 92 ~~Gp--F~~l~g~W~f~p~~~~~t~V~~~l~ 120 (158)
T PRK10724 92 VDGP--FKKLIGGWKFTPLSQEACRIEFHLD 120 (158)
T ss_pred cCCC--hhhccceEEEEECCCCCEEEEEEEE
Confidence 9983 7889999999898655677776554
No 23
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.53 E-value=8.2e-06 Score=61.44 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=73.0
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEecC-C---CCCCeEEEEEEecCC-CcceeeEEEEEEeCCCCeEEEEE
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG-D---GGVGSIREVTVVSGL-PASTSTERLEILDDEKHILSFRV 114 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G-~---g~vG~vR~lt~~~g~-~~~~v~ErL~~~D~~~~~~sY~v 114 (187)
.++.|+||+++||+.+.|+.+...|.|.+.++++.+ . -.+|+.-++++..++ .. ..+-+++.+++ ++.+++..
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~w~~~it~~~p-~~~f~~~~ 80 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-RWTTEITEVEP-PRRFVDEQ 80 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCce-EEEEEEEEEcC-CCeEEEEe
Confidence 567999999999999999999888999998998863 2 234677667666533 22 34566677775 57899998
Q ss_pred EeccccCCCeeeEEEEEEecCCCceEEEEEE
Q 046697 115 VGGEHRLNNYRSVTSVNEFQKGGEIYTIVTE 145 (187)
Q Consensus 115 veg~~p~~~y~a~~~v~~~~~~g~~~t~~~~ 145 (187)
+.|+ +.....+..+.+.+ +|+.+|....
T Consensus 81 ~~G~--~~~w~h~~~f~~~~-~gT~vt~~v~ 108 (137)
T cd07820 81 VSGP--FRSWRHTHRFEAIG-GGTLMTDRVE 108 (137)
T ss_pred ccCC--chhCEEEEEEEECC-CceEEEEEEE
Confidence 8875 45566666666665 4677776544
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.50 E-value=5.8e-06 Score=61.98 Aligned_cols=135 Identities=17% Similarity=0.122 Sum_probs=76.5
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve 116 (187)
...++.|+||+++||+++.|+.....|.+... +... |.+..| .+++.++. .....=++.++++ +++++|+...
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~~-~~~~~~~i~~~~p-~~~l~~~~~~ 76 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGYE-HGVFPVTVVEVDP-PRRFSFRWHP 76 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCCC-ccceEEEEEEeCC-CcEEEEEecC
Confidence 34678999999999999999999667766532 2232 332223 34443321 0145567888876 5889998754
Q ss_pred cc----cc---CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 117 GE----HR---LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 117 g~----~p---~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
.. .+ ......++.+.+.+ +|+.+++... .+....+...+.....+..-....|+.|+++||.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~--~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 77 PAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTES--GFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred CCcccccccCCCCceEEEEEEEecC-CcEEEEEEEc--CCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 33 11 12233455555553 5677776532 1111111111123334555566788899988873
No 25
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.47 E-value=6e-06 Score=63.95 Aligned_cols=128 Identities=15% Similarity=0.068 Sum_probs=80.2
Q ss_pred eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEE
Q 046697 36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVV 115 (187)
Q Consensus 36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vv 115 (187)
....++.+|+||+++||+++.|+.+...|.+.. .. +-.+|...++++.... .....-++.++|+ +++++|+..
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~--~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p-~~~l~~~~~ 83 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TG--DLRVGGRVEFVMDDEE-GPNATGTILACEP-PRLLAFTWG 83 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CC--CcccCceEEEEecCCC-CCccceEEEEEcC-CcEEEEEec
Confidence 456788999999999999999999976787622 11 2124444455554411 1256788888886 488898876
Q ss_pred eccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697 116 GGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS 182 (187)
Q Consensus 116 eg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~ 182 (187)
.++ .....++.+.+.+ +|+.+++..... +.. .....+..-....|+.||+.+|+.
T Consensus 84 ~~~---~~~~~~~~l~~~~-~gT~v~~~~~~~----~~~----~~~~~~~~GW~~~L~~Lk~~~e~~ 138 (157)
T cd08899 84 EGG---GESEVRFELAPEG-DGTRLTLTHRLL----DER----FGAGAVGAGWHLCLDVLEAALEGG 138 (157)
T ss_pred CCC---CCceEEEEEEEcC-CCEEEEEEEecc----Cch----hhhhhhcccHHHHHHHHHHHHcCC
Confidence 544 2233444454443 567666554421 111 123344455667799999998864
No 26
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.40 E-value=2.2e-05 Score=59.33 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=74.5
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccc-c---ceeeEec-CCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCeE
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKH-F---IKSCNMH-GDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHIL 110 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p-~---v~s~~~~-G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~~ 110 (187)
..++..|+||+++||+++.+-..++.|.+ . ...+++. ..| |..| +.+. +|.. -...=++.++++ ++++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~G--G~~~-~~~~~~~g~~-~~~~g~v~e~~p-~~~l 76 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPG--GRWR-FVMHGPDGTD-YPNRIVFLEIEP-PERI 76 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCC--CEEE-EEEECCCCCE-ecceEEEEEEcC-CCEE
Confidence 35788999999999999999888666643 2 2223333 223 4433 3332 2321 122347888886 5899
Q ss_pred EEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 111 SFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 111 sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
.|+...++. ....++.+.+.+ +|+.+++... +. +.+.....+...+.+-....|+.|++.+++
T Consensus 77 ~~t~~~~~~---~~~v~~~~~~~~-~gT~ltl~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 77 VYDHGSGPP---RFRLTVTFEEQG-GKTRLTWRQV---FP-TAAERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred EEEeccCCC---cEEEEEEEEECC-CCEEEEEEEE---cC-CHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 998754421 233444555543 6677776542 11 111111122334455566778889888874
No 27
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.37 E-value=2.2e-05 Score=58.07 Aligned_cols=130 Identities=15% Similarity=0.033 Sum_probs=73.3
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecc
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE 118 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~ 118 (187)
..++.|+||+++||+++.|......|.+... ..++-.+|..=.+...+. ....+.=++.++++ +++++|+...+.
T Consensus 3 ~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~---~~~~~~~G~~~~~~~~~~-~~~~~~~~v~~~~~-~~~l~~~~~~~~ 77 (136)
T cd08893 3 VYVTYIRATPEKVWQALTDPEFTRQYWGGTT---VESDWKVGSAFEYRRGDD-GTVDVEGEVLESDP-PRRLVHTWRAVW 77 (136)
T ss_pred EEEEEecCCHHHHHHHHcCchhhhheecccc---cccCCcCCCeEEEEeCCC-cccccceEEEEecC-CCeEEEEEecCC
Confidence 4678999999999999999999666654421 122212333223444331 11135566777765 677887766433
Q ss_pred cc----CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 119 HR----LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 119 ~p----~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
.+ .....-++.+.+.+ +++.+++...- .+.+ ......+..-+...|+.||+.+|.
T Consensus 78 ~~~~~~~~~~~v~~~l~~~~-~~t~l~~~~~~----~~~~---~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 78 DPEMAAEPPSRVTFEIEPVG-DVVKLTVTHDG----FPPG---SPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred CcccCCCCCEEEEEEEEecC-CcEEEEEEecC----CCCc---hhHHHhhhcCHHHHHHHHHHHhcC
Confidence 21 22344555555543 45555544321 1221 123334455566789999998874
No 28
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.31 E-value=3.4e-05 Score=58.70 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=71.9
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccc-c---ceeeEec-CCCCCCeEEEEEEe-cCCCcceeeEEEEEEeCCCCeEEE
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKH-F---IKSCNMH-GDGGVGSIREVTVV-SGLPASTSTERLEILDDEKHILSF 112 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p-~---v~s~~~~-G~g~vG~vR~lt~~-~g~~~~~v~ErL~~~D~~~~~~sY 112 (187)
.++..|+||+++||+++.+-..+..|.+ . +..+++. ..| |..+ +.+. .++..-.+.=++.++|+ .+++.|
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~G--G~~~-~~~~~~~g~~~~~~g~v~~i~p-~~~l~~ 78 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPG--GAFR-TVMRGPDGEEFPNPGCFLEVVP-GERLVF 78 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecC--cEEE-EEEECCCCCEecceEEEEEEeC-CCEEEE
Confidence 4778999999999999999888656643 2 3334443 333 4444 3342 22211123567888887 588887
Q ss_pred EEE--eccccCCC-e-eeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 113 RVV--GGEHRLNN-Y-RSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 113 ~vv--eg~~p~~~-y-~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
+-. ++..+... + ..++.+.+. ++|+.+++.... . .....+.....-+..=....|+.|+++++.
