BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046701
(187 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|302143864|emb|CBI22725.3| unnamed protein product [Vitis vinifera]
Length = 523
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 117/212 (55%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP+NGPHK SVG+PV +EMAI DENGV Q+AN
Sbjct: 298 RLEEAFGAPVLEAYAMTEATHLMASNPLPENGPHKPGSVGRPVGQEMAILDENGVQQEAN 357
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
V+G++CIR GP V + NNPEANK+AFQFGWF +GDLG+FD L++
Sbjct: 358 VSGEVCIR-GPNVTKGYKNNPEANKSAFQFGWFHTGDLGFFDPDGYLHLVGRIKELINRG 416
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V FCK+N
Sbjct: 417 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSDIDEAEVTRFCKKN 476
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVFI DSL K TGKIQRRIVAE
Sbjct: 477 LAAFKVPKKVFITDSLP-KTATGKIQRRIVAE 507
>gi|225470747|ref|XP_002267459.1| PREDICTED: putative peroxisomal-coenzyme A synthetase-like [Vitis
vinifera]
Length = 524
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 117/212 (55%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP+NGPHK SVG+PV +EMAI DENGV Q+AN
Sbjct: 299 RLEEAFGAPVLEAYAMTEATHLMASNPLPENGPHKPGSVGRPVGQEMAILDENGVQQEAN 358
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
V+G++CIR GP V + NNPEANK+AFQFGWF +GDLG+FD L++
Sbjct: 359 VSGEVCIR-GPNVTKGYKNNPEANKSAFQFGWFHTGDLGFFDPDGYLHLVGRIKELINRG 417
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V FCK+N
Sbjct: 418 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSDIDEAEVTRFCKKN 477
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVFI DSL K TGKIQRRIVAE
Sbjct: 478 LAAFKVPKKVFITDSLP-KTATGKIQRRIVAE 508
>gi|255539437|ref|XP_002510783.1| AMP dependent CoA ligase, putative [Ricinus communis]
gi|223549898|gb|EEF51385.1| AMP dependent CoA ligase, putative [Ricinus communis]
Length = 521
Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 116/212 (54%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GPHKA SVGKPV +EMAI DENGV QKAN
Sbjct: 296 RLEENFGAPVLEAYAMTEATHLMSSNPLPEDGPHKAGSVGKPVGQEMAILDENGVAQKAN 355
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
+G++CIR GP V + NNPEANK AFQFGWF +GDLGY +S L++
Sbjct: 356 ASGEVCIR-GPNVTKGYKNNPEANKAAFQFGWFHTGDLGYLNSDGYLHLVGRIKELINRG 414
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V +CK+N
Sbjct: 415 GEKISPIEVDAVLLSHPEIAQAVAFGVPDDKYGEEINCAIIPRDGSNIDEAEVLRYCKKN 474
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVFI D+L K +GKIQRRIVAE
Sbjct: 475 LAAFKVPKKVFITDTLP-KTASGKIQRRIVAE 505
>gi|224137016|ref|XP_002322473.1| acyl:coa ligase [Populus trichocarpa]
gi|222869469|gb|EEF06600.1| acyl:coa ligase [Populus trichocarpa]
Length = 524
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 107/185 (57%), Gaps = 57/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP++GPHKA SVGKPV +EMAI +ENGV Q ANV+G++C+R GP V + +NPEANK A
Sbjct: 326 LPEDGPHKAGSVGKPVGQEMAILNENGVIQDANVSGEVCLR-GPNVTKGYKHNPEANKVA 384
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA---------------- 144
FQFGWF +GDLGYFDS L++ KISP EVDA
Sbjct: 385 FQFGWFHTGDLGYFDSDGYLHLVGRIKELINRGGEKISPVEVDAVLLSHPDIAQAVAFGV 444
Query: 145 -------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
V FCK+N+A+FKVPKKVF+ DSL + +GKIQR
Sbjct: 445 PDDKYGEEINCAIIPRDGTDIDEEEVLRFCKKNLAAFKVPKKVFLTDSLP-ETASGKIQR 503
Query: 180 RIVAE 184
RIV+E
Sbjct: 504 RIVSE 508
>gi|399630432|gb|AFP49809.1| 4-hydroxycinnamoyl-CoA ligase 2 [Coffea arabica]
Length = 529
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 111/212 (52%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GPH SVGKPV +EMAI DENG Q+AN
Sbjct: 304 RLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHVPGSVGKPVGQEMAILDENGKPQEAN 363
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
NG++CIR GP V + NNPEANK+AFQFGWF +GDLGY DS L++
Sbjct: 364 ANGEVCIR-GPNVTKGYKNNPEANKSAFQFGWFHTGDLGYLDSDGYLHLVGRIKELINRG 422
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V CK N
Sbjct: 423 GEKISPIEVDAVLLSHPDVAQAVAFGVPDDKYGEEINCAVIPREGANIDESEVSRHCKTN 482
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A FKVPKKVFI DSL K +GKIQRRIVAE
Sbjct: 483 LAGFKVPKKVFITDSLP-KTASGKIQRRIVAE 513
>gi|380042376|gb|AFD33352.1| acyl-activating enzyme 8 [Cannabis sativa]
Length = 526
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 112/212 (52%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++G HK SVGKPV +EMAI D+NG Q A
Sbjct: 301 RLEESFGAPVLEAYAMTEAAHLMASNPLPEDGGHKPGSVGKPVGQEMAILDQNGSAQLAG 360
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
V+G++CIR GP V + NNPEANK AFQFGWF +GD+GYFD L++
Sbjct: 361 VSGEVCIR-GPNVTKGYKNNPEANKAAFQFGWFHTGDVGYFDEDGYLHLVGRIKELINRG 419
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V FCK+N
Sbjct: 420 GEKISPIEVDAVLLSHPDISHAVAFGVPDDKYGEEINCAVIPREGSEVDEDVVLRFCKKN 479
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVFI DSL K TGKIQRRIVAE
Sbjct: 480 LATFKVPKKVFITDSLP-KTATGKIQRRIVAE 510
>gi|225426389|ref|XP_002272145.1| PREDICTED: putative peroxisomal-coenzyme A synthetase [Vitis
vinifera]
gi|297742535|emb|CBI34684.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 113/212 (53%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP+NG HK SVGKPV +EMAI DENGV Q+ N
Sbjct: 300 RLEESFGAPVLEAYAMTEATHLMASNPLPENGEHKPGSVGKPVGQEMAILDENGVLQQPN 359
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
V+G++CIR GP V + NNPEANK AF FGWF +GD+G+ DS L++
Sbjct: 360 VSGEVCIR-GPNVTKGYKNNPEANKAAFSFGWFHTGDVGFLDSDGYLHLVGRIKELINRG 418
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V FCK+N
Sbjct: 419 GEKISPIEVDAVLLSHPDVAQGVAFGVPDDKYGEEINCAIIPREGSDLDESEVLRFCKKN 478
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVF+ D+L K TGKIQRR+VAE
Sbjct: 479 LATFKVPKKVFMTDTLP-KTATGKIQRRLVAE 509
>gi|255537431|ref|XP_002509782.1| AMP dependent CoA ligase, putative [Ricinus communis]
gi|223549681|gb|EEF51169.1| AMP dependent CoA ligase, putative [Ricinus communis]
Length = 522
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 112/211 (53%), Gaps = 62/211 (29%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++G HKA SVG+PV +EMA+ DENGV Q
Sbjct: 297 RLEEAFGAPVLEAYAMTEASHLMASNPLPEDGGHKAGSVGRPVGQEMAVLDENGVVQPVG 356
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------ 134
V+G++CIR + + NNPEANK+AFQFGWF +GD+G+FDS L++
Sbjct: 357 VSGEVCIRGANVTKGYKNNPEANKSAFQFGWFHTGDVGFFDSDGYLHLVGRIKELINRGG 416
Query: 135 WKISPTEVDA-----------------------------------------VKEFCKRNV 153
KISP EVDA V +CK+N+
Sbjct: 417 EKISPIEVDAVLLSHPDVAQAVAFGVPDDKYGEEINCAIIPREDSDTDEADVLRYCKKNL 476
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
ASFKVPKKVFI D L K TGKIQRRIVAE
Sbjct: 477 ASFKVPKKVFITDYLP-KTATGKIQRRIVAE 506
>gi|297819514|ref|XP_002877640.1| AMP-dependent synthetase and ligase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297323478|gb|EFH53899.1| AMP-dependent synthetase and ligase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 514
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 111/212 (52%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP+ GPHK SVGKPV +EMAI +E G Q+ N
Sbjct: 299 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPN 358
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
G++CIR GP V + NNPEANK F+FGWF +GD+GYFDS L++
Sbjct: 359 NKGEVCIR-GPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDSDGYLHLVGRIKELINRG 417
Query: 135 -WKISPTEVDAV-----------------------------------------KEFCKRN 152
KISP EVDAV K FCK+N
Sbjct: 418 GEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFCKKN 477
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVFI D+L K +GKIQRRIVA+
Sbjct: 478 LAAFKVPKKVFITDNLP-KTASGKIQRRIVAQ 508
>gi|449469351|ref|XP_004152384.1| PREDICTED: 4-coumarate--CoA ligase-like 10-like [Cucumis sativus]
Length = 518
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 101/183 (55%), Gaps = 55/183 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAF 113
LP+NGPHKA SVGKPV +EM I DENG+ Q+ANV G++CI+ + + +NP AN+ AF
Sbjct: 329 LPENGPHKAGSVGKPVGQEMVILDENGIVQEANVKGEVCIKGSNVTKGYKSNPVANEEAF 388
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----------------- 144
++GWF +GD+GYFDS L++ KISP EVDA
Sbjct: 389 RYGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLAHPDVAQAVAFGVP 448
Query: 145 ------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
V FCK N+A+FKVPKKVF+ DSL K +GKIQRR
Sbjct: 449 DDKYGEEINCAIIPREGSKIGEEDVMSFCKNNLAAFKVPKKVFLTDSLP-KTASGKIQRR 507
Query: 181 IVA 183
IVA
Sbjct: 508 IVA 510
>gi|449488648|ref|XP_004158128.1| PREDICTED: 4-coumarate--CoA ligase-like 10-like [Cucumis sativus]
Length = 518
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 101/183 (55%), Gaps = 55/183 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAF 113
LP+NGPHKA SVGKPV +EM I DENG+ Q+ANV G++CI+ + + +NP AN+ AF
Sbjct: 329 LPENGPHKAGSVGKPVGQEMVILDENGIVQEANVKGEVCIKGSNVTKGYKSNPVANEEAF 388
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----------------- 144
++GWF +GD+GYFDS L++ KISP EVDA
Sbjct: 389 RYGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLAHPDVAQAVAFGVP 448
Query: 145 ------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
V FCK N+A+FKVPKKVF+ DSL K +GKIQRR
Sbjct: 449 DDKYGEEINCAIIPREGSKIGEEDVMSFCKNNLAAFKVPKKVFLTDSLP-KTASGKIQRR 507
Query: 181 IVA 183
IVA
Sbjct: 508 IVA 510
>gi|224053925|ref|XP_002298041.1| predicted protein [Populus trichocarpa]
gi|222845299|gb|EEE82846.1| predicted protein [Populus trichocarpa]
Length = 522
Score = 135 bits (339), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 111/212 (52%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GPHK SVG+P+ +EMAI +ENGV Q
Sbjct: 297 RLEEAFGAPVLEAYAMTEAAHLMASNPLPEDGPHKPGSVGRPIGQEMAILNENGVVQPVG 356
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
V+G++CIR GP V + NNPE NK AFQFGWF +GD+G+ D L++
Sbjct: 357 VSGEVCIR-GPNVTKGYENNPEGNKAAFQFGWFHTGDVGFLDEDGFLHLVGRIKELINRG 415
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V FCK+N
Sbjct: 416 GEKISPIEVDAVLLSHPDIAQAVAFGVPDEKYGEEINCAIIPRKGSNIDEDEVLSFCKKN 475
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVFI DSL K TGKIQRR+VAE
Sbjct: 476 LATFKVPKKVFITDSLP-KTATGKIQRRLVAE 506
>gi|449452338|ref|XP_004143916.1| PREDICTED: 4-coumarate--CoA ligase-like 10-like [Cucumis sativus]
gi|449495827|ref|XP_004159956.1| PREDICTED: 4-coumarate--CoA ligase-like 10-like [Cucumis sativus]
Length = 513
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 100/185 (54%), Gaps = 57/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP++G HKA SVGKP+ +EMAI DENG Q V G++CIR GP V + NNP+AN +A
Sbjct: 324 LPEDGVHKAGSVGKPIGQEMAILDENGAIQSEGVKGEVCIR-GPNVTKGYKNNPDANNSA 382
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA---------------- 144
F FGWF +GD+G+FDS L++ KISP EVDA
Sbjct: 383 FMFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHTDVSQAVAFGV 442
Query: 145 -------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
V +FCK+N+ASFKVPKKVFI D L K +GKIQR
Sbjct: 443 PDNKYGEEINCAIIPREGSSINEADVLQFCKKNLASFKVPKKVFITDYLP-KTASGKIQR 501
Query: 180 RIVAE 184
R VAE
Sbjct: 502 RFVAE 506
>gi|15229062|ref|NP_190468.1| AMP-dependent synthetase and ligase-like protein [Arabidopsis
thaliana]
gi|75313630|sp|Q9SMT7.1|4CLLA_ARATH RecName: Full=4-coumarate--CoA ligase-like 10; AltName:
Full=4-coumarate--CoA ligase isoform 8; Short=At4CL8;
AltName: Full=Adenosine monophosphate binding protein 3;
Short=AtMPBP3
gi|20799715|gb|AAM28620.1|AF503762_1 adenosine monophosphate binding protein 3 AMPBP3 [Arabidopsis
thaliana]
gi|6522567|emb|CAB62011.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana]
gi|15292781|gb|AAK92759.1| putative 4-coumarate-CoA ligase [Arabidopsis thaliana]
gi|17065366|gb|AAL32837.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana]
gi|21436319|gb|AAM51329.1| putative 4-coumarate-CoA ligase [Arabidopsis thaliana]
gi|28059248|gb|AAO30039.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana]
gi|332644959|gb|AEE78480.1| AMP-dependent synthetase and ligase-like protein [Arabidopsis
thaliana]
Length = 514
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 111/212 (52%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP+ GPHK SVGKPV +EMAI +E G Q+ N
Sbjct: 299 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPN 358
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
G++CIR GP V + NNPEANK F+FGWF +GD+GYFD+ L++
Sbjct: 359 NKGEVCIR-GPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRG 417
Query: 135 -WKISPTEVDAV-----------------------------------------KEFCKRN 152
KISP EVDAV K FCK+N
Sbjct: 418 GEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFCKKN 477
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPK+VFI D+L K +GKIQRRIVA+
Sbjct: 478 LAAFKVPKRVFITDNLP-KTASGKIQRRIVAQ 508
>gi|21593705|gb|AAM65672.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana]
Length = 514
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 111/212 (52%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP+ GPHK SVGKPV +EMAI +E G Q+ N
Sbjct: 299 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPN 358
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
G++CIR GP V + NNPEANK F+FGWF +GD+GYFD+ L++
Sbjct: 359 NKGEVCIR-GPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRG 417
Query: 135 -WKISPTEVDAV-----------------------------------------KEFCKRN 152
KISP EVDAV K FCK+N
Sbjct: 418 GEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFCKKN 477
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPK+VFI D+L K +GKIQRRIVA+
Sbjct: 478 LAAFKVPKRVFITDNLP-KTASGKIQRRIVAQ 508
>gi|357458549|ref|XP_003599555.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula]
gi|355488603|gb|AES69806.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula]
Length = 515
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 110/211 (52%), Gaps = 62/211 (29%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GPHKA SVGKPV +EMAI DE+G +A+
Sbjct: 300 RLEEAFGAPVLEAYAMTEATHLMCSNPLPEDGPHKAGSVGKPVGQEMAILDESGRVLEAD 359
Query: 88 VNGKMCIR-EGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------ 134
VNG++CI+ E NN EANK+AF FGWF +GD+GYFDS L++
Sbjct: 360 VNGEVCIKGENVTKGYKNNEEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 419
Query: 135 WKISPTEVDA-----------------------------------------VKEFCKRNV 153
KISP EVDA V ++CK N+
Sbjct: 420 EKISPIEVDAVLLGHQDVAQAVAFGVPDQKYGEEIHCAIIPREGSNIDAEEVLKYCKTNL 479
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
SFKVPKKVFI DSL K TGKI RR+VAE
Sbjct: 480 TSFKVPKKVFITDSLP-KTATGKILRRLVAE 509
>gi|395146536|gb|AFN53690.1| acyl CoA ligase [Linum usitatissimum]
Length = 512
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 110/212 (51%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GPHK SVGKPV +EMAI DE+G Q +
Sbjct: 299 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGKPVGQEMAILDESGAIQGPD 358
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
G++CIR GP V + NNP+ANK F FGWF +GD+GYFDS LN+
Sbjct: 359 SKGEVCIR-GPNVTKGYKNNPDANKAGFLFGWFHTGDIGYFDSDGYLNLVGRIKELINRG 417
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V+ FCK+N
Sbjct: 418 GEKISPIEVDAVLLSHPDIAQAVCFGVPDDKYGEEINCAIIPREGSKIDEAEVQSFCKKN 477
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVFI + + K +GKIQRRIVA+
Sbjct: 478 LAAFKVPKKVFITNDVP-KTASGKIQRRIVAQ 508
>gi|16797908|gb|AAL29212.1|AF354454_1 putative acyl-CoA synthetase [Capsicum annuum]
Length = 523
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 100/185 (54%), Gaps = 57/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP++GPH SVGKPV +EM I +ENG Q N G++CIR GP V + NNPEANK+A
Sbjct: 325 LPEDGPHIPGSVGKPVGQEMGILNENGELQGPNAKGEVCIR-GPNVTKGYKNNPEANKSA 383
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA---------------- 144
FQFGWF +GD+GY DS L++ KISP E+DA
Sbjct: 384 FQFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIELDAVLVSHPEIAQAVAFGV 443
Query: 145 -------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
V FCK+N+A+FKVPKKVF+ DSL K +GKIQR
Sbjct: 444 PDDKYGEEINCAVIPREGSNIDEAEVLRFCKKNLAAFKVPKKVFMTDSLP-KTASGKIQR 502
Query: 180 RIVAE 184
R+VAE
Sbjct: 503 RLVAE 507
>gi|356574491|ref|XP_003555380.1| PREDICTED: LOW QUALITY PROTEIN: putative peroxisomal-coenzyme A
synthetase-like [Glycine max]
Length = 564
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 111/212 (52%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GPH+A SVGKPV +EM I +ENG QK
Sbjct: 349 RLEEAFGAPVLEAYAMTEASHLMSSNPLPEDGPHRAGSVGKPVGQEMVILNENGEIQKNE 408
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
V G++CIR GP V + NNP+AN +AFQFGWF +GD+G+FDS L++
Sbjct: 409 VKGEVCIR-GPNVTKGYKNNPDANDSAFQFGWFHTGDIGFFDSDGYLHLVGRIKELINRG 467
Query: 135 -WKISPTEVDA-----------------------------------------VKEFCKRN 152
KISP EVDA V+ F K+N
Sbjct: 468 GEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEAEVQRFSKKN 527
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPKKVF DSL K TGKI RR+VAE
Sbjct: 528 LAAFKVPKKVFFTDSLP-KTATGKILRRLVAE 558
>gi|356530866|ref|XP_003534000.1| PREDICTED: putative peroxisomal-coenzyme A synthetase-like [Glycine
max]
Length = 518
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 98/185 (52%), Gaps = 57/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP++GPHKA SVGKPV +EM I DE G Q A V+G++CIR GP V + NN +AN A
Sbjct: 330 LPQDGPHKAGSVGKPVGQEMVILDETGRVQDAEVSGEVCIR-GPNVTKGYKNNVDANTAA 388
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV--------------- 145
F FGWF +GD+GY DS L++ KISP EVDAV
Sbjct: 389 FLFGWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGV 448
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+CK+N+ASFKVPKKVFI DSL K TGKI R
Sbjct: 449 PDPKYGEEIYCAVIPREGSDIDDAELLRYCKKNLASFKVPKKVFITDSLP-KTATGKILR 507
Query: 180 RIVAE 184
R+VAE
Sbjct: 508 RLVAE 512
>gi|148906458|gb|ABR16382.1| unknown [Picea sitchensis]
Length = 536
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 99/185 (53%), Gaps = 57/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP G HK+ SVGK V +E+AI D +GV QK +G++CIR G V + NNPEANKTA
Sbjct: 338 LPHRGVHKSGSVGKAVGQELAILDHSGVIQKPGCSGEVCIR-GLNVTKGYQNNPEANKTA 396
Query: 113 FQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--------------- 145
F+FGWF +GDLGY D+ L + KISP EVDAV
Sbjct: 397 FKFGWFHTGDLGYLDNDGYLFLIGRIKELINRGGEKISPMEVDAVLLLHPAVAEAVAFAV 456
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ FCK+N+ASFK+PK+VFI +S+ K TGK+QR
Sbjct: 457 PDEKYGEEINAAVVTKEGATVTESEIRGFCKKNLASFKIPKRVFITESIP-KTATGKVQR 515
Query: 180 RIVAE 184
R+VAE
Sbjct: 516 RLVAE 520
>gi|56713950|gb|AAW23965.1| putative 4-coumarate-CoA ligase [Solanum chilense]
Length = 191
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 95/179 (53%), Gaps = 57/179 (31%)
Query: 58 NGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF 115
+GPH SVGKPV +EMAI +ENGV Q N G++CIR GP + NNPEANK+AFQF
Sbjct: 15 DGPHIPGSVGKPVGQEMAILNENGVLQGPNAKGEVCIR-GPNGTKGYKNNPEANKSAFQF 73
Query: 116 GWFLSGDLGYFDSQRCLNM------------WKISPTEVDA------------------- 144
GWF +GD+GY DS L++ KISP EVDA
Sbjct: 74 GWFHTGDVGYLDSDGYLHLVGRIKELINRGGEKISPIEVDAVLVSHPEIAQAVAFGVPDD 133
Query: 145 ----------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRI 181
V FCK+N+A+FKVPKKVF+ DSL K +GKIQRR+
Sbjct: 134 KYGEEINCAVIPREGSNIDEAEVMRFCKKNLAAFKVPKKVFMTDSLP-KTASGKIQRRL 191
>gi|356539708|ref|XP_003538337.1| PREDICTED: LOW QUALITY PROTEIN: putative peroxisomal-coenzyme A
synthetase-like [Glycine max]
Length = 523
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 94/184 (51%), Gaps = 55/184 (29%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAF 113
LP++G HK+ SVGKPV +EM I DE+G Q+A ++G++CIR + + NN AN +F
Sbjct: 335 LPQDGAHKSGSVGKPVGQEMGILDESGRVQEAGISGEVCIRGSNVTKGYKNNVAANTASF 394
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAVK--------------- 146
F WF +GD+GYFDS L++ KISP EVDAV
Sbjct: 395 LFDWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVXLSHPEIAQAVAFGVP 454
Query: 147 --------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
F K N+ASFKVPKKVFI DSL K TGKI RR
Sbjct: 455 DAKYGEEIYCAVIPREGSNVDEAEVLRFSKTNLASFKVPKKVFITDSLP-KTATGKILRR 513
Query: 181 IVAE 184
+VAE
Sbjct: 514 LVAE 517
>gi|116743285|emb|CAJ41420.1| 4-coumarate-CoA ligase-like protein [Coffea arabica]
Length = 353
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 82/132 (62%), Gaps = 22/132 (16%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GPH SVGKPV +EMAI DENG Q+AN
Sbjct: 206 RLEEAFGAPVLEAYAMTEASHLMASNPLPQDGPHVPGSVGKPVGQEMAILDENGKPQEAN 265
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
NG++CIR GP V + NNPEANK+AFQFGWF +GDLGY DS L++
Sbjct: 266 ANGEVCIR-GPNVTKGYKNNPEANKSAFQFGWFHTGDLGYLDSDGYLHLVGRIKELINRG 324
Query: 135 -WKISPTEVDAV 145
KISP EVDAV
Sbjct: 325 GEKISPIEVDAV 336
>gi|302771143|ref|XP_002968990.1| hypothetical protein SELMODRAFT_170181 [Selaginella moellendorffii]
gi|300163495|gb|EFJ30106.1| hypothetical protein SELMODRAFT_170181 [Selaginella moellendorffii]
Length = 531
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 91/185 (49%), Gaps = 57/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP +GPHK +VGKP E+AI D+NG Q+ G++CIR GP V +NPEANKTA
Sbjct: 340 LPSHGPHKPGTVGKPTGIELAILDDNGEKQEKTKQGEVCIR-GPNVTTGYKDNPEANKTA 398
Query: 113 FQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--------------- 145
F FGWF +GD G+ D + + KISP EVDAV
Sbjct: 399 FAFGWFHTGDRGFLDEDGYVTLTGRIKELINQGGEKISPLEVDAVLLAHPAVSEAVAFAA 458
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
FCK+N+A FK+P++ F AD L + TGKIQR
Sbjct: 459 PDEKYGEVVNAAVVLHKGESATEQDILAFCKKNLAQFKLPRRTFFADELP-RTATGKIQR 517
Query: 180 RIVAE 184
RIVAE
Sbjct: 518 RIVAE 522
>gi|302817957|ref|XP_002990653.1| hypothetical protein SELMODRAFT_272150 [Selaginella moellendorffii]
gi|300141575|gb|EFJ08285.1| hypothetical protein SELMODRAFT_272150 [Selaginella moellendorffii]
Length = 531
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 91/185 (49%), Gaps = 57/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP +GPHK +VGKP E+AI D+NG Q+ G++CIR GP V +NPEANKTA
Sbjct: 340 LPSHGPHKPGTVGKPTGIELAILDDNGEKQEKTKQGEVCIR-GPNVTTGYKDNPEANKTA 398
Query: 113 FQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--------------- 145
F FGWF +GD G+ D + + KISP EVDAV
Sbjct: 399 FAFGWFHTGDRGFLDEDGYVTLTGRIKELINQGGEKISPLEVDAVLLAHPAVSEAVAFAA 458
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
FCK+N+A FK+P++ F AD L + TGKIQR
Sbjct: 459 PDEKYGEVVNAAVVLHKGESATEQDILAFCKKNLAQFKLPRRTFFADELP-RTATGKIQR 517
Query: 180 RIVAE 184
RIVAE
Sbjct: 518 RIVAE 522
>gi|115461408|ref|NP_001054304.1| Os04g0683700 [Oryza sativa Japonica Group]
gi|32488701|emb|CAE03444.1| OSJNBa0088H09.2 [Oryza sativa Japonica Group]
gi|90399214|emb|CAH68285.1| H0306F12.7 [Oryza sativa Indica Group]
gi|113565875|dbj|BAF16218.1| Os04g0683700 [Oryza sativa Japonica Group]
gi|125550279|gb|EAY96101.1| hypothetical protein OsI_17978 [Oryza sativa Indica Group]
Length = 518
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 93/184 (50%), Gaps = 55/184 (29%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAF 113
LP++G KA SVG+ V +EMAI DE G +A +G++C+R + NPEAN+ AF
Sbjct: 325 LPEDGARKAGSVGRAVGQEMAILDEEGRRVEAGKSGEVCVRGANVTSGYKGNPEANEAAF 384
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----------------- 144
+FGWF +GD+G D + L + KISP EVD+
Sbjct: 385 RFGWFHTGDIGVVDEEGYLRLVGRIKELINRGGEKISPIEVDSVLLGHPAIAQAVAFGVP 444
Query: 145 ------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
V +C+RN+A+FKVPKKV+IAD L K TGKIQRR
Sbjct: 445 DAKYGEEINCAVIPREGVSLGEEEVLAYCRRNLAAFKVPKKVYIADELP-KTATGKIQRR 503
Query: 181 IVAE 184
IVA+
Sbjct: 504 IVAQ 507
>gi|222629800|gb|EEE61932.1| hypothetical protein OsJ_16676 [Oryza sativa Japonica Group]
Length = 271
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 100/206 (48%), Gaps = 60/206 (29%)
Query: 38 FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
FG V A ++ L LP++G KA SVG+ V +EMAI DE G +A +G++
Sbjct: 56 FGAPVVEAYAMTEASHLMTSNPLPEDGARKAGSVGRAVGQEMAILDEEGRRVEAGKSGEV 115
Query: 93 CIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISP 139
C+R + NPEAN+ AF+FGWF +GD+G D + L + KISP
Sbjct: 116 CVRGANVTSGYKGNPEANEAAFRFGWFHTGDIGVVDEEGYLRLVGRIKELINRGGEKISP 175
Query: 140 TEVDA-----------------------------------------VKEFCKRNVASFKV 158
EVD+ V +C+RN+A+FKV
Sbjct: 176 IEVDSVLLGHPAIAQAVAFGVPDAKYGEEINCAVIPREGVSLGEEEVLAYCRRNLAAFKV 235
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAE 184
PKKV+IAD L K TGKIQRRIVA+
Sbjct: 236 PKKVYIADELP-KTATGKIQRRIVAQ 260
>gi|413951624|gb|AFW84273.1| putative AMP-dependent synthetase and ligase superfamily protein
[Zea mays]
Length = 503
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 99/213 (46%), Gaps = 64/213 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GP K SVG+ V +E+A+ DE G A
Sbjct: 284 RLEAAFGASVLEAYAMTEASHLMTSNPLPEDGPRKPGSVGRAVGQELAVLDEEGRLVAAG 343
Query: 88 VNGKMCIR-EGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------ 134
G++C+R + NPEAN+ AF+FGWF +GD+G D Q + +
Sbjct: 344 SPGEVCVRGDNVTAGYKGNPEANEAAFRFGWFHTGDIGVVDDQGYVRLVGRIKVKELINR 403
Query: 135 --WKISPTEVDA-----------------------------------------VKEFCKR 151
KISP EVDA V C+R
Sbjct: 404 GGEKISPIEVDAVLLGLPGVAQAVSFGVPDDKYGEEINCALIPRDGSALREEEVLAHCRR 463
Query: 152 NVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
N+ASFKVPKKVFI D L K TGKIQRRIVA+
Sbjct: 464 NLASFKVPKKVFITDDLP-KTATGKIQRRIVAQ 495
>gi|226504038|ref|NP_001152269.1| LOC100285908 [Zea mays]
gi|195654495|gb|ACG46715.1| peroxisomal-coenzyme A synthetase [Zea mays]
gi|364886420|gb|AEW67745.1| acyl activating enzyme [Zea mays]
Length = 527
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 89/184 (48%), Gaps = 55/184 (29%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP++GP K SVG+ V +E+A+ DE G A G++C+R + NPEAN+ AF
Sbjct: 337 LPEDGPRKPGSVGRAVGQELAVLDEEGRLVAAGSPGEVCVRGDNVTAGYKGNPEANEAAF 396
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----------------- 144
+FGWF +GD+G D Q + + KISP EVDA
Sbjct: 397 RFGWFHTGDIGVVDDQGYVRLVGRIKELINRGGEKISPIEVDAVLLGLPGVAQAVSFGVP 456
Query: 145 ------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
V C+RN+ASFKVPKKVFI D L K TGKIQRR
Sbjct: 457 DDKYGEEINCAVIPRDGSALREEEVLAHCRRNLASFKVPKKVFITDDLP-KTATGKIQRR 515
Query: 181 IVAE 184
IVA+
Sbjct: 516 IVAQ 519
>gi|373228927|gb|AEY64280.1| acyl-CoA-like protein [Zea mays]
Length = 527
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 89/184 (48%), Gaps = 55/184 (29%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP++GP K SVG+ V +E+A+ DE G A G++C+R + NPEAN+ AF
Sbjct: 337 LPEDGPRKPGSVGRAVGQELAVLDEEGRLVAAGSPGEVCVRGDNVTAGYKGNPEANEAAF 396
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----------------- 144
+FGWF +GD+G D Q + + KISP EVDA
Sbjct: 397 RFGWFHTGDIGVVDDQGYVRLVGRIKELINRGGEKISPIEVDAVLLGLPGVAQAVSFGVP 456
Query: 145 ------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
V C+RN+ASFKVPKKVFI D L K TGKIQRR
Sbjct: 457 DDKYGEEINCAVIPRDGSALREEEVLAHCRRNLASFKVPKKVFITDDLP-KTATGKIQRR 515
Query: 181 IVAE 184
IVA+
Sbjct: 516 IVAQ 519
>gi|413920020|gb|AFW59952.1| putative AMP-dependent synthetase and ligase superfamily protein
[Zea mays]
Length = 497
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 89/184 (48%), Gaps = 55/184 (29%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP++GP K SVG+ V +E+A+ DE G A G++C+R + NPEAN+ AF
Sbjct: 307 LPEDGPRKPGSVGRAVGQELAVLDEEGRLVAAGSPGEVCVRGDNVTAGYKGNPEANEAAF 366
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----------------- 144
+FGWF +GD+G D Q + + KISP EVDA
Sbjct: 367 RFGWFHTGDIGVVDDQGYVRLVGRIKELINRGGEKISPIEVDAVLLGLPGVAQAVSFGVP 426
Query: 145 ------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
V C+RN+ASFKVPKKVFI D L K TGKIQRR
Sbjct: 427 DDKYGEEINCAVIPRDGSALREEEVLAHCRRNLASFKVPKKVFITDDLP-KTATGKIQRR 485
Query: 181 IVAE 184
IVA+
Sbjct: 486 IVAQ 489
>gi|357458551|ref|XP_003599556.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula]
gi|355488604|gb|AES69807.1| 2-succinylbenzoate-CoA ligase [Medicago truncatula]
Length = 470
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 90/152 (59%), Gaps = 24/152 (15%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++GPHKA SVGKPV +EMAI DE+G +A+
Sbjct: 300 RLEEAFGAPVLEAYAMTEATHLMCSNPLPEDGPHKAGSVGKPVGQEMAILDESGRVLEAD 359
Query: 88 VNGKMCIR-EGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------ 134
VNG++CI+ E NN EANK+AF FGWF +GD+GYFDS L++
Sbjct: 360 VNGEVCIKGENVTKGYKNNEEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 419
Query: 135 WKISPTEVDAVKEFCKRNVA---SFKVPKKVF 163
KISP EVDAV ++VA +F VP + +
Sbjct: 420 EKISPIEVDAVL-LGHQDVAQAVAFGVPDQKY 450
>gi|242077728|ref|XP_002448800.1| hypothetical protein SORBIDRAFT_06g033410 [Sorghum bicolor]
gi|241939983|gb|EES13128.1| hypothetical protein SORBIDRAFT_06g033410 [Sorghum bicolor]
Length = 513
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 98/211 (46%), Gaps = 62/211 (29%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP++G K SVG+ V +E+A+ DE G A
Sbjct: 296 RLEAAFGAPVLEAYAMTEASHLMTSNPLPEDGARKPGSVGRAVGQELAVLDEEGRRVAAG 355
Query: 88 VNGKMCIR-EGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------ 134
G++CIR + NPEAN+ AF+FGWF +GD+G D + + +
Sbjct: 356 SPGEVCIRGDNVTAGYKGNPEANEAAFRFGWFHTGDIGVVDEEGYVRLVGRIKELINRGG 415
Query: 135 WKISPTEVDA-----------------------------------------VKEFCKRNV 153
KISP EVDA V C+RN+
Sbjct: 416 EKISPIEVDAVLLGAPGVAQAVSFGVPDDKYGEEINCAVIPRDGSALREEEVLAHCRRNL 475
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
ASFKVPKKVFI D L K TGKIQRRIVA+
Sbjct: 476 ASFKVPKKVFITDDLP-KTATGKIQRRIVAQ 505
>gi|364886422|gb|AEW67746.1| acyl activating enzyme [Zea mays]
Length = 523
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 87/184 (47%), Gaps = 59/184 (32%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP++GP K SVG+ E+A+ DE G A G++C+R + NPEAN+ AF
Sbjct: 337 LPEDGPRKPGSVGQ----ELAVLDEEGRLVAAGSPGEVCVRGDNVTAGYKGNPEANEAAF 392
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----------------- 144
+FGWF +GD+G D Q + + KISP EVDA
Sbjct: 393 RFGWFHTGDIGVVDDQGYVRLVGRIKELINRGGEKISPIEVDAVLLGLPGVAQAVSFGVP 452
Query: 145 ------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
V C+RN+ASFKVPKKVFI D L K TGKIQRR
Sbjct: 453 DDKYGEEINCAVIPRDGSALREEEVLAHCRRNLASFKVPKKVFITDDLP-KTATGKIQRR 511
Query: 181 IVAE 184
IVA+
Sbjct: 512 IVAQ 515
>gi|168005746|ref|XP_001755571.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693278|gb|EDQ79631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 515
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 88/185 (47%), Gaps = 57/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP +G HK SVGK E+AI D++G K G++CI+ GP V NNP+AN+ A
Sbjct: 326 LPHHGVHKPGSVGKATGIELAILDDDGSILKPGEIGEICIK-GPNVTSGYKNNPDANQVA 384
Query: 113 FQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK-------------- 146
F F WF +GD G D + L++ KISP E+DAV
Sbjct: 385 FAFDWFHTGDRGKLDEEGYLSLTGRIKELINRGGEKISPLEIDAVLLAHPAVSEAVAFAA 444
Query: 147 ---------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
E CK+N+A FK+PK++F AD L + TGKIQR
Sbjct: 445 PDDHFGEEVNAGIVLNKGTEATAMDIVEHCKKNLAPFKIPKRIFFADELP-RTATGKIQR 503
Query: 180 RIVAE 184
RIVAE
Sbjct: 504 RIVAE 508
>gi|326524582|dbj|BAK00674.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526109|dbj|BAJ93231.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 534
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 87/188 (46%), Gaps = 59/188 (31%)
Query: 55 LPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKT 111
LP++GP K SVG+ E+A+ DE G A+ G++CIR + + +P AN
Sbjct: 335 LPQDGPRKPGSVGRAAGAMEVAVLDEAGNKVPADERGEVCIRGANVTGGYKTADPGANAA 394
Query: 112 AFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA--------------- 144
AF GWF +GD+G D + + + KISP EVD+
Sbjct: 395 AFAHGWFHTGDIGVMDGEGYVRLVGRIKELINRGGEKISPIEVDSVLLGHPDVAQAVSFG 454
Query: 145 ----------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGK 176
V FC++N+A+FKVPKKV+IAD L K TGK
Sbjct: 455 VPDDKYGEEIHCAVIPRGGAAVALGEEEVVAFCRKNLAAFKVPKKVYIADDLP-KTATGK 513
Query: 177 IQRRIVAE 184
IQRRIVA+
Sbjct: 514 IQRRIVAQ 521
>gi|357162735|ref|XP_003579506.1| PREDICTED: putative peroxisomal-coenzyme A synthetase-like
[Brachypodium distachyon]
Length = 543
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 87/191 (45%), Gaps = 62/191 (32%)
Query: 55 LPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR-----EGPMVQRINNPEA 108
LP +G HK SVG P E+AI ++G A G++CIR G + ++ A
Sbjct: 337 LPCDGAHKPGSVGLPAGDMELAILSDSGALLPAGTPGEVCIRGANVTAGYSSRTADSTSA 396
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAVK---------- 146
N AF++GWF +GD+G D L + KISP EVDAV
Sbjct: 397 NAEAFKYGWFHTGDIGVRDPDGYLRLVGRIKELINRGGEKISPIEVDAVLLGCPGVKQAV 456
Query: 147 ---------------------------------EFCKRNVASFKVPKKVFIADSLSGKPL 173
EFC++N+A+FKVPKKVFIAD L K
Sbjct: 457 AFGVPDEKYGEEINCAVILREEEDGKVGEKEVVEFCRKNLAAFKVPKKVFIADDLP-KTA 515
Query: 174 TGKIQRRIVAE 184
TGKIQRR+VA+
Sbjct: 516 TGKIQRRVVAQ 526
>gi|452824570|gb|EME31572.1| acetolactate synthase large subunit [Galdieria sulphuraria]
Length = 1099
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 82/185 (44%), Gaps = 56/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LPKNG K SVGK E+AI +N N G++CIR E +NNP+AN+ AF
Sbjct: 328 LPKNGKRKPGSVGKGQNVEVAILSDNCEILGPNKVGEVCIRGENVTKGYLNNPKANEEAF 387
Query: 114 QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDA----------------- 144
GWF +GD GY D L + KISP EVDA
Sbjct: 388 AGGWFHTGDQGYLDEDGYLTLTGRIKELINRGGEKISPLEVDAALLSHPNVSEAVSFGVS 447
Query: 145 -------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ E CK +ASFKVPKK++I D + +GKIQR
Sbjct: 448 DEKYGEEVEAAVILKDKSRGTTEKDITEDCKSRIASFKVPKKIYIVDDFP-RTGSGKIQR 506
Query: 180 RIVAE 184
RIVA+
Sbjct: 507 RIVAQ 511
>gi|387220081|gb|AFJ69749.1| hypothetical protein NGATSA_3047400 [Nannochloropsis gaditana
CCMP526]
Length = 348
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 86/186 (46%), Gaps = 58/186 (31%)
Query: 55 LPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKT 111
LPK+GP K SVGK ++AI D+N G++CI +GP V +NN EAN+
Sbjct: 160 LPKHGPRKPGSVGKATGTVKVAILDDNCQPVPTGKVGEVCI-QGPSVTPGYVNNEEANRV 218
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK------------- 146
F GWF +GD G+ D + L + KISP EVDAV
Sbjct: 219 GFMGGWFHTGDQGFLDEEDYLTLTGRIKELINRGGEKISPLEVDAVLLSHPLVGEAVSFA 278
Query: 147 ----------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
+ C+ ++A FK+PKKV+IA ++ + TGKIQ
Sbjct: 279 APDEKYGEEVHAVVTLKPGSSLSEEAIVQHCRLSLADFKLPKKVYIAQTVP-RTATGKIQ 337
Query: 179 RRIVAE 184
RRIVAE
Sbjct: 338 RRIVAE 343
>gi|281205144|gb|EFA79337.1| AMP-dependent synthetase and ligase domain-containing protein
[Polysphondylium pallidum PN500]
Length = 534
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 56/186 (30%)
Query: 54 LLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTA 112
LLP++G KA SVG+ ++ + D+NG + G++C++ E M NNP+AN
Sbjct: 336 LLPEDGKRKAGSVGRASFVDVGVADDNGDLLEQGKVGEVCVKGENIMKGYNNNPQANIDN 395
Query: 113 F-QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD---------------- 143
F + GWFL+GD+GY D L + KISP EVD
Sbjct: 396 FTKHGWFLTGDIGYLDEDGFLILKGRKKEIINRGGEKISPLEVDNALLENSAIAEAVCFG 455
Query: 144 -------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
+ EF ++ + SFK+PKK+F+ +S K TGKIQ
Sbjct: 456 VPDAKYGEEIWAAVVPKPDHNLTEQDIMEFLQKKIVSFKIPKKIFVTNSFP-KTSTGKIQ 514
Query: 179 RRIVAE 184
RR ++E
Sbjct: 515 RRFISE 520
>gi|66815367|ref|XP_641700.1| AMP-dependent synthetase and ligase domain-containing protein
[Dictyostelium discoideum AX4]
gi|60469731|gb|EAL67719.1| AMP-dependent synthetase and ligase domain-containing protein
[Dictyostelium discoideum AX4]
Length = 542
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 56/186 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP++GP K SVGK +++I ++NG QK G++CI+ + M NNP+AN F
Sbjct: 351 LPQDGPRKPGSVGKGFNVQISIVNDNGEHQKQGDVGEVCIKGKNVMHGYHNNPQANIDNF 410
Query: 114 -QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD----------------- 143
+ GWFL+GD+GY D L + KISP EVD
Sbjct: 411 TKDGWFLTGDIGYLDQDGYLILKGRKKEIINRGGEKISPLEVDNALLENDKILEAVCFGV 470
Query: 144 ------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ +F ++ + SFKVPKK+ I D+ K +GKIQR
Sbjct: 471 PDEKYGEEIWAAVIPKVPQSITVEEITQFLQKKLISFKVPKKIIITDNFP-KTASGKIQR 529
Query: 180 RIVAEL 185
R +A+
Sbjct: 530 RFIADF 535
>gi|148906535|gb|ABR16420.1| unknown [Picea sitchensis]
Length = 455
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAF 113
LP G K SSVGK E+AI +E+GV Q G++CIR + NNPEAN+TAF
Sbjct: 355 LPHRGRRKPSSVGKATGIELAILNESGVVQSQGCTGEVCIRGVNVTNGYQNNPEANETAF 414
Query: 114 QFGWFLSGDLGYFDSQRCL 132
QFGWF +GDLGY D + L
Sbjct: 415 QFGWFHTGDLGYLDDESYL 433
>gi|315259981|gb|ADT92188.1| peroxisomal-CoA synthetase [Zea mays]
Length = 419
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 78/172 (45%), Gaps = 56/172 (32%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP++GP K SVG+ V +E+A+ DE G A G++C+R + NPEAN+ AF
Sbjct: 254 LPEDGPRKPGSVGRAVGQELAVLDEEGRLVAAGSPGEVCVRGDNVTAGYKGNPEANEAAF 313
Query: 114 QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK--------------------------- 146
+ G+ KISP EVDAV
Sbjct: 314 RELINRGGE-------------KISPIEVDAVLLGLPGVAQAVSFGVPDDKYGEEINCAV 360
Query: 147 --------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
C+RN+ASFKVPKKVFI D L K TGKIQRRIVA+
Sbjct: 361 IPRDGSALREEEVLAHCRRNLASFKVPKKVFITDDLP-KTATGKIQRRIVAQ 411
>gi|384246791|gb|EIE20280.1| acetyl-CoA synthetase-like protein [Coccomyxa subellipsoidea C-169]
Length = 550
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 80/185 (43%), Gaps = 61/185 (32%)
Query: 55 LPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKT 111
LPKNGPHKA +VG+ ++ I D+ G++CI GP V + INNP AN+
Sbjct: 331 LPKNGPHKAGTVGRAQGSVQVTILDDQNRQLPVGQIGEVCIL-GPNVTKGYINNPNANQE 389
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDA--------------- 144
A+ GWF +GD G+ D L + KISP EVD+
Sbjct: 390 AYAGGWFHTGDQGFLDEDGFLTLTGRLKELINRGGEKISPLEVDSALLGHPLVNEAVSFG 449
Query: 145 -----------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTG 175
+++F +A FKVP+++FI D L K TG
Sbjct: 450 APDEKYGEVVAAGVVLSKPADDEAAVIADIRKFAATKLAKFKVPEQIFITDKLP-KGATG 508
Query: 176 KIQRR 180
KIQRR
Sbjct: 509 KIQRR 513
>gi|307104766|gb|EFN53018.1| hypothetical protein CHLNCDRAFT_48296 [Chlorella variabilis]
Length = 530
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 84/189 (44%), Gaps = 61/189 (32%)
Query: 55 LPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKT 111
LPK+GP K +VGKP ++AI DE A G++CIR GP V + ++NP+AN+
Sbjct: 332 LPKHGPRKPGTVGKPQGSVQVAILDEGCSVLPAGQVGEVCIR-GPNVTKGYLDNPKANEE 390
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDA--------------- 144
AF GWF +GD G D + L + KISP EVD+
Sbjct: 391 AFAGGWFHTGDQGMLDEEGYLTLTGRLKELINRGGEKISPIEVDSALLAHPGVAEAVSFA 450
Query: 145 -----------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTG 175
+K + +++FKVP +VF+ ++L P TG
Sbjct: 451 APDEKYGEVVAAAVVLTEEGKQMADIEEDIKRVVGQRLSAFKVPTRVFVTEALPKGP-TG 509
Query: 176 KIQRRIVAE 184
KI RR + +
Sbjct: 510 KISRRFMVD 518
>gi|309790281|ref|ZP_07684849.1| AMP-dependent synthetase and ligase [Oscillochloris trichoides
DG-6]
gi|308227669|gb|EFO81329.1| AMP-dependent synthetase and ligase [Oscillochloris trichoides DG6]
Length = 503
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 63/215 (29%)
Query: 32 LPP----RLE--FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENG 81
LPP RLE FG V + + + N P KA SVG + ++AI D G
Sbjct: 284 LPPVVMERLEATFGAPVLESYGMTEASHQMASNPLPPAPRKAGSVGVGIGVDVAIMDAEG 343
Query: 82 VDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW----- 135
G++ +R G +V NNPEAN AF GWF +GD GY D+ L++
Sbjct: 344 HMLPVGERGEVVVRGGNVVDGYENNPEANANAFTHGWFRTGDQGYLDNAGYLHLTGRIKE 403
Query: 136 -------KISPTEVDAV---------------------------------------KEFC 149
KISP E+D V +E C
Sbjct: 404 LINRGGEKISPLEIDDVLLRHPAVAEALAFAVPHPTLGEDVHAAVVLNTPVSEKELREHC 463
Query: 150 KRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
R++A FKVP+++ + +SL + TGK+QR +A+
Sbjct: 464 TRSLADFKVPRQIHVLESLP-RGATGKLQRITMAK 497
>gi|440792564|gb|ELR13773.1| Peroxisomalcoenzyme A synthetase [Acanthamoeba castellanii str.
