Query 046700
Match_columns 154
No_of_seqs 103 out of 123
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 05:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046700.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046700hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tv5a1 c.1.4.1 (A:158-566) Di 36.7 3.7 0.00027 33.1 0.2 18 51-68 70-87 (409)
2 d1ijwc_ a.4.1.2 (C:) HIN recom 34.0 9.7 0.00071 22.3 1.8 23 45-67 1-23 (47)
3 d1unda_ a.14.1.1 (A:) Advillin 26.5 9.3 0.00068 21.7 0.7 12 50-61 2-13 (36)
4 d1yu8x1 a.14.1.1 (X:42-76) Vil 25.8 9.9 0.00072 21.4 0.7 12 50-61 1-12 (35)
5 d1d3ga_ c.1.4.1 (A:) Dihydroor 24.2 7.8 0.00057 30.1 0.1 18 51-68 69-86 (367)
6 d2g9wa1 a.4.5.39 (A:3-124) Hyp 18.6 18 0.0013 23.9 1.1 16 48-63 103-118 (122)
7 d1sd4a_ a.4.5.39 (A:) Penicill 18.4 21 0.0016 23.7 1.4 17 47-63 101-117 (122)
8 d1f54a_ a.39.1.5 (A:) Calmodul 17.9 22 0.0016 21.1 1.3 18 47-64 1-18 (77)
9 d2csba4 a.60.2.4 (A:465-519) T 16.6 21 0.0015 21.6 0.8 36 26-61 13-54 (55)
10 d2p3ra2 c.55.1.4 (A:254-500) G 13.9 72 0.0052 23.3 3.6 27 120-146 215-241 (247)
No 1
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}
Probab=36.74 E-value=3.7 Score=33.13 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=16.7
Q ss_pred CchhhHhhhhhhhcCCcC
Q 046700 51 TDEDLQELKGSIELGFGF 68 (154)
Q Consensus 51 TD~DleELKGc~DLGFgF 68 (154)
.|-+-+.++++.+|||||
T Consensus 70 ~dk~~~~i~~~~~lGfG~ 87 (409)
T d1tv5a1 70 FDKNGVCIDSILKLGFSF 87 (409)
T ss_dssp TTTTCSSHHHHHTTTCSE
T ss_pred cCCCHHHHHHHHhcCCCe
Confidence 777889999999999999
No 2
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=34.04 E-value=9.7 Score=22.34 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=19.6
Q ss_pred cCCCCCCchhhHhhhhhhhcCCc
Q 046700 45 RRSQSVTDEDLQELKGSIELGFG 67 (154)
Q Consensus 45 rrskSlTD~DleELKGc~DLGFg 67 (154)
+|.+.|||+++++.+-.++-|.-
T Consensus 1 GR~~~lt~~q~~~a~~l~~~G~s 23 (47)
T d1ijwc_ 1 GRPRAINKHEQEQISRLLEKGHP 23 (47)
T ss_dssp CCCCSSCHHHHHHHHHHHHTTCC
T ss_pred CCCCcCCHHHHHHHHHHHHCCCC
Confidence 36788999999999999998753
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.51 E-value=9.3 Score=21.66 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=9.8
Q ss_pred CCchhhHhhhhh
Q 046700 50 VTDEDLQELKGS 61 (154)
Q Consensus 50 lTD~DleELKGc 61 (154)
|||+||++|=|+
T Consensus 2 Lsd~dF~~vFgm 13 (36)
T d1unda_ 2 LSEQDFVSVFGI 13 (36)
T ss_dssp CCHHHHHHHHSS
T ss_pred CCHHHHHHHHCc
Confidence 789999998664
No 4
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.79 E-value=9.9 Score=21.41 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=9.5
Q ss_pred CCchhhHhhhhh
Q 046700 50 VTDEDLQELKGS 61 (154)
Q Consensus 50 lTD~DleELKGc 61 (154)
|||+||++|=|+
T Consensus 1 Lsd~dF~~vfgm 12 (35)
T d1yu8x1 1 LSDEDFKAVFGM 12 (35)
T ss_dssp SCHHHHHHHHSS
T ss_pred CCHHHHHHHHCC
Confidence 789999988664
No 5
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.21 E-value=7.8 Score=30.15 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=15.9