T Consensus 79 t~~~~~~~~~~~~~~~~v~~~~~~~-~~gT~Ltl~~~~---~-~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~ 146 (146)
T cd08896 79 TDALTPGWRPAEKPFMTAIITFEDE-GGGTRYTARARH---W-TEADRKQHEEMGFHDGWGTAADQLAALAES 146 (146)
T ss_pred EEeecCCcCCCCCCcEEEEEEEEec-CCcEEEEEEEEe---C-CHHHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 732 32222222 1 234444454 366777764321 1 111001111111234466788889888763
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.17 E-value=0.00018 Score=54.39 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=72.9
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCcccccc-----ceeeEec-CCCCCCeEEEEEEe-cCCCcceeeEEEEEEeCCCCeEE
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHF-----IKSCNMH-GDGGVGSIREVTVV-SGLPASTSTERLEILDDEKHILS 111 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~-----v~s~~~~-G~g~vG~vR~lt~~-~g~~~~~v~ErL~~~D~~~~~~s 111 (187)
.++..++||+++||+++.|-..++.|.+. +..+.+. -.| |..+ +.+. .++......=++.++|+ ++++.
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~G--g~~~-~~~~~~~g~~~~~~g~~~~~~p-~~~l~ 78 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVG--GREV-SRGGPKGGPEITVEARYHDIVP-DERIV 78 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCC--CEEE-EEEECCCCCEEeeeEEEEEecC-CceEE
Confidence 56789999999999999998886666532 2333333 222 4444 3343 22221234557778876 58887
Q ss_pred EEEEe--ccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 112 FRVVG--GEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 112 Y~vve--g~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
|+-.. ++.+.....-++.+.+.+ +|+.+++....... ... +. ...+..=....|+.|++.|++
T Consensus 79 ~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~--~~~---~~-~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 79 YTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFL--DGD---DD-PAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEecc--ccc---ch-hhhHHHHHHHHHHHHHHHHhC
Confidence 77542 222222223344444443 56777765442111 111 11 223334456678999988874
No 30
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.17 E-value=3.8e-05 Score=58.50 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=71.2
Q ss_pred EEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCc--ceeeEEEEEEeCCCCeEEEEEEeccc
Q 046697 42 QRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPA--STSTERLEILDDEKHILSFRVVGGEH 119 (187)
Q Consensus 42 ~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~--~~v~ErL~~~D~~~~~~sY~vveg~~ 119 (187)
.+|++|+++||+++.|...+..+.|.+++.+..|+.-.+ +++.+-|.-. -..+=++..+|+.++. +..+-..+.
T Consensus 3 ~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~~~~~~---~~~v~vG~i~~~~~g~~~~~~~~~~~~~-~~~~~g~g~ 78 (140)
T PF06240_consen 3 FEVPAPPEKVWAFLSDPENLARCIPGVESIEKVGDEYKG---KVKVKVGPIKGTFDGEVRITEIDPPESY-TLEFEGRGR 78 (140)
T ss_dssp EEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEECTEEEE---EEEEESCCCEEEEEEEEEEEEEETTTEE-EEEEEEEEC
T ss_pred EEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecCcEEEE---EEEEEeccEEEEEEEEEEEEEcCCCcce-EeeeeccCC
Confidence 589999999999999999988899999999887621011 1233333210 1234456667765444 344443332
Q ss_pred cCCCee--eEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697 120 RLNNYR--SVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179 (187)
Q Consensus 120 p~~~y~--a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l 179 (187)
..... ..+.+...+++++.++|..+.-..-....+.........+.+++..+++|++.+
T Consensus 79 -~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 79 -GGGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp -TCCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333 333333333333666666553222112223344555556666666666666544
No 31
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.15 E-value=0.00022 Score=54.19 Aligned_cols=135 Identities=10% Similarity=-0.026 Sum_probs=72.6
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccccc----eeeEecCCCCCCeEEEEEEe-cCCCcceeeEEEEEEeCCCCeEEE
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFI----KSCNMHGDGGVGSIREVTVV-SGLPASTSTERLEILDDEKHILSF 112 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v----~s~~~~G~g~vG~vR~lt~~-~g~~~~~v~ErL~~~D~~~~~~sY 112 (187)
..++..++||+++||+++.+-..++.|.+.- ..+++. -.+|..-++.+. .++....+.=++.++++ ++++.|
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d--~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p-~~~l~~ 78 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECD--IRVGGSYRYVHRAPDGEEMGFHGVYHEVTP-PERIVQ 78 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEe--ccCCCEEEEEEECCCCCEecceEEEEEEcC-CCEEEE
Confidence 3578899999999999999988866665422 223332 113333334443 22221134556777876 577777
Q ss_pred EEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 113 RVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 113 ~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
+-.-.+.+...-..++.+.+.+ +|+.+++... +. .....++.....+..=...+|+.|++.|+
T Consensus 79 t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~---~~-~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLPDGVALETVTFTELG-GRTRLTATSR---YP-SKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCCCCceEEEEEEEECC-CCEEEEEEEE---eC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7542222222223344444543 6677776422 11 11111112333444555677888887765
No 32
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.08 E-value=0.00021 Score=53.45 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=72.2
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCcccccc-----ceeeEec-CCCCCCeEEEEEEe--cCCCcceeeEEEEEEeCCCCe
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHF-----IKSCNMH-GDGGVGSIREVTVV--SGLPASTSTERLEILDDEKHI 109 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~-----v~s~~~~-G~g~vG~vR~lt~~--~g~~~~~v~ErL~~~D~~~~~ 109 (187)
..++..|+||+++||+++.|-..++.|... +..++.. ..| |..+ +.+. +|.....+.=++.++++ +++
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~~~g~~~~~~~g~~~ei~p-~~~ 77 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVG--GKFS-YRMEAKDGSMGFDFEGTYTEVEP-HKL 77 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcC--CEEE-EEEEcCCCCcccccceEEEEECC-CCE
Confidence 357789999999999999999887778432 2223333 223 4443 3332 23211134556777876 599
Q ss_pred EEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 110 LSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 110 ~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
+.|+..++ ...++.+.+.+ +|+.++... +..+.. ....+..=...+|+.|++.+|.
T Consensus 78 l~~~~~~~------~~v~~~l~~~~-~gT~l~l~~-----~~~~~~----~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 78 IEYTMEDG------REVEVEFTEEG-DGTKVVETF-----DAENEN----PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEEEcCCC------CEEEEEEEECC-CCEEEEEEE-----CCCCCC----cHHHHHHHHHHHHHHHHHHhhC
Confidence 99996432 23455555543 567776542 221111 1222334457789999998874
No 33
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.08 E-value=5.6e-05 Score=58.42 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=61.7
Q ss_pred EEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCccee--eEEEEEEeCCCCeEEEEEEecc
Q 046697 41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTS--TERLEILDDEKHILSFRVVGGE 118 (187)
Q Consensus 41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v--~ErL~~~D~~~~~~sY~vveg~ 118 (187)
+-.|++|+++||+++.|+.....+.|.|++++..|+.-.+. ++++-|.--..+ +=++..+|+..++++-..-.|.
T Consensus 6 ~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~e~~~~---v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g~G~~ 82 (146)
T COG3427 6 TFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGDEYTAK---VKLKIGPLKGTFSGRVRFVNVDEPPRSITINGSGGG 82 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhhcCCcceeeecCCeEEEE---EEEeecceeEEEEEEEEEccccCCCcEEEEEeeccc
Confidence 45899999999999999999889999999999987622222 223323110123 4455666677777776666533
Q ss_pred c-cCCCeeeEEEEEEecCCCceEEEEE
Q 046697 119 H-RLNNYRSVTSVNEFQKGGEIYTIVT 144 (187)
Q Consensus 119 ~-p~~~y~a~~~v~~~~~~g~~~t~~~ 144 (187)
. ...+...-+.+.+.+ +++.++|..
T Consensus 83 ~~g~~~~~~~v~l~~~g-~gt~v~w~~ 108 (146)
T COG3427 83 AAGFADGTVDVQLEPSG-EGTRVNWFA 108 (146)
T ss_pred ccceeeeeeEEEEEEcC-CCcEEEEEE
Confidence 3 122333334444443 346666543
No 34
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.97 E-value=0.0004 Score=55.38 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=91.1
Q ss_pred hhhccCCCCCCceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEec--CCCcceeeEEEE
Q 046697 24 ERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVS--GLPASTSTERLE 101 (187)
Q Consensus 24 ~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~--g~~~~~v~ErL~ 101 (187)
..+..-+.-.+-...+++++|++|++.||++.+|+.++..|+..+.|+++.-+.. -+|+... |..+++ .-+|+
T Consensus 58 ~~a~~~~g~~~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr----SrW~~~ap~g~~v~W-ea~it 132 (217)
T COG5637 58 ATALKIEGMAKPIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR----SRWKANAPLGLEVEW-EAEIT 132 (217)
T ss_pred HHHHHhhcccCceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc----cceeEcCCCCceEEE-eehhh
Confidence 3344444444445566788999999999999999999889999999999974431 3455543 333223 34444
Q ss_pred EEeCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHH----HHHHHHHHHHHHH
Q 046697 102 ILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFV----DTVVKLNLQKLGV 177 (187)
Q Consensus 102 ~~D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~----~~~~~~gL~~Lk~ 177 (187)
=|..+.++.|+=++|.- + .-++.++.-+.+++.+.+.... ...+|.+.......+++ +.-+..-|+..|.