Neff]
Length = 533
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 61/184 (33%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFG 116
G K SVG+ E+ I D++G + G++C+R GP V R NNP+ANKTAF G
Sbjct: 333 GKRKPGSVGQGTGVEVTIRDDSGKELAQGEKGEVCLR-GPTVTRGYHNNPQANKTAFHEG 391
Query: 117 -WFLSGDLGYFDSQRCLNMW------------KISPTEVD-------------------- 143
WF +GD G+FD + L + KI+P+E+D
Sbjct: 392 RWFRTGDQGFFDEDKFLVLTGRIKELINRGGEKIAPSEIDSALLSHPDVSEAVSFGVPSD 451
Query: 144 ------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
A+ + C +A++K P++++IA L + TGKIQR
Sbjct: 452 KYGEEVEAAVVLKGGREGGKAVEEAILKHCHAKLAAYKCPRRLYIAKDLP-RTATGKIQR 510
Query: 180 RIVA 183
R VA
Sbjct: 511 RHVA 514
>gi|407928550|gb|EKG21405.1| AMP-dependent synthetase/ligase [Macrophomina phaseolina MS6]
Length = 515
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 82/185 (44%), Gaps = 56/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP+NGP K SVG E+ I D++G + ++CIR E INNPEANKT+F
Sbjct: 320 LPQNGPRKPGSVGVGQGVEVKILDQDGKEVPQGKEAEICIRGENVTKGYINNPEANKTSF 379
Query: 114 -QFGWFLSGDLGYFDSQ----------RCLNMW--KISPTEVDAV--------------- 145
+ G+F +GD G D + +N KISP E+D V
Sbjct: 380 TKEGFFRTGDQGKVDEEGYVIITGRIKELINKGGEKISPIELDNVLAQHPAISEAVSFAI 439
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
K++ K VA FK+PKKVF D + K TGKIQR
Sbjct: 440 ADEMYGQDVGIAVVLKEGQKLTGDELKDWLKDRVAKFKLPKKVFFTDVMP-KTATGKIQR 498
Query: 180 RIVAE 184
R VA+
Sbjct: 499 RNVAD 503
>gi|384499215|gb|EIE89706.1| hypothetical protein RO3G_14417 [Rhizopus delemar RA 99-880]
Length = 524
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 82/185 (44%), Gaps = 63/185 (34%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAF 113
LP GPHK+ SVG E+AI DE+G Q A + G++CIR + Q +NNPEA +AF
Sbjct: 327 LPHRGPHKSGSVGLGQGVEVAILDEDG--QPAEI-GEVCIRGQNVTQGYLNNPEATASAF 383
Query: 114 -QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--------------- 145
+ G+F +GD G D L + KISP E+D+V
Sbjct: 384 TKDGYFRTGDEGKKDKDGYLVLTGRIKELINRGGEKISPIELDSVLLSHPKVNEAVCFGV 443
Query: 146 ------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTG 175
+ FC+ +A FK+PK++++ + K TG
Sbjct: 444 PDEMYGQEIQAAVVLKPGVKESEKAVERELQAFCQSKLAKFKIPKRIYVTGVMP-KTATG 502
Query: 176 KIQRR 180
KIQRR
Sbjct: 503 KIQRR 507
>gi|359408932|ref|ZP_09201400.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [SAR116
cluster alpha proteobacterium HIMB100]
gi|356675685|gb|EHI48038.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [SAR116
cluster alpha proteobacterium HIMB100]
Length = 498
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 80/205 (39%), Gaps = 59/205 (28%)
Query: 38 FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
FGC V A + + N G KA VG E+ I D G Q G++C
Sbjct: 291 FGCPVIEAYGMTEAAHQMTSNPLGDGRQKAGFVGIATSPEVCILDAEGAPQPQGGEGEVC 350
Query: 94 IREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPT 140
I+ + NNPEAN ++F GWF +GD GYFD L + KISP
Sbjct: 351 IQGDNVTPGYENNPEANASSFTNGWFRTGDQGYFDEDGYLKITGRLKEIINRGGEKISPL 410
Query: 141 EVDAV-----------------------------------------KEFCKRNVASFKVP 159
EVD V K++ +++A FKVP
Sbjct: 411 EVDNVLMDHPAIQQVVTFAVADKLLGEDVGAAVVLVDGASLSEAELKDYANQHLAKFKVP 470
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAE 184
+ + D + K TGK+QR +AE
Sbjct: 471 RHICFVDEIP-KGATGKLQRIGLAE 494
>gi|383455316|ref|YP_005369305.1| long-chain-fatty-acid--CoA ligase [Corallococcus coralloides DSM
2259]
gi|380733187|gb|AFE09189.1| Long-chain-fatty-acid--CoA ligase [Corallococcus coralloides DSM
2259]
Length = 509
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 72/180 (40%), Gaps = 57/180 (31%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGW 117
P A SVG E+AI D+ G G++ IR GP M +NNPEAN AF GW
Sbjct: 326 PRYAGSVGLAAGPEVAIMDDAGALLPPEALGEVVIR-GPNVMSGYVNNPEANARAFTHGW 384
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------------- 145
F +GD G D+Q L + K+SP EVD V
Sbjct: 385 FRTGDQGTLDAQGYLRLTGRLKELINRGGEKVSPLEVDTVLLDHPAVQQAVTFALPHPKL 444
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++F VA FKVP+++ L P TGK+QR +AE
Sbjct: 445 GEDVAAAVILREGHTPTERELRDFVASRVADFKVPRRIVFLTELPKGP-TGKVQRIGLAE 503
>gi|254417134|ref|ZP_05030880.1| AMP-binding enzyme domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176112|gb|EDX71130.1| AMP-binding enzyme domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 639
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 72/181 (39%), Gaps = 57/181 (31%)
Query: 60 PH--KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFG 116
PH K SVG E+ I DE G G++ IR + Q NNP+AN+ AF G
Sbjct: 335 PHVRKPGSVGIAAGPELGIMDETGNLLPLETVGEVVIRGANVTQGYENNPDANEKAFTHG 394
Query: 117 WFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------------- 145
WF +GDLGY D+ + L + KISP EVD V
Sbjct: 395 WFRTGDLGYLDADQYLFLKGRIKEIINRGGEKISPREVDEVLLDHPAIDQVVTFAAPHTL 454
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
KEF +A FKVP+ V D + P TGK QR +A
Sbjct: 455 LGEDVAAAVVLREKASVTEQDIKEFAAERLAEFKVPRVVLFVDEIPKGP-TGKRQRIGLA 513
Query: 184 E 184
E
Sbjct: 514 E 514
>gi|50552936|ref|XP_503878.1| YALI0E12859p [Yarrowia lipolytica]
gi|49649747|emb|CAG79471.1| YALI0E12859p [Yarrowia lipolytica CLIB122]
Length = 583
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 77/181 (42%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G K +VG E+AI D+NG + ++CIR E INNPEANK++F + G
Sbjct: 396 GQRKPGTVGVGQGVEVAILDDNGDEVPQGKIAEICIRGENVTKGYINNPEANKSSFTKSG 455
Query: 117 WFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------- 145
+F +GD G+ D +N+ KISP E+D V
Sbjct: 456 FFRTGDQGFLDKDGFVNITGRIKELINRGGEKISPIELDGVMLEHPAVAEAVCFGAPDEM 515
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K+F VA FK+P +VF D + K TGKIQRR VA
Sbjct: 516 YGQQVNAAIVLKKDAKATEQDIKDFMADKVAKFKIPARVFFTDIMP-KTATGKIQRRFVA 574
Query: 184 E 184
+
Sbjct: 575 Q 575
>gi|163847601|ref|YP_001635645.1| AMP-dependent synthetase and ligase [Chloroflexus aurantiacus
J-10-fl]
gi|222525456|ref|YP_002569927.1| AMP-dependent synthetase and ligase [Chloroflexus sp. Y-400-fl]
gi|163668890|gb|ABY35256.1| AMP-dependent synthetase and ligase [Chloroflexus aurantiacus
J-10-fl]
gi|222449335|gb|ACM53601.1| AMP-dependent synthetase and ligase [Chloroflexus sp. Y-400-fl]
Length = 500
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 75/181 (41%), Gaps = 57/181 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFG 116
G K SVG E+ I DE+G A V G++ +R GP V NNPEAN TAF G
Sbjct: 318 GRRKPGSVGIGFGVEVGIMDEHGQLLPAGVKGEVVVR-GPNVVDGYENNPEANATAFVNG 376
Query: 117 WFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------- 145
WF +GD GY D L + KISP E+D V
Sbjct: 377 WFRTGDQGYLDEDGYLCLTGRIKELINRGGEKISPLEIDDVLLRHPAVAEALAFAVPHPT 436
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
+E C R +A FKVP+ + I +L + TGK+QR +A
Sbjct: 437 LGEEVHAAVVLREGMSADERELREHCARLLADFKVPRAIHILSALP-RGATGKLQRITMA 495
Query: 184 E 184
+
Sbjct: 496 K 496
>gi|334132735|ref|ZP_08506491.1| AMP-binding enzyme domain protein [Methyloversatilis universalis
FAM5]
gi|333442219|gb|EGK70190.1| AMP-binding enzyme domain protein [Methyloversatilis universalis
FAM5]
Length = 603
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 59/206 (28%), Positives = 82/206 (39%), Gaps = 61/206 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
FGC V A + + N P K SVG+P +M I D G +A + G++
Sbjct: 291 FGCPVVEAYGMTEAAHQMASNPLPPQPRKPGSVGRPAGPDMTILDPAGAQLEAGIRGEIA 350
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISP 139
IR GP V R NP+AN++AF WF +GD GYFD L + KI+P
Sbjct: 351 IR-GPNVMRGYHANPDANRSAFSGDWFRTGDEGYFDDDGYLFITGRLKEMINRGGEKITP 409
Query: 140 TEVDAV-----------------------------------------KEFCKRNVASFKV 158
E+D V + +A FKV
Sbjct: 410 REIDEVLLGHPDVAQALAFAVPHATLGEDVAAAVVLRPHAVTDAAGLRAHLFTRLADFKV 469
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAE 184
P ++ + D + K TGK+QR +AE
Sbjct: 470 PSELLLVDEIP-KGATGKMQRIGMAE 494
>gi|307108135|gb|EFN56376.1| hypothetical protein CHLNCDRAFT_144896 [Chlorella variabilis]
Length = 2635
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 16/102 (15%)
Query: 57 KNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAF 113
+ G K +VG PV ++AI D + +Q A G++C+ +GP + +NNPEAN AF
Sbjct: 369 RPGGSKPGTVGLPVAETQLAIMDADMREQPAGQAGEICV-QGPSLTPGYLNNPEANADAF 427
Query: 114 QFGWFLSGDLGYFDSQRCLNM---------W---KISPTEVD 143
+ GWF +GDLG D + CL + W KISPTEVD
Sbjct: 428 RGGWFHTGDLGVKDQEGCLTVLGRVKETISWGGEKISPTEVD 469
>gi|421600980|ref|ZP_16043882.1| acyl-CoA synthetase, partial [Bradyrhizobium sp. CCGE-LA001]
gi|404266912|gb|EJZ31690.1| acyl-CoA synthetase, partial [Bradyrhizobium sp. CCGE-LA001]
Length = 447
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 59/182 (32%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
K S G+ + E+ I DE+G NVNG++C+R GP + R +PE +AF W
Sbjct: 264 EKIGSTGRAIAHVEIDIRDEDGKTLPPNVNGEICLR-GPKITRGYWKDPEKTASAFFGNW 322
Query: 118 FLSGDLGYFDSQRCLNMWK------------ISPTEVD---------------------- 143
F SGD+GY D L + I+ +EV+
Sbjct: 323 FRSGDVGYLDEDGFLYLTDRKKDMIISGGENIASSEVERVIYDLPDVREVAVIGLRDPRW 382
Query: 144 -------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV-A 183
A+ E C+ +ASFKVPK++ I DSL P +GKI +R++ A
Sbjct: 383 GERPVAIVVLAEGASLDLAALTEHCRTRLASFKVPKQLIIRDSLPRNP-SGKILKRLLRA 441
Query: 184 EL 185
EL
Sbjct: 442 EL 443
>gi|149181421|ref|ZP_01859917.1| O-succinylbenzoic acid--CoA ligase [Bacillus sp. SG-1]
gi|148850822|gb|EDL64976.1| O-succinylbenzoic acid--CoA ligase [Bacillus sp. SG-1]
Length = 503
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 55/188 (29%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEA 108
+ L P++ K S GKP+ + NG A+V G++ +R GP V R N EA
Sbjct: 309 IVTLSPEDSLEKLGSAGKPLFPCELMIVHNGQKAGAHVQGEIAVR-GPNVTRGYYNREEA 367
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDA------------ 144
NK +F GWFL+GD+GY D Q L + I P E+++
Sbjct: 368 NKESFMDGWFLTGDIGYQDEQGFLYVLDRRSDLIISGGENIYPAEIESVLVSHPEIAEAG 427
Query: 145 ---------------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
VKEFC+ +A +KVP +V+ ++L + + K+
Sbjct: 428 VVGIESEEWGQVPVAFLVPEIPLETSEVKEFCRTKLAGYKVPHQVYFVENLP-RNASNKL 486
Query: 178 QRRIVAEL 185
R+ + EL
Sbjct: 487 LRKDLREL 494
>gi|383773055|ref|YP_005452121.1| acyl-CoA synthetase [Bradyrhizobium sp. S23321]
gi|381361179|dbj|BAL78009.1| acyl-CoA synthetase [Bradyrhizobium sp. S23321]
Length = 497
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 74/178 (41%), Gaps = 58/178 (32%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
K S G+ + E+ I DE+G NVNG++C+R GP + R +P+ AF W
Sbjct: 314 EKIGSTGRAIAHVEIEIRDEDGRTLPPNVNGEICLR-GPKITRGYWKDPDKTAAAFFGDW 372
Query: 118 FLSGDLGYFDSQRCLNM------------------------------------------W 135
F SGD+GY D + L + W
Sbjct: 373 FRSGDVGYLDDEGFLYLTDRKKDMIISGGENIASSEVERVIYELSEVREVAVIGLRDPRW 432
Query: 136 KISPT-----------EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
P E+ A+ E C+ +ASFKVPK++ I DSL P +GKI +R++
Sbjct: 433 GERPVAIVVLAEGASLELPALTEHCRARLASFKVPKQLVIRDSLPRNP-SGKILKRVL 489
>gi|384220241|ref|YP_005611407.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium japonicum USDA 6]
gi|354959140|dbj|BAL11819.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium japonicum USDA 6]
Length = 497
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 78/182 (42%), Gaps = 59/182 (32%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQF--GW 117
K S G+ + E+ I DE+G NVNG++C+R GP + R ++ KTA F W
Sbjct: 314 EKIGSTGRAIAHVEIEIRDEDGERLPPNVNGEICLR-GPKITRGYWKDSQKTAAAFFGDW 372
Query: 118 FLSGDLGYFDSQRCLNM------------------------------------------W 135
F SGD+GY D + L + W
Sbjct: 373 FRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYDLPEVREVAVIGLRDARW 432
Query: 136 KISPT-----------EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV-A 183
P E+ A+ E C+ +ASFKVPK++ I DSL P +GKI +R++ A
Sbjct: 433 GERPVAIVVLAEGASLELPALTEHCRARLASFKVPKELVIRDSLPRNP-SGKILKRVLRA 491
Query: 184 EL 185
EL
Sbjct: 492 EL 493
>gi|363750354|ref|XP_003645394.1| hypothetical protein Ecym_3065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889028|gb|AET38577.1| Hypothetical protein Ecym_3065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 531
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 87/210 (41%), Gaps = 63/210 (30%)
Query: 37 EFGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
EFG V A ++ + N G K SVGKP E+ I +++ G++
Sbjct: 317 EFGAPVIEAYAMTEAAHQMTSNELPPGMRKPGSVGKPQGVEVVILNDDDEVLPQGAQGEV 376
Query: 93 CIREGPMVQ--RINNPEANKTAF--QFGWFLSGDLGYFDSQRCLNMW------------K 136
IR GP V NN +ANK F + +F +GD GYFD L + K
Sbjct: 377 SIR-GPNVTPGYRNNDKANKENFTREAHYFRTGDRGYFDEDGFLILTGRLKELINRGGEK 435
Query: 137 ISPTEVDAV-----------------------------------------KEFCKRNVAS 155
ISP E+DAV +F + VA+
Sbjct: 436 ISPLELDAVILSHPAVEEVVSFGAANEKYGQVVNAAIVLKKGKSLQYGDLVKFMEEKVAA 495
Query: 156 FKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
FK+P++V+ SL P TGKIQRRIVAEL
Sbjct: 496 FKIPERVYFVTSLPKTP-TGKIQRRIVAEL 524
>gi|384493910|gb|EIE84401.1| hypothetical protein RO3G_09111 [Rhizopus delemar RA 99-880]
Length = 1254
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 65/191 (34%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP GPHKA SVG E+AI D+ G + G++CIR G V + +NNPEA ++
Sbjct: 1057 LPHRGPHKAGSVGLGQGVEVAILDDQGNPAEL---GEVCIR-GKNVTKGYLNNPEATASS 1112
Query: 113 F-QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------- 145
F + G+F +GD G D L + KISP E+D+V
Sbjct: 1113 FTKDGFFRTGDQGKKDKDGYLILTGRIKELINRGGEKISPIELDSVLLSHPKIAEAVSFG 1172
Query: 146 -------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLT 174
+ FC +A FKVPK++++ D + K T
Sbjct: 1173 VPDDMYGQEVHATVVLKSDVKDSEKAIERELQAFCSSKLAKFKVPKRIYVTDIMP-KTAT 1231
Query: 175 GKIQRRIVAEL 185
GKIQRR + ++
Sbjct: 1232 GKIQRRKMVDV 1242
>gi|148261447|ref|YP_001235574.1| AMP-dependent synthetase and ligase [Acidiphilium cryptum JF-5]
gi|326404926|ref|YP_004285008.1| putative fatty-acid--CoA ligase [Acidiphilium multivorum AIU301]
gi|146403128|gb|ABQ31655.1| AMP-dependent synthetase and ligase [Acidiphilium cryptum JF-5]
gi|325051788|dbj|BAJ82126.1| putative fatty-acid--CoA ligase [Acidiphilium multivorum AIU301]
Length = 506
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 73/173 (42%), Gaps = 57/173 (32%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
KA SVG E+AI D++G G++ IR GP V NPEAN AF GWF
Sbjct: 325 KAGSVGIAAGPEIAIMDDDGTLLPQGETGEVVIR-GPNVTAGYAANPEANAKAFTNGWFR 383
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEVD------------------------ 143
+GD G D++ L + KISP EVD
Sbjct: 384 TGDQGMLDAEGYLFLTGRLKEQINRGGEKISPLEVDVALLDHPDIAEVCTFAIPHDKLGE 443
Query: 144 -----------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
A+++F +A+FKVP+++ I +++ P TGK+QR
Sbjct: 444 EVGAIVVPRAGTAPDPQAIRDFAAGRLAAFKVPRRILIMEAIPKGP-TGKVQR 495
>gi|326330376|ref|ZP_08196686.1| long-chain-fatty-acid--CoA ligase [Nocardioidaceae bacterium
Broad-1]
gi|325951913|gb|EGD43943.1| long-chain-fatty-acid--CoA ligase [Nocardioidaceae bacterium
Broad-1]
Length = 542
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
T + P++ A +VG PV ++A+ DE+G A +G++ R GP + ++N
Sbjct: 337 TATLFRPEHQLSHAGAVGTPVTNVQVAVMDEDGTLLPAGQDGEIVYR-GPHALTGYLDNQ 395
Query: 107 EANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIAD 166
EA AF GWF SGD+G+FDS L W + D +K NVAS +V K ++ AD
Sbjct: 396 EATDEAFAHGWFHSGDVGHFDSDGIL--W-FTDRRKDVIKT-GGENVASIEVEKALYAAD 451
>gi|338989168|ref|ZP_08634040.1| AMP-dependent synthetase and ligase [Acidiphilium sp. PM]
gi|338205918|gb|EGO94182.1| AMP-dependent synthetase and ligase [Acidiphilium sp. PM]
Length = 438
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 73/173 (42%), Gaps = 57/173 (32%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
KA SVG E+AI D++G G++ IR GP V NPEAN AF GWF
Sbjct: 257 KAGSVGIAAGPEIAIMDDDGTLLPQGETGEVVIR-GPNVTAGYAANPEANAKAFTNGWFR 315
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEVD------------------------ 143
+GD G D++ L + KISP EVD
Sbjct: 316 TGDQGMLDAEGYLFLTGRLKEQINRGGEKISPLEVDVALLDHPDIAEVCTFAIPHDKLGE 375
Query: 144 -----------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
A+++F +A+FKVP+++ I +++ P TGK+QR
Sbjct: 376 EVGAIVVPRAGTAPDPQAIRDFAAGRLAAFKVPRRILIMEAIPKGP-TGKVQR 427
>gi|366999268|ref|XP_003684370.1| hypothetical protein TPHA_0B02630 [Tetrapisispora phaffii CBS 4417]
gi|357522666|emb|CCE61936.1| hypothetical protein TPHA_0B02630 [Tetrapisispora phaffii CBS 4417]
Length = 538
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 75/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P E+ I DE + G++CIR E NNP+ANK F ++
Sbjct: 349 GKRKPGTVGQPQGVELYILDEKDNKLEQGQIGEVCIRGENVTPGYANNPKANKENFTWEY 408
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK----------------- 146
+F +GD GY D++ L + KISP E+D +
Sbjct: 409 NYFRTGDQGYIDAEGFLVLTGRIKELINRGGEKISPAELDNIMLSNPKVREAVCFAVPDL 468
Query: 147 ------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+F VASFK+P KV+ L K TGKIQRRI+
Sbjct: 469 KYGQIVNAAIVLKDNETMSYEELIKFMSNKVASFKLPSKVYFVKQLP-KTATGKIQRRII 527
Query: 183 AE 184
AE
Sbjct: 528 AE 529
>gi|337265200|ref|YP_004609255.1| AMP-dependent synthetase and ligase [Mesorhizobium opportunistum
WSM2075]
gi|336025510|gb|AEH85161.1| AMP-dependent synthetase and ligase [Mesorhizobium opportunistum
WSM2075]
Length = 504
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 76/201 (37%), Gaps = 61/201 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
FGC V + + + N G K SVG E+A+ +G KA G++
Sbjct: 297 FGCPVIESYGMTEAAHQMASNRLPPGLRKPGSVGAGAGPEVAVMAPDGRLLKAGETGEIV 356
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISP 139
IR GP V NPEAN TAF GWF +GD G D L + KISP
Sbjct: 357 IR-GPNVTAGYEKNPEANATAFAHGWFHTGDQGVLDEDSYLRVTGRLKEIINRGGEKISP 415
Query: 140 TEVDAV-----------------------------------------KEFCKRNVASFKV 158
EVD V + + +A FKV
Sbjct: 416 LEVDDVLMDHPAVAQVVTFAMPHDKLGEEVAAAVVLREGMGATENDIRTYAATRLADFKV 475
Query: 159 PKKVFIADSLSGKPLTGKIQR 179
P+KV I D + K TGK+QR
Sbjct: 476 PRKVVILDEIP-KGATGKLQR 495
>gi|156740708|ref|YP_001430837.1| AMP-dependent synthetase/ligase [Roseiflexus castenholzii DSM
13941]
gi|156232036|gb|ABU56819.1| AMP-dependent synthetase and ligase [Roseiflexus castenholzii DSM
13941]
Length = 506
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 73/181 (40%), Gaps = 59/181 (32%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGW 117
PH A SVG E+ I D++GV+ G++ +R GP V NNPEA AF GW
Sbjct: 318 PHYAGSVGYGFGVEVTILDDHGVELPRGERGEVAVR-GPNVFDGYENNPEATAAAFTNGW 376
Query: 118 FLSGDLGYFDSQRCLNMW--------------KISPTEVDAV------------------ 145
F +GD G D Q L W KISP E+D V
Sbjct: 377 FRTGDQGRIDEQGYL--WLTGRLKELINRGGEKISPLEIDDVLLRHPAVAEAVAFAAPHR 434
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+E C +A FKVP+ + I + + TGK+QR +A+
Sbjct: 435 TLGEEVYAAVVLRSEATERELREHCAAFLADFKVPRVIHILSEIP-RGATGKVQRLAMAK 493
Query: 185 L 185
L
Sbjct: 494 L 494
>gi|19076049|ref|NP_588549.1| acetyl-CoA ligase (predicted) [Schizosaccharomyces pombe 972h-]
gi|46395623|sp|O74976.1|FAT2_SCHPO RecName: Full=Putative peroxisomal-coenzyme A synthetase
gi|3184098|emb|CAA19311.1| acetyl-CoA ligase (predicted) [Schizosaccharomyces pombe]
Length = 512
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 58/180 (32%)
Query: 61 HKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAF-QFGW 117
HK SVGKP E+ I D+ G + G++C+R G V + +NNP ANK++F + +
Sbjct: 325 HKPHSVGKPFGVELKILDQKGNEMPQGKEGEICVR-GINVTKGYLNNPAANKSSFTKDRF 383
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------------- 145
F +GD G D + + KISP E+DAV
Sbjct: 384 FRTGDEGKLDKDGYVFITGRIKELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKY 443
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++ ++ VA+FK+PKK + D + K TGK+QRR+V +
Sbjct: 444 GQDIQAAINPVAGKTVTPKQLHDYLEQKVAAFKIPKKFYFTDRIP-KTATGKVQRRLVCD 502
>gi|282162902|ref|YP_003355287.1| putative acyl-CoA synthetase [Methanocella paludicola SANAE]
gi|282155216|dbj|BAI60304.1| putative acyl-CoA synthetase [Methanocella paludicola SANAE]
Length = 585
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 70/171 (40%), Gaps = 55/171 (32%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG P E AI D G A G++ IR GP V NNP+AN AF GW
Sbjct: 313 KPGSVGLPWGTEAAILDGAGNMLTAGEAGEVAIR-GPGVTAGYENNPDANAAAFHDGWLR 371
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEV------------------------- 142
+GD GY D+ L++ K+SP EV
Sbjct: 372 TGDNGYIDANGYLHLLGRLKEIINRGGEKVSPFEVEEALLAHPAVKEAAVFPVPGGPLGE 431
Query: 143 --------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+A+KEF +A FKVP ++ I +SL P TGK+QR
Sbjct: 432 EVGAAVVSSDGVTAEALKEFLIPRMAYFKVPSRIVIVESLPKGP-TGKVQR 481
>gi|119094195|gb|ABL61017.1| acyl-CoA synthetase [uncultured marine bacterium HF10_25F10]
Length = 499
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 55/176 (31%)
Query: 58 NGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFG 116
NG KA VG E+ I D+ G + G++CIR + NNP AN+++F G
Sbjct: 314 NGKQKAGFVGIATSPEVCIMDQEGNRLTGDAEGEVCIRGDNVTPGYENNPAANESSFTSG 373
Query: 117 WFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------- 145
WF +GD G+FD L + K+SP EVD V
Sbjct: 374 WFRTGDQGFFDGDDYLKITGRLKEIINRGGEKVSPLEVDNVLMEHPAVQQVVTFAVADRM 433
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ + + ++A FK+PK + D + K TGK+QR
Sbjct: 434 LGEEIGAAVVLADGGELDAAGLRAYAETHLAKFKIPKHIVFLDEIP-KGATGKLQR 488