Q ss_pred CchhhHhhhhhhhcCCcC
Q 046700 51 TDEDLQELKGSIELGFGF 68 (154)
Q Consensus 51 TD~DleELKGc~DLGFgF 68 (154)
+|.+-++++.+.++||||
T Consensus 69 ~~~~~~~i~~~~~~G~G~ 86 (367)
T d1d3ga_ 69 FDKHGEAVDGLYKMGFGF 86 (367)
T ss_dssp SSTTSSSHHHHHHHTCSE
T ss_pred CCCCHHHHHHHhhcCCcE
Confidence 456778999999999998
No 6
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=18.62 E-value=18 Score=23.94 Aligned_cols=16 Identities=13% Similarity=0.381 Sum_probs=14.0
Q ss_pred CCCCchhhHhhhhhhh
Q 046700 48 QSVTDEDLQELKGSIE 63 (154)
Q Consensus 48 kSlTD~DleELKGc~D 63 (154)
..||++|++||+..+|
T Consensus 103 ~~ls~~el~~L~~ll~ 118 (122)
T d2g9wa1 103 ERVGADEADALRRALA 118 (122)
T ss_dssp HHSCHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHH
Confidence 4599999999998876
No 7
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=18.41 E-value=21 Score=23.70 Aligned_cols=17 Identities=12% Similarity=0.550 Sum_probs=14.9
Q ss_pred CCCCCchhhHhhhhhhh
Q 046700 47 SQSVTDEDLQELKGSIE 63 (154)
Q Consensus 47 skSlTD~DleELKGc~D 63 (154)
.+.||++|++||+..++
T Consensus 101 ~~~ls~~el~eL~~~l~ 117 (122)
T d1sd4a_ 101 NEELNNKEIEELRDILN 117 (122)
T ss_dssp TTCSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47799999999998876
No 8
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.89 E-value=22 Score=21.12 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=14.9
Q ss_pred CCCCCchhhHhhhhhhhc
Q 046700 47 SQSVTDEDLQELKGSIEL 64 (154)
Q Consensus 47 skSlTD~DleELKGc~DL 64 (154)
+..||+++++|++-++..
T Consensus 1 ~~~lt~eqi~el~~~F~~ 18 (77)
T d1f54a_ 1 SSNLTEEQIAEFKEAFAL 18 (77)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 357999999999988776
No 9
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=16.61 E-value=21 Score=21.64 Aligned_cols=36 Identities=36% Similarity=0.549 Sum_probs=23.8
Q ss_pred chhHHHHHHHhhccccc------cccCCCCCCchhhHhhhhh
Q 046700 26 DAEREEAWLRRKGNHQI------RRRRSQSVTDEDLQELKGS 61 (154)
Q Consensus 26 d~~reeaw~rrk~~~~~------~~rrskSlTD~DleELKGc 61 (154)
|-+|-|-..++-+.-.+ ..-|...|||..+.||||.
T Consensus 13 dreraerllkkyggyskvreagveelredgltdaqirelkgl 54 (55)
T d2csba4 13 DRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELKGL 54 (55)
T ss_dssp CHHHHHHHHHHHTSHHHHHTSCHHHHHHTTCCHHHHHHHHTC
T ss_pred cHHHHHHHHHHhcChhHHHHhhHHHHHHccccHHHHHHhhcC
Confidence 44555656666554433 1234578999999999996
No 10
>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli [TaxId: 562]}
Probab=13.86 E-value=72 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHhh
Q 046700 120 SIIDPGDGPETVKMRLKQWAQVVACSV 146 (154)
Q Consensus 120 ~I~spgD~p~dvK~rLK~WAqaVA~sV 146 (154)
++..|.-+..+...+++.|.++|..+.
T Consensus 215 ~~~~P~~~~~~~~~~y~~W~~av~rs~ 241 (247)
T d2p3ra2 215 REFRPGIETTERNYRYAGWKKAVKRAM 241 (247)
T ss_dssp EEECCCSCHHHHHHHHHHHHHHHHHHS
T ss_pred cEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 456787778888999999999997553
Done!