T Consensus 133 -~d~~~e~I~W~Sl~Ga~-v-~NsG~VrF~~~pg~~t~V~v~l---sY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~ 206 (217)
T COG5637 133 -KDIPGERIQWESLPGAR-V-ENSGAVRFYDAPGDSTEVKVTL---SYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKE 206 (217)
T ss_pred -ccCCCcEEeeecCCCCc-C-CCCccEEeeeCCCCceEEEEEE---EecCCccHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 45678999999999853 2 2456666666654433443332 22455554443333332 2334456677777
Q ss_pred HHhh
Q 046697 178 VSMA 181 (187)
Q Consensus 178 ~le~ 181 (187)
..|.
T Consensus 207 ~~e~ 210 (217)
T COG5637 207 YQEN 210 (217)
T ss_pred HHHc
Confidence 7665
No 35
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.97 E-value=0.00073 Score=50.29 Aligned_cols=122 Identities=10% Similarity=0.099 Sum_probs=70.8
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecc
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE 118 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~ 118 (187)
.++..|+||+++||+++.+-..++.|.....+.+.. .| |..+ +.+| .+.=++.++++ +++++|+-.-.+
T Consensus 3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~-~G--G~~~---~~~g----~~~g~~~~i~p-~~~l~~~w~~~~ 71 (126)
T cd08892 3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAK-VG--GKFS---LFGG----NITGEFVELVP-GKKIVQKWRFKS 71 (126)
T ss_pred EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCC-CC--CEEE---EeCC----ceEEEEEEEcC-CCEEEEEEEcCC
Confidence 467899999999999999988877786543333333 22 4443 3344 24456777876 577777654322
Q ss_pred ccCCC-eeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 119 HRLNN-YRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 119 ~p~~~-y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
.+... -..++.+.+. ++|+.+++.... .+.+ .....-.+.-...|+.|++.|+
T Consensus 72 ~~~~~~s~v~~~l~~~-~~gT~ltl~~~g----~~~~----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 72 WPEGHYSTVTLTFTEK-DDETELKLTQTG----VPAG----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCCCCcEEEEEEEEEC-CCCEEEEEEEEC----CCCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence 22211 2233333443 356777765432 2222 2223344544557889998876
No 36
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.94 E-value=0.0007 Score=51.60 Aligned_cols=135 Identities=10% Similarity=0.012 Sum_probs=69.2
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCcccccc-------ceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeE
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHF-------IKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHIL 110 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~-------v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~ 110 (187)
..++.|+||+++||+++.+ ..-+.|.|. ...|++. -.| |..+ +...+|.. ...=++.++++ .+++
T Consensus 3 ~~~~~i~Ap~e~Vw~a~t~-~l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~~g~~--~~~g~v~~v~p-~~~l 75 (149)
T cd08891 3 RKSVTVPAPPERAFEVFTE-GFGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGEDGTE--CEWGTVLAWEP-PSRL 75 (149)
T ss_pred EEEEEecCCHHHHHHHHHh-chhhccCCCcccccCCCccEEEcccCC--cEEE-EecCCCcE--eceEEEEEEcC-CCEE
Confidence 4678999999999999999 323344443 2445554 223 4443 22223331 23457788876 5888
Q ss_pred EEEEE-ec-cccCCCeeeE--EEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 111 SFRVV-GG-EHRLNNYRSV--TSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 111 sY~vv-eg-~~p~~~y~a~--~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
+|+-. .. ..+...+.+. +.+.+.+++|+.+++........ +++..+.........=....|+.|++.+|+
T Consensus 76 ~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~-~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 76 VFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERH-GDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred EEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEeccccc-CcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 88754 21 1112223333 33333321567777654422111 110011222222333345678889988875
No 37
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.91 E-value=0.0019 Score=48.99 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=69.8
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccc-c-c--eeeEec-CCCCCCeEEE-EEEec------CCCcceeeEEEEEEeC
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKH-F-I--KSCNMH-GDGGVGSIRE-VTVVS------GLPASTSTERLEILDD 105 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p-~-v--~s~~~~-G~g~vG~vR~-lt~~~------g~~~~~v~ErL~~~D~ 105 (187)
..++..|+||+++||+++.|...+..|.+ . + ..+.+. ..| |..+. +++.+ .+....+.=++.++++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~G--G~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p 79 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREG--GGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVP 79 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccC--CeEEEEEEcCCccccccCCcEeeeEEEEEEEcC
Confidence 45788999999999999999988656543 2 1 112232 223 33332 22222 1111134456888877
Q ss_pred CCCeEEEEEE--eccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 106 EKHILSFRVV--GGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 106 ~~~~~sY~vv--eg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
+++++|+.. ++..+ ....-++.+.+.+ +++.+++.... .+... .......=....|+.|++++|
T Consensus 80 -~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~~T~lt~~~~~----~~~~~----~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 80 -NERIVYTDVFDDPSLS-GEMTMTWTLSPVS-GGTDVTIVQSG----IPDGI----PPEDCELGWQESLANLAALVE 145 (146)
T ss_pred -CCEEEEEEEecCCCCC-ceEEEEEEEEecC-CCEEEEEEEeC----CCchh----hhhHHHHHHHHHHHHHHHHhc
Confidence 578888753 22222 2233444444443 55777765431 12221 122333344566888888776
No 38
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.90 E-value=0.002 Score=51.14 Aligned_cols=140 Identities=9% Similarity=0.004 Sum_probs=78.8
Q ss_pred eEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEecCCCc---ceeeEEEEEEeCCCCeEEE
Q 046697 37 VSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVSGLPA---STSTERLEILDDEKHILSF 112 (187)
Q Consensus 37 ~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~g~~~---~~v~ErL~~~D~~~~~~sY 112 (187)
..-.+..|++|+++||+++.|.+.-+.|-|.+.++++... +..-.+-.+.+....+. ..+..+-...+..+..+..
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i 121 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTI 121 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEE
Confidence 4445678999999999999999997799999999988722 21122223333322211 1122211222222344444
Q ss_pred EEEeccc--c-------CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697 113 RVVGGEH--R-------LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179 (187)
Q Consensus 113 ~vveg~~--p-------~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l 179 (187)
.+.+.+. | +..+.+...+.+.+++++.+++.. ..++...........+........+++|++++
T Consensus 122 ~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~---~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 122 TLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQA---YADPGGSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEE---EeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4443322 3 344555566667654446666544 34554455555555566666666677777653
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.81 E-value=0.00057 Score=49.64 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=66.2
Q ss_pred cCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecccc-CC
Q 046697 45 DAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHR-LN 122 (187)
Q Consensus 45 ~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p-~~ 122 (187)
|||+++||+++.+...++.|. .....++. ..| |..+... .+|. .-...=++.++++ ++++.|+.--++.+ ..