>gi|67906792|gb|AAY82855.1| predicted acyl-CoA synthetase [uncultured bacterium MedeBAC46A06]
Length = 499
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 59/200 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
FGC V A + + N KA VG E+ I D+ G G++C
Sbjct: 290 FGCPVIEAYGMTEAAHQMTSNPLGGKGQKAGFVGIATSPEVCIMDQEGNQLSGEAEGEVC 349
Query: 94 IREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPT 140
IR + NNP AN+++F GWF +GD GYFD L + K+SP
Sbjct: 350 IRGDNVTPGYENNPAANESSFTNGWFRTGDQGYFDGDGYLKITGRLKEIINRGGEKVSPL 409
Query: 141 EVDAV-----------------------------------------KEFCKRNVASFKVP 159
EVD V +++ ++++A FK+P
Sbjct: 410 EVDNVLMDHPDIQQVVTFAVADRMLGEEIGAAVVLVDGAEMDAGGLRDYAEQHLAKFKIP 469
Query: 160 KKVFIADSLSGKPLTGKIQR 179
K V + + K TGK+QR
Sbjct: 470 KHVVFLEEIP-KGATGKLQR 488
>gi|190408627|gb|EDV11892.1| peroxisomal-coenzyme A synthetase [Saccharomyces cerevisiae
RM11-1a]
Length = 543
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P + I D+N G++ IR E + NNP+ANK F +
Sbjct: 351 GKRKPGTVGQPQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRE 410
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK----------------- 146
+F +GD GYFD + L + KISP E+D +
Sbjct: 411 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDD 470
Query: 147 ------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F K+++ASFK+P KV+ D L K TGKIQRR++
Sbjct: 471 MYGQVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLP-KTATGKIQRRVI 529
Query: 183 AE 184
AE
Sbjct: 530 AE 531
>gi|398365585|ref|NP_009781.3| Pcs60p [Saccharomyces cerevisiae S288c]
gi|586339|sp|P38137.1|FAT2_YEAST RecName: Full=Peroxisomal-coenzyme A synthetase
gi|536615|emb|CAA85185.1| FAT2 [Saccharomyces cerevisiae]
gi|151946609|gb|EDN64831.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|256272873|gb|EEU07841.1| Pcs60p [Saccharomyces cerevisiae JAY291]
gi|285810554|tpg|DAA07339.1| TPA: Pcs60p [Saccharomyces cerevisiae S288c]
gi|290878239|emb|CBK39298.1| Pcs60p [Saccharomyces cerevisiae EC1118]
gi|323305889|gb|EGA59625.1| Pcs60p [Saccharomyces cerevisiae FostersB]
gi|323338736|gb|EGA79952.1| Pcs60p [Saccharomyces cerevisiae Vin13]
gi|323349806|gb|EGA84021.1| Pcs60p [Saccharomyces cerevisiae Lalvin QA23]
gi|323356152|gb|EGA87957.1| Pcs60p [Saccharomyces cerevisiae VL3]
gi|349576598|dbj|GAA21769.1| K7_Pcs60p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766924|gb|EHN08413.1| Pcs60p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392301071|gb|EIW12160.1| Pcs60p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 543
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P + I D+N G++ IR E + NNP+ANK F +
Sbjct: 351 GKRKPGTVGQPQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRE 410
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK----------------- 146
+F +GD GYFD + L + KISP E+D +
Sbjct: 411 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDD 470
Query: 147 ------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F K+++ASFK+P KV+ D L K TGKIQRR++
Sbjct: 471 MYGQVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLP-KTATGKIQRRVI 529
Query: 183 AE 184
AE
Sbjct: 530 AE 531
>gi|365761942|gb|EHN03562.1| Pcs60p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 544
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 76/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P + I D+ G++CIR E + NNP+ANK F +
Sbjct: 352 GKRKPGTVGQPQGVIVVILDDKDNILPPGKVGEVCIRGENVTLGYANNPKANKENFTKRE 411
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------ 145
+F +GD GYFD + L + KISP E+D +
Sbjct: 412 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIEEAVAFGVPDD 471
Query: 146 -----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F K+++A+FKVP KV+ D L K TGKIQRRI+
Sbjct: 472 MYGQVVQAAVVLKKGEKMTYEELAGFLKKHLAAFKVPTKVYFVDKLP-KTATGKIQRRII 530
Query: 183 AE 184
AE
Sbjct: 531 AE 532
>gi|323310017|gb|EGA63212.1| Pcs60p [Saccharomyces cerevisiae FostersO]
Length = 438
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P + I D+N G++ IR E + NNP+ANK F +
Sbjct: 246 GKRKPGTVGQPQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRE 305
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK----------------- 146
+F +GD GYFD + L + KISP E+D +
Sbjct: 306 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDD 365
Query: 147 ------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F K+++ASFK+P KV+ D L K TGKIQRR++
Sbjct: 366 MYGQVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLP-KTATGKIQRRVI 424
Query: 183 AE 184
AE
Sbjct: 425 AE 426
>gi|156844719|ref|XP_001645421.1| hypothetical protein Kpol_534p44 [Vanderwaltozyma polyspora DSM
70294]
gi|156116083|gb|EDO17563.1| hypothetical protein Kpol_534p44 [Vanderwaltozyma polyspora DSM
70294]
Length = 538
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 59/183 (32%)
Query: 59 GPHKASSVGKPVRREMAI-PDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--Q 114
G K +VG+P E+ I DE+ + + ++ G++ IR E + NNP+AN+ F +
Sbjct: 348 GKRKPGTVGQPQGVEVVILNDEDQILPQGSI-GEVSIRGENVTLGYANNPKANEENFTRR 406
Query: 115 FGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV----------------- 145
+F +GD G+FD + L + KISP E+D++
Sbjct: 407 KNYFRTGDQGFFDPEGFLVLTGRIKELINRGGEKISPVELDSIMLSNSKINEAVAFGVSD 466
Query: 146 ------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRI 181
KEF VASFK+P KV+ D L K TGKIQRRI
Sbjct: 467 EKYGQVVQAAVVLKPGNKMDYQELKEFMSTKVASFKIPIKVYFVDKLP-KTATGKIQRRI 525
Query: 182 VAE 184
+AE
Sbjct: 526 IAE 528
>gi|421604732|ref|ZP_16046825.1| acyl-CoA synthetase, partial [Bradyrhizobium sp. CCGE-LA001]
gi|404263158|gb|EJZ28745.1| acyl-CoA synthetase, partial [Bradyrhizobium sp. CCGE-LA001]
Length = 413
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GPH K + G + +++I D+ G + KAN +G++C+ GP
Sbjct: 321 VTGNITVLPAALHDPEDGPHAKIGTCGFERTGMQVSIQDDEGHELKANQSGEICVI-GPA 379
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
V +NPEAN AF+ GWF +GDLG+ D +
Sbjct: 380 VFAGYYDNPEANAKAFRNGWFRTGDLGHMDEE 411
>gi|207347537|gb|EDZ73674.1| YBR222Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 325
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P + I D+N G++ IR E + NNP+ANK F +
Sbjct: 133 GKRKPGTVGQPQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRE 192
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK----------------- 146
+F +GD GYFD + L + KISP E+D +
Sbjct: 193 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDD 252
Query: 147 ------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F K+++ASFK+P KV+ D L K TGKIQRR++
Sbjct: 253 MYGQVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLP-KTATGKIQRRVI 311
Query: 183 AE 184
AE
Sbjct: 312 AE 313
>gi|330797172|ref|XP_003286636.1| hypothetical protein DICPUDRAFT_97453 [Dictyostelium purpureum]
gi|325083384|gb|EGC36838.1| hypothetical protein DICPUDRAFT_97453 [Dictyostelium purpureum]
Length = 536
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 56/186 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAF 113
LP++G K SVGK + +++I D+ G K G++CI+ + NNP+AN F
Sbjct: 345 LPQDGARKPGSVGKGMNVQISIVDDQGNHLKQGDVGEVCIKGKNVTHGYHNNPQANIDNF 404
Query: 114 -QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD----------------- 143
+ GWFL+GD+GY D + L + KISP EVD
Sbjct: 405 TKDGWFLTGDIGYLDPENYLILKGRKKEIINRGGEKISPLEVDNALLENDKVLEAICFGV 464
Query: 144 ------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ EF ++ + SFK+PKK+ I L K +GK+QR
Sbjct: 465 PDQKYGEEIWAAIIPKEGQTLTDAEITEFLQKKLVSFKIPKKIIITKELP-KTASGKVQR 523
Query: 180 RIVAEL 185
RI++E
Sbjct: 524 RIISEF 529
>gi|319780399|ref|YP_004139875.1| AMP-dependent synthetase and ligase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166287|gb|ADV09825.1| AMP-dependent synthetase and ligase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 508
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 75/201 (37%), Gaps = 61/201 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
FGC V + + + N G K SVG E+A+ +G A G++
Sbjct: 301 FGCPVIESYGMTEAAHQMASNRLPPGQRKPGSVGASAGPEVAVMAPDGRLLDAGETGEIV 360
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISP 139
IR GP V NP+AN TAF GWF +GD G D L + KISP
Sbjct: 361 IR-GPNVTTGYEKNPDANATAFAHGWFHTGDQGVLDGDGYLRVTGRLKEIINRGGEKISP 419
Query: 140 TEVDAV-----------------------------------------KEFCKRNVASFKV 158
EVD V + + +A FKV
Sbjct: 420 LEVDDVLMDHPAVAQVVTFAMPHDKLGEEVAAAVVLREGISATEGDIRTYAATRLADFKV 479
Query: 159 PKKVFIADSLSGKPLTGKIQR 179
P+K+ I D + K TGK+QR
Sbjct: 480 PRKILILDEIP-KGATGKLQR 499
>gi|374575678|ref|ZP_09648774.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM471]
gi|374423999|gb|EHR03532.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM471]
Length = 535
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 19/140 (13%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GPH K + G + +++I D+ G + AN +G++C+ GP
Sbjct: 321 VTGNITVLPAALHDPEDGPHAKIGTCGFERTGMQVSIQDDEGRELGANQSGEICVI-GPA 379
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVDA- 144
V +NPEAN AF+ GWF +GDLG+ D + R +M+ I P E++
Sbjct: 380 VLAGYYDNPEANAKAFRNGWFRTGDLGHMDEEGFVYITGRASDMYISGGSNIYPREIEEK 439
Query: 145 -VKEFCKRNVASFKVPKKVF 163
+ C VA VP +
Sbjct: 440 ILTHPCVGEVAVLGVPDATW 459
>gi|398825270|ref|ZP_10583572.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. YR681]
gi|398224060|gb|EJN10386.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. YR681]
Length = 497
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 59/182 (32%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
K S G+ + ++ I DE+G NVNG++C+R GP + R +P+ AF W
Sbjct: 314 EKIGSTGRAIAHVQIEIRDEDGKALPPNVNGEICLR-GPKITRGYWKDPDKTAAAFFGDW 372
Query: 118 FLSGDLGYFDSQRCLNM------------------------------------------W 135
F SGD+GY D + L + W
Sbjct: 373 FRSGDVGYLDDEGFLYLTDRKKDMIISGGENIASSEVERVIYDLPGVREVAVIGLRDARW 432
Query: 136 KISPT-----------EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV-A 183
P E+ A+ + C+ +ASFKVP+++ I DSL P +GKI +R++ A
Sbjct: 433 GERPVAIVVLAEGARLELPALTKHCRARLASFKVPRELIIRDSLPRNP-SGKILKRVLRA 491
Query: 184 EL 185
EL
Sbjct: 492 EL 493
>gi|402078735|gb|EJT74000.1| peroxisomal-coenzyme A synthetase [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 524
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 75/185 (40%), Gaps = 56/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP+ G K SVG E+ I D+ G + G++CIR E +NN EAN AF
Sbjct: 329 LPEVGKRKPGSVGVGQGVEVRILDDKGDELAQGSEGEICIRGENVTKGYLNNTEANAGAF 388
Query: 114 -QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--------------- 145
+ G+F +GD G D L + KISP E+D V
Sbjct: 389 TKGGFFRTGDQGKMDEDGYLVITGRIKELINKAGEKISPIELDNVLTRHPAVSEAVSFAI 448
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ + +A FKVPKK++ D + K TGKIQR
Sbjct: 449 PDDMYGQEVAVAIVLKPGAKLSQDELRAWVADKLAKFKVPKKIYFTDVMP-KTATGKIQR 507
Query: 180 RIVAE 184
RIVAE
Sbjct: 508 RIVAE 512
>gi|386395128|ref|ZP_10079906.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM1253]
gi|385735754|gb|EIG55950.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM1253]
Length = 535
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 19/140 (13%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GPH K + G + +++I D+ G + AN +G++C+ GP
Sbjct: 321 VTGNITVLPAALHDPEDGPHAKIGTCGFERTGMQVSIQDDEGRELGANQSGEICVI-GPA 379
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVDA- 144
V +NPEAN AF+ GWF +GDLG+ D + R +M+ I P E++
Sbjct: 380 VLAGYYDNPEANAKAFRNGWFRTGDLGHMDEEGFVYITGRASDMYISGGSNIYPREIEEK 439
Query: 145 -VKEFCKRNVASFKVPKKVF 163
+ C VA VP +
Sbjct: 440 ILTHPCVGEVAVLGVPDATW 459
>gi|398821171|ref|ZP_10579653.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. YR681]
gi|398228151|gb|EJN14291.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. YR681]
Length = 535
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GPH K + G + +++I D++G + AN +G++C+ GP
Sbjct: 321 VTGNITVLPAALHDPEDGPHAKIGTCGFERTGMQVSIQDDDGRELAANQSGEICVI-GPA 379
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
V +NPEAN AF+ GWF +GDLG+ D +
Sbjct: 380 VLAGYYDNPEANAKAFRNGWFRTGDLGHMDEE 411
>gi|403218441|emb|CCK72931.1| hypothetical protein KNAG_0M00780 [Kazachstania naganishii CBS
8797]
Length = 542
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 77/182 (42%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G KAS+VG+P E+ I D+ G++ IR E NN +AN+ F +
Sbjct: 352 GKRKASTVGQPQGVEVFILDDKDNVLPQGATGEVSIRGENVTPGYKNNEKANRENFTRRE 411
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK----------------- 146
+F +GD GYFDS+ L + KISP E+D+V
Sbjct: 412 NYFRTGDQGYFDSEGFLVLTGRIKELINRGGEKISPIELDSVMLSHPQVEEAVSFGVADD 471
Query: 147 ------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
++ + +ASFK+P KV+ D L K TGKIQRRI+
Sbjct: 472 MYGQVVQAAVVLKPGAQLNYQQLCQYMEDKLASFKIPTKVYFVDKLP-KTATGKIQRRII 530
Query: 183 AE 184
AE
Sbjct: 531 AE 532
>gi|406603191|emb|CCH45286.1| peroxisomal-coenzyme A synthetase [Wickerhamomyces ciferrii]
Length = 526
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFG 116
G K +VG+ E+ I ++ G G++ I+ G V + NN +AN +F G
Sbjct: 340 GKRKPGTVGQGQGVEIVILNDQGDVLPQGQIGEVSIK-GTNVTKGYANNDKANAESFTKG 398
Query: 117 WFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------- 145
+F +GD GY D ++ L + KISP E+D V
Sbjct: 399 YFRTGDQGYLDDEKFLVLTGRIKELINRGGEKISPIELDGVLLSHPKVDEAVAFGVPDEK 458
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K+F +ASFK+P K + ADSL K TGKIQRR +A
Sbjct: 459 YGQVVNAAIVLKKGEQLSVDELKQFLGEKIASFKIPSKFYFADSLV-KTATGKIQRRKIA 517
Query: 184 EL 185
E+
Sbjct: 518 EV 519
>gi|398389432|ref|XP_003848177.1| hypothetical protein MYCGRDRAFT_77337 [Zymoseptoria tritici IPO323]
gi|339468051|gb|EGP83153.1| hypothetical protein MYCGRDRAFT_77337 [Zymoseptoria tritici IPO323]
Length = 516
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 58/179 (32%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAF-QFGWF 118
K SVG E+ I D++G + ++CIR GP V + INN +AN +F + G+F
Sbjct: 327 KPGSVGLGQGVEVKILDQSGKEVVQGSEAEICIR-GPNVTKGYINNDKANAESFTEGGFF 385
Query: 119 LSGDLGYFDSQ---------RCLNMW---KISPTEVD----------------------- 143
+GD G D + L ++ KISP E+D
Sbjct: 386 RTGDQGKKDEDGYVIITGRIKELIVYGGEKISPIELDNILAQHPAVAEAVAFAIPDEIYG 445
Query: 144 ------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+KE+ + VA FKVPK+VFI++++ K TGKIQRRIVAE
Sbjct: 446 QVVGMAVVLKDGQKAGEEEIKEWMREKVAKFKVPKRVFISENMP-KTATGKIQRRIVAE 503
>gi|91781041|ref|YP_556248.1| putative AMP-dependent synthetase and ligase [Burkholderia
xenovorans LB400]
gi|91693701|gb|ABE36898.1| Putative AMP-dependent synthetase and ligase [Burkholderia
xenovorans LB400]
Length = 530
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 56/190 (29%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEAN 109
++ P +G ++ S+GK V E+ + DENG + G++ IR GPM+ NPEA
Sbjct: 339 IMPPGDGLDQSDSIGKVVACGEIRVMDENGCEMPPGEPGELWIR-GPMIASGYWRNPEAT 397
Query: 110 KTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------------- 143
++AF G++ SGD+G DSQ + + +KI P EV+
Sbjct: 398 ESAFVAGFWKSGDIGSVDSQGYVRIADRKKDMINRGGFKIYPAEVENVLCELGGVLEVAV 457
Query: 144 --------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
V+EFC +A +K+P V I + + GK+
Sbjct: 458 VGRPHVILGETVVAFVRCVDVDVTDAIVREFCSEKLADYKIPDHVVIVEEPLPRNPNGKM 517
Query: 178 QRRIVAELRK 187
Q+ ++ E+ +
Sbjct: 518 QKEMLREMAR 527
>gi|406860793|gb|EKD13850.1| peroxisomal-coenzyme A synthetase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 516
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 76/176 (43%), Gaps = 56/176 (31%)
Query: 65 SVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF-GWFLSGD 122
SVG E+ I D++G + ++CIR E +NNPEANK++F G+F +GD
Sbjct: 331 SVGIGQGVEIRILDQSGKEVAQGSEAEICIRGENVTKGYLNNPEANKSSFTADGFFRTGD 390
Query: 123 LGYFDS----------QRCLNMW--KISPTEVDAV------------------------- 145
G D + +N KISP E+D V
Sbjct: 391 QGKKDKDGYVIITGRIKELINKGGEKISPIELDNVLARHPKVGEAVSFAIPDEMYGQEVA 450
Query: 146 ----------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
KE+ +A FKVPKKV+ D++ K TGK+QRRIVAE+
Sbjct: 451 VAIVPKTGEKISEQELKEWVADKLAKFKVPKKVYFTDNMP-KTATGKVQRRIVAEI 505
>gi|27378293|ref|NP_769822.1| acyl-CoA synthetase [Bradyrhizobium japonicum USDA 110]
gi|27351440|dbj|BAC48447.1| bll3182 [Bradyrhizobium japonicum USDA 110]
Length = 497
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 59/182 (32%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQF--GW 117
K S G+ + E+ I DE G NVNG++C+ GP + R ++ KTA F W
Sbjct: 314 EKIGSTGRAIAHVEIEIRDEEGRTLPPNVNGEICLC-GPKITRGYWKDSEKTAAAFFGDW 372
Query: 118 FLSGDLGYFDSQRCLNM------------------------------------------W 135
F SGD+GY D + L + W
Sbjct: 373 FRSGDVGYLDDEGFLYLTDRKKDMIISGGENIASSEVERVIYELSEVREVAVIGLRDARW 432
Query: 136 KISPT-----------EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV-A 183
P E+ A+ E C+ +ASFKVPK++ + DSL P +GKI +R++ A
Sbjct: 433 GERPVAIVVLAEGASLELPALTEHCRARLASFKVPKQLVVRDSLPRNP-SGKILKRVLRA 491
Query: 184 EL 185
EL
Sbjct: 492 EL 493
>gi|433772052|ref|YP_007302519.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Mesorhizobium
australicum WSM2073]
gi|433664067|gb|AGB43143.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Mesorhizobium
australicum WSM2073]
Length = 506
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 75/201 (37%), Gaps = 61/201 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
FGC V + + + N G K SVG E+A+ +G +A G++
Sbjct: 299 FGCPVIESYGMTEAAHQMASNRLPPGLRKPGSVGAAGGPEVAVMAPDGRLMQAGETGEIV 358
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISP 139
IR GP V NP+AN TAF GWF +GD G D L + KISP
Sbjct: 359 IR-GPNVTSGYEKNPDANATAFAHGWFHTGDQGVLDDDGYLRVTGRLKEIINRGGEKISP 417
Query: 140 TEVDAV-----------------------------------------KEFCKRNVASFKV 158
EVD V + +A FKV
Sbjct: 418 LEVDNVLMDHPAVAQVVTFAMPHDKLGEDVAAAVVLREGMSASEGDIRAHAAMRLADFKV 477
Query: 159 PKKVFIADSLSGKPLTGKIQR 179
P+KV I D + K TGK+QR
Sbjct: 478 PRKVLILDEIP-KGATGKLQR 497
>gi|307727933|ref|YP_003911146.1| AMP-dependent synthetase and ligase [Burkholderia sp. CCGE1003]
gi|307588458|gb|ADN61855.1| AMP-dependent synthetase and ligase [Burkholderia sp. CCGE1003]
Length = 525
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
E+ I D+ G A +G++C+R GP V NNPEAN AF++GWF +GDLG+ D +
Sbjct: 351 EIGILDDEGHRLSAGASGEICVR-GPAVFIGYYNNPEANAKAFKYGWFHTGDLGHLDEEG 409
Query: 131 CL 132
L
Sbjct: 410 FL 411
>gi|328768064|gb|EGF78111.1| hypothetical protein BATDEDRAFT_13423 [Batrachochytrium
dendrobatidis JAM81]
Length = 536
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 66/190 (34%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFG 116
G K SVGK + I D+NG + G++C+ GP NNP+A +F
Sbjct: 338 GIRKPGSVGKGRGVNVRILDDNGKELSGTAVGEVCV-SGPNLFTGYHNNPKATAESFHID 396
Query: 117 -----WFLSGDLGYFDSQRCLNM------------WKISPTEVDAV-------------- 145
WF +GDLG D R + + KISP E+D V
Sbjct: 397 SKHQRWFRTGDLGRMDENRFVVLVGRIKEQINRGGEKISPVEIDQVLLQHPAVAEVVTFG 456
Query: 146 -------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLT 174
K F ++++A+FKVP K+ I D++ K T
Sbjct: 457 SPSKLYGQEIEAAVVLKKTGNENKVTTEEDLKVFARKSLAAFKVPCKIHIVDTIP-KTAT 515
Query: 175 GKIQRRIVAE 184
GK+QRR+V++
Sbjct: 516 GKVQRRVVSD 525
>gi|27379822|ref|NP_771351.1| acyl-CoA synthetase [Bradyrhizobium japonicum USDA 110]
gi|27352975|dbj|BAC49976.1| fatty acid CoA ligase [Bradyrhizobium japonicum USDA 110]
Length = 560
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GPH K + G + +++I D+ G + AN +G++C+ GP
Sbjct: 346 VTGNITVLPAALHDPEDGPHAKIGTCGFERTGMQVSIQDDEGRELGANQSGEICVI-GPA 404
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
V +NPEAN AF+ GWF +GDLG+ D +
Sbjct: 405 VLAGYYDNPEANAKAFRNGWFRTGDLGHMDEE 436
>gi|148658425|ref|YP_001278630.1| AMP-dependent synthetase and ligase [Roseiflexus sp. RS-1]
gi|148570535|gb|ABQ92680.1| AMP-dependent synthetase and ligase [Roseiflexus sp. RS-1]
Length = 506
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 71/181 (39%), Gaps = 59/181 (32%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGW 117
PH A SVG E+ I DE G ++ G++ +R GP V NNPEA AF GW
Sbjct: 318 PHHAGSVGYGFGVEVTILDEQGAEKARGERGEVAVR-GPNVFDGYENNPEATAAAFTNGW 376
Query: 118 FLSGDLGYFDSQRCLNMW--------------KISPTEVDAV------------------ 145
F +GD G D L W KISP E+D V
Sbjct: 377 FRTGDQGRIDDNGYL--WLTGRLKELINRGGEKISPLEIDDVLLRHPAVAEAVAFAAPHR 434
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++ C +A FKVP+ + I + + TGK+QR +A+
Sbjct: 435 TLGEEVHAAVVLRAAATERELRDHCAAFLADFKVPRVIHILPEIP-RGATGKVQRIGMAK 493
Query: 185 L 185
L
Sbjct: 494 L 494
>gi|219849401|ref|YP_002463834.1| AMP-dependent synthetase and ligase [Chloroflexus aggregans DSM
9485]
gi|219543660|gb|ACL25398.1| AMP-dependent synthetase and ligase [Chloroflexus aggregans DSM
9485]
Length = 504
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 73/181 (40%), Gaps = 57/181 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFG 116
G K SVG ++ I D+NG V G++ +R GP V NNPEAN T F G
Sbjct: 321 GRRKPGSVGIGFGVDVGIMDDNGQFLPNGVRGEVVVR-GPNVVDGYENNPEANATTFVNG 379
Query: 117 WFLSGDLGYF--DSQRCLN----------MWKISPTEVDAV------------------- 145
WF +GD GY D CL KISP E+D V
Sbjct: 380 WFRTGDQGYLEADGYLCLTGRIKELINRGGEKISPLEIDDVLLRHPAVAEALAFAVPHAT 439
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
++ C R +A FKVP+ + I +L + TGK+QR +A
Sbjct: 440 LGEEVHAAVVLREGMSVSERELRDHCARLLADFKVPRAIHILSALP-RGATGKLQRITMA 498
Query: 184 E 184
+
Sbjct: 499 K 499
>gi|84617322|emb|CAI94682.1| putative polyketide synthase [Streptomyces achromogenes subsp.
