BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046700
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LXE6|TT39C_DANRE Tetratricopeptide repeat protein 39C OS=Danio rerio GN=ttc39c PE=2
SV=1
Length = 579
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 37 KGNHQIRRRRSQSVTDEDLQELKGSIELGFG-FQADSPELDPKLTDTLPALGF 88
+ NH VTDE L LKGS+ G+G F + P L + LGF
Sbjct: 190 QANHNTSTGSGGRVTDEVLDRLKGSVSFGYGLFHLCISMVPPHLLKIVNLLGF 242
>sp|A1WVC2|RL3_HALHL 50S ribosomal protein L3 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rplC PE=3 SV=1
Length = 216
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 46 RSQSVTDEDLQELKGSIELGFGFQADSPELDPKLTDTLPALGFYCAVNKHYNDRLSRCSS 105
+ Q +DE++ E GSI++G GF+A ++D +T T GF V +H N R R +
Sbjct: 87 KGQRASDEEMPETGGSIDVG-GFEAGQ-KVD--VTGTTKGRGFAGTVRRH-NFRAQRNTH 141
Query: 106 SSS 108
+S
Sbjct: 142 GNS 144
>sp|Q8VE09|TT39C_MOUSE Tetratricopeptide repeat protein 39C OS=Mus musculus GN=Ttc39c PE=2
SV=2
Length = 580
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 39 NHQIRRRRSQSVTDEDLQELKGSIELGFG-FQADSPELDPKLTDTLPALGF 88
NH + ++ VT+E L LKG++ G+G F + P L + LGF
Sbjct: 197 NHVV----AEGVTEESLSRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGF 243
>sp|Q5XF89|AT133_MOUSE Probable cation-transporting ATPase 13A3 OS=Mus musculus GN=Atp13a3
PE=1 SV=1
Length = 1219
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 84 PALGFYCAVNKHYNDRLSRCSSSSSICSD 112
P G +N HY D LS+CS SS+I S+
Sbjct: 775 PKDGKVAKINWHYTDSLSQCSESSAIDSE 803
>sp|P39309|YTFA_ECOLI Putative uncharacterized protein YtfA OS=Escherichia coli (strain
K12) GN=ytfA PE=5 SV=1
Length = 108
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 37 KGNHQIRRRRSQSVTDEDLQELKGSIELGFGFQADSPELDP-KLTDTLPALGFYCAVNKH 95
KG H + +R + LQ ++ ++ G P++DP ++ + ALG Y +N+H
Sbjct: 8 KGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGGYYLINQH 67
>sp|Q9Z137|B3GA2_RAT Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
OS=Rattus norvegicus GN=B3gat2 PE=1 SV=1
Length = 324
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 1 MANPNAPPTALPLPRPLYKQRSWAPDAEREE----AWLRRKGNHQ 41
+A P T L +P P +R W P A + AWLR++ HQ
Sbjct: 131 LARAGLPNTHLHVPTPRRYKRPWLPRATEQRNAGLAWLRQRHQHQ 175
>sp|P59270|B3GA2_MOUSE Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
OS=Mus musculus GN=B3gat2 PE=2 SV=1
Length = 324
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 1 MANPNAPPTALPLPRPLYKQRSWAPDAEREE----AWLRRKGNHQ 41
+A P T L +P P +R W P A + AWLR++ HQ
Sbjct: 131 LARAGLPNTHLHVPTPRRYKRPWLPRATEQRNAGLAWLRQRHQHQ 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,994,903
Number of Sequences: 539616
Number of extensions: 2554221
Number of successful extensions: 7227
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7218
Number of HSP's gapped (non-prelim): 25
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)