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~-~~~~~~~~~~~G--g~~~~~~-~~g~-~~~~~~~v~~~~p-~~~i~~~~~~~~~~~~~ 74 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWF-TTSEAEMDFRPG--GSFRFMD-PDGG-EFGFDGTVLEVEP-PERIVFTWRMPDDPDGP 74 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHS-EEEEEEEECSTT--EEEEEEE-TTSE-EEEEEEEEEEEET-TTEEEEEEEEETSSSCE
T ss_pred CcCHHHHHHHHCCHhHHhhcc-CCCcceeeeecC--CEEEEEe-cCCC-CceeeEEEEEEeC-CEEEEEEEEccCCCCCC
Confidence 699999999999999988891 12222232 223 4444312 3332 1123334888876 57898886544332 11
Q ss_pred CeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 123 NYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 123 ~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
...-++.+.+ .++++.++.... ... . .......+..-....|+.|++.||
T Consensus 75 ~~~v~~~~~~-~~~~T~l~~~~~--~~~--~---~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 75 ESRVTFEFEE-EGGGTRLTLTHS--GFP--D---DDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEE-ETTEEEEEEEEE--EEH--S---HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEE-cCCcEEEEEEEE--cCC--c---cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2233334444 335566665542 111 1 111222145556677889998876
No 40
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.81 E-value=0.0011 Score=49.79 Aligned_cols=128 Identities=13% Similarity=0.025 Sum_probs=70.1
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEecc
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGE 118 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~ 118 (187)
..++.|+||+++||+++.+-..++.|.+.-...++. .| |.+ .+.|...++ .+.=++.++++ .+++.|+...++
T Consensus 3 ~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~~-~G--g~~-~~~~~~~~~--~~~g~~~~~~p-~~~l~~~w~~~~ 75 (136)
T cd08901 3 KTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRLE-EG--KTV-TWDWEMYGA--SVPVNVLEIEP-NKRIVIEWGDPG 75 (136)
T ss_pred eEEEEecCCHHHHHHHhcCHHHhccccccCCCcccc-CC--CEE-EEEEEccCC--ceEEEEEEEcC-CCEEEEEecCCC
Confidence 467799999999999999998876653222233332 12 333 355543222 23446777876 588988865431
Q ss_pred ccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 046697 119 HRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMF--VDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 119 ~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~--~~~~~~~gL~~Lk~~le~ 181 (187)
. .-.-++.+.+.+++|+.++.... ..+... .+..... +..=....|+.|+..+|+
T Consensus 76 ~---~s~v~~~l~~~~~ggT~ltl~~~----~~~~~~-~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 76 E---PTTVEWTFEELDDGRTFVTITES----GFPGTD-DEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred C---CEEEEEEEEECCCCcEEEEEEEC----CCCCCc-HHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 1 12223334443324576765432 122221 1111111 223345678999998875
No 41
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0069 Score=46.67 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=56.5
Q ss_pred eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEE
Q 046697 36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRV 114 (187)
Q Consensus 36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~v 114 (187)
....++..|++|+++||+++.|-..++.|.. -..++.... | .+....+...+|. ...+.-+..++++ ++++.|+-
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~g-g~~~~~~~~~~g~-~~~~~~~~~~v~p-~~rIv~tw 83 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTG-GGERVRFRGPDGP-VHSFEGEYLEVVP-PERIVFTW 83 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecC-CceEEeeecCCCC-eeecceEEEEEcC-CcEEEEEe
Confidence 3456788999999999999999999767765 222222211 1 1222234344442 1245667788876 57766665
Q ss_pred Ee--ccccCCCeeeEEEEEEecCC
Q 046697 115 VG--GEHRLNNYRSVTSVNEFQKG 136 (187)
Q Consensus 115 ve--g~~p~~~y~a~~~v~~~~~~ 136 (187)
.- +..|...-..++.+++...+
T Consensus 84 ~~~~~~~~~~~~~v~~~l~~~~~g 107 (149)
T COG3832 84 DFDEDGEPFLKSLVTITLTPEDDG 107 (149)
T ss_pred ccCCCCCcccCceEEEEEEEecCC
Confidence 44 34333344455555665433
No 42
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.69 E-value=0.069 Score=41.47 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=41.1
Q ss_pred hHHHHHHhhcC-CCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEE
Q 046697 48 AHVVWPFVRRF-DNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSF 112 (187)
Q Consensus 48 ae~VW~vi~df-~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY 112 (187)
.++||.-+... .+|..+.|.|.+|++..+.+..-.|.++|+.. .++|++... + .+++.|
T Consensus 20 r~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg~~----~v~E~v~~~-~-~~~V~f 79 (149)
T PF08982_consen 20 REQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFGGA----TVRERVTLY-P-PERVDF 79 (149)
T ss_dssp HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEETTE----EEEEEEEEE-T-TTEEEE
T ss_pred HHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEECCc----EEEEEEEEe-C-CcEEEE
Confidence 46899987754 45888999999999984333578899999433 799998754 3 478888
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.53 E-value=0.059 Score=40.50 Aligned_cols=90 Identities=9% Similarity=0.103 Sum_probs=48.3
Q ss_pred EcCChHHHHHHhhcCCCCccc-cccceeeEec-CCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccC
Q 046697 44 IDAPAHVVWPFVRRFDNPQKY-KHFIKSCNMH-GDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRL 121 (187)
Q Consensus 44 I~apae~VW~vi~df~~~~~w-~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~ 121 (187)
++||+++||+++.|-..++.| .+. .+++. -.| |..+.+ .+ .+.=+..++|+ ++++.|+---.+.+-
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~--~~~~d~~~G--G~f~~~---~~----~~~G~~~ev~p-p~rlv~tw~~~~~~~ 68 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGS--PAEMDAKVG--GKFSLF---NG----SVEGEFTELEK-PKKIVQKWRFRDWEE 68 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCC--CccccCCcC--CEEEEe---cC----ceEEEEEEEcC-CCEEEEEEecCCCCC
Confidence 479999999999998886656 432 23332 112 444432 23 24457777876 477666653222111
Q ss_pred CCe-eeEEEEEEecCCCceEEEEEE
Q 046697 122 NNY-RSVTSVNEFQKGGEIYTIVTE 145 (187)
Q Consensus 122 ~~y-~a~~~v~~~~~~g~~~t~~~~ 145 (187)
..+ ..++.+.+.++++++++....
T Consensus 69 ~~~s~vt~~~~~~~~g~T~lt~~~~ 93 (132)
T PTZ00220 69 DVYSKVTIEFRAVEEDHTELKLTQT 93 (132)
T ss_pred CCceEEEEEEEeCCCCcEEEEEEEe
Confidence 122 223333333334577776544
No 44
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=96.49 E-value=0.066 Score=41.37 Aligned_cols=137 Identities=10% Similarity=0.043 Sum_probs=89.1
Q ss_pred EEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEec
Q 046697 38 SLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGG 117 (187)
Q Consensus 38 ~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg 117 (187)
...+..|+.+|+++++++.|...-....|.+.++.+...+....+-.++.+-++--.++..|.. +++..+.+.-.+++|
T Consensus 4 ~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~~l~~G 82 (146)
T COG2867 4 IERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIRETFTTRVT-LKPTARSIDMKLIDG 82 (146)
T ss_pred eEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhheeeeeeeeee-ecCchhhhhhhhhcC
Confidence 3456789999999999999999843566788888887332234454555554431134555544 555556777788888
Q ss_pred cccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046697 118 EHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMASLH 184 (187)
Q Consensus 118 ~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~~~ 184 (187)
++ +...+.-+..|..++++++.+..++ .+ ........+..+++.....+-+.+++.|.
T Consensus 83 PF--k~L~~~W~F~pl~~~~ckV~f~ldf-eF------~s~ll~~~~g~~f~~~a~~mv~aF~kRA~ 140 (146)
T COG2867 83 PF--KYLKGGWQFTPLSEDACKVEFFLDF-EF------KSRLLGALIGPVFKRLASKMVEAFEKRAK 140 (146)
T ss_pred Ch--hhhcCceEEEECCCCceEEEEEEEe-ee------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 7788888888976677777765543 22 12344555666666666666666666553
No 45
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.85 E-value=0.6 Score=35.96 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=48.5
Q ss_pred ChHHHHHHhh-cCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEe
Q 046697 47 PAHVVWPFVR-RFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVG 116 (187)
Q Consensus 47 pae~VW~vi~-df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vve 116 (187)
..+++|.=+. .-..+..+.|.|.+|++..+++.--.|.++|+.+ .++|++. +++ ..++.|.+-.
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l~Rel~f~~~----~v~e~vt-~~~-~~~v~f~~~~ 82 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVLERELTFGPA----KIRETVT-LEP-PSRVHFLQAD 82 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccccceEEEEecCCCEEEEEEEECCc----eEEEEEE-ecC-CcEEEEEecC
Confidence 4679999866 4555888999999999983322356699999875 7999987 443 5889998876
No 46
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=94.37 E-value=2.3 Score=34.46 Aligned_cols=143 Identities=10% Similarity=0.050 Sum_probs=75.0
Q ss_pred ceeEEEEEEEcCChHHHH-HHhhcCCCCccccccceeeEecCCCCCCe--EEEEEEec-CCCc---ceeeEEEEEEeCCC
Q 046697 35 TCVSLITQRIDAPAHVVW-PFVRRFDNPQKYKHFIKSCNMHGDGGVGS--IREVTVVS-GLPA---STSTERLEILDDEK 107 (187)
Q Consensus 35 ~~~~~v~~~I~apae~VW-~vi~df~~~~~w~p~v~s~~~~G~g~vG~--vR~lt~~~-g~~~---~~v~ErL~~~D~~~ 107 (187)
+... .+..|++|+++++ .++-|......|-+.+.++++...-+..+ ++.+...- +.+. ..+.-|....+..+
T Consensus 49 k~~k-~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 49 KVFR-LEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred cEEE-EEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 4444 5679999999999 66778888889999999988862210111 23222111 1111 12222222222222
Q ss_pred CeEEEEEEecc-cc-------CCCeeeEEEEEEecC--CCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 046697 108 HILSFRVVGGE-HR-------LNNYRSVTSVNEFQK--GGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGV 177 (187)
Q Consensus 108 ~~~sY~vveg~-~p-------~~~y~a~~~v~~~~~--~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~ 177 (187)
..+.....+.+ .| +....+...+.|.++ +.+.++|. ...|+.........-.++-..--..|.+|++
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~---~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~ 204 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWL---LSIDLKGWLPKSIINQVLSQTQVDFANHLRQ 204 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEE---EeecCCCCCCHHHHHHHhHHhHHHHHHHHHH
Confidence 22211112222 12 233445555666643 33555544 4456544455555555555555667888888
Q ss_pred HHhh
Q 046697 178 VSMA 181 (187)
Q Consensus 178 ~le~ 181 (187)
.++.