rubradiris]
Length = 5349
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 61/211 (28%), Positives = 85/211 (40%), Gaps = 65/211 (30%)
Query: 35 RLEFGCFVTSA---ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVN 89
R EFG + A C + P G S G PV ++ I D E G D A
Sbjct: 305 REEFGVPLVDAYGSTETCGAITMNPPGGVRVDGSCGLPVPGVDVRIVDPETGRDVPAGAE 364
Query: 90 GKMCIREGPMVQ--RINNPEANKTAFQFGWFLSGDL------GYFDSQRCLNMWKI---- 137
G++ +R GP V N PEA AFQ GW+ +GDL GYF +N +
Sbjct: 365 GEVWVR-GPNVTPGYHNKPEATAAAFQDGWYRTGDLARRDAAGYFTISGRINDLIVRGGE 423
Query: 138 ------------------------------------------SPTEVDAVKEFCKRNVAS 155
S E DAV E C+R +++
Sbjct: 424 NVHPEEIEAVIRAVPGIADVGVAGRPHEVLGEVPVAYVVAGPSGVEADAVIERCRRELST 483
Query: 156 FKVPKKVFIADSLSGKPLT--GKIQRRIVAE 184
FK+P++V+ ++G P T GKIQRR++A+
Sbjct: 484 FKLPEEVY---EVAGVPRTASGKIQRRLLAD 511
>gi|367026073|ref|XP_003662321.1| hypothetical protein MYCTH_2091486 [Myceliophthora thermophila ATCC
42464]
gi|347009589|gb|AEO57076.1| hypothetical protein MYCTH_2091486 [Myceliophthora thermophila ATCC
42464]
Length = 518
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 75/185 (40%), Gaps = 56/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP G K +VG E+ I DE G G++CIR E +NNP AN AF
Sbjct: 324 LPSVGRRKPGTVGFGQGVEVVILDEAGNPVPQGKEGEICIRGENVTSGYLNNPSANAAAF 383
Query: 114 -QFGWFLSGDLGYFDS----------QRCLNMW--KISPTEVDAV--------------- 145
+ G+F +GD G D+ + +N KISP E+D V
Sbjct: 384 TKDGYFRTGDQGKKDADGYVIITGRIKELINKGGEKISPIELDNVLTRHPSVSEAVSFAI 443
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
K + +A FK+PKKV+ D + K TGKIQR
Sbjct: 444 PDEIYGQDIGVAVVLKPGVRLSEGELKSWVAEKMAKFKIPKKVYFTDVMP-KTATGKIQR 502
Query: 180 RIVAE 184
RIVAE
Sbjct: 503 RIVAE 507
>gi|171694393|ref|XP_001912121.1| hypothetical protein [Podospora anserina S mat+]
gi|170947145|emb|CAP73950.1| unnamed protein product [Podospora anserina S mat+]
Length = 515
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
+ Y P LE +T A T L P K +VG E+ I D+ G
Sbjct: 298 KTYNAPVLE-AYAMTEAAHQMTSNPLPPAK--RKPGTVGIGQGVEVVILDDAGNKVPQGT 354
Query: 89 NGKMCIR-EGPMVQRINNPEANKTAFQF-GWFLSGDLGYFDS----------QRCLNMW- 135
G++ IR E +NNPEANKTAF G+F +GD G D + +N
Sbjct: 355 EGEISIRGENVTSGYLNNPEANKTAFTASGYFRTGDQGKLDEDGYVVITGRIKELINKGG 414
Query: 136 -KISPTEVD-----------------------------------------AVKEFCKRNV 153
KISP E+D VK++ +
Sbjct: 415 EKISPIELDNVLTRNPAVSEAVSFAIPDEMYGQDIGVAIVLKPGQKLSDEDVKKWVGDKL 474
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
A FK+PKKV+ D + K TGKIQRRIVAE
Sbjct: 475 AKFKIPKKVYFTDVMP-KTATGKIQRRIVAE 504
>gi|119508831|ref|ZP_01627983.1| coenzyme a synthetase-like protein [Nodularia spumigena CCY9414]
gi|119466360|gb|EAW47245.1| coenzyme a synthetase-like protein [Nodularia spumigena CCY9414]
Length = 500
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 55/198 (27%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ 101
+T A T L PKN K SVG E+ I DE+G G++ ++ ++
Sbjct: 304 MTEAAHQMTSNPLPPKN--RKPGSVGYGHGVEVGIMDEDGKLLAQGSLGEVVVKGANVID 361
Query: 102 RI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--- 145
NNP+AN TAF GWF +GD G D L + KISP E+D +
Sbjct: 362 GYENNPQANATAFVNGWFRTGDQGKLDPDGYLYLTGRIKELINRGGEKISPLEIDDILLR 421
Query: 146 ------------------------------------KEFCKRNVASFKVPKKVFIADSLS 169
K C +++A FK+PK++ I ++L
Sbjct: 422 HPAVAEALAFAVPHKTLGEEIHAAVVLKSDTSEQELKSHCSQHLAEFKIPKQIHILEALP 481
Query: 170 GKPLTGKIQRRIVAELRK 187
+ TGK+QR +A+ K
Sbjct: 482 -RGATGKLQRLNMAKFLK 498
>gi|213402885|ref|XP_002172215.1| peroxisomal-coenzyme A synthetase [Schizosaccharomyces japonicus
yFS275]
gi|212000262|gb|EEB05922.1| peroxisomal-coenzyme A synthetase [Schizosaccharomyces japonicus
yFS275]
Length = 511
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 58/180 (32%)
Query: 61 HKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAF-QFGW 117
HK +VG P E+ I D +G G++ +R G V + +NNP AN ++F G+
Sbjct: 324 HKPGTVGLPFGVELRILDNDGNSVPQGQTGEISVR-GTNVTKGYLNNPSANASSFTSSGF 382
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------------- 145
F +GD G+ D + + KISP EVDAV
Sbjct: 383 FRTGDEGFLDKDGFVVITGRIKELVNRGGEKISPAEVDAVVVQHPKVNEAVSFAVPDEKY 442
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K+F +++FK+PKK + ++ K TGK+QRR+V E
Sbjct: 443 GQDIQCAIVVRQNETVTPEELKQFLSTRISAFKIPKKFYFTQTIP-KTATGKVQRRLVCE 501
>gi|419953122|ref|ZP_14469268.1| hypothetical protein YO5_17965 [Pseudomonas stutzeri TS44]
gi|387970398|gb|EIK54677.1| hypothetical protein YO5_17965 [Pseudomonas stutzeri TS44]
Length = 899
Score = 58.9 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 57/184 (30%)
Query: 56 PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAF 113
P G HKA +VG+P+ + I DE G A G++ + GP M + +P N+ AF
Sbjct: 342 PFAGEHKAGTVGRPLPGCVRIVDEAGTSVAAGERGEVLL-SGPTLMAGYLGDPALNQAAF 400
Query: 114 QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVD------------------ 143
+ GWF SGDLG D L + K+S EVD
Sbjct: 401 RDGWFHSGDLGSLDEDGFLRLHGRLREVINRGGEKVSLQEVDDALLRHPAVAEAAAFAVP 460
Query: 144 -----------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
A++EF + + FKVP+++ + D L + LTGK+ R
Sbjct: 461 HPRLGQDVAAAVVLRPGMQVEAEALREFLRGELVYFKVPRRIQLLDELP-RGLTGKVLRH 519
Query: 181 IVAE 184
+++
Sbjct: 520 RLSD 523
>gi|398825785|ref|ZP_10584061.1| amino acid adenylation enzyme/thioester reductase family protein
[Bradyrhizobium sp. YR681]
gi|398222551|gb|EJN08922.1| amino acid adenylation enzyme/thioester reductase family protein
[Bradyrhizobium sp. YR681]
Length = 2147
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 57/179 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG+ E+AI DE G + +G++ +R GP + R N+ A + AF+ GWF
Sbjct: 347 KIGSVGRAAGPEIAIMDETGRTLASGAHGEIMLR-GPNMSRGYYNDEAATQAAFRGGWFR 405
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEV------------------------- 142
+GDLGY D+ L + KISP EV
Sbjct: 406 TGDLGYLDADGYLFIVGRIKDVINRGGQKISPLEVEEVLLGHPAVLEAGVFAVPHPKLGE 465
Query: 143 ----------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
D +++F ++ +A++KVP + +L K +GK++R +AEL
Sbjct: 466 NVAAVVVLRPNSEATSDQLRQFARKRLAAYKVPSLIRSVAALP-KGASGKVKRNALAEL 523
>gi|410081626|ref|XP_003958392.1| hypothetical protein KAFR_0G02230 [Kazachstania africana CBS 2517]
gi|372464980|emb|CCF59257.1| hypothetical protein KAFR_0G02230 [Kazachstania africana CBS 2517]
Length = 531
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 73/182 (40%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF-- 115
G K +VG+P E+ I D+N + G++ IR E + NN +ANK F
Sbjct: 347 GKRKPGTVGQPQGVEVVILDDNDNVLEQGATGEVSIRGENVTLGYKNNDKANKENFTLRE 406
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK----------------- 146
+F +GD GYFD + L + KISP E+D+V
Sbjct: 407 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDSVMLSNPKIDEAVSFGVDDE 466
Query: 147 ------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
E+ V+ FK+P K + D L K TGKIQRR++
Sbjct: 467 MYGQVVQAAIVLKEGESMTYEELVEYMTERVSKFKIPIKAYFVDKLP-KTATGKIQRRVI 525
Query: 183 AE 184
AE
Sbjct: 526 AE 527
>gi|365898407|ref|ZP_09436367.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365420854|emb|CCE08909.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 2124
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 57/177 (32%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG+P E+ I DE G A G++ +R GP + R ++P A AF+ GWF
Sbjct: 308 KVGSVGRPAGPEIVIMDEQGRTLPAGQRGEIMLR-GPTMTRGYCDDPAATAAAFRDGWFR 366
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEV------------------------- 142
+GDLGY D+ L + K+SP EV
Sbjct: 367 TGDLGYLDADGYLFIVGRIKEIINRGGQKVSPEEVEQALLRHPAVLEAAAFAMPHPRLGE 426
Query: 143 ----------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
D +++F +A +KVP + A +L K +GK++R ++A
Sbjct: 427 AVAAAIVPKPGATVDADQLRQFAGTQLAGYKVPSVIHFAAALP-KGASGKLKRSVLA 482
>gi|423683552|ref|ZP_17658391.1| O-succinylbenzoic acid--CoA ligase [Bacillus licheniformis WX-02]
gi|383440326|gb|EID48101.1| O-succinylbenzoic acid--CoA ligase [Bacillus licheniformis WX-02]
Length = 478
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 54/171 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEA 108
+ L P+ K S GKP+ ++NG + + +G++ ++ GP V + + N A
Sbjct: 296 IATLAPEYSIEKLGSAGKPLFASSIKIEKNGTECQPGEHGEITVK-GPTVMKGYLKNEAA 354
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV----------- 145
NK +F GWF +GD+GYFD L + I P EV+AV
Sbjct: 355 NKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVLLSHPNVAEAG 414
Query: 146 ----------------------------KEFCKRNVASFKVPKKVFIADSL 168
EFCK +AS+KVPK D L
Sbjct: 415 VKGVDDKTWGKVPHAYLVADSPVDEEELSEFCKERLASYKVPKAFHFVDRL 465
>gi|52081565|ref|YP_080356.1| O-succinylbenzoic acid--CoA ligase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319647475|ref|ZP_08001696.1| 2-succinylbenzoate-CoA ligase [Bacillus sp. BT1B_CT2]
gi|404490446|ref|YP_006714552.1| O-succinylbenzoic acid--CoA ligase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|81690915|sp|Q65FT5.1|MENE_BACLD RecName: Full=2-succinylbenzoate--CoA ligase; AltName: Full=OSB-CoA
synthetase; AltName: Full=o-succinylbenzoyl-CoA
synthetase
gi|52004776|gb|AAU24718.1| O-succinylbenzoic acid-CoA ligase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52349445|gb|AAU42079.1| 2-succinylbenzoate--CoA ligase MenE [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317390521|gb|EFV71327.1| 2-succinylbenzoate-CoA ligase [Bacillus sp. BT1B_CT2]
Length = 478
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 54/171 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEA 108
+ L P+ K S GKP+ ++NG + + +G++ ++ GP V + + N A
Sbjct: 296 IATLAPEYSIEKLGSAGKPLFASSIKIEKNGTECQPGEHGEITVK-GPTVMKGYLKNEAA 354
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV----------- 145
NK +F GWF +GD+GYFD L + I P EV+AV
Sbjct: 355 NKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVLLSHPNVAEAG 414
Query: 146 ----------------------------KEFCKRNVASFKVPKKVFIADSL 168
EFCK +AS+KVPK D L
Sbjct: 415 VKGVDDKTWGKVPHAYLVADSPVDEEELSEFCKERLASYKVPKAFHFVDRL 465
>gi|421872046|ref|ZP_16303665.1| AMP-binding enzyme family protein [Brevibacillus laterosporus GI-9]
gi|372458658|emb|CCF13214.1| AMP-binding enzyme family protein [Brevibacillus laterosporus GI-9]
Length = 528
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 77/190 (40%), Gaps = 59/190 (31%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP-MVQRINNPEANK 110
VL P + K S GKP + E I DE+G + G++ R M+ + E +
Sbjct: 331 VLKPHDQLRKTGSAGKPALHVETKIVDESGNEVPIGHIGEIVHRSSHIMLGYFKDEEKTR 390
Query: 111 TAFQFGWFLSGDLGYFDSQ----------------------RCLNMW-----KISPT--- 140
+AFQ GWF SGDLG D + R + W K+S
Sbjct: 391 SAFQGGWFHSGDLGSMDEEGYITVVDRKKDMIKTGGENVASREIEEWIYQHPKVSEVAVI 450
Query: 141 -----------------------EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
E + + +FCK+ ++SFKVPK V + D L P +GKI
Sbjct: 451 GIPHPYWIEAVTAIVVANAGEEIETEELLQFCKKGLSSFKVPKFVVVTDQLPRNP-SGKI 509
Query: 178 QRRIVAELRK 187
+R ELR+
Sbjct: 510 VKR---ELRR 516
>gi|383771692|ref|YP_005450757.1| acyl-CoA synthetase [Bradyrhizobium sp. S23321]
gi|381359815|dbj|BAL76645.1| acyl-CoA synthetase [Bradyrhizobium sp. S23321]
Length = 535
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GPH K + G + +++I D+ G + AN +G++C+ GP
Sbjct: 321 VTGNITVLPAALHDPEDGPHAKIGTCGFERTGMQVSIQDDEGRELAANQSGEICVI-GPA 379
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V +NP+AN AF+ GWF +GDLG+ D + L
Sbjct: 380 VLAGYYDNPDANAKAFRNGWFRTGDLGHMDEEGFL 414
>gi|15615666|ref|NP_243970.1| long-chain fatty-acid-CoA ligase [Bacillus halodurans C-125]
gi|10175726|dbj|BAB06823.1| long-chain fatty-acid-CoA ligase [Bacillus halodurans C-125]
Length = 566
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 83/207 (40%), Gaps = 64/207 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV--RREMAIPDENGVDQKANVNGKMCIR 95
+G TS +++ T P G K S+G P M I E G N G++ +R
Sbjct: 356 YGLTETSPVAIAT-----PIWGKRKQRSIGIPWPDTDVMIISAETGEPADVNEVGELAVR 410
Query: 96 EGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDS-------QRCLNM-----WKISPTE 141
GP V + N PE F+ WFL+GD+GY D R +M + I P E
Sbjct: 411 -GPQVMKGYWNRPEETAQVFKDDWFLTGDMGYMDEDGYFYIVDRKKDMIIAGGFNIYPRE 469
Query: 142 V-------DAVKE----------------------------------FCKRNVASFKVPK 160
+ DA+KE FC++++A++KVP+
Sbjct: 470 IEEILYEHDAIKEAVVIGAPDAYRGETVKAFIVLKEGRSVSEEELDAFCRKHLAAYKVPR 529
Query: 161 KVFIADSLSGKPLTGKIQRRIVAELRK 187
+ L K L GKI RR++ E K
Sbjct: 530 LYEFREELP-KTLVGKILRRVLVEEEK 555
>gi|297583689|ref|YP_003699469.1| AMP-dependent synthetase and ligase [Bacillus selenitireducens
MLS10]
gi|297142146|gb|ADH98903.1| AMP-dependent synthetase and ligase [Bacillus selenitireducens
MLS10]
Length = 566
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 85/207 (41%), Gaps = 64/207 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV--RREMAIPDENGVDQKANVNGKMCIR 95
+G TS +++ + G K S+G P M + E G N G++CIR
Sbjct: 358 YGLTETSPVAIANLIW-----GKRKPGSIGLPWPDTEIMILSAETGEAAGPNEVGEICIR 412
Query: 96 EGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNM-----WKISPTE 141
GP V + + PEA + +F+ WFLSGD+GY D + R +M + I P E
Sbjct: 413 -GPQVMKGYWHLPEATQASFRDDWFLSGDMGYMDEEGYFYIVDRKKDMIIAGGFNIYPRE 471
Query: 142 V-------DAVKEFC----------------------------------KRNVASFKVPK 160
V DAV+E C ++ +ASFKVP+
Sbjct: 472 VEEVLYEHDAVQEVCVIGVPDPYRGETVKAFVVLKDGSKVTEDDLDEFARKQLASFKVPR 531
Query: 161 KVFIADSLSGKPLTGKIQRRIVAELRK 187
D L K + GKI RR++ + K
Sbjct: 532 LYEFRDELP-KTMVGKILRRVLVDEEK 557
>gi|45184993|ref|NP_982711.1| AAR168Cp [Ashbya gossypii ATCC 10895]
gi|44980614|gb|AAS50535.1| AAR168Cp [Ashbya gossypii ATCC 10895]
gi|374105911|gb|AEY94822.1| FAAR168Cp [Ashbya gossypii FDAG1]
Length = 531
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 74/183 (40%), Gaps = 57/183 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFG- 116
G K +VGKP E+ I +E G++ IR + NNP+AN+ F
Sbjct: 343 GKRKPGTVGKPQGVEVVILNEKDEVMPQGQQGEVSIRGSNVTPGYRNNPKANQENFTRAE 402
Query: 117 -WFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------ 145
+F +GD G+FD L + KISP E+DAV
Sbjct: 403 HYFRTGDQGFFDEDGFLVLTGRLKELINRGGEKISPLELDAVMLSHPAVNEAIAYGVANT 462
Query: 146 -----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ K VASFKVP++VF D L K TGK+QRR++
Sbjct: 463 KYGQVVHAAVVLRAGQKLDYEGLAAYMKEKVASFKVPERVFFVDKLP-KTATGKVQRRML 521
Query: 183 AEL 185
AE+
Sbjct: 522 AEV 524
>gi|339008758|ref|ZP_08641331.1| long-chain-fatty-acid--CoA ligase [Brevibacillus laterosporus LMG
15441]
gi|338774558|gb|EGP34088.1| long-chain-fatty-acid--CoA ligase [Brevibacillus laterosporus LMG
15441]
Length = 526
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 77/190 (40%), Gaps = 59/190 (31%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP-MVQRINNPEANK 110
VL P + K S GKP + E I DE+G + G++ R M+ + E +
Sbjct: 329 VLKPHDQLRKTGSAGKPALHVETKIVDESGNEVPIGHIGEIVHRSSHIMLGYFKDEEKTR 388
Query: 111 TAFQFGWFLSGDLGYFDSQ----------------------RCLNMW-----KISPT--- 140
+AFQ GWF SGDLG D + R + W K+S
Sbjct: 389 SAFQGGWFHSGDLGSMDEEGYITVVDRKKDMIKTGGENVASREIEEWMYQHPKVSEVAVI 448
Query: 141 -----------------------EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
E + + +FCK+ ++SFKVPK V + D L P +GKI
Sbjct: 449 GIPHPYWIEAVTAIVVANAGEEIETEELLQFCKKGLSSFKVPKFVVVTDQLPRNP-SGKI 507
Query: 178 QRRIVAELRK 187
+R ELR+
Sbjct: 508 VKR---ELRR 514
>gi|339628847|ref|YP_004720490.1| AMP-dependent synthetase and ligase [Sulfobacillus acidophilus TPY]
gi|339286636|gb|AEJ40747.1| AMP-dependent synthetase and ligase [Sulfobacillus acidophilus TPY]
Length = 536
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 82/209 (39%), Gaps = 59/209 (28%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKM 92
P F F VL P++ K S GKP + E I DE+G V G++
Sbjct: 322 PHTRFWNFYGQTEVAPLATVLKPEDQLRKLGSAGKPALNVETRILDEDGRAVPPGVVGEI 381
Query: 93 CIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQRCL-------NMWK-----ISP 139
C R +Q +PE AFQFGWF SGDLG D+ L +M K +S
Sbjct: 382 CHRTPHAMQGYYRDPEKTAEAFQFGWFHSGDLGVMDTDGYLTVVDRKKDMIKTGGENVSS 441
Query: 140 TEVD-------AVKE----------------------------------FCKRNVASFKV 158
EV+ AV E FC+ +A +KV
Sbjct: 442 REVEEVMYQHPAVSEVAVIGIPDAYWIEAVAAVVVTRPGMTVTDDELIRFCRDRLAGYKV 501
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAELRK 187
PK+V +L P +GKI +R ELR+
Sbjct: 502 PKQVRFMTALPKNP-SGKILKR---ELRQ 526
>gi|328875464|gb|EGG23828.1| AMP-dependent synthetase and ligase domain-containing protein
[Dictyostelium fasciculatum]
Length = 527
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 72/186 (38%), Gaps = 57/186 (30%)
Query: 54 LLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTA 112
LLP +G SVGK ++ ++NG K G++CI+ + NNP A
Sbjct: 336 LLPIDGKRIPGSVGKGTNVQVGTANDNGDLLKQGEVGEICIKGDNVFDGYHNNPTATAEN 395
Query: 113 F-QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD---------------- 143
F + GWFL+GD+G D + + KISP EVD
Sbjct: 396 FTKDGWFLTGDIGSIDEDGFITLKGRKKEIINRGGEKISPLEVDNVLLENESIAEAVCFG 455
Query: 144 --------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
VK+F + FK+PKK+F+ K TGKI
Sbjct: 456 VPDTKYGEEIWAAVIPKPSCPELTEEDVKKFLATKIVGFKIPKKIFVTQHFP-KTSTGKI 514
Query: 178 QRRIVA 183
QRR ++
Sbjct: 515 QRRNIS 520
>gi|50292177|ref|XP_448521.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527833|emb|CAG61482.1| unnamed protein product [Candida glabrata]
Length = 537
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 75/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P E+ I D+ G++CIR E NNP+AN+ F +
Sbjct: 348 GKRKPGTVGQPQGVEVRILDDKDNILPQGEIGEVCIRGENVTPGYANNPKANEENFTKRE 407
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------ 145
+F +GD GYFD++ L + KISP E+D V
Sbjct: 408 NYFRTGDQGYFDAEGFLVLTGRIKELINRGGEKISPIELDGVMLSHPKVDEAVCFGVPDE 467
Query: 146 -----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ + VA FK+P KV+ ++L K TGKIQRRI+
Sbjct: 468 MYGQVVHAAVVLKKGEKMTYDELTAYMQDKVAKFKIPAKVYFVETLP-KTATGKIQRRII 526
Query: 183 AE 184
AE
Sbjct: 527 AE 528
>gi|401839917|gb|EJT42870.1| PCS60-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 504
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 75/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P + I D+ G++ IR E + NNP+ANK F +
Sbjct: 312 GKRKPGTVGQPQGVIVVILDDKDNILPPGKVGEVSIRGENVTLGYANNPKANKENFTKRE 371
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------ 145
+F +GD GYFD + L + KISP E+D +
Sbjct: 372 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIEEAVAFGVPDD 431
Query: 146 -----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F K+++A+FKVP KV+ D L K TGKIQRRI+
Sbjct: 432 MYGQVVQAAVVLKKGEKMTYEELAGFLKKHLAAFKVPTKVYFVDKLP-KTATGKIQRRII 490
Query: 183 AE 184
AE
Sbjct: 491 AE 492
>gi|357020729|ref|ZP_09082960.1| acyl-CoA synthetase [Mycobacterium thermoresistibile ATCC 19527]
gi|356478477|gb|EHI11614.1| acyl-CoA synthetase [Mycobacterium thermoresistibile ATCC 19527]
Length = 525
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 56/187 (29%)
Query: 53 VLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
L P A + G+PV E I D++G A G++ R M+ ++P
Sbjct: 332 ALGPDEQDAHAGAAGRPVTNVETVILDDDGAVLPAGTVGEIAHRSPHLMLGYYDDPAKTA 391
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------AVKE---- 147
AF+ GWF SGDLGYFD L++ ++ EV+ AV+E
Sbjct: 392 EAFRGGWFHSGDLGYFDEHGMLHVVDRKKDMINTGGENVASREVEEVIYRHPAVEEVAVF 451
Query: 148 ------------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
C+ ++A FK PK+VF DSL P +GK+
Sbjct: 452 GLPHPTWVEAVVAAVVTRNGMTLGEEELLGHCREHLAGFKTPKQVFFVDSLPKNP-SGKL 510
Query: 178 QRRIVAE 184
+R++ E
Sbjct: 511 LKRVLRE 517
>gi|379009002|ref|YP_005258453.1| long-chain-fatty-acid--CoA ligase [Sulfobacillus acidophilus DSM
10332]
gi|361055264|gb|AEW06781.1| Long-chain-fatty-acid--CoA ligase [Sulfobacillus acidophilus DSM
10332]
Length = 522
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 82/209 (39%), Gaps = 59/209 (28%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKM 92
P F F VL P++ K S GKP + E I DE+G V G++
Sbjct: 308 PHTRFWNFYGQTEVAPLATVLKPEDQLRKLGSAGKPALNVETRILDEDGRAVPPGVVGEI 367
Query: 93 CIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQRCL-------NMWK-----ISP 139
C R +Q +PE AFQFGWF SGDLG D+ L +M K +S
Sbjct: 368 CHRTPHAMQGYYRDPEKTAEAFQFGWFHSGDLGVMDTDGYLTVVDRKKDMIKTGGENVSS 427
Query: 140 TEVD-------AVKE----------------------------------FCKRNVASFKV 158
EV+ AV E FC+ +A +KV
Sbjct: 428 REVEEVMYQHPAVSEVAVIGIPDAYWIEAVAAVVVTRPGMTVTDDELIRFCRDRLAGYKV 487
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAELRK 187
PK+V +L P +GKI +R ELR+
Sbjct: 488 PKQVRFMTALPKNP-SGKILKR---ELRQ 512
>gi|419969037|ref|ZP_14484811.1| o-succinylbenzoate--CoA ligase [Rhodococcus opacus M213]
gi|414565573|gb|EKT76492.1| o-succinylbenzoate--CoA ligase [Rhodococcus opacus M213]
Length = 490
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 18 PYTNVFLF-YKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMA 75
P ++V L ++ R P +G + +S C P +GP +A SVG P + +E+
Sbjct: 263 PASDVLLTRFETRYGFPLIEGYGLSEGTCVSTCN-----PVHGPRRAGSVGLPLIGQEIR 317
Query: 76 IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
I D+NG + +G++ +R GP + R + PE GW +GD+G+FDS L
Sbjct: 318 IVDDNGTELADGEDGEVIVR-GPNIMRGYLGRPEETARTLVDGWLHTGDVGHFDSDGYL 375
>gi|296164664|ref|ZP_06847230.1| acyl-CoA synthetase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899972|gb|EFG79412.1| acyl-CoA synthetase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 528
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 56/206 (27%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKM 92
PRL F L P A S G+PV E AI E+G A G++
Sbjct: 315 PRLRLWNFYGQTEMAPLASALGPDEQDAHAGSAGRPVANVETAILGEDGQPVAAGSIGEI 374
Query: 93 CIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDS-------QRCLNMWK-----ISP 139
R M+ +++P+ AF+ GWF SGDLG++D R +M K ++
Sbjct: 375 AHRSPHLMLGYLDDPQKTAEAFRGGWFHSGDLGHYDDNGLLHVVDRKKDMIKTGGENVAS 434
Query: 140 TEV-----------------------------------------DAVKEFCKRNVASFKV 158
EV D + C+ ++A FK
Sbjct: 435 REVEEVIYRHTGVEEVAVFGLAHPVWVEAVVAAVVLREGVSLAEDDILAHCRAHLAGFKT 494
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAE 184
PK+VF+ DSL P +GK+ +R + E
Sbjct: 495 PKRVFLVDSLPKNP-SGKLLKRTLRE 519
>gi|83590812|ref|YP_430821.1| AMP-dependent synthetase and ligase [Moorella thermoacetica ATCC
39073]
gi|83573726|gb|ABC20278.1| AMP-dependent synthetase and ligase [Moorella thermoacetica ATCC
39073]
Length = 532
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 61 HKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWF 118
K SVG PV ++ + +ENG A V G++ +R G V R +N EA +F+ GWF
Sbjct: 328 RKPGSVGLPVGNQVRVVNENGETVPAGVTGEVVVR-GENVCRGYFHNEEATAASFKGGWF 386
Query: 119 LSGDLGYFDSQRCLNMW------------KISPTEVDAVKEFCKRNVASFKVPKKVFIAD 166
+GDLGY D+ L + K SP E+D E R + ++ V + D
Sbjct: 387 YTGDLGYLDADGYLFLTGRRKELINRGGEKFSPREID---EILYR-LPEVELAAAVGVPD 442
Query: 167 SLSGKPLTGKIQRR 180
L G+ + IQ R
Sbjct: 443 PLYGEEVVAFIQLR 456
>gi|434395031|ref|YP_007129978.1| o-succinylbenzoate--CoA ligase [Gloeocapsa sp. PCC 7428]
gi|428266872|gb|AFZ32818.1| o-succinylbenzoate--CoA ligase [Gloeocapsa sp. PCC 7428]
Length = 506
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 73/180 (40%), Gaps = 54/180 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGW 117
G KA SVG E+ I DE G + G++ ++ +V NNPEAN AF GW
Sbjct: 324 GTRKAGSVGYGFGVEVGIMDEAGNLLENGQLGEVVVKGANVVDGYENNPEANAKAFTQGW 383
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------------- 145
F +GD G D L++ KISP EVD V
Sbjct: 384 FHTGDQGVIDRDGYLSLTGRIKELINRGGEKISPLEVDNVLLRHAAVAEALTFAVPHKTL 443
Query: 146 --------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
++ C +A FKVP+++ I + L + TGK+QR +A+L
Sbjct: 444 GEDIHAAVVLKDSTVSEQELRKHCSELLAEFKVPRQLHILEELP-RGATGKLQRLNMAKL 502
>gi|452976820|gb|EME76634.1| O-succinylbenzoic acid--CoA ligase [Bacillus sonorensis L12]
Length = 478
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEA 108
+ L P++ K S GKP+ ++NG KA +G++ ++ GP V + + N A
Sbjct: 296 IATLAPEHSIQKLGSAGKPLFASSIRIEKNGAAAKAGEHGEITVK-GPTVMKGYLKNKAA 354
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV 145
NK +F GWF +GD+GYFD L + I P EV+AV
Sbjct: 355 NKKSFNDGWFRTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAV 403
>gi|384218696|ref|YP_005609862.1| fatty acid CoA ligase [Bradyrhizobium japonicum USDA 6]
gi|354957595|dbj|BAL10274.1| fatty acid CoA ligase [Bradyrhizobium japonicum USDA 6]
Length = 535
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GP+ K + G + +++I D+ G + AN +G++C+ GP
Sbjct: 321 VTGNITVLPAALHDPEDGPYAKIGTCGFERTAMQVSIQDDEGRELDANQSGEICVI-GPA 379
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
V +NPEAN AF+ GWF +GDLG+ D +
Sbjct: 380 VLAGYYDNPEANAKAFRNGWFRTGDLGHMDEE 411
>gi|255719762|ref|XP_002556161.1| KLTH0H06490p [Lachancea thermotolerans]
gi|238942127|emb|CAR30299.1| KLTH0H06490p [Lachancea thermotolerans CBS 6340]
Length = 539
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 75/183 (40%), Gaps = 57/183 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P E+ I D+ G++ IR E + +N +AN+ F +
Sbjct: 351 GKRKPGTVGQPQGVEVFILDDKDNVLPQGQQGEVSIRGENVTLGYAHNEKANRENFTKRE 410
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------ 145
+F +GD GYFD + L + KISP E+D V
Sbjct: 411 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGVMLSHPKVDEAVAFGVSDE 470
Query: 146 -----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
++ + VASFKVP K+F D L K TGKIQRRI+
Sbjct: 471 KYGQIVNAAVVLKLGQKLDYKELTDYMRSKVASFKVPTKIFFVDKLP-KTATGKIQRRII 529
Query: 183 AEL 185
AE+
Sbjct: 530 AEV 532
>gi|440685045|ref|YP_007159840.1| o-succinylbenzoate--CoA ligase [Anabaena cylindrica PCC 7122]
gi|428682164|gb|AFZ60930.1| o-succinylbenzoate--CoA ligase [Anabaena cylindrica PCC 7122]
Length = 497
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 55/196 (28%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ 101
+T A + T L PK K +VG ++ I D+ G G++ ++ ++
Sbjct: 301 MTEAAHLMTTNPLPPK--IRKPGTVGYGFNVDVRIMDDEGNLLNQGSLGEVVVKGANVID 358
Query: 102 RI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--- 145
NNP+AN TAF GWF +GD G D+ L + KISP EVD V
Sbjct: 359 GYENNPDANATAFVNGWFRTGDQGIIDADGYLRLTGRIKELINRGGEKISPLEVDNVLLR 418
Query: 146 ------------------------------------KEFCKRNVASFKVPKKVFIADSLS 169
K+ C +A FKVPK++ I ++L
Sbjct: 419 HPAVAEALAFAIPHNSLGEEIHAAVVLKLEVSEKELKQHCSNTLADFKVPKQIHILEALP 478
Query: 170 GKPLTGKIQRRIVAEL 185
+ TGK+QR +A+L
Sbjct: 479 -RGATGKLQRLSMAKL 493
>gi|186684882|ref|YP_001868078.1| AMP-dependent synthetase and ligase [Nostoc punctiforme PCC 73102]
gi|186467334|gb|ACC83135.1| AMP-dependent synthetase and ligase [Nostoc punctiforme PCC 73102]
Length = 499
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 78/196 (39%), Gaps = 55/196 (28%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ 101
+T A + T L PK K SVG ++ I D G G++ ++ ++
Sbjct: 303 MTEASHLMTTNPLPPKE--RKPGSVGYGFGVDVGIMDSEGNLLSQGSLGEVVVKAPNVID 360
Query: 102 RI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--- 145
NNPEAN TAF GWF +GD G D+ L + KISP EVD V
Sbjct: 361 GYENNPEANATAFVNGWFRTGDQGTVDADGYLRLTGRIKELINRGGEKISPLEVDDVLLR 420
Query: 146 ---------------------------------KEF---CKRNVASFKVPKKVFIADSLS 169
KE C +A FKVPK++ I D L
Sbjct: 421 HPAVAEALAFAVPHKSLGEDIHAAVVLKGEVGEKELLAHCSTMLADFKVPKQIHILDQLP 480
Query: 170 GKPLTGKIQRRIVAEL 185
+ TGK+QR +A+L
Sbjct: 481 -RGATGKLQRLAMAKL 495
>gi|357029974|ref|ZP_09091944.1| coenzyme a synthetase [Mesorhizobium amorphae CCNWGS0123]
gi|355533550|gb|EHH02878.1| coenzyme a synthetase [Mesorhizobium amorphae CCNWGS0123]
Length = 473
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 67/176 (38%), Gaps = 57/176 (32%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFG 116
G K SVG ++A+ +G + G++ IR GP V NP+AN +AF G
Sbjct: 290 GQRKPGSVGAAAGPDVAVMAPDGRLLETGETGEIVIR-GPNVTAGYEKNPDANASAFAHG 348
Query: 117 WFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------- 145
WF +GD G D L + KISP EVD V
Sbjct: 349 WFHTGDQGVLDEDGYLRVTGRLKEIINRGGEKISPLEVDGVLMDHPAVAQVVTFAMPHDK 408
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ F +A FKVP+KV I D + K TGK+QR
Sbjct: 409 LGEEVAAAVVLREGLSASEADIRSFAATRLADFKVPRKVLILDEIP-KGATGKLQR 463
>gi|116873106|ref|YP_849887.1| O-succinylbenzoic acid--CoA ligase [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116741984|emb|CAK21108.1| O-succinylbenzoic acid--CoA ligase [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 469
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 66/192 (34%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQ--RI 103
+ + L PK+ +K S GK + E+ I D +G++ ++ GP + +
Sbjct: 286 TASQIVTLPPKDALNKIGSSGKALFPAEVKIAD----------DGEILLK-GPSITPGYL 334
Query: 104 NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVD-------A 144
NN EA AF GWF +GD+GY D L + + I PTE++ A
Sbjct: 335 NNEEATNAAFTDGWFKTGDIGYLDDDGFLFVLERRSDLIISGGENIYPTEIEHVITSYGA 394
Query: 145 VKE--------------------------------FCKRNVASFKVPKKVFIADSLSGKP 172
VKE C+ N+AS+K+PK++ I D L K
Sbjct: 395 VKEVAVVGKPDDKWGSVPVAYVVVDEVFKEAELFGICETNLASYKIPKQIVIVDKLP-KT 453
Query: 173 LTGKIQRRIVAE 184
+GKIQR + E
Sbjct: 454 ASGKIQRNKLKE 465
>gi|383778453|ref|YP_005463019.1| putative acyl-CoA synthetase [Actinoplanes missouriensis 431]
gi|381371685|dbj|BAL88503.1| putative acyl-CoA synthetase [Actinoplanes missouriensis 431]
Length = 496
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 66/207 (31%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR- 95
+GC +SA FV H+A SVGKP+ E+AI D +G +G++C+R
