Query 046700
Match_columns 154
No_of_seqs 103 out of 123
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lqv_P Splicing factor 3B subu 37.3 21 0.00071 22.2 2.1 31 23-59 2-32 (39)
2 2fho_A Spliceosomal protein SF 32.7 18 0.00061 23.2 1.3 16 45-60 17-32 (47)
3 1baz_A ARC repressor; transcri 29.1 28 0.00095 21.8 1.8 14 128-141 15-28 (53)
4 2kmu_A ATP-dependent DNA helic 24.7 50 0.0017 21.5 2.5 18 128-145 6-23 (56)
5 3zwt_A Dihydroorotate dehydrog 22.3 20 0.0007 30.4 0.3 18 51-68 69-86 (367)
6 1und_A Advillin, P92; actin bi 22.3 27 0.00091 21.1 0.7 13 49-61 2-14 (37)
7 1wy3_A Villin; structural prot 22.0 27 0.00094 20.8 0.7 12 50-61 1-12 (35)
8 3i65_A Dihydroorotate dehydrog 15.3 36 0.0012 29.8 0.2 17 52-68 104-120 (415)
9 4day_C Fanconi anemia group M 15.3 36 0.0012 20.9 0.1 15 62-77 18-32 (37)
10 2w7n_A TRFB transcriptional re 14.2 61 0.0021 23.1 1.1 15 48-62 3-17 (101)
No 1
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=37.27 E-value=21 Score=22.16 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCcchhHHHHHHHhhccccccccCCCCCCchhhHhhh
Q 046700 23 WAPDAEREEAWLRRKGNHQIRRRRSQSVTDEDLQELK 59 (154)
Q Consensus 23 ~s~d~~reeaw~rrk~~~~~~~rrskSlTD~DleELK 59 (154)
|.|+.--.-.|+|== . .|.+-|||+||+.+=
T Consensus 2 mtpe~~~~~~~~~ei---~---~RNrpltDEeLD~mL 32 (39)
T 3lqv_P 2 MTPEQLQAWRWEREI---D---ERNRPLSDEELDAMF 32 (39)
T ss_dssp CCHHHHHHHHHHHHH---H---HTTCCCCHHHHHHTC
T ss_pred CCHHHHHHHHhhccc---h---hhcCCCCHHHHHHhC
Confidence 445555555565522 1 357899999999863
No 2
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.72 E-value=18 Score=23.23 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=13.0
Q ss_pred cCCCCCCchhhHhhhh
Q 046700 45 RRSQSVTDEDLQELKG 60 (154)
Q Consensus 45 rrskSlTD~DleELKG 60 (154)
.|.+-|||+||+.+==
T Consensus 17 ~rnrpltDEeLD~~LP 32 (47)
T 2fho_A 17 ERNRPLSDEELDAMFP 32 (47)
T ss_dssp CCCCCSCTTHHHHHSC
T ss_pred cccCCCCHHHHHHhCC
Confidence 4678899999998754
No 3
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=29.09 E-value=28 Score=21.80 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHH
Q 046700 128 PETVKMRLKQWAQV 141 (154)
Q Consensus 128 p~dvK~rLK~WAqa 141 (154)
|.+++.+|+.||+.
T Consensus 15 p~eL~~~l~~~A~~ 28 (53)
T 1baz_A 15 PREVLDLVRKVAEE 28 (53)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 57999999999975
No 4
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=24.70 E-value=50 Score=21.52 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 046700 128 PETVKMRLKQWAQVVACS 145 (154)
Q Consensus 128 p~dvK~rLK~WAqaVA~s 145 (154)
-.++|.+||.|-++.+-.
T Consensus 6 ~~~lk~~LK~WE~~F~~~ 23 (56)
T 2kmu_A 6 LRDVRERLQAWERAFRRQ 23 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368999999999998743
No 5
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=22.31 E-value=20 Score=30.43 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=16.0
Q ss_pred CchhhHhhhhhhhcCCcC
Q 046700 51 TDEDLQELKGSIELGFGF 68 (154)
Q Consensus 51 TD~DleELKGc~DLGFgF 68 (154)
+|-+-++++++.+|||||
T Consensus 69 ~~~~~~~~~~~~~~g~G~ 86 (367)
T 3zwt_A 69 FDKHGEAVDGLYKMGFGF 86 (367)
T ss_dssp SSTTSSSHHHHHHTTCSE
T ss_pred cCCCHHHHHHHHhcCcCe
Confidence 567778999999999999
No 6
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=22.27 E-value=27 Score=21.07 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.2
Q ss_pred CCCchhhHhhhhh
Q 046700 49 SVTDEDLQELKGS 61 (154)
Q Consensus 49 SlTD~DleELKGc 61 (154)
-|||+||++|=|+
T Consensus 2 yLsd~dF~~vFgm 14 (37)
T 1und_A 2 YLSEQDFVSVFGI 14 (37)
T ss_dssp CCCHHHHHHHHSS
T ss_pred CCCHHHHHHHHCc
Confidence 3899999998664
No 7
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=22.01 E-value=27 Score=20.81 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=9.3
Q ss_pred CCchhhHhhhhh
Q 046700 50 VTDEDLQELKGS 61 (154)
Q Consensus 50 lTD~DleELKGc 61 (154)
|||+||++|=|+
T Consensus 1 Lsd~dF~~vFgm 12 (35)
T 1wy3_A 1 LSDEDFKAVFGM 12 (35)
T ss_dssp CCHHHHHHHHSS
T ss_pred CCHHHHHHHHCC
Confidence 688999888654
No 8
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=15.32 E-value=36 Score=29.83 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=15.2
Q ss_pred chhhHhhhhhhhcCCcC
Q 046700 52 DEDLQELKGSIELGFGF 68 (154)
Q Consensus 52 D~DleELKGc~DLGFgF 68 (154)
|-+-+++.++.+|||||
T Consensus 104 dk~~~~~~~l~~lGfG~ 120 (415)
T 3i65_A 104 DKNGVCIDSILKLGFSF 120 (415)
T ss_dssp STTCSSHHHHHTTTCSE
T ss_pred CCCHHHHHHHHHcCCCe
Confidence 66778999999999998
No 9
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=15.26 E-value=36 Score=20.86 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=9.7
Q ss_pred hhcCCcCCCCCCCCCc
Q 046700 62 IELGFGFQADSPELDP 77 (154)
Q Consensus 62 ~DLGFgF~~~~~d~~p 77 (154)
+||||-.+ ++.+++.
T Consensus 18 FDLGf~~~-dSDde~~ 32 (37)
T 4day_C 18 FDLGFCSP-DSDDEIL 32 (37)
T ss_pred eccccccC-Ccchhhh
Confidence 68999875 4555443
No 10
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=14.22 E-value=61 Score=23.11 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=13.5
Q ss_pred CCCCchhhHhhhhhh
Q 046700 48 QSVTDEDLQELKGSI 62 (154)
Q Consensus 48 kSlTD~DleELKGc~ 62 (154)
|-+|.++||.+.+++
T Consensus 3 ~rmT~~eFe~~~~~l 17 (101)
T 2w7n_A 3 KRLTESQFQEAIQGL 17 (101)
T ss_dssp CCCCHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHccC
Confidence 459999999999998
Done!