T Consensus 205 ~~~~ 208 (209)
T cd08905 205 RMAS 208 (209)
T ss_pred HHhc
Confidence 8764
No 47
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=93.45 E-value=3.5 Score=33.44 Aligned_cols=142 Identities=8% Similarity=0.019 Sum_probs=73.7
Q ss_pred ceeEEEEEEEcCChHHHH-HHhhcCCCCccccccceeeEecCCCCCC-e-EEEEEEec-CCCc---ceeeEEEEEEeCCC
Q 046697 35 TCVSLITQRIDAPAHVVW-PFVRRFDNPQKYKHFIKSCNMHGDGGVG-S-IREVTVVS-GLPA---STSTERLEILDDEK 107 (187)
Q Consensus 35 ~~~~~v~~~I~apae~VW-~vi~df~~~~~w~p~v~s~~~~G~g~vG-~-vR~lt~~~-g~~~---~~v~ErL~~~D~~~ 107 (187)
+.. -...+|++|++.++ +++.|......|-+.+.++++...-+.. . ++.++..- +++. ..+.-|-..-+. +
T Consensus 49 ~~f-k~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~-~ 126 (209)
T cd08906 49 KTF-ILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRR-D 126 (209)
T ss_pred cEE-EEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecC-C
Confidence 444 45678999999998 6899999988999999999887321011 1 12222211 1222 122223332232 2
Q ss_pred CeE--EEEEEeccc-cCCCee-eE-----EEEEEe--cCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046697 108 HIL--SFRVVGGEH-RLNNYR-SV-----TSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176 (187)
Q Consensus 108 ~~~--sY~vveg~~-p~~~y~-a~-----~~v~~~--~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk 176 (187)
..+ ..++.-... |..+|. +. ..+.+. +++.+.+||+. ..|+......-..-.++....-.-|.+|+
T Consensus 127 ~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~---~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 127 RYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWIL---NTDLKGRLPRYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred cEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEE---ecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 233332222 233442 22 223332 22345566553 44654445454555555555556678888
Q ss_pred HHHhh
Q 046697 177 VVSMA 181 (187)
Q Consensus 177 ~~le~ 181 (187)
+.++.
T Consensus 204 ~~~~~ 208 (209)
T cd08906 204 QRIRD 208 (209)
T ss_pred HHHhh
Confidence 87764
No 48
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=91.52 E-value=5.3 Score=30.84 Aligned_cols=132 Identities=19% Similarity=0.131 Sum_probs=66.1
Q ss_pred EEEEEcCChHHHHHHhhcCCC----Cccccc---cceeeEecCCCCCCeEEEE-EEec-CC--------CcceeeEEEEE
Q 046697 40 ITQRIDAPAHVVWPFVRRFDN----PQKYKH---FIKSCNMHGDGGVGSIREV-TVVS-GL--------PASTSTERLEI 102 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~----~~~w~p---~v~s~~~~G~g~vG~vR~l-t~~~-g~--------~~~~v~ErL~~ 102 (187)
++..+++|+++||+++.|-.- .+.... .+.+++..|+| -.++.. .+.. .. +.....+|-+.
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~ 80 (159)
T PF10698_consen 3 HSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTRTET 80 (159)
T ss_pred EEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEEEEE
Confidence 567999999999999987322 222222 24444443432 111111 1111 10 11123445566
Q ss_pred E---eCCCCeEEEEEEeccccCCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046697 103 L---DDEKHILSFRVVGGEHRLNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVV 178 (187)
Q Consensus 103 ~---D~~~~~~sY~vveg~~p~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~ 178 (187)
+ ++..++.+|++--...| -...+++.+.+. ++|+.+++..+. ... .|.-.....+++...+...|+...+.
T Consensus 81 w~~~~~g~~~g~~~~~~~G~P-~~~~G~~~L~~~-~~gt~~~~~g~v-~v~--VPlvGgkiE~~v~~~~~~~~~~e~~~ 154 (159)
T PF10698_consen 81 WTPLDDGRRTGTFTVSIPGAP-VSISGTMRLRPD-GGGTRLTVEGEV-KVK--VPLVGGKIEKAVAENLRKLLEAEQEF 154 (159)
T ss_pred EecCCCCeEEEEEEEEecCce-EEEEEEEEEecC-CCCEEEEEEEEE-EEE--EccccHHHHHHHHHHHHHHHHHHHHH
Confidence 6 45566667776543332 457888888774 356666655442 222 22323334444444545555444443
No 49
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=91.33 E-value=6.6 Score=31.62 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=75.4
Q ss_pred EEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCCCc-ceeeEEE---EEEeC--CCCeEE
Q 046697 39 LITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGLPA-STSTERL---EILDD--EKHILS 111 (187)
Q Consensus 39 ~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~~~-~~v~ErL---~~~D~--~~~~~s 111 (187)
-++..|++|++.+.+++.|...-+.|.|.+..++.. ..+..-.+-.+.+ ..|. -.-||=+ ..+|. ++..+.
T Consensus 49 k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~--~~PwPv~~RD~v~~~~~~~~~~~~~~i~ 126 (215)
T cd08877 49 RMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRV--DLPWPLSNREAVFRGFGVDRLEENGQIV 126 (215)
T ss_pred EEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEE--eCceEecceEEEEEEEEEeeeccCCCEE
Confidence 357899999999999999998878999998887765 2221112222222 2221 0112322 11221 334332
Q ss_pred EEE--Eec----------cccC--------CCeeeEEEEEEecCCCceEEEEEEEEeecCCCC-CCHHHHHHHHHHHHHH
Q 046697 112 FRV--VGG----------EHRL--------NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEG-NTVEDTKMFVDTVVKL 170 (187)
Q Consensus 112 Y~v--veg----------~~p~--------~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~-~~~~~~~~~~~~~~~~ 170 (187)
-.+ ++. .+|. ..+.+...+.|.+++.+.++++. ..||... ......-.+...+...
T Consensus 127 i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~---~~DP~g~~IP~~liN~~~k~~~~~ 203 (215)
T cd08877 127 ILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVA---NVDPKMSLVPKSLLNFVARKFAGL 203 (215)
T ss_pred EEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEE---EcCCCcccCCHHHHHHHHHHHHHH
Confidence 222 111 0221 22344455566654445555443 3454333 4566666666777777
Q ss_pred HHHHHHHHHhh
Q 046697 171 NLQKLGVVSMA 181 (187)
Q Consensus 171 gL~~Lk~~le~ 181 (187)
.|..|++.+++
T Consensus 204 ~~~~l~k~~~~ 214 (215)
T cd08877 204 LFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHhc
Confidence 88888887764
No 50
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=5.6 Score=30.60 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=56.4
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEec---CCCc-ceeeEEEEE--EeCCCCeEEE
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVS---GLPA-STSTERLEI--LDDEKHILSF 112 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~---g~~~-~~v~ErL~~--~D~~~~~~sY 112 (187)
....|+||.|.||+..+.-+++....|.-. +..- |+ .++..-++.++- |.|. -.-+-|+++ +|+ ..+|+=
T Consensus 6 ~~~~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~~~FtD 82 (153)
T COG4276 6 YRTTITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-GSRFTD 82 (153)
T ss_pred EeeEecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC-cceeee
Confidence 456899999999999998888544443333 2222 53 233444454432 2221 245677777 775 477888
Q ss_pred EEEeccccCCCeeeEEEEEEe
Q 046697 113 RVVGGEHRLNNYRSVTSVNEF 133 (187)
Q Consensus 113 ~vveg~~p~~~y~a~~~v~~~ 133 (187)
..+.|++|.-+..-+-+..+.
T Consensus 83 v~i~gPfp~~~WrHtH~F~~e 103 (153)
T COG4276 83 VCITGPFPALNWRHTHNFVDE 103 (153)
T ss_pred eeecCCccceeeEEEeeeecC
Confidence 899999987656655554443
No 51
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=89.96 E-value=9.1 Score=30.96 Aligned_cols=166 Identities=11% Similarity=0.044 Sum_probs=83.0
Q ss_pred CChhhhcchhhhHhhhccC----------------CCCCCceeEEEEEEE-cCChHHHHHHhhcCCCCccccccceeeEe
Q 046697 11 LTPEEYAELRPIIERYHKF----------------EQKPNTCVSLITQRI-DAPAHVVWPFVRRFDNPQKYKHFIKSCNM 73 (187)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~I-~apae~VW~vi~df~~~~~w~p~v~s~~~ 73 (187)
.|.|+|++..+++..-..- ..+.-..... +..+ ++|++.+++++.|....+.|-+.+..+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~W~~~~~~~gi~iy~r~~~~~~~~~~k~-~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ 85 (222)
T cd08871 7 PTDADFEEFKKLCDSTDGWKLKYNKNNVKVWTKNPENSSIKMIKV-SAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFD 85 (222)
T ss_pred CCHHHHHHHHHHhcCCCCcEEEEcCCCeEEEEeeCCCCceEEEEE-EEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEE
Confidence 5788888888877542110 1111112222 2344 79999999999998777899999888877
Q ss_pred c-CCCCCCeEEEEEEecCCCc--c-eeeEEEEEEeCCCCeE--EEEEEecccc-CC------CeeeEEEEEEecCCCceE
Q 046697 74 H-GDGGVGSIREVTVVSGLPA--S-TSTERLEILDDEKHIL--SFRVVGGEHR-LN------NYRSVTSVNEFQKGGEIY 140 (187)
Q Consensus 74 ~-G~g~vG~vR~lt~~~g~~~--~-~v~ErL~~~D~~~~~~--sY~vveg~~p-~~------~y~a~~~v~~~~~~g~~~ 140 (187)
. -.+..-.+-...+..-.+. . .+.-|.. .+..+..+ ..++.-...| .. .+.+...+.+.+++++.+
T Consensus 86 ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~v 164 (222)
T cd08871 86 ICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTL 164 (222)
T ss_pred EEEcCCCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEE
Confidence 6 2221123333333321111 1 2222222 22222211 1222211222 12 234444555654445666
Q ss_pred EEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046697 141 TIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMA 181 (187)
Q Consensus 141 t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~ 181 (187)
+++. ..|+..-......-.++....-..|.+|++.+++
T Consensus 165 t~~~---~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 165 TYVT---QNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred EEEE---ecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6543 3454333434444444445455667777777665
No 52
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=89.77 E-value=8.4 Score=32.12 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=31.5
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH 74 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~ 74 (187)
...++++|++++++++.|...-..|-+...+++++
T Consensus 81 ~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI 115 (235)
T cd08873 81 VELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEV 115 (235)
T ss_pred EEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEE
Confidence 34579999999999999999977999999999987
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=89.08 E-value=11 Score=30.50 Aligned_cols=138 Identities=10% Similarity=-0.000 Sum_probs=70.9
Q ss_pred EEEEEcCChHHHHHHhhcCCCC--ccccccceeeEecC--CCCCCeEEEEEEec--CCCc---ceee-EEEEEEeCCCCe
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNP--QKYKHFIKSCNMHG--DGGVGSIREVTVVS--GLPA---STST-ERLEILDDEKHI 109 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~--~~w~p~v~s~~~~G--~g~vG~vR~lt~~~--g~~~---~~v~-ErL~~~D~~~~~ 109 (187)
.+.+|+++++++++++.|..+. +.|-+.+.++++.. ++...-+|. .... ++.. ..+. ......++....