Sbjct: 297 YGCTESSA------FVSAETVPEHRAGSVGKPLPHAEVAILDPDGKPVPTGEDGEICVRG 350
Query: 96 EGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD 143
G M+ N+PE + GW +GD+G FD+ L + + + P +V+
Sbjct: 351 PGVMLGYWNDPELTARTVRDGWLHTGDVGRFDADGFLYVVDRLKDLIIRGGFNVFPRDVE 410
Query: 144 AV-----------------------------------------KEFCKRNVASFKVPKKV 162
V EF K +A +K P++V
Sbjct: 411 DVLLEHPAVQIAACVGRPDPSSGEEVVAVVQLAPGQQVSGPELVEFAKERMAKYKYPREV 470
Query: 163 FIADSLSGKPLT--GKIQRRIVAELRK 187
+ DS+ PLT GKI R+ V + K
Sbjct: 471 IVLDSV---PLTSVGKINRKAVRAMVK 494
>gi|13475813|ref|NP_107383.1| coenzyme a synthetase [Mesorhizobium loti MAFF303099]
gi|14026572|dbj|BAB53169.1| mll6983 [Mesorhizobium loti MAFF303099]
Length = 508
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 73/201 (36%), Gaps = 61/201 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
FGC V + + + N G K SVG E+A+ +G G++
Sbjct: 301 FGCPVIESYGMTEAAHQMASNRLPPGLRKPGSVGAGAGPEVAVMAPDGRLLTTGETGEIV 360
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISP 139
IR GP V NP+AN TAF GWF +GD G D L + KISP
Sbjct: 361 IR-GPNVTAGYEKNPDANATAFAHGWFHTGDQGVLDEDGYLRVTGRLKEIINRGGEKISP 419
Query: 140 TEVDAV-----------------------------------------KEFCKRNVASFKV 158
EVD V + +A FKV
Sbjct: 420 LEVDDVLMDHPAVAQVVTFAMPHDKLGEEVAAAVVLREGMIATESDIRSHAATRLADFKV 479
Query: 159 PKKVFIADSLSGKPLTGKIQR 179
P+K+ I D + K TGK+QR
Sbjct: 480 PRKILILDEIP-KGATGKLQR 499
>gi|389863889|ref|YP_006366129.1| long-chain-fatty-acid--CoA ligase [Modestobacter marinus]
gi|388486092|emb|CCH87642.1| Long-chain-fatty-acid--CoA ligase [Modestobacter marinus]
Length = 501
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 59/203 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPH---KASSVGKPVRR-EMAIPDENGVDQKANVNGKMC 93
FGC V + + N PH K ++G P+R E+ + D+ G D G++
Sbjct: 291 FGCIVLEGYGLSETSPVASFNHPHAERKPGTIGTPIRGVELRLVDDEGRDVAPGEVGEIA 350
Query: 94 IR-EGPMVQRINNPEANKTAFQFGWFLSGDL------GYF---DSQRCLNM---WKISPT 140
IR E M PE A GWF SGDL GY+ D ++ + + + + P
Sbjct: 351 IRGENVMKGYWQRPEDTAQAIPDGWFRSGDLARVDEDGYYAIVDRKKEMIIRGGYNVYPR 410
Query: 141 EV-----------------------------------------DAVKEFCKRNVASFKVP 159
E+ D ++EF K VA++K P
Sbjct: 411 EIEEALYEHPAVAEVACIGIAHPDLGEEVAVAVALKPGASADPDELREFVKARVAAYKYP 470
Query: 160 KKVFIADSLSGKPLTGKIQRRIV 182
+ V++ D+L P TGKI RR V
Sbjct: 471 RHVWLVDALPKGP-TGKILRRAV 492
>gi|398816440|ref|ZP_10575089.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Brevibacillus
sp. BC25]
gi|398032461|gb|EJL25798.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Brevibacillus
sp. BC25]
Length = 521
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 79/208 (37%), Gaps = 59/208 (28%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKM 92
P +F F VL PK+ KA S GKP + E I D++G + G++
Sbjct: 310 PNAQFYNFYGQTEVAPLATVLQPKDQMRKAGSAGKPALNVETKIVDDDGNEVLRGSVGEI 369
Query: 93 CIREG-PMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------------- 134
R M+ + E + AFQ GWF SGDLG D + + +
Sbjct: 370 VHRTSHAMLGYFRDEEKTQAAFQGGWFHSGDLGIMDDEGYITVVDRKKDMIKSGGENVAS 429
Query: 135 -------------------------WKISPTEV-----------DAVKEFCKRNVASFKV 158
W + T V D + FCK ++SFK
Sbjct: 430 REVEELIYQHPKVSEVAVIGVPHPYWIEAVTAVVVPKAGELLTADEMLVFCKDRLSSFKA 489
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAELR 186
PK V IAD+L P +GKI +R ELR
Sbjct: 490 PKYVVIADNLPRNP-SGKILKR---ELR 513
>gi|453080579|gb|EMF08630.1| coenzyme A synthetase [Mycosphaerella populorum SO2202]
Length = 516
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 56/185 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAF 113
LP G K SVG E+AI D G G++ I+ + +NN +AN+ AF
Sbjct: 321 LPSKGKRKPGSVGIGQGVEVAILDAEGHKVPQGKEGEISIKGSNVTAGYLNNEKANQEAF 380
Query: 114 -QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVD----------------- 143
G+F +GD G+ D++ + + KISP E+D
Sbjct: 381 TSTGYFRTGDQGFLDAENYVYITGRIKELINKGGEKISPIELDNTLAQQTKIAEAVSFAI 440
Query: 144 ------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ E+ K VA FKVPKKVF ++ K TGKIQR
Sbjct: 441 PDELYGQDVGVAVVVKEGESLTQEELIEYMKSKVAKFKVPKKVFFVKAMP-KTATGKIQR 499
Query: 180 RIVAE 184
R +A+
Sbjct: 500 RNIAD 504
>gi|418422639|ref|ZP_12995810.1| acyl-CoA synthetase [Mycobacterium abscessus subsp. bolletii BD]
gi|363993712|gb|EHM14934.1| acyl-CoA synthetase [Mycobacterium abscessus subsp. bolletii BD]
Length = 529
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKM 92
P L+ F L P++ A + G+PV E AI D+ A + G++
Sbjct: 314 PHLQLWNFYGQTEMAPLASALGPEDQDAHAGAAGRPVVNVETAILDDTDTPVLAGIVGEI 373
Query: 93 CIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK- 150
R M+ +++PE AF+ GWF SGDLGY+D L++ VD K+ K
Sbjct: 374 AHRSPHLMLGYVDDPERTAEAFRGGWFHSGDLGYYDEHGLLHV-------VDRKKDMIKT 426
Query: 151 --RNVASFKVPKKVF 163
NVAS +V + ++
Sbjct: 427 GGENVASREVEEILY 441
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 140 TEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
TE + V C+ ++A FK PK+VF+ DSL P +GK+ +R++
Sbjct: 476 TEAEIVAH-CRSHLAGFKTPKRVFLVDSLPKNP-SGKLLKRLL 516
>gi|374573348|ref|ZP_09646444.1| amino acid adenylation enzyme/thioester reductase family protein
[Bradyrhizobium sp. WSM471]
gi|374421669|gb|EHR01202.1| amino acid adenylation enzyme/thioester reductase family protein
[Bradyrhizobium sp. WSM471]
Length = 2149
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 57/179 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG+ E+AI DE G + G++ +R GP + R N+ A + AF+ GWF
Sbjct: 345 KVGSVGRAAGPEIAIMDEAGRALASGEPGEIMLR-GPNMSRGYYNDEAATQAAFRNGWFR 403
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEV------------------------- 142
+GDLGY D+ L + KISP EV
Sbjct: 404 TGDLGYLDADGYLFIVGRIKDVINRGGQKISPLEVEEVLLSHPAVLEAGVFAVPHQKLGE 463
Query: 143 ----------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
D +++F ++ +A++KVP + +L K +GK++R +AEL
Sbjct: 464 NVAAIVVLRPNSEATSDQLRQFARKRLAAYKVPSLIRSVATLP-KGASGKVKRNALAEL 521
>gi|381206727|ref|ZP_09913798.1| acyl-coenzyme A synthetase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 499
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 72/200 (36%), Gaps = 59/200 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKN----GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
FGC V A + + N G KA VG E+ I D +G G++C
Sbjct: 290 FGCPVIEAYGMTEAAHQMTSNPLELGKQKAGFVGIVTSPEVCIMDSSGNQLLPGDEGEVC 349
Query: 94 IR-EGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPT 140
IR E NN AN +F+ GWF +GD G FD L + KISP
Sbjct: 350 IRGENVTPGYENNDAANAVSFKDGWFRTGDQGLFDQDGYLKITGRLKEIINRGGEKISPL 409
Query: 141 EVDAV-----------------------------------------KEFCKRNVASFKVP 159
EVD V ++F +A FK+P
Sbjct: 410 EVDNVLMEHPDIQQVVTFAVADKMLGEEIGTAVILVNGKSMDAGKIRKFAAEQLAKFKIP 469
Query: 160 KKVFIADSLSGKPLTGKIQR 179
K + D + K TGK+QR
Sbjct: 470 KHIVFVDEIP-KGATGKLQR 488
>gi|217976303|ref|YP_002360450.1| AMP-dependent synthetase and ligase [Methylocella silvestris BL2]
gi|217501679|gb|ACK49088.1| AMP-dependent synthetase and ligase [Methylocella silvestris BL2]
Length = 512
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 70/179 (39%), Gaps = 57/179 (31%)
Query: 56 PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQ 114
P +G K SVG E+AI DE G +A G++ IR E NNP+AN AF
Sbjct: 326 PLHGVRKPGSVGLAAGPEVAIMDETGGFLRAGEIGEIVIRGENVTAGYENNPKANAEAFT 385
Query: 115 FGWFLSGDLGYFDSQRCLNMW------------KISPTEVD------------------- 143
GWF +GD G D + + K+SP EVD
Sbjct: 386 NGWFRTGDQGVMDEGGYVTLTGRLKEIINRGGEKVSPREVDEALMDHPAVLQVVTFAVPH 445
Query: 144 ----------------------AVKEFCKRNVASFKVPKKV-FIADSLSGKPLTGKIQR 179
++ F +A+FK P+K+ F+A+ G TGK+QR
Sbjct: 446 DKLGEDVAAAVVLREGTTATEQELRAFLSERIAAFKTPRKILFLAEIPKGA--TGKLQR 502
>gi|290956773|ref|YP_003487955.1| AMP-binding synthetase [Streptomyces scabiei 87.22]
gi|395771045|ref|ZP_10451560.1| AMP-binding synthetase [Streptomyces acidiscabies 84-104]
gi|260646299|emb|CBG69394.1| putative AMP-binding synthetase [Streptomyces scabiei 87.22]
Length = 497
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 61/202 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGP---HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMC 93
FGC V + ++ N P KA S+G PVR E+ + D+ G+D G++
Sbjct: 291 FGCMVLEGFGMSETSPVVSFNHPDRPRKAGSIGTPVRDVEVRLLDDTGLDVAPGEVGELA 350
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISP 139
+R GP + + N PE A GW +GDL D L + + + P
Sbjct: 351 VR-GPNLMKGYWNRPEETAAAVPDGWLRTGDLARQDEDGYLYIVDRKKDLIIRGGYNVYP 409
Query: 140 TEVDAV-----------------------------------------KEFCKRNVASFKV 158
E++ V +EF + VA++K
Sbjct: 410 REIEEVLHEHPAVALAAVVGLPDEHLGEEVAAAVVLRPGADATVEELQEFVRERVAAYKY 469
Query: 159 PKKVFIADSLSGKPLTGKIQRR 180
P++V++AD+L P +GKI +R
Sbjct: 470 PRRVWLADALPMGP-SGKILKR 490
>gi|367039111|ref|XP_003649936.1| hypothetical protein THITE_2109085 [Thielavia terrestris NRRL 8126]
gi|346997197|gb|AEO63600.1| hypothetical protein THITE_2109085 [Thielavia terrestris NRRL 8126]
Length = 518
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 77/186 (41%), Gaps = 58/186 (31%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP G K +VG E+ I D+ G G++CIR G V R +NNPEAN+ A
Sbjct: 324 LPSVGKRKPGTVGVGQGVEVVILDDAGKPVPQGREGEICIR-GANVTRGYLNNPEANRAA 382
Query: 113 FQF-GWFLSGDLGYFDS----------QRCLNMW--KISPTEVDAV-------------- 145
F G+F +GD G D + +N KISP E+D V
Sbjct: 383 FTADGYFRTGDQGRKDEDGYVVITGRIKELINKGGEKISPIELDNVLTRHPAVSEAVSFA 442
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
K + +A FKVPKKV+ D + K TGKIQ
Sbjct: 443 VPDDMYGQDIGVAVVLKPGHRLRDDELKAWVADKLAKFKVPKKVYFTDVMP-KTATGKIQ 501
Query: 179 RRIVAE 184
RRIVAE
Sbjct: 502 RRIVAE 507
>gi|254387334|ref|ZP_05002588.1| acyl-CoA synthetase [Streptomyces sp. Mg1]
gi|194346133|gb|EDX27099.1| acyl-CoA synthetase [Streptomyces sp. Mg1]
Length = 505
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
R LP + CF S I VL P + S G+PVR E + DE+G +
Sbjct: 291 RARLPGLGFYNCFGQSEIGPLAT-VLGPDEHEGRMESCGRPVRHVEARVVDEDGAEVPDG 349
Query: 88 VNGKMCIREGPM-VQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + N+PEA K AF+ GWF SGDL D+Q T VD VK
Sbjct: 350 TAGEVVYRSPQLCLGYWNDPEATKKAFRDGWFRSGDLAVRDAQGYF-------TVVDRVK 402
Query: 147 EFCKRN---VASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ VAS +V ++ ++ + G R +
Sbjct: 403 DVINSGGVLVASRQVEDALYTHPGVAEAAVVGLPDERWI 441
>gi|254561330|ref|YP_003068425.1| acyl-coenzyme A synthetase [Methylobacterium extorquens DM4]
gi|254268608|emb|CAX24567.1| putative acyl-coenzyme A synthetase [Methylobacterium extorquens
DM4]
Length = 528
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 56/180 (31%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGW 117
PH A SVG E+A+ D +G A G++ IR + M NN +AN AF + GW
Sbjct: 345 PHYAGSVGLAAGPEIAVVDLDGEPLPAGETGEIVIRGDNVMKGYENNEKANAEAFTEQGW 404
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDA--------------------- 144
F +GD G + L++ KISP EVD
Sbjct: 405 FRTGDQGVLSPEGYLSITGRLKEIINRGGEKISPREVDEILMDHPAVSQCVTFAVPHDKL 464
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++ F +A+FKVP K+ I D + K TGK+QR +A+
Sbjct: 465 GEDVAAAIVLREGVEAVEKDIRSFASERLAAFKVPAKILILDEIP-KGATGKLQRIGLAQ 523
>gi|389872293|ref|YP_006379712.1| acyl-CoA synthetase [Advenella kashmirensis WT001]
gi|388537542|gb|AFK62730.1| acyl-CoA synthetase [Advenella kashmirensis WT001]
Length = 536
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
E+AI DE+G + G++C+R GP V NN AN+ AF++GWF +GDLG+ D Q
Sbjct: 364 EIAILDEDGRRCNIGITGEICVR-GPAVCMGYDNNAAANEKAFRYGWFHTGDLGHLDEQ 421
>gi|407916461|gb|EKG09829.1| AMP-dependent synthetase/ligase [Macrophomina phaseolina MS6]
Length = 534
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 70/181 (38%), Gaps = 57/181 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFG 116
G SVG P E+ I D+ G A G++CIR + + +P N + F
Sbjct: 323 GGRTPGSVGLPQGVELHIKDDAGTTLSAGSIGEVCIRGANVTSGYLVADPAVNASTFTAD 382
Query: 117 WFL-SGDLGYFDSQRCLNMW------------KISPTEVD-------------------- 143
FL +GD G D + + + KISP E+D
Sbjct: 383 GFLRTGDQGVLDEKGYVRLTGRIKELINKGGEKISPIELDNLLLQHPDVGEAVSFAVDDA 442
Query: 144 ---------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
VKEF + VA FKVPKKV+ +++ K TGKIQRR V
Sbjct: 443 LYGQDVGVAVVLKRGGRLTEEDVKEFFRARVAKFKVPKKVYFTETMP-KTATGKIQRRQV 501
Query: 183 A 183
A
Sbjct: 502 A 502
>gi|365924898|ref|ZP_09447661.1| acetyl-CoA synthetase [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 506
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
P LE G +T + S CT L P + K SVGKP ++ I D + ++G++
Sbjct: 298 PLLE-GYGMTESCSQCT---LNPLDNI-KIGSVGKPYHTDVTIIDGDDFTDAPGIHGEIA 352
Query: 94 IREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW--------------KISP 139
IR ++ +P + +F+ GWFL+GDLGYFD + L W K+SP
Sbjct: 353 IRGDHVITSYLDPHPD--SFKDGWFLTGDLGYFDEEGYL--WLEGRSKDVINHGGEKVSP 408
Query: 140 TEVDAV---KEFCKRNVASFKVPKKVF-------IADSLSGKPLTGKIQRRIV 182
+ V+ V +F K+ VA +P +++ + D K ++RI+
Sbjct: 409 SVVEDVLGNLDFIKQ-VAVVGLPDELYGEIVAAAVIDDTKDSETLAKHRQRII 460
>gi|319652352|ref|ZP_08006469.1| feruloyl-CoA synthetase [Bacillus sp. 2_A_57_CT2]
gi|317396013|gb|EFV76734.1| feruloyl-CoA synthetase [Bacillus sp. 2_A_57_CT2]
Length = 493
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 71/213 (33%)
Query: 23 FLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENG 81
FLF +G FG TS T+F+L ++ P K S+GKPV E + D +G
Sbjct: 289 FLFGQG---------FGMTETSP----TLFMLTKEDAPRKKGSIGKPVLFSEYKLIDSDG 335
Query: 82 VDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----- 134
+ + G++ +R GP M + N P+A K + + GW L+GDL D + L +
Sbjct: 336 KEVEKGEVGELAVR-GPNIMKEYWNRPDATKDSLKDGWLLTGDLAKTDDEGFLYIVGRKK 394
Query: 135 -------WKISPTEVDA-----------------------------------------VK 146
I P EV+ V
Sbjct: 395 EMIISGGENIYPLEVEQVISQLRDVVEVAVVGNADPLWGEVPEAFIVKRNGSALTEGDVI 454
Query: 147 EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
++C+ +A +K+PKKV + L K TGKIQ+
Sbjct: 455 QYCQGKLAKYKIPKKVTFLNGLP-KNATGKIQK 486
>gi|84489258|ref|YP_447490.1| acyl-CoA synthetase [Methanosphaera stadtmanae DSM 3091]
gi|84372577|gb|ABC56847.1| predicted acyl-CoA synthetase [Methanosphaera stadtmanae DSM 3091]
Length = 489
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 74/188 (39%), Gaps = 58/188 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENG--VDQKANVNGKMCI 94
+G T I TV + SVG PV E+ I D ++ N G++ +
Sbjct: 285 YGASETIVIGTGTVIRPEDYASADRFESVGHPVCFSEVKIVDTENPKIEMDLNCPGEIAL 344
Query: 95 REGPMVQR--INNPEANKTAF-QFGWFLSGDLGYFDSQR------------CLNMWKISP 139
R GP + + N PEAN+ F GWFL+GD+GY D + ++ WKI P
Sbjct: 345 R-GPSIAKGYWNKPEANEKVFLDNGWFLTGDIGYLDDDKRLFITDRKKDMIIMSGWKIYP 403
Query: 140 TEVDAVK---------------------------------------EFCKRNVASFKVPK 160
TEV+ V EF ++N+A +K+P+
Sbjct: 404 TEVEEVLIKYDALDEIAVFSLPHEHRGEIPVAAVIWKDKEDEKGLIEFAQKNLARYKIPR 463
Query: 161 KVFIADSL 168
K+F L
Sbjct: 464 KIFSVKEL 471
>gi|115522872|ref|YP_779783.1| acyl-CoA synthetase [Rhodopseudomonas palustris BisA53]
gi|115516819|gb|ABJ04803.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
BisA53]
Length = 526
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP-MVQRINNPE 107
T +L P++ KA S GKPV E + D++G + G++ R M+ ++ E
Sbjct: 327 TATMLGPEDQIRKAGSAGKPVLNVETRVVDDDGRELPPGEIGEIVHRSPQLMIGYFHDEE 386
Query: 108 ANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFI 164
AF+ GWF SGDLG FD + L T VD K+ K NVAS +V + ++
Sbjct: 387 RTAQAFEGGWFHSGDLGVFDDEGYL-------TVVDRKKDMIKSGGENVASREVEETIYQ 439
Query: 165 ADSLSGKPLTG 175
D +S + G
Sbjct: 440 LDGVSEVAVIG 450
>gi|116197669|ref|XP_001224646.1| hypothetical protein CHGG_06990 [Chaetomium globosum CBS 148.51]
gi|88178269|gb|EAQ85737.1| hypothetical protein CHGG_06990 [Chaetomium globosum CBS 148.51]
Length = 494
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 67/167 (40%), Gaps = 56/167 (33%)
Query: 73 EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF-GWFLSGDLGYFDSQR 130
E+ I D G + G++CIR E +NN EAN+T++ G+F +GD G D
Sbjct: 318 EVVILDGAGAAVRPGAEGEICIRGENVTGGYLNNAEANRTSYTAEGYFRTGDQGRKDPDG 377
Query: 131 CLNMW------------KISPTEVDAV--------------------------------- 145
L + KISP E+D V
Sbjct: 378 YLIITGRIKELINKGGEKISPIELDNVLTRHPAVSEAVSFAIPDEMFGQEIGVAVVLKPG 437
Query: 146 --------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K + +A FKVPKKV+ D + K TGKIQRRIVAE
Sbjct: 438 VRLAEAELKAWVAEKLAKFKVPKKVYFTDVMP-KTATGKIQRRIVAE 483
>gi|383774019|ref|YP_005453085.1| hypothetical protein S23_57820 [Bradyrhizobium sp. S23321]
gi|381362143|dbj|BAL78973.1| hypothetical protein S23_57820 [Bradyrhizobium sp. S23321]
Length = 2149
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 57/179 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG+ E+AI DE G + +G++ +R GP + R N+ A + AF+ GWF
Sbjct: 347 KVGSVGRAAGPEIAIMDETGRALASGEHGEIMLR-GPNMTRGYYNDDAATQAAFRGGWFR 405
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEV------------------------- 142
+GDLGY D+ L + KISP EV
Sbjct: 406 TGDLGYLDADGYLYIVGRIKDVINRGGQKISPLEVEEVLLSHPAVLEAGVFAVPHPKLGE 465
Query: 143 ----------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
D +++F ++ +A++KVP + +L K +GK++R + +L
Sbjct: 466 NIAAVVVLRPNSEATSDQLRQFARKRLAAYKVPSLIRAVAALP-KGASGKVKRNALVDL 523
>gi|330936519|ref|XP_003305422.1| hypothetical protein PTT_18259 [Pyrenophora teres f. teres 0-1]
gi|311317563|gb|EFQ86482.1| hypothetical protein PTT_18259 [Pyrenophora teres f. teres 0-1]
Length = 514
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 75/182 (41%), Gaps = 58/182 (31%)
Query: 60 PH--KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QF 115
PH K SVG E+ I DE G + ++CI+ E +NNP AN ++F +
Sbjct: 322 PHQRKPGSVGVGQGVEVKILDEAGNEVAQGKEAEICIKGENVTKGYLNNPAANASSFTKD 381
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------ 145
G+F +GD G DS+ + + KISP E+D V
Sbjct: 382 GFFRTGDQGKVDSEGYVIITGRIKELINKGGEKISPIELDNVIAQHPAVSEAVSFAMEDE 441
Query: 146 -----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
K + VA FK+PKK+F D + K TGKIQRR+V
Sbjct: 442 MYGQDVGLAVVVKEGQALTAGELKTWLTDRVAKFKLPKKIFFTDIMP-KTATGKIQRRLV 500
Query: 183 AE 184
AE
Sbjct: 501 AE 502
>gi|407983365|ref|ZP_11164020.1| AMP-binding enzyme family protein [Mycobacterium hassiacum DSM
44199]
gi|407375087|gb|EKF24048.1| AMP-binding enzyme family protein [Mycobacterium hassiacum DSM
44199]
Length = 364
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 79/206 (38%), Gaps = 56/206 (27%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKM 92
P L F VL P A + G+P V E AI D+N V G++
Sbjct: 144 PNLRLWNFYGQTEMAPLASVLGPDEQEAHAGAAGRPAVNVETAILDDNDNPVPPGVVGEI 203
Query: 93 CIREGP-MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISP 139
R M+ +++P AF+ GWF SGDLGY+D L++ ++
Sbjct: 204 AHRSPHLMLGYLDDPARTAEAFRGGWFHSGDLGYYDEHGLLHVVDRKKDMINTGGENVAS 263
Query: 140 TEVD-------AVKE----------------------------------FCKRNVASFKV 158
EV+ AV+E C+ ++A FK
Sbjct: 264 REVEEVIYRHPAVEEVAVFGVPHPTWVEAVTAAVVVRNGMRLEAGELIAHCREHLAGFKT 323
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAE 184
PK+V DSL P +GK+ +R++ E
Sbjct: 324 PKQVHFVDSLPKNP-SGKLLKRVLRE 348
>gi|432335294|ref|ZP_19586889.1| long-chain-fatty-acid--CoA ligase [Rhodococcus wratislaviensis IFP
2016]
gi|430777779|gb|ELB93107.1| long-chain-fatty-acid--CoA ligase [Rhodococcus wratislaviensis IFP
2016]
Length = 527
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 50 TVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPE 107
T + P++ +VG PV + AI ++G A G++ R M + ++NPE
Sbjct: 329 TTTLFRPEHQLTHTGAVGTPVIGVQAAIMGQDGGLLPAGGEGEIVYRSPHTMTEYLDNPE 388
Query: 108 ANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFI 164
A AF GWF SGD+G FD L W D K+ K NV+S +V + ++
Sbjct: 389 ATAEAFAHGWFHSGDIGRFDDDGIL--WF-----TDRFKDVIKTGGENVSSLEVERAIYQ 441
Query: 165 ADSL 168
AD L
Sbjct: 442 ADPL 445
>gi|383757516|ref|YP_005436501.1| AMP-dependent synthetase and ligase [Rubrivivax gelatinosus IL144]
gi|381378185|dbj|BAL95002.1| AMP-dependent synthetase and ligase [Rubrivivax gelatinosus IL144]
Length = 509
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 59/174 (33%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG E+AI DE+G G++ IR GP V +NP+AN AF GWF
Sbjct: 328 KPGSVGPAAGPEIAIMDEHGTLLPRGAVGEIVIR-GPNVTAGYESNPKANAEAFTNGWFR 386
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEVDAV---------------------- 145
+GD G D++ + + KISP E+D +
Sbjct: 387 TGDQGTLDAEGYVTITGRLKEIINRGGEKISPREIDEILMDHPAVAQVVCFGMPHPKLGE 446
Query: 146 -------------------KEFCKRNVASFKVPKKV-FIADSLSGKPLTGKIQR 179
++F VA FKVPK++ F+A+ G TGK+QR
Sbjct: 447 EVAAAVVPREGQQPSERELQDFVAARVADFKVPKRILFMAEIPKGA--TGKLQR 498
>gi|226311685|ref|YP_002771579.1| acyl-CoA synthetase [Brevibacillus brevis NBRC 100599]
gi|226094633|dbj|BAH43075.1| long-chain-fatty-acid--CoA ligase [Brevibacillus brevis NBRC
100599]
Length = 521
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 78/208 (37%), Gaps = 59/208 (28%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKM 92
P +F F VL PK+ K S GKP + E I D++G + G++
Sbjct: 310 PNAQFYNFYGQTEVAPLATVLQPKDQMRKPGSAGKPALNVETKIVDDDGNEVPRGSVGEI 369
Query: 93 CIREG-PMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------------- 134
R M+ + E + AFQ GWF SGDLG D + + +
Sbjct: 370 VHRTSHAMLGYFRDEEKTQAAFQGGWFHSGDLGIMDDEGYITVVDRKKDMIKSGGENVAS 429
Query: 135 -------------------------WKISPTEV-----------DAVKEFCKRNVASFKV 158
W + T V D + FCK ++SFK
Sbjct: 430 REVEELIYQHPKVSEVAVIGVPHPFWIEAVTAVVVPKAGELLTADEMLAFCKDRLSSFKA 489
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAELR 186
PK V IAD+L P +GKI +R ELR
Sbjct: 490 PKYVVIADNLPRNP-SGKILKR---ELR 513
>gi|433542832|ref|ZP_20499253.1| acyl-CoA synthetase [Brevibacillus agri BAB-2500]
gi|432185838|gb|ELK43318.1| acyl-CoA synthetase [Brevibacillus agri BAB-2500]
Length = 522
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREG-PMVQRINNPEANK 110
VL PK+ KA S GKP + E I D+ GV+ G++ R M+ + E +
Sbjct: 329 VLPPKDQIRKAGSAGKPALNVETKIVDDEGVEVPRGCIGEIVHRTSHAMIGYFRDEEKTR 388
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AFQ GWF SGDLG D + + T VD K+ K NVAS +V + ++
Sbjct: 389 AAFQGGWFHSGDLGIMDEEGYI-------TVVDRKKDMIKSGGENVASREVEELIY 437
Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 148 FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
FCK ++ASFK PK VFI D+L P +GKI +R ELR
Sbjct: 479 FCKEHLASFKAPKYVFITDTLPRNP-SGKILKR---ELR 513
>gi|399053328|ref|ZP_10742180.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Brevibacillus
sp. CF112]
gi|398048693|gb|EJL41159.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Brevibacillus
sp. CF112]
Length = 522
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREG-PMVQRINNPEANK 110
VL PK+ KA S GKP + E I D+ GV+ G++ R M+ + E +
Sbjct: 329 VLPPKDQIRKAGSAGKPALNVETKIVDDEGVEVPRGCIGEIVHRTSHAMIGYFRDEEKTR 388
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AFQ GWF SGDLG D + + T VD K+ K NVAS +V + ++
Sbjct: 389 AAFQGGWFHSGDLGIMDEEGYI-------TVVDRKKDMIKSGGENVASREVEELIY 437
Score = 39.7 bits (91), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 148 FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
FCK +ASFK PK VFI D+L P +GKI +R ELR
Sbjct: 479 FCKERLASFKAPKYVFITDTLPRNP-SGKILKR---ELR 513
>gi|240138730|ref|YP_002963202.1| acyl-coenzyme A synthetase [Methylobacterium extorquens AM1]
gi|240008699|gb|ACS39925.1| putative acyl-coenzyme A synthetase [Methylobacterium extorquens
AM1]
Length = 528
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 56/180 (31%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGW 117
PH A SVG E+A+ D +G A G++ IR + M NN +AN AF + GW
Sbjct: 345 PHYAGSVGLAAGPEIAVVDLDGEPLPAGETGEIVIRGDNVMKGYENNEKANAEAFTKQGW 404
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDA--------------------- 144
F +GD G + L++ KISP EVD
Sbjct: 405 FRTGDQGVLSPEGYLSITGRLKEIINRGGEKISPREVDEILMDHPAVSQCVTFAVPHDKL 464
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++ F +A+FKVP K+ I D + K TGK+QR +A+
Sbjct: 465 GEDVAAAIVLREGVEAVEKDIRSFASERLAAFKVPAKILILDEIP-KGATGKLQRIGLAQ 523
>gi|418059850|ref|ZP_12697786.1| o-succinylbenzoate--CoA ligase [Methylobacterium extorquens DSM
13060]
gi|373566620|gb|EHP92613.1| o-succinylbenzoate--CoA ligase [Methylobacterium extorquens DSM
13060]
Length = 526
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 56/180 (31%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGW 117
PH A SVG E+A+ D +G A G++ IR + M NN +AN AF + GW
Sbjct: 343 PHYAGSVGLAAGPEIAVVDLDGEPLPAGETGEIVIRGDNVMKGYENNEKANAEAFTKQGW 402
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDA--------------------- 144
F +GD G + L++ KISP EVD
Sbjct: 403 FRTGDQGVLSPEGYLSITGRLKEIINRGGEKISPREVDEILMDHPAVSQCVTFAVPHDKL 462
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++ F +A+FKVP K+ I D + K TGK+QR +A+
Sbjct: 463 GEDVAAAIVLREGVEAVEKDIRSFASERLAAFKVPAKILILDEIP-KGATGKLQRIGLAQ 521
>gi|378729167|gb|EHY55626.1| hypothetical protein HMPREF1120_03756 [Exophiala dermatitidis
NIH/UT8656]
Length = 517
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 81/211 (38%), Gaps = 58/211 (27%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
VY P LE +A + + LP G K SVG E+ I DE G +
Sbjct: 298 EVYGAPVLEAYAMTEAAHQMTSN--PLPHRGTRKPGSVGIGQGVEVKILDEQGDELPQGK 355
Query: 89 NGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGDLGYFDSQRCLNMW----------- 135
G++CIR E +NN +ANK AF + G+F +GD G D + +
Sbjct: 356 EGEICIRGENVTKGYLNNEKANKEAFTKGGFFRTGDQGKKDGDGYVYITGRIKELINRGG 415
Query: 136 -KISPTEVD-----------------------------------------AVKEFCKRNV 153
KISP E+D A+ E+
Sbjct: 416 EKISPIELDHVIATHPGVSEAVSFAIPSELYGQEVGVAIVPKPGKNVTEEAITEYVASKT 475
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
A FK P +V+I + K TGKIQRR VAE
Sbjct: 476 AKFKKPSRVWILKEIP-KTATGKIQRRKVAE 505
>gi|359767449|ref|ZP_09271237.1| putative long-chain-fatty-acid--CoA ligase [Gordonia
polyisoprenivorans NBRC 16320]
gi|359315167|dbj|GAB24070.1| putative long-chain-fatty-acid--CoA ligase [Gordonia
polyisoprenivorans NBRC 16320]
Length = 526
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 50 TVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
T + P+N +VG PV ++ I D+ G +G++ R GP M + + P
Sbjct: 329 TATIFRPENQLTHPGAVGTPVINVQVEIHDDAGRALPTGTDGEIVYR-GPHLMTEYLGKP 387
Query: 107 EANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIAD 166
+ AF+ GWF SGD+G+FDS L W + D +K NV+S +V K ++ A+
Sbjct: 388 DDTDEAFRHGWFHSGDVGHFDSDGIL--W-FTDRHKDVIKT-GGENVSSLEVEKAMYSAE 443
>gi|333919861|ref|YP_004493442.1| o-succinylbenzoate--CoA ligase [Amycolicicoccus subflavus DQS3-9A1]
gi|333482082|gb|AEF40642.1| O-succinylbenzoate-CoA ligase [Amycolicicoccus subflavus DQS3-9A1]
Length = 488
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 18 PYTNVFLF-YKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMA 75
P ++V L ++ R P +G + S C P GP +A SVG P V +E+
Sbjct: 263 PASDVLLTRFETRYGFPLVEGYGLSEGTCASTCN-----PIAGPRRAGSVGFPLVGQEVR 317
Query: 76 IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
I DE+G + A +G++ +R GP + R + PE GW +GD+G+ DS L
Sbjct: 318 IVDESGAELPAGTDGEVIVR-GPNIMRGYLGRPEETARTVVDGWLHTGDMGHLDSDGYL 375
>gi|387876166|ref|YP_006306470.1| acyl-CoA synthetase [Mycobacterium sp. MOTT36Y]
gi|386789624|gb|AFJ35743.1| acyl-CoA synthetase [Mycobacterium sp. MOTT36Y]
Length = 532
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 72/184 (39%), Gaps = 56/184 (30%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANKT 111
L P A S G+PV + AI ++ A V G++ R + +N+PE
Sbjct: 338 LGPDEQDAHAGSAGRPVLNVDTAILGDDDNPVAAGVVGEIAHRSPHLTPGYLNDPERTAA 397
Query: 112 AFQFGWFLSGDLGYFDSQRCL-------NMWKIS-------------------------- 138
AF+ GWF SGDLGYFD L +M K
Sbjct: 398 AFKGGWFHSGDLGYFDEHGLLHVVDRKKDMIKTGGENVASREVEEILYRHHGVQEVAVFG 457
Query: 139 ---PTEVDAVK-----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
P V+AV C+ ++A FK PK+VF D+L P +GK+
Sbjct: 458 LPHPVWVEAVVAAIVPRDGAVLTEEDLFSHCRTHLAGFKTPKRVFFVDALPKNP-SGKVL 516
Query: 179 RRIV 182
+R++
Sbjct: 517 KRVL 520
>gi|163851563|ref|YP_001639606.1| AMP-dependent synthetase and ligase [Methylobacterium extorquens
PA1]
gi|163663168|gb|ABY30535.1| AMP-dependent synthetase and ligase [Methylobacterium extorquens
PA1]
Length = 526
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 56/180 (31%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGW 117
PH A SVG E+A+ D +G A G++ IR + M NN +AN AF + GW
Sbjct: 343 PHYAGSVGLAAGPEIAVVDLDGEPLPAGETGEIVIRGDNVMKGYENNEKANAEAFTRQGW 402
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDA--------------------- 144
F +GD G + L++ KISP EVD
Sbjct: 403 FRTGDQGVLSPEGYLSITGRLKEIINRGGEKISPREVDEILMDHPAVSQCVTFAVPHDKL 462
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++ F +A+FKVP K+ I D + K TGK+QR +A+
Sbjct: 463 GEDVAAAIVLREGVEAVEKDIRSFASERLAAFKVPAKILILDEIP-KGATGKLQRIGLAQ 521
>gi|218530372|ref|YP_002421188.1| AMP-dependent synthetase and ligase [Methylobacterium extorquens
CM4]
gi|218522675|gb|ACK83260.1| AMP-dependent synthetase and ligase [Methylobacterium extorquens
CM4]
Length = 526
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 56/180 (31%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGW 117
PH A SVG E+A+ D +G A G++ IR + M NN +AN AF + GW
Sbjct: 343 PHYAGSVGLAAGPEIAVVDLDGEPLPAGETGEIVIRGDNVMKGYENNEKANAEAFTKQGW 402
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDA--------------------- 144
F +GD G + L++ KISP EVD
Sbjct: 403 FRTGDQGVLSPEGYLSITGRLKEIINRGGEKISPREVDEILMDHPAVSQCVTFAVPHDKL 462
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++ F +A+FKVP K+ I D + K TGK+QR +A+
Sbjct: 463 GEDVAAAIVLREGVEAVEKDIRSFASERLAAFKVPAKILILDEIP-KGATGKLQRIGLAQ 521