T Consensus 50 ~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~ 128 (208)
T cd08903 50 GEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTIS 128 (208)
T ss_pred EEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEE
Confidence 5678999999999999887653 68999999998872 221222222 1121 1101 1121 122222222222
Q ss_pred EEEEEEecc-c-cCCCee-e-----EEEEEEec--CCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697 110 LSFRVVGGE-H-RLNNYR-S-----VTSVNEFQ--KGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179 (187)
Q Consensus 110 ~sY~vveg~-~-p~~~y~-a-----~~~v~~~~--~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l 179 (187)
+.+..++.+ . |-.+|. + .....+.+ ++++.++|. ...|+.........-.++....-.-|.+|++.+
T Consensus 129 i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~---~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 129 SNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSF---FQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred EeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEE---EEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333334432 2 233332 2 22233332 233455544 455754445555555555455557788888887
Q ss_pred hh
Q 046697 180 MA 181 (187)
Q Consensus 180 e~ 181 (187)
.+
T Consensus 206 ~~ 207 (208)
T cd08903 206 KA 207 (208)
T ss_pred hh
Confidence 64
No 54
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=87.89 E-value=12 Score=29.85 Aligned_cols=35 Identities=17% Similarity=0.439 Sum_probs=29.5
Q ss_pred EEEEEcCChHHHHH-HhhcCCCCccccccceeeEec
Q 046697 40 ITQRIDAPAHVVWP-FVRRFDNPQKYKHFIKSCNMH 74 (187)
Q Consensus 40 v~~~I~apae~VW~-vi~df~~~~~w~p~v~s~~~~ 74 (187)
.+.+|++|+++|.. ++.|....+.|-+.+..+++.
T Consensus 52 ~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i 87 (208)
T cd08868 52 LTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKII 87 (208)
T ss_pred EEEEEcCCHHHHHHHHHcCccccceecCcccceEEE
Confidence 35789999999986 566888888999999998886
No 55
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=86.02 E-value=19 Score=30.06 Aligned_cols=35 Identities=9% Similarity=0.309 Sum_probs=31.9
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH 74 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~ 74 (187)
....+++|++++++++.|...-..|-+.+.++++.
T Consensus 85 ~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vI 119 (240)
T cd08913 85 VEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELV 119 (240)
T ss_pred EEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEE
Confidence 34689999999999999999988999999999997
No 56
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=85.86 E-value=14 Score=28.24 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=31.3
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH 74 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~ 74 (187)
....|++|+++||+++.|....+.|-+.+.++++.
T Consensus 43 ~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl 77 (193)
T cd00177 43 AEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVI 77 (193)
T ss_pred EEEEECCCHHHHHHHHhCCchhhchhhcceEEEEE
Confidence 46789999999999999988877899999999887
No 57
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=84.14 E-value=21 Score=28.98 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=31.1
Q ss_pred EEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697 41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH 74 (187)
Q Consensus 41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~ 74 (187)
..+|++|+++||+++.|...-+.|-+.++++++.
T Consensus 50 e~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl 83 (205)
T cd08874 50 AGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIH 83 (205)
T ss_pred EEEEcCCHHHHHHHHhCcchhhhhHHhhhheeee
Confidence 4588999999999999999988999999999886
No 58
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=82.21 E-value=24 Score=28.28 Aligned_cols=135 Identities=16% Similarity=0.103 Sum_probs=69.0
Q ss_pred EEEE-cCChHHHHHHhhcCCCCccccccceeeEecCCCCC-CeEEEEEEecCCC--c---ceeeEEEEEEe-CCCCeEEE
Q 046697 41 TQRI-DAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGV-GSIREVTVVSGLP--A---STSTERLEILD-DEKHILSF 112 (187)
Q Consensus 41 ~~~I-~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~v-G~vR~lt~~~g~~--~---~~v~ErL~~~D-~~~~~~sY 112 (187)
..++ ++|++.+.+++.|-..-+.|-..+.++++...... | .+.+.+....| . ..+.-|..-.| +....+..
T Consensus 55 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~-~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 55 RGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSG-TEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCC-cEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 3455 78999999999998887789999888877622111 2 22222211111 1 12322322233 22222222
Q ss_pred EEEec-cc------cCCCeeeEEEEEEe--cCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697 113 RVVGG-EH------RLNNYRSVTSVNEF--QKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179 (187)
Q Consensus 113 ~vveg-~~------p~~~y~a~~~v~~~--~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l 179 (187)
..++. .. .+..|.+...+.+. +++++.+++.+. .++........+..++....-..|++|++.+
T Consensus 134 ~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~---~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 134 KGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYF---HNPDGGIPRELAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred eCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEE---ECCCCCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222 11 24557777777776 334455554433 2443334444444444444445566666554
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=81.59 E-value=26 Score=28.18 Aligned_cols=140 Identities=14% Similarity=0.038 Sum_probs=74.1
Q ss_pred eeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEec-CCCCCCeEEEEEEecCC--Cc---ceeeEEEEEEeCCCCe
Q 046697 36 CVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH-GDGGVGSIREVTVVSGL--PA---STSTERLEILDDEKHI 109 (187)
Q Consensus 36 ~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~-G~g~vG~vR~lt~~~g~--~~---~~v~ErL~~~D~~~~~ 109 (187)
...++.+..++|++.+.+++.|-..-+.|-+.+.+++++ -++..+. +.+.+.... |. ..+.-|-...|+.+..
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~ 124 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGS-EIIYWEMQWPKPFANRDYVYVRRYIIDEENKL 124 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCC-EEEEEEEECCCCCCCccEEEEEEEEEcCCCCE
Confidence 344444455999999999999998877899999888887 3222222 223222111 11 2455555556665443
Q ss_pred E---EEEEEecccc-------CCCeeeEEEEEEec---CCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046697 110 L---SFRVVGGEHR-------LNNYRSVTSVNEFQ---KGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLG 176 (187)
Q Consensus 110 ~---sY~vveg~~p-------~~~y~a~~~v~~~~---~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk 176 (187)
+ ++++-....| +..|.+...+.+.. ++|+++++.+. .++..-...-....+.....-.-|.+|+
T Consensus 125 ~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~---~dPgG~IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 125 IVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYF---DNPGVNIPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred EEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEE---eCCCCccCHHHHHHHHHhhccHHHHHHH
Confidence 2 2222211222 35566777777763 24555554332 3533223333333344444445566666
Q ss_pred HHH
Q 046697 177 VVS 179 (187)
Q Consensus 177 ~~l 179 (187)
+..
T Consensus 202 ~a~ 204 (207)
T cd08911 202 NAA 204 (207)
T ss_pred HHH
Confidence 644
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=80.29 E-value=28 Score=27.75 Aligned_cols=135 Identities=15% Similarity=0.058 Sum_probs=67.9
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEec--CCCccee-eEEEEEEeCCCC--eEEEE
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVS--GLPASTS-TERLEILDDEKH--ILSFR 113 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~--g~~~~~v-~ErL~~~D~~~~--~~sY~ 113 (187)
.+.+|++++++|++.+.+.. ..|-+.+.++++... +..=.+-...+.. ......+ .-|.-..+..+. .+.+.
T Consensus 48 ~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~ 125 (197)
T cd08869 48 ASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVET 125 (197)
T ss_pred EEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEE
Confidence 45789999999999887753 689999999988621 1101111122221 1111222 222333333322 22333
Q ss_pred EEec--cccC-----CCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 114 VVGG--EHRL-----NNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 114 vveg--~~p~-----~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
-++. ..|. ..+.+...+.|.+++++.+|++.. .|+ .|....-.......+.-..|..|++.+.
T Consensus 126 Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~---~Dp-~G~iP~wl~N~~~~~~~~~~~~l~~~~~ 195 (197)
T cd08869 126 SVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICR---VDL-RGRSPEWYNKVYGHLCARELLRIRDSFR 195 (197)
T ss_pred CCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEE---ECC-CCCCCceeecchHhHHHHHHHHHHhhcc
Confidence 2321 2232 223344555666545567776543 353 3333322233344566677888877653
No 61
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=75.84 E-value=46 Score=27.81 Aligned_cols=34 Identities=18% Similarity=0.494 Sum_probs=31.2
Q ss_pred EEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697 41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH 74 (187)
Q Consensus 41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~ 74 (187)
+..+++|++++.+++.|...-+.|-+.+.+++++
T Consensus 83 e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI 116 (236)
T cd08914 83 EKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVI 116 (236)
T ss_pred EEEEcCCHHHHHHHHhChhhhchhHHhhceEEEE
Confidence 4588999999999999999988999999999987
No 62
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=74.45 E-value=39 Score=26.41 Aligned_cols=139 Identities=8% Similarity=-0.107 Sum_probs=69.0
Q ss_pred EEEEcCChHH-HHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEecCC-Cc---ceeeEEEEEEeC-CCCeEEEE
Q 046697 41 TQRIDAPAHV-VWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVSGL-PA---STSTERLEILDD-EKHILSFR 113 (187)
Q Consensus 41 ~~~I~apae~-VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~g~-~~---~~v~ErL~~~D~-~~~~~sY~ 113 (187)
...|++++++ +=.++.|....+.|-+.+..+++... +.-..+....++.-. +. ..+.-|-...+. ....+...
T Consensus 50 ~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~ 129 (206)
T smart00234 50 VGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDV 129 (206)
T ss_pred EEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEE
Confidence 4677888887 55677788887899999999888621 111344444433221 22 122122222222 22223332
Q ss_pred EEecc-cc-------CCCeeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046697 114 VVGGE-HR-------LNNYRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSMAS 182 (187)
Q Consensus 114 vveg~-~p-------~~~y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le~~ 182 (187)
-++.+ .| ...+.+...+.+.+++.+++|+... .|+...........++....-..+..|++.+++.
T Consensus 130 Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~---~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 130 SVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSH---ADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred ECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEE---EecCCCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 22222 12 1334555566666544466776543 3532223233344444444455566666666543
No 63
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.20 E-value=50 Score=28.62 Aligned_cols=124 Identities=12% Similarity=0.222 Sum_probs=72.6
Q ss_pred CceeEEEEEEEcCChHHHHHHhhcCCCCccccccceeeEecC-CCCCCeEEEEEEecCCCcceeeEEEEEEeCC-CCeEE
Q 046697 34 NTCVSLITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHG-DGGVGSIREVTVVSGLPASTSTERLEILDDE-KHILS 111 (187)
Q Consensus 34 ~~~~~~v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G-~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~-~~~~s 111 (187)
+.+..+.+..+|++++.+++.|.+-...+.|.... .++.+ .| |..- +=+|. ++.|-++ +-+. .=.+.
T Consensus 171 ~t~di~l~~tfn~~~~eLy~~fld~~rv~~wt~S~--a~l~~~~~--g~f~---lf~Gn---Vtg~~~~-~e~~K~Iv~k 239 (301)
T KOG2936|consen 171 PTADISLSATFNCRVDELYEIFLDPERVKAWTRSP--AELEADPG--GKFS---LFDGN---VTGEFLE-LEKNKKIVMK 239 (301)
T ss_pred ccccceehhhcCCCHHHHHHHHhcHHHHHHhcCCh--hhcccCCC--CceE---Eeccc---ceeeeee-ecCCCeEEEE
Confidence 33666778899999999999999999988997533 23432 23 5443 33564 4444443 4333 33467
Q ss_pred EEEEeccccCCCeeeEEEEEEecCCC-ceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 046697 112 FRVVGGEHRLNNYRSVTSVNEFQKGG-EIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVS 179 (187)
Q Consensus 112 Y~vveg~~p~~~y~a~~~v~~~~~~g-~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~l 179 (187)
|++-+=+ ..+.|++.+.....+| ++++... .++|.+. ++..+.-.+.+| +..|++.+
T Consensus 240 Wrl~~Wp---~~~~atI~~~f~~~~~~t~l~~~~----kgVP~~e-ee~~~~~wq~yy---f~~Ik~~F 297 (301)
T KOG2936|consen 240 WRLKSWP---DGHDATITLTFYESQGETKLQVKQ----KGVPIGE-EENTRQGWQEYY---FEPIKATF 297 (301)
T ss_pred EecccCC---CCccceEEEEEecCCCceEEEEEe----cCCCcch-hHHHHhhHHHHh---hhHHHHhh
Confidence 8876532 3467888877764433 5555432 2566654 333333333333 44555544
No 64
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=56.05 E-value=7 Score=27.78 Aligned_cols=45 Identities=20% Similarity=0.390 Sum_probs=31.9
Q ss_pred hhhhcch--hhhHhhhccCCCCCCceeEEEEEEEcCChHHHHHHhhc-CCCC
Q 046697 13 PEEYAEL--RPIIERYHKFEQKPNTCVSLITQRIDAPAHVVWPFVRR-FDNP 61 (187)
Q Consensus 13 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~I~apae~VW~vi~d-f~~~ 61 (187)
.+|+.+. ++-..+.|+|-+...+|+. -|..-.|.+|++++. ++..
T Consensus 27 eee~E~~~~~~~~~~~~~~~~~~~kWYt----PIKGrlDALwaLlRr~YDrV 74 (95)
T PF05586_consen 27 EEEFEPPMIRPPPKPPPTHKPPQRKWYT----PIKGRLDALWALLRRQYDRV 74 (95)
T ss_pred cccccCccCCCCCCCCCCCCCCCCcCcc----CccchHHHHHHHHHhcccee
Confidence 3455444 4555667888888999995 467778899999985 4434
No 65
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=53.42 E-value=1.1e+02 Score=24.19 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=30.0
Q ss_pred EEEEEcCChHHHHHHhhc--CCCCccccccceeeEec
Q 046697 40 ITQRIDAPAHVVWPFVRR--FDNPQKYKHFIKSCNMH 74 (187)
Q Consensus 40 v~~~I~apae~VW~vi~d--f~~~~~w~p~v~s~~~~ 74 (187)
.+..|++++++|.+++.| ....+.|-+.+..+++.
T Consensus 50 ~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~l 86 (206)
T cd08867 50 AEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVL 86 (206)
T ss_pred EEEEEcCCHHHHHHHHHhcCccccccccccccceEEE
Confidence 457899999999999998 55567899999999887
No 66
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=37.18 E-value=24 Score=26.80 Aligned_cols=32 Identities=28% Similarity=0.526 Sum_probs=26.7
Q ss_pred CCCChhhhcchhhhHhhhccCCCCCCceeEEE
Q 046697 9 QGLTPEEYAELRPIIERYHKFEQKPNTCVSLI 40 (187)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 40 (187)
-|||||||.+...-.+.--..+...+.|.++.
T Consensus 38 ~g~tpeefir~K~eFak~T~Lg~Ge~TCFGSL 69 (153)
T COG4008 38 LGLTPEEFIRIKEEFAKRTMLGYGENTCFGSL 69 (153)
T ss_pred hCCCHHHHHHHHHHHhhccccccCCCccccee
Confidence 48999999988888877777788888888875
No 67
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=35.14 E-value=1.3e+02 Score=19.79 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=30.9
Q ss_pred CccccccceeeEecCC-CCCCeEEEEEEe---cCCCcceeeEEEE-EEeCCCCeEEEEEEecc
Q 046697 61 PQKYKHFIKSCNMHGD-GGVGSIREVTVV---SGLPASTSTERLE-ILDDEKHILSFRVVGGE 118 (187)
Q Consensus 61 ~~~w~p~v~s~~~~G~-g~vG~vR~lt~~---~g~~~~~v~ErL~-~~D~~~~~~sY~vveg~ 118 (187)
.+.|.|..++|.+.+. +.....+.+.|. +++ ...=.|. .+.+....|.|+|....
T Consensus 15 F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G---~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 15 FRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDG---VWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTT---EEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEECCCCCEEEEEEEeeecCCCceEEeeecCCCC---EEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 5789999999999843 321123334444 343 4444444 34433468899888654
No 68
>TIGR03277 methan_mark_9 putative methanogenesis marker domain 9. A gene for a protein that contains a copy of this domain, to date, is found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. A 69-amino acid core region of this 110-amino acid domain contains eight invariant Cys residues, including two copies of a motif [WFY]CCxxKPC. These motifs could be consistent with predicted metal-binding transcription factor as was suggested for the COG4008 family. Some members of this family have an additional N-terminal domain of about 250 amino acids from the nifR3 family of predicted TIM-barrel proteins.