>gi|379737320|ref|YP_005330826.1| long-chain-fatty-acid--CoA ligase [Blastococcus saxobsidens DD2]
gi|378785127|emb|CCG04800.1| Long-chain-fatty-acid--CoA ligase [Blastococcus saxobsidens DD2]
Length = 500
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 59/203 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKA---SSVGKPVRR-EMAIPDENGVDQKANVNGKMC 93
FGC + + + N PH A S+G P+R EM + D+ G D G++
Sbjct: 290 FGCIILEGYGLSETSPVASFNHPHAARKPGSIGTPIRGVEMRLVDDEGEDVGPGEVGEIA 349
Query: 94 IR-EGPMVQRINNPEANKTAFQFGWFLSGDL------GYF---DSQRCLNM---WKISP- 139
IR E M E A GWF +GDL GYF D ++ + + + + P
Sbjct: 350 IRGENVMTGYWQRDEETAKAIPDGWFRTGDLARKDDDGYFFIVDRKKEMIIRGGYNVYPR 409
Query: 140 ----------------------------------------TEVDAVKEFCKRNVASFKVP 159
EV+ ++EF K VA++K P
Sbjct: 410 EIEEALYEHPAVAEVAVIGISHPDLGEEVAAAVALKPGAGAEVEELREFVKSRVAAYKYP 469
Query: 160 KKVFIADSLSGKPLTGKIQRRIV 182
+ +++ D+L P TGKI RR V
Sbjct: 470 RHLWLVDTLPKGP-TGKILRRSV 491
>gi|420266431|ref|ZP_14768899.1| acetyl-CoA synthetase, partial [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425443|gb|EJE98419.1| acetyl-CoA synthetase, partial [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 269
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 34/173 (19%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
P LE G +T + S CT L P + K SVGKP ++ I D + ++G++
Sbjct: 61 PLLE-GYGMTESCSQCT---LNPLDNI-KIGSVGKPYHTDVTIIDGDDFTDAPGIHGEIA 115
Query: 94 IREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW--------------KISP 139
IR ++ +P + +F+ GWFL+GDLGYFD + L W K+SP
Sbjct: 116 IRGDHVITSYLDPHPD--SFKDGWFLTGDLGYFDEEGYL--WLEGRSKDVINHGGEKVSP 171
Query: 140 TEVDAV---KEFCKRNVASFKVPKKVF-------IADSLSGKPLTGKIQRRIV 182
+ V+ V +F K+ VA +P +++ + D K ++RI+
Sbjct: 172 SVVEDVLGNLDFIKQ-VAVVGLPDELYGEIVAAAVIDDTKDSETLAKHRQRII 223
>gi|449301969|gb|EMC97978.1| hypothetical protein BAUCODRAFT_67136 [Baudoinia compniacensis UAMH
10762]
Length = 512
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 60/217 (27%)
Query: 24 LFYK-GRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGV 82
LF+K + P LE +A +C+ LP G H +VG E+ I D +G
Sbjct: 295 LFHKLEEAFKAPVLESYAMTEAAHLMCSN--PLPP-GKHYPGTVGPAQGVELRILDADGK 351
Query: 83 DQKANVNGKMCIREGPMVQ-RINNPEANKTAF-QFGWFLSGDLGYFDSQRCLNMW----- 135
+ + G++CIR + + +NN EANK++F + +F +GD G D L +
Sbjct: 352 EVQQGGVGEVCIRGASVTKGYLNNEEANKSSFTKDRFFQTGDQGKVDEDGYLTLTGRLKE 411
Query: 136 -------KISPTEVDAV-----------------------------------------KE 147
KISP E+D V K+
Sbjct: 412 MINKGGEKISPVEIDNVISQHEAVAEAVSFAIDDEAYGQEVGCAVKVAEGQSLDSRELKK 471
Query: 148 FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+ +A+ KVPKK++ D + K TGK+QR++VAE
Sbjct: 472 WVGEKLAAHKVPKKIWFPDEIP-KTATGKVQRKLVAE 507
>gi|188581352|ref|YP_001924797.1| AMP-dependent synthetase and ligase [Methylobacterium populi BJ001]
gi|179344850|gb|ACB80262.1| AMP-dependent synthetase and ligase [Methylobacterium populi BJ001]
Length = 526
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 69/175 (39%), Gaps = 56/175 (32%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGW 117
PH A SVG E+A+ D +G A G++ IR + M NN +AN AF + GW
Sbjct: 343 PHYAGSVGLAAGPEIAVVDIDGEPLPAGETGEIVIRGDNVMKGYENNEKANAEAFTRQGW 402
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDA--------------------- 144
F +GD G + L++ KISP EVD
Sbjct: 403 FRTGDQGVLSPEGYLSITGRLKEIINRGGEKISPREVDEILMDHPAVSQCVTFAVPHDKL 462
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
++ F +A+FKVP K+ I D + K TGK+QR
Sbjct: 463 GEDVAAAIVLREGVEAVEKDIRSFASERLAAFKVPAKILILDEIP-KGATGKLQR 516
>gi|434404436|ref|YP_007147321.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Cylindrospermum stagnale PCC 7417]
gi|428258691|gb|AFZ24641.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Cylindrospermum stagnale PCC 7417]
Length = 497
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 78/196 (39%), Gaps = 55/196 (28%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ 101
+T A + T L PK K SVG E+ I D G G++ ++ ++
Sbjct: 301 MTEASHMMTTNPLPPK--VRKPGSVGYGFGVEVGIMDNQGNLLSQGSLGEVVVKAPNVID 358
Query: 102 RI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVD----- 143
NNPEAN TAF GWF +GD G D+ L + K SP EVD
Sbjct: 359 GYENNPEANATAFVNGWFRTGDQGKLDADNYLYLTGRIKELINRGGEKFSPLEVDDVLLR 418
Query: 144 --AVKE--------------------------------FCKRNVASFKVPKKVFIADSLS 169
AV E CK +A FKVP+++ I + L
Sbjct: 419 HPAVSEALAFAVPHKSLGEDIHAAVVLKAEVSVQELIAHCKITLADFKVPQQIHILEQLP 478
Query: 170 GKPLTGKIQRRIVAEL 185
+ TGK+QR +A+L
Sbjct: 479 -RGATGKLQRLAMAQL 493
>gi|406030736|ref|YP_006729627.1| long-chain-fatty-acid--CoA ligase [Mycobacterium indicus pranii
MTCC 9506]
gi|405129283|gb|AFS14538.1| Long-chain-fatty-acid--CoA ligase [Mycobacterium indicus pranii
MTCC 9506]
Length = 532
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANKT 111
L P S G+PV E AI D++ A V G++ R + +N+PE
Sbjct: 338 LGPDEQDAHGGSAGRPVLNVETAILDDDDTPVAAGVVGEIAHRSPHLTPGYLNDPERTAA 397
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGYFD L++ VD K+ NVAS +V + ++
Sbjct: 398 AFKGGWFHSGDLGYFDEHGLLHV-------VDRKKDMINTGGENVASREVEEILY 445
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 140 TEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
TE D V C+ +A FK PK+VF D L P +GK+ +R++ E
Sbjct: 480 TEEDLVSH-CRERLAGFKTPKRVFFVDELPKNP-SGKLLKRVLRE 522
>gi|404446747|ref|ZP_11011848.1| acyl-CoA synthetase [Mycobacterium vaccae ATCC 25954]
gi|403649992|gb|EJZ05284.1| acyl-CoA synthetase [Mycobacterium vaccae ATCC 25954]
Length = 520
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 56/186 (30%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P A S G+PV + AI D++ A V G++ R M+ +++
Sbjct: 333 LGPDEQDAHAGSAGRPVVNVQTAILDDDNTAVDAGVVGEIAHRSPHLMLGYLDDDAKTAE 392
Query: 112 AFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------AVKE----- 147
AF+ GWF SGDLGY+D L++ ++ EV+ AV+E
Sbjct: 393 AFRGGWFHSGDLGYYDEHGLLHVVDRKKDMIKTGGENVASREVEEVIYRHPAVEEVAVFG 452
Query: 148 -----------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
C+ ++A FK PK+VF D+L P +GK+
Sbjct: 453 IPHPVWVEAVVAAVVLRDGVEVTEDALMTHCRAHLAGFKTPKQVFFVDALPKNP-SGKLL 511
Query: 179 RRIVAE 184
+R++ E
Sbjct: 512 KRVLRE 517
>gi|189196774|ref|XP_001934725.1| 2-succinylbenzoate-CoA ligase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187980604|gb|EDU47230.1| 2-succinylbenzoate-CoA ligase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 514
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 58/182 (31%)
Query: 60 PH--KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QF 115
PH K SVG E+ I DE G + ++CI+ E +NNP AN ++F +
Sbjct: 322 PHQRKPGSVGVGQGVEVKILDEAGNEVAQGKEAEICIKGENVTNGYLNNPAANASSFTKD 381
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------ 145
G+F +GD G DS+ + + KISP E+D V
Sbjct: 382 GFFRTGDQGKVDSEGYVIITGRIKELINKGGEKISPIELDNVIAQHPAVSEAVSFAIEDE 441
Query: 146 -----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
K + +VA FK+PK++F D + K TGKIQRR+V
Sbjct: 442 MYGQDVGLAVVIKEGQALTTGELKTWLTDHVAKFKLPKQIFFTDIMP-KTATGKIQRRLV 500
Query: 183 AE 184
AE
Sbjct: 501 AE 502
>gi|428310604|ref|YP_007121581.1| acyl-CoA synthetase [Microcoleus sp. PCC 7113]
gi|428252216|gb|AFZ18175.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Microcoleus
sp. PCC 7113]
Length = 506
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 59/207 (28%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
R +P R +GC A+++ L P+ H S+G P+R E+ + D++G +
Sbjct: 306 RFGIPLRQLYGCTEAGAVAIN----LEPEADLH-YDSIGVPMRNVEIIVMDDDGNELAPG 360
Query: 88 VNGKMCIREGPMVQRINN-PEANKTAFQFGWFLSGDLGYFDSQRCLNM------------ 134
+ G+ I+ + +N PE NK AF+ G F +GDLG D Q L +
Sbjct: 361 LIGEFVIKSETLTTGYHNLPEVNKEAFRNGHFFTGDLGKKDEQGRLYLTGRKKIFIDTGG 420
Query: 135 WKISPTEVDAV----------------------------------KE-----FCKRNVAS 155
K+ P EV+ + KE FCK +A
Sbjct: 421 HKVDPLEVEDILVAYPKVQEAVVVGTKGPLGGELIKAVIVLNEECKEQEIIAFCKDKLAD 480
Query: 156 FKVPKKVFIADSLSGKPLTGKIQRRIV 182
FKVPK + L PL GK+ R+ V
Sbjct: 481 FKVPKFIEFRQELPKNPL-GKVLRKKV 506
>gi|332524224|ref|ZP_08400450.1| coenzyme A synthetase-like protein [Rubrivivax benzoatilyticus JA2]
gi|332107559|gb|EGJ08783.1| coenzyme A synthetase-like protein [Rubrivivax benzoatilyticus JA2]
Length = 509
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 59/174 (33%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K+ SVG E+AI DE+G G++ IR GP V +NP+AN AF GWF
Sbjct: 328 KSGSVGPAAGPEIAIMDEHGTLLPRGAVGEIVIR-GPNVTAGYESNPKANAEAFTNGWFR 386
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEVDAV---------------------- 145
+GD G D+ + + KISP E+D +
Sbjct: 387 TGDQGTLDADGYVTITGRLKEIINRGGEKISPREIDEILMDHPAVAQVVCFGMPHPKLGE 446
Query: 146 -------------------KEFCKRNVASFKVPKKV-FIADSLSGKPLTGKIQR 179
++F VA FKVP+++ F+A+ G TGK+QR
Sbjct: 447 EVAAAVVPREGQQPSERELQDFVAARVADFKVPRRILFMAEIPKGA--TGKLQR 498
>gi|299535197|ref|ZP_07048521.1| long-chain fatty-acid-CoA ligase [Lysinibacillus fusiformis ZC1]
gi|424737796|ref|ZP_18166244.1| long-chain fatty-acid-CoA ligase [Lysinibacillus fusiformis ZB2]
gi|298729318|gb|EFI69869.1| long-chain fatty-acid-CoA ligase [Lysinibacillus fusiformis ZC1]
gi|422948270|gb|EKU42654.1| long-chain fatty-acid-CoA ligase [Lysinibacillus fusiformis ZB2]
Length = 498
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 54 LLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
LL + K SVGKP+ + E+ + D +G A G++C+R GP V + + NPE
Sbjct: 309 LLDTDALTKIGSVGKPLAQTEVCVVDSDGKTVPAGEVGEICVR-GPQVMKGYLRNPEETA 367
Query: 111 TAFQFGWFLSGDLGYFDSQRCL 132
A + GW SGDLG FD + L
Sbjct: 368 RAIRDGWLYSGDLGRFDKEGYL 389
>gi|407784323|ref|ZP_11131494.1| acyl-CoA synthetase [Oceanibaculum indicum P24]
gi|407197205|gb|EKE67280.1| acyl-CoA synthetase [Oceanibaculum indicum P24]
Length = 502
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 59/180 (32%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQ-FGW 117
K S G+P E+ I D++G + A +G++C+R GP V + +PE + +F GW
Sbjct: 317 KIGSTGRPTAHCEIRITDDDGREVPAGTHGEICVR-GPKVTKGYWKDPEKTEASFYPEGW 375
Query: 118 FLSGDLGYFDSQRCLNM------------------------------------------W 135
F SGD+GY D+ L + W
Sbjct: 376 FRSGDVGYVDADGFLYITDRKKDMILSGGENIASSEVERVIYQMPQVSEVAVIGVPDERW 435
Query: 136 KISPTEV-----------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
P + + +++ C++++A FKVPK++ + ++L P +GKI +R++ +
Sbjct: 436 GEKPVAIIVPKPGQTLAYETMRDHCRQHLAGFKVPKELHLREALPRNP-SGKILKRVLRD 494
>gi|340915001|gb|EGS18342.1| coenzyme A synthetase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 514
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 74/181 (40%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G K +VG E+ I D+ G G++CI+ E +NNP AN +AF + G
Sbjct: 324 GKRKPGTVGLGQGVEVVILDDAGNPVPQGKEGEICIKGENVTKGYLNNPSANASAFTKDG 383
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVDAV------------------- 145
+F +GD G D + +N KISP E+D V
Sbjct: 384 YFRTGDQGKKDEDGYVIITGRIKELINKGGEKISPIELDNVLARHPAVSEAVSFAIPDEM 443
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K++ +A FKVPKKV+ D + K TGKIQRRIVA
Sbjct: 444 YGQDIGVAIVLKQGHRLNEEELKKWVGEKLAKFKVPKKVYFTDVMP-KTATGKIQRRIVA 502
Query: 184 E 184
E
Sbjct: 503 E 503
>gi|389628866|ref|XP_003712086.1| peroxisomal-coenzyme A synthetase [Magnaporthe oryzae 70-15]
gi|351644418|gb|EHA52279.1| peroxisomal-coenzyme A synthetase [Magnaporthe oryzae 70-15]
gi|440475289|gb|ELQ43979.1| peroxisomal-coenzyme A synthetase [Magnaporthe oryzae Y34]
gi|440485937|gb|ELQ65853.1| peroxisomal-coenzyme A synthetase [Magnaporthe oryzae P131]
Length = 522
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 57/179 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFL 119
K SVG E+ I D +G + V G++CIR E +NN EAN +AF + G+F
Sbjct: 334 KPGSVGIGQGVEVRILDGDGNELPRGVEGEICIRGENVTSGYLNNAEANASAFTKGGFFR 393
Query: 120 SGDLGYFDSQ-----------RCLNMW--KISPTEVDAV--------------------- 145
+GD G D + +N KISP E+D V
Sbjct: 394 TGDQGKIDPEDGYVTITGRIKELINKAGEKISPIELDNVLTRHEAVSEAVSFAVPSELYG 453
Query: 146 --------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+E+ +A FKVP+K++ + + K TGKIQRRIVAE
Sbjct: 454 QDVGVAVVLKPGAKLGKDELREWVAARLAKFKVPEKIYYTEIMP-KTATGKIQRRIVAE 511
>gi|324998703|ref|ZP_08119815.1| AMP-dependent synthetase and ligase [Pseudonocardia sp. P1]
Length = 532
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 48 VCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP--MVQRIN 104
V T+F P++ +VG P V E+A+ D G +G++ R GP M ++
Sbjct: 336 VTTIF--RPEHQLTHTGAVGTPTVNTEVAVMDTAGRLLGTGESGEIVYR-GPQTMNGYLD 392
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKK 161
+P+A AF GWF SGD+G+FD L W D K+ K NVAS +V +
Sbjct: 393 DPDATAAAFAHGWFHSGDVGHFDDDGVL--WFD-----DRYKDVIKTGGENVASLEVERA 445
Query: 162 VFIADS 167
++ AD+
Sbjct: 446 LYAADA 451
>gi|410030267|ref|ZP_11280097.1| acyl-CoA synthetase [Marinilabilia sp. AK2]
Length = 561
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 62/205 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++VC P +G + ++G P+ ++ I D+NG D G++CI+
Sbjct: 358 YGLTETSPVAVCN-----PIDGTERIGTIGIPLPNTDVKIIDDNGNDLPTGERGELCIK- 411
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV 142
GP V R N PE + WF +GD+ D + + + + P EV
Sbjct: 412 GPQVMRGYWNRPEETEKVMDGDWFKTGDIAVIDDDGFVKIVDRKKEMILVSGFNVYPNEV 471
Query: 143 ----------------------------------------DAVKEFCKRNVASFKVPKKV 162
+ + C+ + ++KVP++V
Sbjct: 472 ENAIAMHPKVLETGVIGMPDDKSTEKVVAYVVPKDKSVTAEELIAHCRNELTNYKVPREV 531
Query: 163 FIADSLSGKPLTGKIQRRIVAELRK 187
+ AD L K GKI RR + E+ +
Sbjct: 532 YFADELP-KTNVGKILRRKIKEMHE 555
>gi|27377348|ref|NP_768877.1| hypothetical protein bll2237 [Bradyrhizobium japonicum USDA 110]
gi|27350492|dbj|BAC47502.1| bll2237 [Bradyrhizobium japonicum USDA 110]
Length = 2154
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 55/178 (30%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEA-NKTAFQFGWFLS 120
K SVG+ E+A+ DE G + +G++ +R M + N EA + AF+ GWF +
Sbjct: 345 KLGSVGRAAGPEIAVMDETGRALASGAHGEIVLRGANMSRGYYNDEAATQAAFRDGWFRT 404
Query: 121 GDLGYFDSQRCLNM------------WKISPTEV-------------------------- 142
GDLGY D+ L + KISP EV
Sbjct: 405 GDLGYLDADGYLFIVGRIKDVINRGGQKISPLEVEEVLLSHPAVLEAGVFAVPHPKLGEN 464
Query: 143 ---------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
D +++F ++ +A++KVP + +L K +GK++R +A+L
Sbjct: 465 VAAVVVLRANSEATSDQLRKFARKRLAAYKVPSLIRSVAALP-KGASGKVKRNALADL 521
>gi|29826917|ref|NP_821551.1| acyl-CoA synthetase, long-chain fatty acid:CoA ligase [Streptomyces
avermitilis MA-4680]
gi|29604014|dbj|BAC68086.1| putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase
[Streptomyces avermitilis MA-4680]
Length = 495
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 61/205 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGP---HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMC 93
FGC V + ++ N P KA S+G P++ ++ + DE G D G++
Sbjct: 289 FGCVVLEGFGMSETSPVVTFNHPDRPRKAGSIGTPIKDVQVRLLDEKGQDVTPGEIGELA 348
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISP 139
+R GP V + N PE GW SGDL + D L + + + P
Sbjct: 349 VR-GPNVMKGYWNRPEETAATIPDGWLRSGDLAHRDEDGYLYIVDRKKDMIIRGGYNVYP 407
Query: 140 TEV-----------------------------------------DAVKEFCKRNVASFKV 158
E+ D +++F K VA++K
Sbjct: 408 REIEEVLHEHPAVALAAVVGLADAHLGEEIAAAVVLRPKAQATPDELRQFVKERVAAYKY 467
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVA 183
P++V++ D+L P +GKI +R ++
Sbjct: 468 PREVWLVDTLPTGP-SGKILKREIS 491
>gi|389695369|ref|ZP_10183011.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Microvirga
sp. WSM3557]
gi|388584175|gb|EIM24470.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Microvirga
sp. WSM3557]
Length = 877
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 57/174 (32%)
Query: 67 GKPVRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWFLSGDLG 124
G+P + I E+G A G++ +R GP M ++ P+ N++AF GW +GDLG
Sbjct: 356 GQPWPGTLMIAGEDGRPLPAGDQGEIWVR-GPTVMAGYLDAPDLNRSAFADGWLRTGDLG 414
Query: 125 YFDSQRCLNMW------------KISPTEVDA---------------------------- 144
D L + KI+P E+DA
Sbjct: 415 SLDEDGYLFLHGRLNELINRGGEKIAPAEIDAALLRHPAVAEAAAFAVPHPRLDEDVAAA 474
Query: 145 -------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
+++F + +ASFK+P+++ I D L K TGK+QRR + ++
Sbjct: 475 VVLHPGAEALPADLRQFLQSELASFKIPRRIHILDQLP-KGSTGKVQRRRLKDM 527
>gi|441496321|ref|ZP_20978555.1| Long-chain-fatty-acid--CoA ligase [Fulvivirga imtechensis AK7]
gi|441439976|gb|ELR73269.1| Long-chain-fatty-acid--CoA ligase [Fulvivirga imtechensis AK7]
Length = 560
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 73/185 (39%), Gaps = 59/185 (31%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR-INNPEANKTAF 113
P +G H ++G PV EMAI DENG + G++C R GP V + N + + F
Sbjct: 372 PLDGTHMMGTIGLPVSSTEMAIFDENGSQLQQGEVGEICAR-GPQVMKGYWNKDNSGVFF 430
Query: 114 QFGWFLSGDLGYFDSQ-------RCLNMWKIS-----PTEV------------------- 142
+ WF +GD+G D + R +M +S P EV
Sbjct: 431 EGAWFRTGDMGVMDEKGFFRIVDRKKDMINVSGFNVYPNEVENVIANHPKILEVAAIGVP 490
Query: 143 ---------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRI 181
+ VKEFC N+ +K PK + D L K GKI RR
Sbjct: 491 DPRSNEVVKIFVVKGDQSLTEEEVKEFCDENLTGYKRPKYIEFRDVLP-KSNVGKILRR- 548
Query: 182 VAELR 186
ELR
Sbjct: 549 --ELR 551
>gi|432336436|ref|ZP_19587945.1| acyl-CoA synthetase [Rhodococcus wratislaviensis IFP 2016]
gi|430776650|gb|ELB92064.1| acyl-CoA synthetase [Rhodococcus wratislaviensis IFP 2016]
Length = 539
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 56/150 (37%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFD---- 127
++I D+ G + A G++C+ GP V ++NPEAN+ AF+ GWF +GDLGY D
Sbjct: 362 ISIQDDGGRELAAGERGEICVC-GPAVFAGYLDNPEANRKAFRDGWFRTGDLGYLDGSGL 420
Query: 128 ---SQRCLNMW-----KISPTEV------------------------------------- 142
+ R +M+ I P EV
Sbjct: 421 LYITGRASDMFISGGSNIDPREVEEKLLKHPDVVAAGVVGAPDPTWGEVGYALCVLRPGS 480
Query: 143 ----DAVKEFCKRNVASFKVPKKVFIADSL 168
D + +C+ N+A +KVPK++ A +L
Sbjct: 481 TLTTDELLTWCRSNMARYKVPKRIEFAPTL 510
>gi|386400637|ref|ZP_10085415.1| amino acid adenylation enzyme/thioester reductase family protein
[Bradyrhizobium sp. WSM1253]
gi|385741263|gb|EIG61459.1| amino acid adenylation enzyme/thioester reductase family protein
[Bradyrhizobium sp. WSM1253]
Length = 2151
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 57/179 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG+ E+AI DE G + +G++ +R GP + N+ A + AF+ GWF
Sbjct: 345 KVGSVGRAAGPEIAIMDETGRALASGEHGEIMLR-GPNMSHGYYNDEAATQAAFRNGWFR 403
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEV------------------------- 142
+GDLGY D+ L + ISP EV
Sbjct: 404 TGDLGYLDADGYLFIVGRIKDVINRGGQNISPLEVEDVLLSHPAVLEAGVFAVPHPKLGE 463
Query: 143 ----------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
D +++F ++ +A++KVP + +L K +GK++R +AEL
Sbjct: 464 NVAAIVVLRPNSEATSDQLRQFARKRLAAYKVPSLIRSVATLP-KGASGKVKRNALAEL 521
>gi|424856913|ref|ZP_18281121.1| dicarboxylate-CoA ligase PimA [Rhodococcus opacus PD630]
gi|356663048|gb|EHI43227.1| dicarboxylate-CoA ligase PimA [Rhodococcus opacus PD630]
Length = 539
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 56/150 (37%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFD---- 127
++I D+ G + A G++C+ GP V ++NPEAN+ AF+ GWF +GDLGY D
Sbjct: 362 ISIQDDGGRELAAGERGEICVC-GPAVFAGYLDNPEANRKAFRDGWFRTGDLGYLDESGL 420
Query: 128 ---SQRCLNMW-----KISPTEV------------------------------------- 142
+ R +M+ I P EV
Sbjct: 421 LYITGRASDMFISGGSNIDPREVEEKLLKHPDVVAAGVVGAPDPTWGEVGYALCVLRPGS 480
Query: 143 ----DAVKEFCKRNVASFKVPKKVFIADSL 168
D + +C+ N+A +KVPK++ A +L
Sbjct: 481 TLTTDELLTWCRSNMARYKVPKRIEFAPTL 510
>gi|148656221|ref|YP_001276426.1| AMP-dependent synthetase and ligase [Roseiflexus sp. RS-1]
gi|148568331|gb|ABQ90476.1| AMP-dependent synthetase and ligase [Roseiflexus sp. RS-1]
Length = 520
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 60/195 (30%)
Query: 51 VFVLLPKNG-PHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNP 106
V L P +G P K S+G + +E+ I DE+GV A G++ IR GP V + NP
Sbjct: 318 VSTLNPLDGRPRKIGSIGVALPGQEVRIVDEHGVSAPAGTVGEIVIR-GPNVMQGYYKNP 376
Query: 107 EANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV--------- 145
EA A + GW +GDLG+ D++ + I P E++ V
Sbjct: 377 EATAAAIRDGWLYTGDLGFCDAEGYFYIVGRKKEMIIRGGENIYPKEIEEVLYRHPAVVE 436
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
++C+ N+A FK P+ + D+ K
Sbjct: 437 AAVVGLPDPIWGEQVAAFIVPRPDKAVSTEEIADYCRANLADFKCPRVIEFIDAFP-KTA 495
Query: 174 TGKIQR-RIVAELRK 187
TGKIQ+ ++V + R+
Sbjct: 496 TGKIQKNQLVEQYRQ 510
>gi|296139692|ref|YP_003646935.1| AMP-dependent synthetase and ligase [Tsukamurella paurometabola DSM
20162]
gi|296027826|gb|ADG78596.1| AMP-dependent synthetase and ligase [Tsukamurella paurometabola DSM
20162]
Length = 552
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 55/171 (32%)
Query: 70 VRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFD- 127
V ++AI +GV A G++ R ++ NNP AN AF GWF GD+GY D
Sbjct: 379 VSTDIAIMGADGVLLPAEQIGEIVYRAPQLMSGYWNNPAANAEAFAHGWFHGGDIGYVDR 438
Query: 128 ------SQRCLNMWKI-------------------------------------------- 137
+ R ++ K
Sbjct: 439 DGVVYFTDRAKDIIKTGGENVSSVEVERVLLGHRDVIDVAVVGTPHERWGEAVTAFVVIR 498
Query: 138 --SPTEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
+P++ A+ ++ + ++A FKVPK++ + D L K TGKIQ+ +V L
Sbjct: 499 SGAPSDSGALVDYAREHLAGFKVPKEIVLVDQLP-KTATGKIQKHLVRALH 548
>gi|345563242|gb|EGX46245.1| hypothetical protein AOL_s00110g69 [Arthrobotrys oligospora ATCC
24927]
Length = 513
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 56/181 (30%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFL 119
K SVG ++ I D+NG + G++CI+ E +NN AN ++F + G+F
Sbjct: 323 KPGSVGLGQGVDVRILDDNGDEVPQGKEGEICIKGENVTTGYLNNEAANASSFTKTGYFR 382
Query: 120 SGDLGYFDS----------QRCLNMW--KISPTEVDA----------------------- 144
+GD G D + +N KISP E+D+
Sbjct: 383 TGDQGKKDEDGYVIITGRIKELINRGGEKISPIEIDSALLSHETVQEAVSFAIEHEILGQ 442
Query: 145 ------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
+K F +A+FK+P K+++ + K TGKIQRRIVAE
Sbjct: 443 VPGAAVVFKEGKQVGVEELKRFLGEKLAAFKIPTKIYVTKHMP-KTATGKIQRRIVAEEM 501
Query: 187 K 187
K
Sbjct: 502 K 502
>gi|254417082|ref|ZP_05030828.1| AMP-binding enzyme domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196176060|gb|EDX71078.1| AMP-binding enzyme domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 599
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 54/175 (30%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFLS 120
K SVGK V +AI +E+G G++ +R + ++N EAN TAF GWF +
Sbjct: 327 KPGSVGKVVNGNVAIINESGEPLPPQQVGEIAVRGNHVTPGYLDNLEANPTAFINGWFRT 386
Query: 121 GDLGYFDSQ-------RCLNMW-----KISPTEVDAV----------------------- 145
GD+GY D++ R M KISP EVDAV
Sbjct: 387 GDIGYLDAEGDLFLVGRSKEMINRGGEKISPQEVDAVLLKHPQVLEVATFGISHPSLGED 446
Query: 146 -----------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
+++ ++A +K+P ++ I +S+ + TGKI R+ +A
Sbjct: 447 IAAAVVLKENDVSLQHLRDYLFDHLAPYKIPSQILIVESIP-RGTTGKIIRQELA 500
>gi|421605806|ref|ZP_16047477.1| hypothetical protein BCCGELA001_42246, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404262084|gb|EJZ28093.1| hypothetical protein BCCGELA001_42246, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 232
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG+ ++AI DE G + G++ +R GP + R N+ A K AF+ GWF
Sbjct: 128 KIGSVGRAAGPDIAIMDEAGRTLASGAQGEIMLR-GPNMSRGYYNDEAATKAAFRKGWFR 186
Query: 120 SGDLGYFDSQRCL------------NMWKISPTEVDA 144
+GDLGY D L KISP EV++
Sbjct: 187 TGDLGYLDEDGYLFIVGRIKDVINRGGQKISPQEVES 223
>gi|381160190|ref|ZP_09869422.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Thiorhodovibrio sp. 970]
gi|380878254|gb|EIC20346.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Thiorhodovibrio sp. 970]
Length = 522
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P GP K SVG P+ EM I D +G Q +G++C+R GP V R PE + +
Sbjct: 329 PPAGPRKPRSVGPPLPGVEMRIADPDGNWQAQGEHGEVCVR-GPSVMRGYWKLPEETRAS 387
Query: 113 FQFGWFLSGDLGYFDSQ 129
F WF +GDLG+ DS
Sbjct: 388 FHGDWFRTGDLGWRDSD 404
>gi|374607457|ref|ZP_09680258.1| AMP-dependent synthetase and ligase [Mycobacterium tusciae JS617]
gi|373555293|gb|EHP81863.1| AMP-dependent synthetase and ligase [Mycobacterium tusciae JS617]
Length = 518
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKM 92
P L+ F L P A + G+P V E I D+ G++
Sbjct: 305 PELQLWNFYGQTEMAPLASALGPTEQQDHAGAAGRPAVNVETVILDDTNTQVSPGTVGEI 364
Query: 93 CIREGP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
R GP M+ +++PE AF GWF SGDLGY+D L++ VD K+ K
Sbjct: 365 AHR-GPHLMLGYLDDPEKTAEAFLGGWFHSGDLGYYDEHGLLHV-------VDRKKDMIK 416
Query: 151 ---RNVASFKVPKKVF 163
NVAS +V + ++
Sbjct: 417 TGGENVASREVEEALY 432
>gi|159898928|ref|YP_001545175.1| AMP-dependent synthetase/ligase [Herpetosiphon aurantiacus DSM 785]
gi|159891967|gb|ABX05047.1| AMP-dependent synthetase and ligase [Herpetosiphon aurantiacus DSM
785]
Length = 498
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 59/179 (32%)
Query: 61 HKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFG 116
+K SVG P+ + E+ I D E V+ + G++ IR GP M+ NNP A A + G
Sbjct: 316 YKLGSVGVPIEQVEIKIVDIETDVEVLPDEVGEIIIR-GPNVMLGYWNNPTATAQAIRNG 374
Query: 117 WFLSGDLG-------YFDSQRCLNM-----WKISPTEVD--------------------- 143
WF +GDLG F R +M K+ P EV+
Sbjct: 375 WFHTGDLGKKDQAGYLFIVDRLKDMINVAGIKVYPAEVENVIYQLPEVAEVAVYGVADAI 434
Query: 144 --------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
A+ FC++++ASFKVP + + DS+ P TGK+ +R++
Sbjct: 435 TGERVEAQIVFKPKQQLPIQAIIAFCRQHMASFKVPTAIKVVDSIPKNP-TGKVLKRLL 492
>gi|356561637|ref|XP_003549086.1| PREDICTED: uncharacterized protein LOC100808878 [Glycine max]
Length = 175
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Query: 145 VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
V +CK+N+ASFKVP+KVFI DSL K TGKI RR+VAE
Sbjct: 131 VLRYCKKNLASFKVPEKVFITDSLH-KTATGKILRRLVAE 169
>gi|396461961|ref|XP_003835592.1| hypothetical protein LEMA_P049330.1 [Leptosphaeria maculans JN3]
gi|312212143|emb|CBX92227.1| hypothetical protein LEMA_P049330.1 [Leptosphaeria maculans JN3]
Length = 244
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 79/186 (42%), Gaps = 59/186 (31%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP N K SVG E+ I D+ G + G++CIR G V + +N+P AN+++
Sbjct: 52 LPPN-KRKPGSVGIGQGVEVKILDDAGHEVAQGKEGEICIR-GENVTKGYLNHPSANESS 109
Query: 113 F-QFGWFLSGDLGYFDS----------QRCLNMW--KISPTEVDAV-------------- 145
F + G+F +GD G D + +N KISP E+D V
Sbjct: 110 FTKEGFFRTGDQGKLDEDGYVIITGRIKELINKGGEKISPIELDNVIAQHPAVSEAVSFA 169
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
K + VA FK+PKK++ D + K TGKIQ
Sbjct: 170 IEDEMYGQDVGLAVVIKEGHKLTADELKTWLADRVARFKLPKKIYFTDMMP-KTATGKIQ 228
Query: 179 RRIVAE 184
RR+VAE
Sbjct: 229 RRLVAE 234
>gi|379747571|ref|YP_005338392.1| acyl-CoA synthetase [Mycobacterium intracellulare ATCC 13950]
gi|378799935|gb|AFC44071.1| acyl-CoA synthetase [Mycobacterium intracellulare ATCC 13950]
Length = 542
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANKT 111
L P + G+PV E AI D+ A V G++ R + +N+PE
Sbjct: 348 LGPDEQDAHGGAAGRPVLNVETAILDDADNPVTAGVVGEIAHRSPHLTPGYLNDPERTAA 407
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF GWF SGDLGYFD L++ VD K+ K NVAS +V + ++
Sbjct: 408 AFTSGWFHSGDLGYFDEHGLLHV-------VDRKKDMIKTGGENVASREVEEVIY 455
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 140 TEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
TE D V C+ +A FK PK+VF D L P +GK+ +R++ E
Sbjct: 490 TEEDLVSH-CRERLAGFKTPKRVFFVDELPKNP-SGKLLKRVLRE 532
>gi|401626755|gb|EJS44677.1| pcs60p [Saccharomyces arboricola H-6]
Length = 543
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 74/182 (40%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P + I D+ G++ IR E + NN +ANK F +
Sbjct: 351 GKRKPGTVGQPQGVIVVILDDKDNVLPPGKVGEVSIRGENVTLGYANNAKANKENFTKRE 410
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------ 145
+F +GD G+FD + L + KISP E+D +
Sbjct: 411 NYFRTGDQGFFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDD 470
Query: 146 -----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F K+++A+FKVP KV+ D L K TGKIQRRI+
Sbjct: 471 MYGQVVQAAVVLKQGEKMTYEELAGFLKKHLAAFKVPTKVYFVDKLP-KTATGKIQRRII 529
Query: 183 AE 184
AE
Sbjct: 530 AE 531
>gi|452003983|gb|EMD96439.1| hypothetical protein COCHEDRAFT_1162079 [Cochliobolus
heterostrophus C5]
Length = 512
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 75/181 (41%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G K SSVG E+ I D+ G + ++CIR E +NNP AN ++F + G
Sbjct: 323 GQRKPSSVGIGQGVEIKILDDAGNEVPQGKEAEICIRGENVTKGYLNNPAANASSFTKGG 382
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVDAV------------------- 145
+F +GD G D+ + +N KISP E+D V
Sbjct: 383 FFRTGDQGKKDADGYVIITGRIKELINKGGEKISPIELDNVIAQHPAVSEAVSFAVEDEM 442
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K + VA FK+PK++F D + K TGKIQRR+VA
Sbjct: 443 YGQDIGLAIVVKEGKTLSAGELKTWLTDRVAKFKLPKEIFFTDIMP-KTATGKIQRRLVA 501
Query: 184 E 184
E
Sbjct: 502 E 502
>gi|414165332|ref|ZP_11421579.1| hypothetical protein HMPREF9697_03480 [Afipia felis ATCC 53690]
gi|410883112|gb|EKS30952.1| hypothetical protein HMPREF9697_03480 [Afipia felis ATCC 53690]
Length = 511
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 78/197 (39%), Gaps = 61/197 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+G T++I+V P GP K S+GKP+ E+ I D +G + G++ IR
Sbjct: 303 YGLTETTSINVMN-----PLRGPRKPGSIGKPLAPNEIRIVDGDGRELPVGAVGEIEIR- 356
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV 142