Probab=34.70 E-value=30 Score=25.39 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=27.2
Q ss_pred CCCChhhhcchhhhHhhhccCCCCCCceeEEE
Q 046697 9 QGLTPEEYAELRPIIERYHKFEQKPNTCVSLI 40 (187)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 40 (187)
-|+||+||+...+-....-.-+...+.|.++.
T Consensus 37 ~~~sp~ef~~~K~ef~~~T~L~~G~~TCFGSL 68 (109)
T TIGR03277 37 LGLSPQEFVRIKEEFAKGTPLGQGENTCFGSL 68 (109)
T ss_pred cCCCHHHHHHHHHHHhccCcccCCCCccccce
Confidence 48999999999888887777788888888876
No 69
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=34.51 E-value=17 Score=19.21 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=10.5
Q ss_pred CCChhhhcchhhhH
Q 046697 10 GLTPEEYAELRPII 23 (187)
Q Consensus 10 ~~~~~~~~~~~~~~ 23 (187)
.++|++|.++.+.+
T Consensus 9 PMSPddy~~l~~~V 22 (23)
T PF12162_consen 9 PMSPDDYDELERMV 22 (23)
T ss_dssp -S-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 36899999998876
No 70
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=31.55 E-value=25 Score=16.63 Aligned_cols=11 Identities=55% Similarity=1.171 Sum_probs=6.7
Q ss_pred CCCCCCChhhh
Q 046697 6 APPQGLTPEEY 16 (187)
Q Consensus 6 ~~~~~~~~~~~ 16 (187)
.||||..|.-|
T Consensus 2 ~ppqG~pPQ~~ 12 (15)
T PF02162_consen 2 YPPQGYPPQGY 12 (15)
T ss_pred CCCcCCCCCCC
Confidence 46777666543
No 71
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=30.37 E-value=2.9e+02 Score=22.27 Aligned_cols=136 Identities=9% Similarity=-0.037 Sum_probs=69.1
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEec-CCC----cceeeEEEE-EEeCCCCeEEE
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVVS-GLP----ASTSTERLE-ILDDEKHILSF 112 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~~-g~~----~~~v~ErL~-~~D~~~~~~sY 112 (187)
.+.+|+++++++|+.+.+-.....|=+.+..+++... +..=.|-+..... +.+ -..+--|.. -++.....+.+
T Consensus 50 ~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~ 129 (204)
T cd08904 50 VEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSS 129 (204)
T ss_pred EEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEE
Confidence 4678999999999999885556789888888877621 1101222211221 111 111111111 12332222334
Q ss_pred EEEecc--ccCCCee------eEEEEEEecCC--CceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046697 113 RVVGGE--HRLNNYR------SVTSVNEFQKG--GEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVV 178 (187)
Q Consensus 113 ~vveg~--~p~~~y~------a~~~v~~~~~~--g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~ 178 (187)
.-++.+ +|-++|. +-+.+.|..++ +++++|.. ..|+---......-+++...+-..+.+|++.
T Consensus 130 ~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~---~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~ 202 (204)
T cd08904 130 VSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFV---QPELRGNLSRSVIEKTMPTNLVNLILDAKDG 202 (204)
T ss_pred EecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEE---EeCCCCCCCHHHHHHHhHHHHHHHHHHHHHh
Confidence 445543 2334443 33455565432 35566554 4575444444455555555555556666654
No 72
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=28.20 E-value=1e+02 Score=24.75 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=40.9
Q ss_pred EcCChHHHHHHhhcCCCCccccccceeeEecCCCCCCeEEEEEEecCCCcceeeEEEEEEeCCCCeEEEEEEeccccCCC
Q 046697 44 IDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNN 123 (187)
Q Consensus 44 I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~g~vG~vR~lt~~~g~~~~~v~ErL~~~D~~~~~~sY~vveg~~p~~~ 123 (187)
|+.+..|+|. |-++-..-.|.--.+.+..+|.. ....+++..+..-+..-+-|-.+|..+..+.|+|-|-..| .
T Consensus 3 ~~i~v~K~W~---d~~n~~~~RP~sI~v~L~~ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~--~ 76 (187)
T cd00222 3 VNLSGTKIWD---DYDDKFKKRPAKISVQLLANGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVP--D 76 (187)
T ss_pred EEEEEEEEEC---CCCCCCCCCCCEEEEEEEeCCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCC--C
Confidence 4555677786 22221111222113344433322 2345555544321223456677787889999999997664 3
Q ss_pred eeeE
Q 046697 124 YRSV 127 (187)
Q Consensus 124 y~a~ 127 (187)
|...
T Consensus 77 Y~~~ 80 (187)
T cd00222 77 YETP 80 (187)
T ss_pred cEEE
Confidence 7665
No 73
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=27.37 E-value=1e+02 Score=18.85 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=9.8
Q ss_pred CeEEEEEEecCC
Q 046697 80 GSIREVTVVSGL 91 (187)
Q Consensus 80 G~vR~lt~~~g~ 91 (187)
|++|.++|.++.
T Consensus 1 GAvR~~kFsP~~ 12 (43)
T PF10313_consen 1 GAVRCCKFSPEP 12 (43)
T ss_pred CCeEEEEeCCCC
Confidence 789999998654
No 74
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=25.40 E-value=3.5e+02 Score=21.58 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=22.6
Q ss_pred eeeEEEEEEeCCCCeEEEEEEeccc
Q 046697 95 TSTERLEILDDEKHILSFRVVGGEH 119 (187)
Q Consensus 95 ~v~ErL~~~D~~~~~~sY~vveg~~ 119 (187)
.+||-+..+++.+..+.|.|-++.+
T Consensus 49 kvKE~~~~ynp~~~~~~Y~is~~~l 73 (178)
T PF02087_consen 49 KVKEALYHYNPKNKTYFYDISESKL 73 (178)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred ceEEEEEEecCCCceEEEEeeeeec
Confidence 8999999999999999999988765
No 75
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=25.28 E-value=3.8e+02 Score=21.89 Aligned_cols=34 Identities=6% Similarity=0.079 Sum_probs=29.1
Q ss_pred EEEEcCChHHHHHHhhcCCCCccccccceeeEec
Q 046697 41 TQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMH 74 (187)
Q Consensus 41 ~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~ 74 (187)
+.+|+...++||+.+.+-.....|=+.++++++.
T Consensus 52 Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Ii 85 (202)
T cd08902 52 QGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDII 85 (202)
T ss_pred EEEecCCHHHHHHHHhcccchhcccchhhheeHh
Confidence 4677888999999998866567899999999987
No 76
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=22.67 E-value=4.2e+02 Score=21.44 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=70.6
Q ss_pred EEEEEcCChHHHHHHhhcCCCCccccccceeeEecCC-CCCCeEEEEEEe---c-CCCcce-eeEEEEEEeCCCCeEEEE
Q 046697 40 ITQRIDAPAHVVWPFVRRFDNPQKYKHFIKSCNMHGD-GGVGSIREVTVV---S-GLPAST-STERLEILDDEKHILSFR 113 (187)
Q Consensus 40 v~~~I~apae~VW~vi~df~~~~~w~p~v~s~~~~G~-g~vG~vR~lt~~---~-g~~~~~-v~ErL~~~D~~~~~~sY~ 113 (187)
.+++|++++++|...+-|- ...|-+.+..+.++.. + .....+.+. . ..+... +.-|.-..|..+..+.-.
T Consensus 56 ~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld--~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~ 131 (204)
T cd08908 56 TTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILD--SQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALL 131 (204)
T ss_pred EEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecC--CCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEE
Confidence 3468999999999999877 5689888888877621 1 111222221 1 111122 333343334444444322
Q ss_pred EE---eccccCCC-----eeeEEEEEEecCCCceEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 046697 114 VV---GGEHRLNN-----YRSVTSVNEFQKGGEIYTIVTESYVVDIPEGNTVEDTKMFVDTVVKLNLQKLGVVSM 180 (187)
Q Consensus 114 vv---eg~~p~~~-----y~a~~~v~~~~~~g~~~t~~~~~~~~d~p~~~~~~~~~~~~~~~~~~gL~~Lk~~le 180 (187)
+. -...|... +.+...+.|.+.+++.+|.+. ..| |.+....-.......+...-|..|++.+.
T Consensus 132 ~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~---~~D-PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 132 ATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMC---RID-LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred EeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEE---EeC-CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 22 22334442 233334445443446666543 335 44444545555556677777888887664
No 77
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=21.37 E-value=4.3e+02 Score=21.07 Aligned_cols=31 Identities=3% Similarity=0.205 Sum_probs=25.3
Q ss_pred EEEEc-CChHHHHHHhhcCCCCccccccceee
Q 046697 41 TQRID-APAHVVWPFVRRFDNPQKYKHFIKSC 71 (187)
Q Consensus 41 ~~~I~-apae~VW~vi~df~~~~~w~p~v~s~ 71 (187)
..+++ ++++.+.+++.|...-+.|-+.+.++
T Consensus 54 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~ 85 (207)
T cd08910 54 FGVLEDCSPSLLADVYMDLEYRKQWDQYVKEL 85 (207)
T ss_pred EEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhh
Confidence 34665 89999999999988877898887764
Done!