GP V + +P+A + GW SGDL FD + + + ISP EV
Sbjct: 357 GPTVMKGYYKDPDATAATIRNGWVRSGDLARFDDEGYIFIVGRKKETIIRGGENISPLEV 416
Query: 143 D-------AVKE--------------------------------FCKRNVASFKVPKKVF 163
+ AV+E C +ASFKVP ++
Sbjct: 417 EQIIARHPAVREAAAVGIPDRIYGEVVAACVVKREDVTENELIQHCAEYLASFKVPARIA 476
Query: 164 IADSLSGKPLTGKIQRR 180
D L P+ GK RR
Sbjct: 477 FVDELPRNPI-GKFVRR 492
>gi|150396652|ref|YP_001327119.1| acyl-CoA synthetase [Sinorhizobium medicae WSM419]
gi|150028167|gb|ABR60284.1| AMP-dependent synthetase and ligase [Sinorhizobium medicae WSM419]
Length = 549
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
++ I DENG + A +G++C+ GP V NPEAN AF+ GWF +GDLG+ D+Q
Sbjct: 362 QVQIQDENGDEVAAGCSGEICVI-GPAVFAGYYRNPEANAKAFRNGWFRTGDLGHVDTQG 420
Query: 131 CL 132
L
Sbjct: 421 FL 422
>gi|384221273|ref|YP_005612439.1| hypothetical protein BJ6T_76050 [Bradyrhizobium japonicum USDA 6]
gi|354960172|dbj|BAL12851.1| hypothetical protein BJ6T_76050 [Bradyrhizobium japonicum USDA 6]
Length = 2147
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 57/179 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG+ E+AI D G + +G++ +R GP + R N+ A + AF+ GWF
Sbjct: 347 KVGSVGRAAGPEIAIMDGAGRTLASGEHGEIMLR-GPNMSRGYYNDEAATRAAFRNGWFR 405
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEV------------------------- 142
+GDLGY D+ L + KISP EV
Sbjct: 406 TGDLGYLDADGYLFIVGRIKDVINRGGQKISPLEVEEVLLSHPAVLEAGVFAVPHQKLGE 465
Query: 143 ----------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
D +++F ++ +A++KVP + +L K +GK++R +A+L
Sbjct: 466 NVAAVVVLRPNSEATPDQLRQFARKRLAAYKVPSLIRGVAALP-KGASGKVKRNALADL 523
>gi|218781010|ref|YP_002432328.1| AMP-dependent synthetase and ligase [Desulfatibacillum alkenivorans
AK-01]
gi|218762394|gb|ACL04860.1| AMP-dependent CoA ligase/synthetase [Desulfatibacillum alkenivorans
AK-01]
Length = 525
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 64/195 (32%)
Query: 53 VLLPKNGPHKAS--SVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPE 107
VL P +G + + S+GKP+ E+ + DE+G + G++C + G V + N PE
Sbjct: 332 VLSPWDGDFETTLKSIGKPIADFEVKVVDESGKEVALGETGELCFK-GDAVTKGYYNMPE 390
Query: 108 ANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------- 142
F+ GW +GD+GY D + + + + + P EV
Sbjct: 391 KTAETFRDGWLHTGDMGYLDEEGFIYLRGRKKEMYIQGGFNVYPVEVENLIARHPKVAMV 450
Query: 143 ----------------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLT 174
+ +K FCK ++A +KVP+++ L PLT
Sbjct: 451 AGIGVPDEYLGEVGRYYIVPYPDANPTEEEIKAFCKEHLADYKVPREIVFRAEL---PLT 507
Query: 175 --GKIQRRIVAELRK 187
GKIQ+ + E K
Sbjct: 508 PAGKIQKSKLEEEAK 522
>gi|433648823|ref|YP_007293825.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Mycobacterium
smegmatis JS623]
gi|433298600|gb|AGB24420.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Mycobacterium
smegmatis JS623]
Length = 519
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 61/209 (29%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKM 92
P L+ F L P++ A + G+P + E AI D+ A G++
Sbjct: 305 PNLQLWNFYGQTEMAPLASALGPEDQGDHAGAAGRPAINVETAILDDTDSPVAAGTVGEI 364
Query: 93 CIREGP--MVQRINNPEANKTAFQFGWFLSGDLGYFDS-------QRCLNMWK-----IS 138
R GP M+ +++P AF+ GWF SGDLGY+D R +M K ++
Sbjct: 365 AHR-GPHLMLGYLDDPARTADAFRGGWFHSGDLGYYDDFGLLHVVDRKKDMIKTGGENVA 423
Query: 139 PTEVD-------AVKE----------------------------------FCKRNVASFK 157
EV+ AV+E C+ ++A +K
Sbjct: 424 SREVEEVLYRHPAVQEVAVFGVPHPVWVEAVVAAVVIRDSADASADELVSHCRGHLAGYK 483
Query: 158 VPKKVFIADSLSGKPLTGKIQRRIVAELR 186
PK+VF D+L P +GK+ +R ELR
Sbjct: 484 TPKQVFFVDALPKNP-SGKLLKR---ELR 508
>gi|409403073|ref|ZP_11252470.1| acyl-CoA synthetase [Acidocella sp. MX-AZ02]
gi|409128450|gb|EKM98358.1| acyl-CoA synthetase [Acidocella sp. MX-AZ02]
Length = 546
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 55/164 (33%)
Query: 73 EMAIPDENGVDQKANVNGKMCI-REGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQ-- 129
+++I DE G + + G++C+ NNPEAN AF+ GWF +GDLG+ D Q
Sbjct: 364 QVSIQDEQGKEMQPGETGEICVCGLAVFAGYYNNPEANAKAFRNGWFRTGDLGHLDRQGF 423
Query: 130 -----RCLNMW-----KISPTEVD-------AVKE------------------------- 147
R +M+ + P EV+ AV E
Sbjct: 424 LFITGRASDMYISGGSNVYPREVEELLLTHPAVAEVAIVGVPDRMWGEVGVAVLVTRPGA 483
Query: 148 ---------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F +A +K+PK+VF D L K GKI ++IV
Sbjct: 484 SISEAEVMAFLDGKIARYKMPKQVFFWDELP-KSGYGKITKKIV 526
>gi|398832991|ref|ZP_10591137.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Herbaspirillum sp. YR522]
gi|398222378|gb|EJN08755.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Herbaspirillum sp. YR522]
Length = 532
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
E+AI D++G A G++C+R GP V NNP+AN AF+F WF +GDLG+ D
Sbjct: 358 EIAILDDDGRKLAAFETGEICVR-GPAVFMGYHNNPDANAKAFKFDWFHTGDLGHVDRDG 416
Query: 131 CL 132
L
Sbjct: 417 FL 418
>gi|288906112|ref|YP_003431334.1| acyl-CoA synthetase/AMP-acid ligase [Streptococcus gallolyticus
UCN34]
gi|386338553|ref|YP_006034722.1| AMP-binding protein [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|288732838|emb|CBI14414.1| putative Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[Streptococcus gallolyticus UCN34]
gi|334281189|dbj|BAK28763.1| AMP-binding enzyme family protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 507
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 27/147 (18%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
P LE G +T + S CT L P + K SVGKP E+ I D + + KA + G++
Sbjct: 298 PILE-GYGMTESCSQCT---LNPIDAI-KVGSVGKPYGSEVKIVDGDDLTMKAGIEGEIA 352
Query: 94 IREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW--------------KISP 139
IR ++ +P + +F+ GW L+GDLGY+D L W KI+P
Sbjct: 353 IRGPHVITDYLSP--SPKSFRDGWLLTGDLGYYDEDGYL--WLNGRSKNVINRGGEKINP 408
Query: 140 TEVDAV---KEFCKRNVASFKVPKKVF 163
T ++ V +F R +A+ +P ++
Sbjct: 409 TVIENVIGNLDFV-RGIAAVPLPDDIY 434
>gi|148256146|ref|YP_001240731.1| hypothetical protein BBta_4801 [Bradyrhizobium sp. BTAi1]
gi|146408319|gb|ABQ36825.1| hypothetical protein BBta_4801 [Bradyrhizobium sp. BTAi1]
Length = 2167
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVGKP +AI D+ G A G++ + +GP + R N A + AF+ GWF
Sbjct: 342 KPGSVGKPAGAAIAIMDDQGRVLAAGQRGEVVL-QGPAITRGYYKNETATRAAFRDGWFR 400
Query: 120 SGDLGYFDSQRCLNMW--------------KISPTEVD 143
+GDLGY DS L + K+SP EV+
Sbjct: 401 TGDLGYLDSDGYLFLLGRINKADIINRGGQKVSPREVE 438
>gi|422007313|ref|ZP_16354299.1| AMP-dependent synthetase and ligase [Providencia rettgeri Dmel1]
gi|414097203|gb|EKT58858.1| AMP-dependent synthetase and ligase [Providencia rettgeri Dmel1]
Length = 505
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMV 100
+T S TVF + KASS G PV ++AI D+ G D+ AN G + ++ ++
Sbjct: 303 LTETSSPATVFREDIRYSDKKASS-GTPVPGLQVAIRDDKGEDKPANSTGNIWVKGDVVI 361
Query: 101 QRI--NNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
QR ++P AN T+F GWF +GD+GY D L
Sbjct: 362 QRYWPDSP-ANSTSFNDGWFFTGDIGYRDDDGFL 394
>gi|326797067|ref|YP_004314887.1| o-succinylbenzoate--CoA ligase [Marinomonas mediterranea MMB-1]
gi|326547831|gb|ADZ93051.1| o-succinylbenzoate--CoA ligase [Marinomonas mediterranea MMB-1]
Length = 599
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 56 PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQ 114
P + +K SVG P+ ++ I + GV+ N G++ ++ + + +NN +A + A +
Sbjct: 329 PNDSTYKTGSVGVPIDMDVKIVSKEGVELSENAEGEILLKGDNVFEGYLNNVQATEAAVK 388
Query: 115 FGWFLSGDLGYFDSQRCL 132
WFL+GDLGY D + L
Sbjct: 389 DEWFLTGDLGYRDEEGFL 406
>gi|158426160|ref|YP_001527452.1| acyl-CoA synthetase [Azorhizobium caulinodans ORS 571]
gi|158333049|dbj|BAF90534.1| putative fatty acid CoA ligase [Azorhizobium caulinodans ORS 571]
Length = 549
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 59/200 (29%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GPH K + G + ++ I D+ G + A G++C+ GP
Sbjct: 334 VTGNITVLPPALHEPEDGPHVKIGTCGFERTGMQVQIQDDQGREVNAFETGEICVC-GPA 392
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVD-- 143
V NPEAN +F+ GWF +GDLG+ D++ R +M+ + P EV+
Sbjct: 393 VFAGYYENPEANAKSFRNGWFRTGDLGHMDAEGFVYITGRASDMYISGGSNVYPREVEEK 452
Query: 144 ---------------------------------------AVKEFCKRNVASFKVPKKVFI 164
+ F V+ +K+PK+VF
Sbjct: 453 LLQHPALVEVAILGVPDPMWGEVGVAVCVTRDGAPVNEAEIIAFLDGKVSRYKLPKRVFF 512
Query: 165 ADSLSGKPLTGKIQRRIVAE 184
++L K GKI +++V E
Sbjct: 513 WEALP-KSAYGKITKKMVRE 531
>gi|306832151|ref|ZP_07465305.1| acyl-CoA synthetase [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325979074|ref|YP_004288790.1| acetyl-CoA synthetase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|304425590|gb|EFM28708.1| acyl-CoA synthetase [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325179002|emb|CBZ49046.1| Acetyl-coenzyme A synthetase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 507
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 27/147 (18%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMC 93
P LE G +T + S CT L P + K SVGKP E+ I D + + KA + G++
Sbjct: 298 PILE-GYGMTESCSQCT---LNPIDAI-KVGSVGKPYGSEVKIVDGDDLTMKAGIEGEIA 352
Query: 94 IREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW--------------KISP 139
IR ++ +P + +F+ GW L+GDLGY+D L W KI+P
Sbjct: 353 IRGPHVITDYLSP--SPKSFRDGWLLTGDLGYYDEDGYL--WLNGRSKNVINRGGEKINP 408
Query: 140 TEVDAV---KEFCKRNVASFKVPKKVF 163
T ++ V +F R +A+ +P ++
Sbjct: 409 TVIENVIGNLDFV-RGIAAVPLPDDIY 434
>gi|384044534|ref|YP_005492551.1| o-succinylbenzoate--CoA ligase [Bacillus megaterium WSH-002]
gi|345442225|gb|AEN87242.1| O-succinylbenzoate-CoA ligase [Bacillus megaterium WSH-002]
Length = 487
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 29/152 (19%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L P++ K S GKP+ EM I DENG + + G++ ++ GP V + +N PEA K
Sbjct: 301 LSPEDSLRKLGSAGKPLFPCEMKIVDENGNETREA--GEIIVK-GPNVTKGYLNKPEATK 357
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVD-------AVKEFCKR 151
A Q GWF +GD+G D + L + + P E++ AVKE
Sbjct: 358 KAIQQGWFYTGDVGKVDEEGFLYVLDRRSDLIISGGENVYPAEIENVLLKHPAVKEAGVT 417
Query: 152 NVASFK---VPKK-VFIADSLSGKPLTGKIQR 179
VA K VP + + +++S + L+ IQ+
Sbjct: 418 GVADEKWGQVPAACIVVNENVSDEELSLHIQQ 449
>gi|332710857|ref|ZP_08430794.1| AMP-forming acyl-CoA synthetase [Moorea producens 3L]
gi|332350410|gb|EGJ30013.1| AMP-forming acyl-CoA synthetase [Moorea producens 3L]
Length = 512
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 61/215 (28%)
Query: 21 NVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDE 79
++F + R +P R +GC T A SV + L ++ SVG P+ E+ I +E
Sbjct: 301 DIFDKFWQRFRIPIRQLYGC--TEAGSVA---INLEEDINKIYHSVGFPLNNVELKIVNE 355
Query: 80 NGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFLSGDLG--------YFDSQR 130
+G +Q ++G++ I+ + Q IN PE N+ AF+ G F +GDLG Y ++
Sbjct: 356 SGNEQPMGMSGEVVIKSRSLTQGYINQPELNQQAFKEGCFYTGDLGKKDEWGRVYITGRK 415
Query: 131 CLNM----WKISPTEVD-------AVKE-------------------------------- 147
L + K+ P EV+ VKE
Sbjct: 416 KLLIDTGGRKVDPIEVEDILMNHPHVKEAVVVGVKGSYAGELVKAVIVKKGLKNCEYQEI 475
Query: 148 --FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
FCK+ +A FKVPK + + PL GKI R+
Sbjct: 476 LSFCKQRLAEFKVPKIIEFRPEIPKSPL-GKIMRK 509
>gi|428200790|ref|YP_007079379.1| acyl-CoA synthetase [Pleurocapsa sp. PCC 7327]
gi|427978222|gb|AFY75822.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pleurocapsa
sp. PCC 7327]
Length = 520
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 76/197 (38%), Gaps = 56/197 (28%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ 101
+T A + T L PK K +VG ++ I DE G + G++ ++ +V
Sbjct: 322 MTEAAHLMTTNPLPPK--VRKPGTVGYGFGVDVGIMDEAGNLLEKGQLGEVVVKGANVVD 379
Query: 102 RI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV--- 145
NNPEAN AF GWF +GD G D L + KISP EVD V
Sbjct: 380 GYENNPEANAKAFTNGWFRTGDQGMLDEDGYLRLTGRLKELINRGGEKISPLEVDDVLLR 439
Query: 146 -------------------------------------KEFCKRNVASFKVPKKVFIADSL 168
+ C +A FKVP++ I D L
Sbjct: 440 HRAVAEAIAFAVPHKMLGEDIHAALVLKDKSVSEQELRAHCSALLAEFKVPRQFHILDEL 499
Query: 169 SGKPLTGKIQRRIVAEL 185
+ TGK+QR +A+L
Sbjct: 500 P-RGATGKLQRLNMAKL 515
>gi|15965442|ref|NP_385795.1| acyl-CoA synthetase [Sinorhizobium meliloti 1021]
gi|334316329|ref|YP_004548948.1| o-succinylbenzoate--CoA ligase [Sinorhizobium meliloti AK83]
gi|384529512|ref|YP_005713600.1| o-succinylbenzoate--CoA ligase [Sinorhizobium meliloti BL225C]
gi|384536161|ref|YP_005720246.1| acyl-CoA synthase [Sinorhizobium meliloti SM11]
gi|433613473|ref|YP_007190271.1| Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[Sinorhizobium meliloti GR4]
gi|15074623|emb|CAC46268.1| Putative fatty-acid-CoA ligase [Sinorhizobium meliloti 1021]
gi|333811688|gb|AEG04357.1| o-succinylbenzoate--CoA ligase [Sinorhizobium meliloti BL225C]
gi|334095323|gb|AEG53334.1| o-succinylbenzoate--CoA ligase [Sinorhizobium meliloti AK83]
gi|336033053|gb|AEH78985.1| acyl-CoA synthase [Sinorhizobium meliloti SM11]
gi|429551663|gb|AGA06672.1| Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[Sinorhizobium meliloti GR4]
Length = 549
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 59/200 (29%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT AI+V ++GP + + G + ++ I DE+G + A G++C+ GP
Sbjct: 329 VTGAITVLPPAFHSSEDGPDARIGTCGFERTGMQLQIQDEDGNEVPAGATGEICVI-GPA 387
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVD-- 143
V NPEAN AF+ GWF +GDLG+ D+Q R +M+ + P E++
Sbjct: 388 VFAGYYRNPEANAKAFRNGWFRTGDLGHVDAQGFLYITGRASDMYISGGSNVYPREIEEK 447
Query: 144 ---------------------------------------AVKEFCKRNVASFKVPKKVFI 164
A++E+ +A +K+PKK+
Sbjct: 448 LLMHPDISEAAIVGVPDPVWGEVGIAVCVARGGATVGAAALREWLDGKIARYKLPKKIVF 507
Query: 165 ADSLSGKPLTGKIQRRIVAE 184
+ K GKI ++++ E
Sbjct: 508 WSEMP-KSAYGKITKKLIRE 526
>gi|284992540|ref|YP_003411094.1| AMP-dependent synthetase and ligase [Geodermatophilus obscurus DSM
43160]
gi|284065785|gb|ADB76723.1| AMP-dependent synthetase and ligase [Geodermatophilus obscurus DSM
43160]
Length = 499
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 81/203 (39%), Gaps = 59/203 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPH---KASSVGKPVRR-EMAIPDENGVDQKANVNGKMC 93
FGC V + + N PH K ++G P+R EM + D+ G D + G++
Sbjct: 290 FGCIVLEGYGLSETSPVASFNHPHAERKPGTIGTPIRGVEMRLVDDEGRDVRPGDVGEIA 349
Query: 94 IR-EGPMVQRINNPEANKTAFQFGWFLSGDL------GYF---DSQRCLNM---WKISPT 140
IR E M PE A GWF +GDL GYF D ++ + + + + P
Sbjct: 350 IRGENVMKGYWGKPEETAKAIPDGWFRTGDLARQDEDGYFAIVDRKKEMIIRGGYNVYPR 409
Query: 141 EVD-------AVKE----------------------------------FCKRNVASFKVP 159
E++ AV E + K VA++K P
Sbjct: 410 EIEEALYEHPAVAEAACVGIPHPDLGEEVAAAVALKPGTQADAGELQAWVKERVAAYKYP 469
Query: 160 KKVFIADSLSGKPLTGKIQRRIV 182
+ V++ +SL P TGKI RR V
Sbjct: 470 RHVWLVESLPKGP-TGKILRRAV 491
>gi|156043137|ref|XP_001588125.1| hypothetical protein SS1G_10571 [Sclerotinia sclerotiorum 1980]
gi|154694959|gb|EDN94697.1| hypothetical protein SS1G_10571 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 513
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 73/181 (40%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + SVG E+ I D G + G++ IR E +NN +ANK +F Q G
Sbjct: 324 GKRQPGSVGIGQGVEVRILDGEGNEVSLGSEGEIFIRGENVTKGYLNNEKANKESFTQEG 383
Query: 117 WFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------- 145
+F +GD G D R + + KISP E+D V
Sbjct: 384 FFRTGDQGKMDKDRYVFITGRIKELINKGGEKISPIELDNVLARHPAVSEAVSFAIPDEM 443
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K++ VA FKVPK+V+ D + K TGKIQRRIVA
Sbjct: 444 YGQAVGVAIVLKSDQKLTASELKKWVADKVAEFKVPKQVYFTDVMP-KTATGKIQRRIVA 502
Query: 184 E 184
+
Sbjct: 503 D 503
>gi|154149649|ref|YP_001403267.1| AMP-dependent synthetase/ligase [Methanoregula boonei 6A8]
gi|153998201|gb|ABS54624.1| AMP-dependent synthetase and ligase [Methanoregula boonei 6A8]
Length = 519
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 70/223 (31%)
Query: 8 IHGAAQLTITPYTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPH---KAS 64
I G QL +V+ + R ++P +G T I T LP+ PH
Sbjct: 283 ISGGGQL----LPSVWAAFDKRFHIPVANSYGLSETIVIGSGTT--TLPEY-PHLTKNYQ 335
Query: 65 SVGKPV-RREMAIPDENGVDQKANVN--GKMCIREGPMVQR--INNPEANKTAFQF-GWF 118
SVG V E+ I D + +++ G++ +R GP V + N PEA T F+ GWF
Sbjct: 336 SVGVAVGYTEVRIVDVDDPEKELGPGEAGEIALR-GPSVAKGYWNLPEATATVFRHDGWF 394
Query: 119 LSGDLGYFDSQRCLNM------------WKISPTEVDAV--------------------- 145
L+GD+GY D + L + WKI PTEV+ V
Sbjct: 395 LTGDIGYIDEEGILYITDRKKDMIIMSGWKIYPTEVENVIVQHPAVADVAVFGVPDERRG 454
Query: 146 --------------------KEFCKRNVASFKVPKKVFIADSL 168
+ FC++++A +KVP+ + I D L
Sbjct: 455 ESPVAAVVLKAGAALAEPEFETFCRQHLAGYKVPRTLVIVDDL 497
>gi|407720650|ref|YP_006840312.1| acyl-CoA synthetase [Sinorhizobium meliloti Rm41]
gi|407318882|emb|CCM67486.1| acyl-CoA synthetase [Sinorhizobium meliloti Rm41]
Length = 549
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 59/200 (29%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT AI+V ++GP + + G + ++ I DE+G + A G++C+ GP
Sbjct: 329 VTGAITVLPPAFHSSEDGPDARIGTCGFERTGMQLQIQDEDGNEVPAGATGEICVI-GPA 387
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVD-- 143
V NPEAN AF+ GWF +GDLG+ D+Q R +M+ + P E++
Sbjct: 388 VFAGYYRNPEANAKAFRNGWFRTGDLGHVDAQGFLYITGRASDMYISGGSNVYPREIEEK 447
Query: 144 ---------------------------------------AVKEFCKRNVASFKVPKKVFI 164
A++E+ +A +K+PKK+
Sbjct: 448 LLMHPDISEAAIVGVPDPVWGEVGIAVCVARGGATVGAAALREWLDGKIARYKLPKKIVF 507
Query: 165 ADSLSGKPLTGKIQRRIVAE 184
+ K GKI ++++ E
Sbjct: 508 WSEMP-KSAYGKITKKLIRE 526
>gi|334131223|ref|ZP_08504989.1| Putative peroxisomal-coenzyme A synthetase [Methyloversatilis
universalis FAM5]
gi|333443853|gb|EGK71814.1| Putative peroxisomal-coenzyme A synthetase [Methyloversatilis
universalis FAM5]
Length = 508
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 68/172 (39%), Gaps = 55/172 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLS 120
K SVG E+ I D++G A G++ IR + NN +ANK AF GWF +
Sbjct: 327 KPGSVGLAAGPEVEIMDDDGNILPAGEIGEIVIRGANVTPGYENNEKANKEAFTHGWFRT 386
Query: 121 GDLGYFDSQRCLNMW------------KISPTEVDAV----------------------- 145
GD G D++ L++ KISP EVD V
Sbjct: 387 GDQGSKDAEGYLSLTGRLKEIINRGGEKISPREVDEVLMDHPAVAQVVTFGIPHPKLGEE 446
Query: 146 ---------------KE---FCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
KE F +A FKVP+K+ D + K TGK+QR
Sbjct: 447 VGAVVVLREGQQATDKEISAFAATRLADFKVPRKILFMDEIP-KGATGKLQR 497
>gi|159898408|ref|YP_001544655.1| AMP-dependent synthetase/ligase [Herpetosiphon aurantiacus DSM 785]
gi|159891447|gb|ABX04527.1| AMP-dependent synthetase and ligase [Herpetosiphon aurantiacus DSM
785]
Length = 495
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 59/179 (32%)
Query: 61 HKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFG 116
+K S+G P+ EM I D + G + A G++ +R GP M+ NNP A + A + G
Sbjct: 316 YKFGSIGMPIDTVEMRIVDVDTGANLAAEQVGEIIVR-GPNVMLGYWNNPTATEQAIRNG 374
Query: 117 WFLSGDLGYFDSQ-------RCLNM-----WKISPTEVD-------AVKE---------- 147
WF +GDLG +D++ R +M K+ P EV+ AV E
Sbjct: 375 WFHTGDLGKYDAEGYFYIVDRLKDMINVAGIKVYPAEVEQVIYQLPAVAEVAVYGIADEV 434
Query: 148 ------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
C++ +ASFK+P + +S+ K TGK+ +R++
Sbjct: 435 TGERVMAKVVIKSGHQLSEREIFALCRKQIASFKIPSSIEFVESIP-KNATGKVLKRLL 492
>gi|194289897|ref|YP_002005804.1| o-succinylbenzoate--CoA ligase [Cupriavidus taiwanensis LMG 19424]
gi|193223732|emb|CAQ69739.1| O-succinylbenzoate--CoA ligase [Cupriavidus taiwanensis LMG 19424]
Length = 517
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 58/187 (31%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRREMA-IPDENGVDQKANVNGKMCIREGPMVQ--RINNP 106
TVFV K S+GKPV + I D G D G++ I+ GP V N P
Sbjct: 322 TVFVCDEDTARRKLGSIGKPVGSMLTRIVDPLGADVGPGERGELLIK-GPGVTPGYWNLP 380
Query: 107 EANKTAFQFGWFLSGDLGYFDS-------QRCLNMW-----KISPTEV------------ 142
EA A + GW SGD+ YFD+ R +M+ + P EV
Sbjct: 381 EATAQALRDGWLHSGDIAYFDADGDYYIVDRAKDMFISGGENVYPAEVENVLFQLPEVAE 440
Query: 143 -----------------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPL 173
DAV C+ ++A +KVP+ V D+L P
Sbjct: 441 AAVIGMPDARWGEVGMALVVLRPGSVLDADAVVAHCRAHLAGYKVPRHVRFVDALPRTP- 499
Query: 174 TGKIQRR 180
+GK+++
Sbjct: 500 SGKVEKH 506
>gi|296269579|ref|YP_003652211.1| AMP-dependent synthetase and ligase [Thermobispora bispora DSM
43833]
gi|296092366|gb|ADG88318.1| AMP-dependent synthetase and ligase [Thermobispora bispora DSM
43833]
Length = 540
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 56/188 (29%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
+L P++ KA + GKP + E I D +G + G++ R +++ +N+PE
Sbjct: 339 LLRPEDQIRKAGAAGKPALNVETRIVDSDGNELPPGEIGEIVHRSPHAILEYLNDPEKTA 398
Query: 111 TAFQFGWFLSGDLGYFDSQ-------RCLNMWKIS------------------------- 138
AF+ GWF SGDLG D + R +M K
Sbjct: 399 EAFRGGWFHSGDLGVMDEEGYITVVDRIKDMIKTGGENVASREVEEVLYQHPAVAEAAVV 458
Query: 139 ----PTEVDAV-----------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
P+ ++AV + + ++A FKVPK V ADSL P +GKI
Sbjct: 459 GVRHPSWIEAVVAIIVPKPGMTVTEEEIRAHARAHLAPFKVPKAVAFADSLPKNP-SGKI 517
Query: 178 QRRIVAEL 185
+R + E+
Sbjct: 518 LKRELREM 525
>gi|418402239|ref|ZP_12975755.1| acyl-CoA synthetase [Sinorhizobium meliloti CCNWSX0020]
gi|359503792|gb|EHK76338.1| acyl-CoA synthetase [Sinorhizobium meliloti CCNWSX0020]
Length = 549
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT AI+V ++GP + + G + ++ I DE+G + A G++C+ GP
Sbjct: 329 VTGAITVLPPAFHSSEDGPDARIGTCGFERTGMQLQIQDEDGNEVPAGATGEICVI-GPA 387
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V NPEAN AF+ GWF +GDLG+ D+Q L
Sbjct: 388 VFAGYYRNPEANAKAFRNGWFRTGDLGHVDAQGFL 422
>gi|357977380|ref|ZP_09141351.1| long-chain-fatty-acid--CoA ligase [Sphingomonas sp. KC8]
Length = 554
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 77/186 (41%), Gaps = 58/186 (31%)
Query: 55 LPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKT 111
LP + A SVG P + E I D+ G G++ +R GP MV N P K
Sbjct: 353 LPVDPESGALSVGIPYIGTEAMIVDDTGKPAPVGEAGEIWMR-GPQVMVGYWNKPAETKA 411
Query: 112 AFQFGWFLSGDLGYFDS----------QRCL--NMWKISPTEVD-------AVKE----- 147
A GW SGD+G+ D+ + C+ + +K+ P EV+ AV+E
Sbjct: 412 ALHDGWMRSGDVGFMDAAGWFYLVDRKKDCIIASGFKVWPREVEDALHAHPAVREAAVVG 471
Query: 148 -----------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
C+ N+A++KVP+ + IA L K TGKIQ
Sbjct: 472 APDAYRGETVIAHVSLRAGSIADEAELIAHCRENLAAYKVPRIIRIAGELP-KTATGKIQ 530
Query: 179 RRIVAE 184
R ++ E
Sbjct: 531 RNVLRE 536
>gi|325091493|gb|EGC44803.1| AMP dependent CoA ligase [Ajellomyces capsulatus H88]
Length = 550
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKA-NVNGKMCIREGPM 99
+T + T+F P+N SVG+PV EM + D+ G + A +V G++C+R GP
Sbjct: 333 MTETTCIATMF-RYPEN--DDTGSVGRPVASLEMKLIDDEGKNISAYDVRGEICVR-GPT 388
Query: 100 VQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFK 157
V + NP AN +F WF +GD+GY D + W I +D KE K V F+
Sbjct: 389 VIKGYFENPSANAQSFDGEWFKTGDIGYCDEK--TKKWYI----IDRKKELIK--VRGFQ 440
Query: 158 V 158
V
Sbjct: 441 V 441
>gi|375097954|ref|ZP_09744219.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora marina XMU15]
gi|374658687|gb|EHR53520.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora marina XMU15]
Length = 533
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 48 VCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRIN 104
+ TVF P+ A SVG PV ++ I D+ G G++ R GP M +
Sbjct: 335 ITTVFP--PEYQLSHAGSVGLPVPNVQVGIMDDGGNLLSQGETGEIVYR-GPHAMEGYLR 391
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFI 164
NPEA AF GWF SGD+G FD+ L W + + D +K NVAS +V K ++
Sbjct: 392 NPEATAEAFAHGWFHSGDVGRFDADGLL--W-FADRKKDVIKT-GGENVASIEVEKVLYE 447
Query: 165 AD 166
A+
Sbjct: 448 AE 449
>gi|28950137|emb|CAD70995.1| probable fatty acid transporter FAT2 [Neurospora crassa]
Length = 522
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 74/187 (39%), Gaps = 58/187 (31%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP G K +VG E+ I D+ G++ IR E +NNPEAN ++F
Sbjct: 325 LPSVGKRKPGTVGLGQGVEVVILDDKDNILPDGQEGEISIRGENVTKGYLNNPEANASSF 384
Query: 114 --QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------- 145
+ G+F +GD G D + + KISP E+D V
Sbjct: 385 TRKGGYFRTGDQGKKDEDGYIVITGRIKELINKGGEKISPIELDNVLTRHPAVSEAVSFA 444
Query: 146 ----------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
K++ +A FKVPKK++ D + K TGKI
Sbjct: 445 IPDEMYGQEVAVAIVLKPGQQKVDAEEFKQWVGSKLAKFKVPKKIYFTDVMP-KTATGKI 503
Query: 178 QRRIVAE 184
QRRIVAE
Sbjct: 504 QRRIVAE 510
>gi|154300982|ref|XP_001550905.1| hypothetical protein BC1G_10629 [Botryotinia fuckeliana B05.10]
gi|347831151|emb|CCD46848.1| similar to peroxisomal-coenzyme A synthetase [Botryotinia
fuckeliana]
Length = 513
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + SVG E+ I D G + G++ IR E +NN +ANK +F + G
Sbjct: 324 GKRQPGSVGIGQGVEVRILDGEGKEVPIGSEGEISIRGENVTKGYLNNEKANKESFTEDG 383
Query: 117 WFLSGDLGYFDSQRCLNMW------------KISPTEVDAV------------------- 145
+F +GD G D R + + KISP E+D V
Sbjct: 384 FFRTGDQGKMDKDRYVFITGRIKELINKGGEKISPIELDNVLARHPAVSEAVSFAIPDEM 443
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K++ VA FKVPK+V+ +D + K TGKIQRRIVA
Sbjct: 444 YGQDVGVAIVLKPDQKLTASELKQWVADKVAKFKVPKQVYFSDVMP-KTATGKIQRRIVA 502
Query: 184 E 184
+
Sbjct: 503 D 503
>gi|418050225|ref|ZP_12688311.1| Long-chain-fatty-acid--CoA ligase [Mycobacterium rhodesiae JS60]
gi|353187849|gb|EHB53370.1| Long-chain-fatty-acid--CoA ligase [Mycobacterium rhodesiae JS60]
Length = 522
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P + A + G+PV E I DE+ A G++ R M+ +++PE
Sbjct: 332 LGPADQETHAGAAGRPVLNVETVILDESDTPVAAGTVGEIAHRSPHLMLGYLDDPEKTAE 391
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFI 164
AF+ GWF SGDLG++D L++ VD K+ K NVAS +V + +++
Sbjct: 392 AFRGGWFHSGDLGFYDDAGFLHV-------VDRKKDMIKSGGENVASREVEEVLYL 440
>gi|164423744|ref|XP_960802.2| peroxisomal-coenzyme A synthetase [Neurospora crassa OR74A]
gi|157070218|gb|EAA31566.2| peroxisomal-coenzyme A synthetase [Neurospora crassa OR74A]
Length = 520
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 74/187 (39%), Gaps = 58/187 (31%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP G K +VG E+ I D+ G++ IR E +NNPEAN ++F
Sbjct: 325 LPSVGKRKPGTVGLGQGVEVVILDDKDNILPDGQEGEISIRGENVTKGYLNNPEANASSF 384
Query: 114 --QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------- 145
+ G+F +GD G D + + KISP E+D V
Sbjct: 385 TRKGGYFRTGDQGKKDEDGYIVITGRIKELINKGGEKISPIELDNVLTRHPAVSEAVSFA 444
Query: 146 ----------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
K++ +A FKVPKK++ D + K TGKI
Sbjct: 445 IPDEMYGQEVAVAIVLKPGQQKVDAEEFKQWVGSKLAKFKVPKKIYFTDVMP-KTATGKI 503
Query: 178 QRRIVAE 184
QRRIVAE
Sbjct: 504 QRRIVAE 510
>gi|419967321|ref|ZP_14483225.1| acyl-CoA synthetase [Rhodococcus opacus M213]
gi|414567271|gb|EKT78060.1| acyl-CoA synthetase [Rhodococcus opacus M213]
Length = 538
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRC 131
++I D++G + G++C+ GP V ++NPEAN+ AF+ GWF +GDLGY D
Sbjct: 361 ISIQDDDGRELATGERGEICVC-GPAVFAGYLDNPEANRKAFRDGWFRTGDLGYLDESGL 419
Query: 132 L 132
L
Sbjct: 420 L 420
>gi|347752270|ref|YP_004859835.1| AMP-dependent synthetase/ligase [Bacillus coagulans 36D1]
gi|347584788|gb|AEP01055.1| AMP-dependent synthetase and ligase [Bacillus coagulans 36D1]
Length = 516
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 58/182 (31%)
Query: 54 LLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L P++ K S+VGKP+ + I D+ G A G++ I+ P V PEA
Sbjct: 327 LDPQDAAKKGSTVGKPMPLTAIQIADDAGNPLPAGEVGEILIKS-PAVSEGYWKKPEATM 385
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVD--------------- 143
F GW +GDLG+FDS+ L + I P E++
Sbjct: 386 ETFADGWCKTGDLGFFDSEGFLTIAGRKKDMIRSGGENIYPAEIEDVLYRHEAVKEVSVI 445
Query: 144 --------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
V E+CKR++AS+K P+KV + P +GK+
Sbjct: 446 GIPDPKYMEAVCAIIVRKDGARLTEKEVTEYCKRHLASYKKPRKVIFVKEIPRTP-SGKV 504
Query: 178 QR 179
Q+
Sbjct: 505 QK 506
>gi|336472056|gb|EGO60216.1| peroxisomal-coenzyme A synthetase [Neurospora tetrasperma FGSC
2508]
Length = 573
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 74/186 (39%), Gaps = 57/186 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP G K +VG E+ I D+ G++ IR E +NNPEAN ++F
Sbjct: 325 LPSVGKRKPGTVGLGQGVEVVILDDKDNILPDGQEGEISIRGENVTKGYLNNPEANASSF 384
Query: 114 --QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------- 145
+ G+F +GD G D + + KISP E+D V
Sbjct: 385 TRRGGYFRTGDQGKKDEDGYIVITGRIKELINKGGEKISPIELDNVLTRHPAVSEAVSFA 444
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
K++ +A FKVPKK++ D + K TGKIQ
Sbjct: 445 IPDEMYGQEVAVAIVLKPGQKASAEEFKKWVGSKLAKFKVPKKIYFTDVMP-KTATGKIQ 503
Query: 179 RRIVAE 184
RRIVAE
Sbjct: 504 RRIVAE 509
>gi|212638233|ref|YP_002314753.1| O-succinylbenzoic acid--CoA ligase [Anoxybacillus flavithermus WK1]
gi|212559713|gb|ACJ32768.1| O-succinylbenzoic acid-CoA ligase [Anoxybacillus flavithermus WK1]
Length = 488
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 55/168 (32%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
LP + HK S GKP+ +++G AN G++ ++ GP V + NN +A
Sbjct: 303 LPPDARHKHGSAGKPLFHMGIRIEKDGQQLNANEVGEIVVK-GPSVMKGYWNNEQATAAV 361
Query: 113 FQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV--------------- 145
+ GW +GD+GY D + L + + P E+++V
Sbjct: 362 LKDGWLYTGDIGYMDEEGFLYVLDRRSDLIISGGENVYPAEIESVLLQHEAVKEAGVVGV 421
Query: 146 -------------------------KEFCKRNVASFKVPKKVFIADSL 168
K+FC +A +KVPK+++ D L
Sbjct: 422 ADGTWGQVPCAFVVLHDVTATEEQLKQFCMNKLAKYKVPKRIYFVDHL 469
>gi|192973037|gb|ACF06937.1| acyl-CoA synthetase CaiC [uncultured Roseobacter sp.]
Length = 502
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 59/193 (30%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP--M 99
+T + C V L P+ HK S GK + + I D NG++ V G++ I +GP M
Sbjct: 304 LTETAAQCLVNPLDPR--LHKIGSAGKAISNQARIADGNGIECACGVEGEIQI-QGPNVM 360
Query: 100 VQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL------------NMWKISPTEVDAV-- 145
+ + NP+A F W +GDLG D + I+P E+D V
Sbjct: 361 KEYLRNPDATAATFHGDWLRTGDLGRMDEDGYVFVTGRLKELIIKGGENIAPREIDEVLY 420
Query: 146 ---------------------------------------KEFCKRNVASFKVPKKVFIAD 166
+ C+ V FK P+KV I
Sbjct: 421 EHPDVVEAAAFARPCAQYGERVEAAVRLNETSNATPEQLRALCEAKVGIFKSPEKVHILP 480
Query: 167 SLSGKPLTGKIQR 179
L K +GKIQR
Sbjct: 481 ELP-KGASGKIQR 492
>gi|434405932|ref|YP_007148817.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Cylindrospermum stagnale PCC 7417]
gi|428260187|gb|AFZ26137.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Cylindrospermum stagnale PCC 7417]
Length = 879
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 67/173 (38%), Gaps = 57/173 (32%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLS 120
K SVG +AI DE G Q G++ I+ + Q NNP+AN AF GW +
Sbjct: 342 KVHSVGMAAGPAVAIIDEAGNFQAEGEIGEIVIQGSNVTQGYENNPQANFMAFANGWLKT 401
Query: 121 GDLGYFDSQRCLNMW------------KISPTEVDAV----------------------- 145
GDLGY DS L + KISP E++ V
Sbjct: 402 GDLGYLDSDGYLFVTGRLKEQINRGGEKISPREIEEVLLDYPGVAEAVTFAVPHPTLGED 461
Query: 146 ------------------KEFCKRNVASFKVPKK-VFIADSLSGKPLTGKIQR 179
+ F +A FKVP + VF+A+ G TGK+QR
Sbjct: 462 IAAAIVLRQNAHVTEKEIRAFVATKLAEFKVPTQVVFLAEIPKGS--TGKLQR 512
>gi|350294739|gb|EGZ75824.1| peroxisomal-coenzyme A synthetase [Neurospora tetrasperma FGSC
2509]
Length = 573
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 74/186 (39%), Gaps = 57/186 (30%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
LP G K +VG E+ I D+ G++ IR E +NNPEAN ++F
Sbjct: 325 LPSVGKRKPGTVGLGQGVEVVILDDKDNILPDGQEGEISIRGENVTKGYLNNPEANASSF 384
Query: 114 --QFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------- 145
+ G+F +GD G D + + KISP E+D V
Sbjct: 385 TRRGGYFRTGDQGKKDEDGYIVITGRIKELINKGGEKISPIELDNVLTRHPAVSEAVSFA 444
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
K++ +A FKVPKK++ D + K TGKIQ
Sbjct: 445 IPDEMYGQEVAVAIVLKPGQKASAEEFKKWVGSKLAKFKVPKKIYFTDVMP-KTATGKIQ 503
Query: 179 RRIVAE 184
RRIVAE
Sbjct: 504 RRIVAE 509
>gi|114768857|ref|ZP_01446483.1| AMP-dependent synthetase and ligase [Rhodobacterales bacterium
HTCC2255]
gi|114549774|gb|EAU52655.1| AMP-dependent synthetase and ligase [Rhodobacterales bacterium
HTCC2255]
Length = 507
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 61/185 (32%)
Query: 60 PHKASSVGKP---VRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAF- 113
P K +G P ++ I ++G DQ N+ G++ ++ GP M++ ++N EA ++ F
Sbjct: 323 PPKQRKIGSPGIAFGNDVKILKDDGSDQLVNIIGEIAVK-GPNIMLEYLDNIEATQSTFI 381
Query: 114 QFGWFLSGDLGYFD-------SQRCLNMW-----KISPTEVD------------------ 143
GW L+GDLGY D S R + ISP E+D
Sbjct: 382 NGGWLLTGDLGYMDDDGYVFVSGRLKELIIKGGENISPREIDDALYAHKDVIEAAAFAIP 441
Query: 144 ----------AVK-------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
A++ E C+ + FK P +++ D L P +GKIQR
Sbjct: 442 CDIYGQRIEAAIRLSINSIASEDEFIELCRSKLGKFKAPDRIYFLDELPKGP-SGKIQRI 500
Query: 181 IVAEL 185
+ E+
Sbjct: 501 KLLEI 505
>gi|90419842|ref|ZP_01227751.1| putative AMP-dependent synthetase [Aurantimonas manganoxydans
SI85-9A1]
gi|90335883|gb|EAS49631.1| putative AMP-dependent synthetase [Aurantimonas manganoxydans
SI85-9A1]
Length = 543
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRC 131
++I DE G + N G++C+ GP V +NP+AN AF+ GWF +GDLG+ D++
Sbjct: 366 ISIQDEAGAELGPNETGEICV-TGPAVFAGYYDNPDANAKAFRNGWFRTGDLGHLDAEGY 424
Query: 132 LNM 134
L++
Sbjct: 425 LSI 427
>gi|440638630|gb|ELR08549.1| hypothetical protein GMDG_03244 [Geomyces destructans 20631-21]
Length = 517
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 85/209 (40%), Gaps = 59/209 (28%)
Query: 31 YLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNG 90
Y P LE +T A T L P G + SVG E+ I D+ G +
Sbjct: 301 YNAPVLE-AYAMTEAAHQMTSSPLPP--GKRQPGSVGIGQGVEIRILDQAGKEVPQGAEA 357
Query: 91 KMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGDLGYFDS----------QRCLNMW--K 136
++CIR E +NNP AN+++F + G+F +GD G D + +N K
Sbjct: 358 EICIRGENVTKGYLNNPAANESSFTKDGFFRTGDQGKLDKDGYVFITGRIKELINKGGEK 417
Query: 137 ISPTEVD-------AVKE----------------------------------FCKRNVAS 155
ISP E+D AV E + +A
Sbjct: 418 ISPIELDNVLARHPAVSEAVSFAIPDELYGQDIGVAIVLKPGQKLGEDELRGWVSEKLAK 477
Query: 156 FKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
FK+PKKV+ + + K TGKIQRRIVAE
Sbjct: 478 FKIPKKVYFTEVMP-KTATGKIQRRIVAE 505
>gi|271965651|ref|YP_003339847.1| acyl-CoA synthetase [Streptosporangium roseum DSM 43021]
gi|270508826|gb|ACZ87104.1| acyl-CoA synthetase [Streptosporangium roseum DSM 43021]
Length = 534
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
+L P++ KA S G+ + E + D G D A G++ R +++ +++PE
Sbjct: 333 MLQPEDQIRKAGSAGQAALNVETRVVDAEGRDVPAGEIGEIVHRSPHAILEYLDDPEKTA 392
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLG D + L T VD +K+ K NVAS +V + ++
Sbjct: 393 EAFRGGWFHSGDLGTMDEEGYL-------TVVDRIKDMIKTGGENVASREVEETIY 441
>gi|302913490|ref|XP_003050935.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731873|gb|EEU45222.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 517
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 56/178 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCI-REGPMVQRINNPEANKTAF-QFGWFL 119
KA +VG E+ I ++ G + G++CI E +NNPEAN +++ + G+F
Sbjct: 329 KAGTVGIGQGVEVRILNDQGEEVPQGSEGEICIIGENVTKGYLNNPEANTSSYHKNGFFR 388
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEVDAV---------------------- 145
+GD G D + + KISP E+D V
Sbjct: 389 TGDQGKKDEDGYIIITGRIKELINKGGEKISPIELDNVLTRHPKISEAVSFAIPDEVYGQ 448
Query: 146 -------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K + + VA FKVPKKV+ + + K TGKIQRRIVAE
Sbjct: 449 DIGVAVVLKNGEKLTASELKGWVEERVAKFKVPKKVYFTEVMP-KTATGKIQRRIVAE 505
>gi|443305885|ref|ZP_21035673.1| acyl-CoA synthetase [Mycobacterium sp. H4Y]
gi|442767449|gb|ELR85443.1| acyl-CoA synthetase [Mycobacterium sp. H4Y]
Length = 529
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 56/184 (30%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANKT 111
L P A S G+PV + AI ++ A V G++ R + +N+P
Sbjct: 335 LGPDEQDAHAGSAGRPVLNVDTAILGDDDNPVAAGVVGEIAHRSPHLTPGYLNDPGRTAA 394
Query: 112 AFQFGWFLSGDLGYFDSQRCL-------NMWKIS-------------------------- 138
AF+ GWF SGDLGYFD L +M K
Sbjct: 395 AFKGGWFHSGDLGYFDEHGLLHVVDRKKDMIKTGGENVASREVEEILYRHHGVQEVAVFG 454
Query: 139 ---PTEVDAVK-----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
P V+AV C+ ++A FK PK+VF D+L P +GK+
Sbjct: 455 LPHPVWVEAVVAAIVPRDGAVLTEEDLFSHCRTHLAGFKTPKRVFFVDALPKNP-SGKVL 513
Query: 179 RRIV 182
+R++
Sbjct: 514 KRVL 517
>gi|397728896|ref|ZP_10495686.1| AMP-binding enzyme family protein [Rhodococcus sp. JVH1]
gi|396935181|gb|EJJ02301.1| AMP-binding enzyme family protein [Rhodococcus sp. JVH1]
Length = 534
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 50 TVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPE 107
T + P++ +VG PV + AI ++G G++ R M + ++NPE
Sbjct: 329 TTTLFRPEHQLTHIGAVGTPVIGVQAAIMGQDGGLLPTGDEGEIVYRSPHTMTEYLDNPE 388
Query: 108 ANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFI 164
A AF GWF SGD+G FD L W D K+ K NV+S +V + ++
Sbjct: 389 ATAEAFDHGWFHSGDIGRFDDDGIL--WF-----TDRFKDVIKTGGENVSSLEVERAIYQ 441
Query: 165 AD 166
AD
Sbjct: 442 AD 443
>gi|296134184|ref|YP_003641431.1| o-succinylbenzoate--CoA ligase [Thermincola potens JR]
gi|296032762|gb|ADG83530.1| o-succinylbenzoate--CoA ligase [Thermincola potens JR]
Length = 503
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 19 YTNVFLFYKGRVYLPPRL------EFGC--FVTSAISVCT-VFVLLPKNGPHKASSVGKP 69
+ ++ L Y G P L +FG F +S C+ V P G K S+G P
Sbjct: 276 FAHLRLAYSGGAACPVELSRKFKEKFGIQIFEGYGLSECSPVCTTNPYYGEWKPGSIGVP 335
Query: 70 V-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYF 126
+ E+ I DE G + N G++C + GP V + N PEA A + GW SGD+GY
Sbjct: 336 IPGVEVKIIDEKGNEVPRNTPGELCFK-GPNVMKGYWNRPEATAEALKDGWMHSGDIGYM 394
Query: 127 DSQ 129
D +
Sbjct: 395 DEE 397
>gi|170743461|ref|YP_001772116.1| acyl-CoA synthetase [Methylobacterium sp. 4-46]
gi|168197735|gb|ACA19682.1| AMP-dependent synthetase and ligase [Methylobacterium sp. 4-46]
Length = 536
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GP + + G + E+ I D G G++C+ GP
Sbjct: 321 VTGNITVLPPHLHDPEDGPGVRIGTCGIERTGMEVQIQDAEGRALPPGETGEICVC-GPA 379
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM 134
V NNP+AN AF+ GWF +GDLG+ D+QR L +
Sbjct: 380 VFAGYWNNPKANAEAFRDGWFRTGDLGFLDAQRFLTI 416
>gi|297171781|gb|ADI22772.1| acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [uncultured
Rhizobium sp. HF0500_29J11]
Length = 515
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRC 131
++I DE G + N G++C+ GP V +NP+AN AF+ GWF +GDLG+ D++
Sbjct: 366 ISIQDEAGTELGPNETGEICV-TGPAVFAGYYDNPDANAKAFRNGWFRTGDLGHLDAEGY 424
Query: 132 LNM 134
L++
Sbjct: 425 LSI 427
>gi|331695449|ref|YP_004331688.1| long-chain-fatty-acid--CoA ligase [Pseudonocardia dioxanivorans
CB1190]
gi|326950138|gb|AEA23835.1| Long-chain-fatty-acid--CoA ligase [Pseudonocardia dioxanivorans
CB1190]
Length = 524
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 38 FGC-----FVTSAIS-VCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNG 90
FGC F + +S V T+F P++ +VG P+ ++AI +G A G
Sbjct: 312 FGCEFALLFGQTEMSPVTTLF--RPEHQLTHIGAVGTPITGVQVAIMGPDGTLLPAGEKG 369
Query: 91 KMCIREGP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEF 148
++ R GP M ++NPEA AF GWF SGD+G+F L D K+
Sbjct: 370 EIVYR-GPSTMNGYLDNPEATDEAFAHGWFHSGDVGWFGEDGVLWF-------ADRYKDV 421
Query: 149 CK---RNVASFKVPKKVFIAD 166
K NVAS +V + V+ A+
Sbjct: 422 IKTGGENVASLEVERAVYAAE 442
>gi|397730062|ref|ZP_10496825.1| AMP-binding enzyme family protein [Rhodococcus sp. JVH1]
gi|396934079|gb|EJJ01226.1| AMP-binding enzyme family protein [Rhodococcus sp. JVH1]
Length = 494
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 54 LLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L P +GP +A +VG +E+ I DENGV+ V+G++ +R GP V R + PE
Sbjct: 301 LNPVSGPRRAGTVGIAFPGQEIRIVDENGVELGPGVDGEVVVR-GPNVMRGYLGRPEDTA 359
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIADSLSG 170
GW +GD+G+ D + L + S K+ R + PK+ I D L+G
Sbjct: 360 RTVIDGWLHTGDVGHLDPEGYLTLVGRS-------KDMIIRGGENIY-PKE--IEDVLAG 409
Query: 171 KP 172
P
Sbjct: 410 DP 411
>gi|126649554|ref|ZP_01721795.1| long-chain fatty-acid-CoA ligase [Bacillus sp. B14905]
gi|126593879|gb|EAZ87802.1| long-chain fatty-acid-CoA ligase [Bacillus sp. B14905]
Length = 514
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 54 LLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
LL + K SVGKP+ + E+ + D G + A G++C+R GP V + + NPE
Sbjct: 325 LLDTDALTKIGSVGKPLGQTEVRVVDSEGKEVPAGEVGEICVR-GPQVMKGYLRNPEETA 383
Query: 111 TAFQFGWFLSGDLGYFDSQRCL 132
GW SGDLG FD + L
Sbjct: 384 RTIIDGWLYSGDLGRFDEEGYL 405
>gi|229492205|ref|ZP_04386013.1| long-chain-fatty-acid--CoA ligase [Rhodococcus erythropolis SK121]
gi|229320831|gb|EEN86644.1| long-chain-fatty-acid--CoA ligase [Rhodococcus erythropolis SK121]
Length = 549
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 92/239 (38%), Gaps = 76/239 (31%)
Query: 19 YTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKAS-------------- 64
+T++ L Y G + P + ++ ++ L P A
Sbjct: 313 FTSIRLLYSGGAPISPTAAEAVRAMTGAALHNIYGLTETTSPTHAVPVGADTPVDPTSGA 372
Query: 65 -SVGKPVRREMA-IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLS 120
SVG PV + I DE G G++ +R GP V R N PE + +A + GWF +
Sbjct: 373 LSVGVPVPNTVVRIEDEGGAILPIGEIGELVVR-GPQVVRGYWNKPEESASAIRDGWFHT 431
Query: 121 GDLGYFDS-------QRCLNM-----WKISPTEVD-------AVKE-------------- 147
GD+G+ D R +M +K+ P EV+ AV+E
Sbjct: 432 GDVGFMDEAGWFYVVDRKKDMIIASGYKVWPREVEDVLAEHPAVREAAVVGIADEYRGET 491
Query: 148 --------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
CK+ +A++K P+ V + + L K +TGKI RR ELR
Sbjct: 492 VKAFVSLVAGASVTPEDLIDHCKQRMAAYKYPRSVVLVEELP-KTVTGKILRR---ELR 546
>gi|423403479|ref|ZP_17380652.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BAG2X1-2]
gi|423475873|ref|ZP_17452588.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BAG6X1-1]
gi|401648576|gb|EJS66171.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BAG2X1-2]
gi|402434705|gb|EJV66742.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BAG6X1-1]
Length = 496
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 17/138 (12%)
Query: 7 SIHGA----AQLTITPYTNVFLFYKG---------RVYLPPRLEFGCFVTSAISVCTVFV 53
+IH A A+ T +V FY G R ++ FG + TVF+
Sbjct: 247 TIHQALINCAKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFM 306
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANK 110
L ++ HK S+GKPV E + DEN + G++ IR GP M + N P+A +
Sbjct: 307 LSEEDARHKVGSIGKPVLFCEYVLIDENKNKVEVGEVGELLIR-GPNVMKEYWNRPDATE 365
Query: 111 TAFQFGWFLSGDLGYFDS 128
Q GW +GDL D
Sbjct: 366 ETIQDGWLYTGDLAKVDE 383
>gi|254822914|ref|ZP_05227915.1| acyl-CoA synthetase [Mycobacterium intracellulare ATCC 13950]
Length = 532
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANK 110
L P S G+PV E AI D++ A V G++ R + +++PE
Sbjct: 337 ALGPDEQDAHGGSAGRPVLNVETAILDDDDNPVAAGVVGEIAHRSPHLTPGYLDDPERTA 396
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGYFD L++ VD K+ NVAS +V + ++
Sbjct: 397 AAFKGGWFHSGDLGYFDEHGLLHV-------VDRKKDMINSGGENVASREVEEILY 445
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 140 TEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
TE D V C+ +A FK PK+VF D L P +GK+ +R++ E
Sbjct: 480 TEEDLVSH-CRERLAGFKTPKRVFFVDELPKNP-SGKLLKRVLRE 522
>gi|219850940|ref|YP_002465372.1| AMP-dependent synthetase and ligase [Methanosphaerula palustris
E1-9c]
gi|219545199|gb|ACL15649.1| AMP-dependent synthetase and ligase [Methanosphaerula palustris
E1-9c]
Length = 512
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 60/163 (36%)
Query: 65 SVGKPV---RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQ-FGWF 118
SVG PV + P++ D + G++ +R GP V + PEA F+ GWF
Sbjct: 330 SVGVPVGYTEVNIVSPEDPDEDLPPDTPGEIALR-GPSVAQGYWQMPEATAAVFRPGGWF 388
Query: 119 LSGDLGYFDSQRCL------------NMWKISPTEV------------------------ 142
LSGD+GY D++ L + WK+ PTEV
Sbjct: 389 LSGDIGYLDTEGVLFITDRKKDMIIMSGWKVYPTEVENVLVQHPKIRDVAVFGSPDERRG 448
Query: 143 -----------------DAVKEFCKRNVASFKVPKKVFIADSL 168
D + FC+ ++A +K+P+ + I +SL
Sbjct: 449 EIPVAVVVPAGDEPPTYDEISTFCRSHLAGYKIPRGLIIVESL 491
>gi|367477151|ref|ZP_09476510.1| Fatty acid CoA ligase [Bradyrhizobium sp. ORS 285]
gi|365270480|emb|CCD88978.1| Fatty acid CoA ligase [Bradyrhizobium sp. ORS 285]
Length = 531
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V V ++GP + S G + +++I ++ G + K G++C+ GP
Sbjct: 319 VTGNITVLPAAVHEEEDGPQARIGSCGYERTGMQVSIQNDGGRELKPGETGEICVI-GPA 377
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
V +NPEAN AF+ GWF +GDLG+ D+Q
Sbjct: 378 VFAGYYDNPEANAKAFRDGWFRTGDLGHMDAQ 409
>gi|365987830|ref|XP_003670746.1| hypothetical protein NDAI_0F01840 [Naumovozyma dairenensis CBS 421]
gi|343769517|emb|CCD25503.1| hypothetical protein NDAI_0F01840 [Naumovozyma dairenensis CBS 421]
Length = 539
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 82/211 (38%), Gaps = 63/211 (29%)
Query: 35 RLE--FGCFVTSAISVCTVFVLLPKNG----PHKASSVGKPVRREMAIPDENGVDQKANV 88
RLE F C V A ++ + N K +VG+P E+ I D+N +
Sbjct: 317 RLERNFQCPVLEAYAMTEASHQMTSNNLPPMKRKPGTVGRPQGVEVFILDDNDNVLEQGK 376
Query: 89 NGKMCIR-EGPMVQRINNPEANKTAF--QFGWFLSGDLGYFDSQRCLNMW---------- 135
G++ IR E + NN +ANK F + +F +GD GYFD + L +
Sbjct: 377 IGEVSIRGENVTLGYKNNDKANKENFTERENFFRTGDQGYFDPEGFLVLTGRIKELINRG 436
Query: 136 --KISPTEVDAVK-----------------------------------------EFCKRN 152
KISP EVD V F
Sbjct: 437 GEKISPIEVDGVMLSNPKVDEAVSFGVPNEMYGQVVHAAVVLKPGAKMEHDEFITFLSDK 496
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
+A FK+P KV+ D L K TGKIQRRI+A
Sbjct: 497 LAKFKLPVKVYFVDKLP-KTATGKIQRRIIA 526
>gi|379754878|ref|YP_005343550.1| acyl-CoA synthetase [Mycobacterium intracellulare MOTT-02]
gi|378805094|gb|AFC49229.1| acyl-CoA synthetase [Mycobacterium intracellulare MOTT-02]
Length = 532
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANK 110
L P S G+PV E AI D+ A V G++ R + +N+PE
Sbjct: 337 ALGPDEQDAHGGSAGRPVLNVETAILDDADNPVAAGVVGEIAHRSPHLTPGYLNDPERTA 396
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF GWF SGDLGYFD L++ VD K+ NVAS +V + ++
Sbjct: 397 AAFTSGWFHSGDLGYFDEHGLLHV-------VDRKKDMINSGGENVASREVEEILY 445
Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 140 TEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
TE D V C+ +A FK PK+VF D L P +GK+ +R++ E
Sbjct: 480 TEEDLVSH-CRERLAGFKTPKRVFFVDELPKNP-SGKLLKRVLRE 522
>gi|198457989|ref|XP_002138487.1| GA24368 [Drosophila pseudoobscura pseudoobscura]
gi|198136183|gb|EDY69045.1| GA24368 [Drosophila pseudoobscura pseudoobscura]
Length = 498
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 40 CFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP 98
+TS + F++ G +SVGKPV M I DE+G + N G++ + G
Sbjct: 287 AMLTSGYGLTETFIITSSIGISNIASVGKPVAGVRMRIVDEDGKNLTYNEVGEIYVDRGQ 346
Query: 99 MVQ-RINNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
NPEA + GWF +GDLGYFD Q L + VD KE K
Sbjct: 347 TWNGYFGNPEATLQMQDGEGWFHTGDLGYFDEQNFLYI-------VDRKKEILK 393
>gi|451849402|gb|EMD62706.1| hypothetical protein COCSADRAFT_38577 [Cochliobolus sativus ND90Pr]
Length = 512
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G K SVG E+ I D+ G + ++CIR E +NNP AN ++F + G
Sbjct: 323 GQRKPGSVGIGQGVEIKILDDAGNEVPQGKEAEICIRGENVTKGYLNNPAANASSFTKGG 382
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVDAV------------------- 145
+F +GD G D+ + +N KISP E+D V
Sbjct: 383 FFRTGDQGKKDADGYVIITGRIKELINKGGEKISPIELDNVIAQHPAVSEAVSFAVEDEM 442
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K + VA FK+PK++F D + K TGKIQRR+VA
Sbjct: 443 YGQDIGLAIVLKEGKTLSAGELKTWLTDRVAKFKLPKEIFFTDIMP-KTATGKIQRRLVA 501
Query: 184 E 184
E
Sbjct: 502 E 502
>gi|395773073|ref|ZP_10453588.1| putative acyl-CoA synthetase [Streptomyces acidiscabies 84-104]
Length = 628
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ 101
+T A S+ T L P+ + SVG + E+A+ E G G++ +R ++
Sbjct: 315 MTEACSIITSNPLPPRE--RRPGSVGVSIGNELAVRGEGGKFLAPGEEGEIVLRGETVIS 372
Query: 102 RIN-NPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
R + NP+A+ AF GWF +GD GY D L + K+SP EVD V
Sbjct: 373 RYDDNPDADAKAFTDGWFGTGDSGYLDEDGYLFLTGRLKEIINRGGTKVSPVEVDEV 429
>gi|239607632|gb|EEQ84619.1| AMP-binding enzyme [Ajellomyces dermatitidis ER-3]
Length = 550
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKA-NVNGKMCIREGPM 99
+T V T F P+N SVG+PV EM + D++G + A V G++C+R GP
Sbjct: 333 MTETTCVATRFAY-PEN--DDTGSVGRPVASLEMRLIDDDGKNISAYGVRGEICVR-GPT 388
Query: 100 VQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFK 157
+ + NP AN +F WF +GD+GY D + W I VD KE K V F+
Sbjct: 389 IIKGYFENPGANAESFDGDWFKTGDIGYCDEK--TKKWYI----VDRKKELIK--VRGFQ 440
Query: 158 V 158
V
Sbjct: 441 V 441
>gi|225562047|gb|EEH10327.1| adenylate-forming enzyme AfeA [Ajellomyces capsulatus G186AR]
Length = 557
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKA-NVNGKMCIREGPM 99
+T + T+F P+N SVG+PV EM + D+ G + A V G++C+R GP
Sbjct: 340 MTETTCIATMF-RYPEN--DDTGSVGRPVASLEMKLIDDEGKNISAYGVRGEICVR-GPT 395
Query: 100 VQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFK 157
V + NP AN +F WF +GD+GY D + W I +D KE K V F+
Sbjct: 396 VIKGYFENPTANAQSFDGEWFKTGDIGYCDEK--TKKWYI----IDRKKELIK--VRGFQ 447
Query: 158 V 158
V
Sbjct: 448 V 448
>gi|148255750|ref|YP_001240335.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi1]
gi|146407923|gb|ABQ36429.1| Fatty acid CoA ligase [Bradyrhizobium sp. BTAi1]
Length = 533
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
+++I D+ G + K + G++C+ GP V +NPEAN AF+ GWF +GDLG+ D+Q
Sbjct: 354 QVSIQDDQGRELKPSETGEICVI-GPAVFAGYYDNPEANAKAFRDGWFRTGDLGHMDAQ 411
>gi|423695741|ref|ZP_17670231.1| long-chain-fatty-acid--CoA ligase FadD [Pseudomonas fluorescens
Q8r1-96]
gi|388008670|gb|EIK69921.1| long-chain-fatty-acid--CoA ligase FadD [Pseudomonas fluorescens
Q8r1-96]
Length = 562
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 79/207 (38%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPVRRE-MAIPDENGVDQKANVNGKMCI 94
GC +T + V P G + +VG PV M + +++GV+Q G++CI
Sbjct: 358 GCGITEGYGLTETSPVASANPYGGKSRLGTVGMPVPGTLMKVINDDGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + N PEA GWF SGD+ D + + + + P
Sbjct: 418 K-GPQIMKGYWNKPEATAEVLDHEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N +KVP
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARETGVSLEELKAYCKENFTGYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|261197698|ref|XP_002625251.1| AMP-binding enzyme [Ajellomyces dermatitidis SLH14081]
gi|239595214|gb|EEQ77795.1| AMP-binding enzyme [Ajellomyces dermatitidis SLH14081]
Length = 550
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKA-NVNGKMCIREGPM 99
+T V T F P+N SVG+PV EM + D++G + A V G++C+R GP
Sbjct: 333 MTETTCVATRFAY-PEN--DDTGSVGRPVASLEMRLIDDDGKNISAYGVRGEICVR-GPT 388
Query: 100 VQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFK 157
+ + NP AN +F WF +GD+GY D + W I VD KE K V F+
Sbjct: 389 IIKGYFENPGANAESFDGDWFKTGDIGYCDEK--TKKWYI----VDRKKELIK--VRGFQ 440
Query: 158 V 158
V
Sbjct: 441 V 441
>gi|146340946|ref|YP_001205994.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS 278]
gi|146193752|emb|CAL77769.1| Fatty acid CoA ligase [Bradyrhizobium sp. ORS 278]
Length = 531
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V ++GP + S G + +++I D+ G + K G++C+ GP
Sbjct: 319 VTGNITVLPAPAHEEEDGPEARIGSCGYERTGMQVSIQDDQGRELKPGETGEICVI-GPA 377
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V +NPEAN AF+ GWF +GDLG+ D+Q L
Sbjct: 378 VFAGYYDNPEANAKAFRDGWFRTGDLGHMDAQGFL 412
>gi|408527460|emb|CCK25634.1| Long-chain-fatty-acid--CoA ligase [Streptomyces davawensis JCM
4913]
Length = 495
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 61/205 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGP---HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMC 93
FGC V + ++ N P KA S+G P++ E+ + D+ G D G++
Sbjct: 289 FGCVVLEGFGMSETSPVVTFNHPDRPRKAGSIGTPIKDVEVRLLDDKGQDVAPGEIGELA 348
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISP 139
+R GP V + N PE GW SGDL D L + + + P
Sbjct: 349 VR-GPNVMKGYWNRPEETAATIPDGWLRSGDLARQDEDGYLYIVDRKKDMIIRGGYNVYP 407
Query: 140 TEV-----------------------------------------DAVKEFCKRNVASFKV 158
E+ D +++F K VA++K
Sbjct: 408 REIEEVLHEHPAVALAAVVGVADAHLGEEIAAAVVLRPKAQATPDELRQFVKDRVAAYKY 467
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVA 183
P++V++ D+L P +GKI +R ++
Sbjct: 468 PREVWLVDALPTGP-SGKILKREIS 491
>gi|152992469|ref|YP_001358190.1| long-chain fatty-acid-CoA ligase [Sulfurovum sp. NBC37-1]
gi|151424330|dbj|BAF71833.1| long-chain fatty-acid-CoA ligase [Sulfurovum sp. NBC37-1]
Length = 511
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 59/182 (32%)
Query: 56 PKNGPHKASSVGKPVRREMA-IPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTA 112
PK G K ++GKP+ A + D++G D G++ ++ G ++ N PE NK A
Sbjct: 318 PKEGKIKPGTIGKPIWGTQARLIDKDGRDVPRGKTGEIFLK-GKLITIGYWNKPEENKKA 376
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
F+ GWF +GDL Y D + + I P EV
Sbjct: 377 FENGWFHTGDLAYEDEEGYYHFVGRIKELIIRGGSNIMPGEVEDVLEDHPKVESCGIVGF 436
Query: 143 ------------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
D +++F + ++ +KVP+K DSL P+ GKI
Sbjct: 437 PDKHYGSIVGAFVVPRQGVPAPTADELRDFVSQRLSHYKVPQKWIFVDSLPKNPV-GKID 495
Query: 179 RR 180
R+
Sbjct: 496 RK 497
>gi|83647571|ref|YP_436006.1| acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Hahella
chejuensis KCTC 2396]
gi|83635614|gb|ABC31581.1| Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Hahella
chejuensis KCTC 2396]
Length = 514
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 62/208 (29%)
Query: 34 PRLE-FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGK 91
P LE +G TS ++ V + P K SVG P+ ++ + DE G + G+
Sbjct: 313 PILEGYGLSETSPVASFNVL-----DRPRKPGSVGVPIWGVDIKVVDEKGGEVAHRERGE 367
Query: 92 MCIR-EGPMVQRINNPEANKTAFQFGWFLSGDLGYFDS-------QRCLNM-----WKIS 138
+ IR M +N PEA A + GWF SGD+GY D R +M + +
Sbjct: 368 IVIRGHNIMKGYLNRPEATADAIRNGWFHSGDIGYMDEDGYLFIVDRLKDMIIRGGYNVY 427
Query: 139 PTEV-----------------------------------------DAVKEFCKRNVASFK 157
P E+ + ++E+CK +A++K
Sbjct: 428 PRELEETLLTHPAVSLAAVVGVPDSQYGEEIKAFVILKEGARADAEEIREWCKSKMAAYK 487
Query: 158 VPKKVFIADSLSGKPLTGKIQRRIVAEL 185
P+ + I DSL TGKI +R + L
Sbjct: 488 YPRLLEICDSLP-MTATGKILKRELKSL 514
>gi|241895784|ref|ZP_04783080.1| possible o-succinylbenzoate--CoA ligase [Weissella
paramesenteroides ATCC 33313]
gi|241870827|gb|EER74578.1| possible o-succinylbenzoate--CoA ligase [Weissella
paramesenteroides ATCC 33313]
Length = 507
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 23 FLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGV 82
F+ ++ R + +G TS+ S L P N K S GKPV ++AI +
Sbjct: 294 FIAFQDRFHTKILEGYGMTETSSQST-----LNPINA-QKIGSAGKPVGTDVAILIDGKY 347
Query: 83 DQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
+ + G++ +R ++ +P+ N AF WFL+GDLGYFD L
Sbjct: 348 ETRGTAIGEIVVRGDHVISDYVDPQPN--AFHDDWFLTGDLGYFDEDGYL 395
>gi|317026164|ref|XP_001389107.2| peroxisomal-coenzyme A synthetase [Aspergillus niger CBS 513.88]
Length = 538
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 59/168 (35%)
Query: 77 PDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM 134
PD + + + G++C+R + M ++NP+AN+ AF F G+F +GDLG L +
Sbjct: 364 PDAGRLTNEPGIVGEICVRGKSIMTGYLDNPKANEQAFLFGGFFRTGDLGVVKEHGYLQL 423
Query: 135 W------------KISPTEVD--------------------------------------- 143
KISP+E++
Sbjct: 424 TGRIKEIINKGGEKISPSEIEHVASSFEGVRESVCFRIPDEIYGEEVGVAAVIEVGKQVT 483
Query: 144 --AVKEFCKRNVASFKVPKKVFIADSL----SGKPLTGKIQRRIVAEL 185
A+K+ +++VA FKVPK VF D++ +GKPL + + V L
Sbjct: 484 EAALKKHFRQHVAMFKVPKAVFFVDTIPTNRTGKPLRSLLSEQYVQGL 531
>gi|301059669|ref|ZP_07200577.1| AMP-binding enzyme [delta proteobacterium NaphS2]
gi|300446235|gb|EFK10092.1| AMP-binding enzyme [delta proteobacterium NaphS2]
Length = 526
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 61 HKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFG-W 117
H SVG V E+ I DE+G G++CIR M +NNPEAN+ AF G W
Sbjct: 342 HVIGSVGTAVPGVEVQIRDESGKQMDVGERGEICIRARNIMKGYLNNPEANEAAFWDGEW 401
Query: 118 FLSGDLGYFDSQRCL 132
F SGD+G FD L
Sbjct: 402 FRSGDVGVFDDNGYL 416
>gi|114327454|ref|YP_744611.1| acyl-CoA synthetase [Granulibacter bethesdensis CGDNIH1]
gi|114315628|gb|ABI61688.1| acyl-CoA synthetase family protein [Granulibacter bethesdensis
CGDNIH1]
Length = 511
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 59/180 (32%)
Query: 61 HKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFL 119
H A SVG E+ I D++G N G++ IR + NNP+AN F GWF
Sbjct: 329 HYAGSVGIAAGPEVGIMDDDGTILGPNQLGEVVIRGRNVTAGYENNPDANLKGFHNGWFR 388
Query: 120 SGDLGYFDSQRCLNMW--------------KISPTEVDAV-------------------- 145
+GD G D L W K SP EVD V
Sbjct: 389 TGDQGKIDEAGYL--WLTGRIKEIINRGGEKFSPLEVDNVVMEHPAVQQCLTFAIPHDKL 446
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+++ + +A+FKVP+K+ + K TGK+QR +AE
Sbjct: 447 GEEAGLAIVLHEGQTADEHQIRDYLSQRLAAFKVPRKIVFLTEIP-KGATGKLQRIGLAE 505
>gi|345022165|ref|ZP_08785778.1| O-succinylbenzoic acid--CoA ligase [Ornithinibacillus scapharcae
TW25]
Length = 484
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 65/192 (33%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQ-KANVNG 90
+P FG TS+ + L P++ HK S GK + P + + Q + N G
Sbjct: 284 VPVFQSFGMTETSS----QIVTLSPRDALHKVGSAGKAL-----FPAQVKIQQSEPNQIG 334
Query: 91 KMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WK 136
++ ++ GPMV + N+ +AN+ +F GW L+GDLGY D + L +
Sbjct: 335 EILVK-GPMVTKGYYNHTKANENSFHDGWLLTGDLGYVDDEGFLYVVDRRKDLIISGGEN 393
Query: 137 ISPTEVDA-------VKE---------------------------------FCKRNVASF 156
I P+E+++ VKE + K +A +
Sbjct: 394 IYPSEIESVLSGFEGVKEIGVTGKKDDYWGQVPVAFIVPHHKQVKKEDILTYAKDKLAKY 453
Query: 157 KVPKKVFIADSL 168
K+PK+++ DSL
Sbjct: 454 KLPKEIYFVDSL 465
>gi|295394631|ref|ZP_06804850.1| acyl-CoA synthetase [Brevibacterium mcbrellneri ATCC 49030]
gi|294972524|gb|EFG48380.1| acyl-CoA synthetase [Brevibacterium mcbrellneri ATCC 49030]
Length = 540
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 56 PKNGPHKASSVGKPV---RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANK 110
P P K S G PV R E+ PD G + G++ R GP V NN +AN
Sbjct: 348 PSQNPEKRGSWGMPVPSVRMEIMGPD--GTLLEPGQEGEIVYR-GPHVTPGYWNNAQANA 404
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIA 165
+AF +GWF SGD+GY D + W D K+ K NV+S KV + + A
Sbjct: 405 SAFAYGWFHSGDIGYKDDDGTV--WF-----TDRAKDIIKTGGENVSSLKVEQILLDA 455
>gi|330807952|ref|YP_004352414.1| long-chain-fatty-acid--CoA ligase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327376060|gb|AEA67410.1| long-chain-fatty-acid--CoA ligase (acyl-CoA synthetase)
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 562
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 79/207 (38%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPVRRE-MAIPDENGVDQKANVNGKMCI 94
GC +T + V P G + +VG PV M + +++GV+Q G++CI
Sbjct: 358 GCGITEGYGLTETSPVASANPYGGKSRLGTVGMPVPGTLMKVINDDGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + N PEA GWF SGD+ D + + + + P
Sbjct: 418 K-GPQIMKGYWNKPEATAEVLDHEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N +KVP
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARETGVSLEELKAYCKENFTGYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|124267417|ref|YP_001021421.1| coenzyme A synthetase-like protein [Methylibium petroleiphilum PM1]
gi|124260192|gb|ABM95186.1| coenzyme A synthetase-like protein [Methylibium petroleiphilum PM1]
Length = 535
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 57/178 (32%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K +VG P E+ I E+G G++ IR GP V NNP+AN F GWF
Sbjct: 355 KPGAVGLPAGPEVEIMGEDGSLLAVGQIGEIVIR-GPNVTAGYENNPKANAEGFLNGWFR 413
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEVD------------------------ 143
+GD G D+ +++ K+SP EVD
Sbjct: 414 TGDQGSKDADGYISLTGRLKEIINRGGEKVSPREVDEILMDHPAVGQCVCFGMPHPKLGE 473
Query: 144 -----------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+++F + A +KVPKK+ D + K TGK+QR +A+
Sbjct: 474 EVAAVVVLKEGASATEREIQDFVAKRAADYKVPKKILFMDEIP-KGATGKLQRIGLAQ 530
>gi|159900315|ref|YP_001546562.1| AMP-dependent synthetase/ligase [Herpetosiphon aurantiacus DSM 785]
gi|159893354|gb|ABX06434.1| AMP-dependent synthetase and ligase [Herpetosiphon aurantiacus DSM
785]
Length = 499
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 77/192 (40%), Gaps = 61/192 (31%)
Query: 52 FVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEA 108
F L P++ KA SVGKP+ + I DE G D N G++ I GP V NP A
Sbjct: 309 FTLNPEDAIRKAGSVGKPIFHLDARIVDEAGRDVPTNSIGEL-ILYGPTVCNGYWRNPVA 367
Query: 109 NKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVD-------AVKE-- 147
A Q GWF +GDL D++ R +M+ + P EV+ AV+E
Sbjct: 368 TAQALQKGWFYTGDLARVDAEGYFYIVDRKKDMYISGGENVYPAEVENVLYQHPAVQECA 427
Query: 148 --------------------------------FCKRNVASFKVPKKVFIADSLSGKPLTG 175
FC+ +AS+K PK ++ L +G
Sbjct: 428 VIGIPDSRWGEVGRALVVLRPSTQLDEPTLIAFCRERLASYKTPKSIYFLPELPHNA-SG 486
Query: 176 KIQRRIVAELRK 187
K+ + ELRK
Sbjct: 487 KV---VKPELRK 495
>gi|456355170|dbj|BAM89615.1| acyl-CoA synthetase [Agromonas oligotrophica S58]
Length = 533
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREM--AIPDENGVDQKANVNGKMCIREGPM 99
VT I+V ++GP R M +I D+ G + K G++C+ GP
Sbjct: 321 VTGNITVLPAAAHEEEDGPQARIGTCGYERTGMQVSIQDDGGRELKPGETGEICVI-GPA 379
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
V +NPEAN AF+ GWF +GDLG+ D+Q
Sbjct: 380 VFAGYYDNPEANAKAFRDGWFRTGDLGHMDAQ 411
>gi|346976651|gb|EGY20103.1| 4-coumarate-CoA ligase [Verticillium dahliae VdLs.17]
Length = 329
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 16/116 (13%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMV--Q 101
+S TV +L G K +SVGKP E+ I DEN D +A V+G+ C+ GP V +
Sbjct: 117 GMSEATVTLLRNTRGGQKGASVGKPAAGMEVRIVDENYNDVQAGVDGE-CLIRGPSVFME 175
Query: 102 RINNPEANKTAFQFGWFLSGDL------GYF---DSQRCLNMWK---ISPTEVDAV 145
NN AF+ GW +GD+ GYF ++ L +K I+P E++A+
Sbjct: 176 YKNNVAETAAAFRGGWMCTGDIVHVDQDGYFWLTGRKKELIKYKGHQIAPAELEAI 231
>gi|421748674|ref|ZP_16186238.1| acyl-CoA synthetase [Cupriavidus necator HPC(L)]
gi|409772567|gb|EKN54549.1| acyl-CoA synthetase [Cupriavidus necator HPC(L)]
Length = 538
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 59/190 (31%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANK 110
VL P + KA S GKP + E I D+ D G++ R ++ N+PE
Sbjct: 347 VLHPDDQLRKAGSAGKPALNVETRIVDDEMRDVAPGEIGEIVHRSPQLLDGYYNDPERTA 406
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------------------------------ 134
AF+ GWF SGDL D + + +
Sbjct: 407 EAFRGGWFHSGDLAVRDDEGYITIVDRKKDMIKSGGENVASREVEEMIFRIPEVSEVAVI 466
Query: 135 ------WKISPTEVDAVKE-----------FCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
W + T V +KE FCK +A FKVPK+V A++L P +GK+
Sbjct: 467 GLPDPYWVEAVTAVIVLKEGQSLSEQQVVDFCKAGMAHFKVPKRVIFAEALPKNP-SGKL 525
Query: 178 QRRIVAELRK 187
+R ELR+
Sbjct: 526 LKR---ELRR 532
>gi|434392108|ref|YP_007127055.1| Long-chain-fatty-acid--CoA ligase [Gloeocapsa sp. PCC 7428]
gi|428263949|gb|AFZ29895.1| Long-chain-fatty-acid--CoA ligase [Gloeocapsa sp. PCC 7428]
Length = 545
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 58/178 (32%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGW 117
+K S+G P+ EM I +G D G++ IR GP M+ N P + GW
Sbjct: 318 YKVGSIGTPIENVEMKIVHADGKDALPGEPGEIAIR-GPNVMLGYWNRPFETAEVIKNGW 376
Query: 118 FLSGDLGYFD----------SQRCLNM--WKISPTEVD-------AVKE----------- 147
F +GD+G D S+ +N+ +K+ PTEV+ AV E
Sbjct: 377 FYTGDIGQIDEDGYFYIVDRSKDMINVAGFKVYPTEVENVIYQHPAVAEVAVYGVPNLET 436
Query: 148 -----------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
FC +A++KVPK + DS+ P TGK+ +R++
Sbjct: 437 TEIVKANIVLKPDQTVSEKQMIAFCSERMAAYKVPKAIKFVDSIPKNP-TGKVLKRVL 493
>gi|406957558|gb|EKD85467.1| AMP-dependent synthetase and ligase [uncultured bacterium]
Length = 777
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 55 LPKNGPHKA---SSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEA 108
LPK+ K +SVG ++ + I E+G + NG++C+R GP++ ++NP
Sbjct: 341 LPKDEYRKIIDLNSVGTELKWTNVTILKEDGTECAEEENGEICVR-GPVITPGYLDNPNE 399
Query: 109 NKTAFQFGWFLSGDLGYF 126
NK AF + WF SGD GYF
Sbjct: 400 NKKAFAYNWFHSGDRGYF 417
>gi|383819414|ref|ZP_09974687.1| acyl-CoA synthetase [Mycobacterium phlei RIVM601174]
gi|383337050|gb|EID15438.1| acyl-CoA synthetase [Mycobacterium phlei RIVM601174]
Length = 527
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 56/187 (29%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
VL P A + G+P V E AI D+ G++ R M+ +++
Sbjct: 332 VLGPDEQDAHAGAAGRPAVNVETAILDDENNPVPPGTVGEIAHRSPHLMLGYLDDEAKTA 391
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------AVKE---- 147
AF+ GWF SGDLGY+D L++ ++ EV+ AV+E
Sbjct: 392 EAFRGGWFHSGDLGYYDEHGLLHVVDRKKDMIKTGGENVASREVEEVIYRHPAVEEVAVF 451
Query: 148 ------------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
C+ ++A FK PK+VF DSL P +GK+
Sbjct: 452 GLPHPTWVESVVAAVVTRDGATLGEDDLLGHCREHLAGFKTPKQVFFVDSLPKNP-SGKL 510
Query: 178 QRRIVAE 184
+R++ E
Sbjct: 511 LKRVLRE 517
>gi|297170637|gb|ADI21662.1| acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [uncultured
Rhizobium sp. HF0130_09F11]
Length = 484
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRC 131
++I DE G + N G++C+ GP V +NP+AN AF+ GWF +GDLG+ D+
Sbjct: 307 ISIQDEAGTELGPNETGEICV-TGPAVFAGYYDNPDANAKAFRDGWFRTGDLGHLDAAGY 365
Query: 132 LNM 134
L++
Sbjct: 366 LSI 368
>gi|297171572|gb|ADI22569.1| acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [uncultured
Rhizobium sp. HF0500_10F10]
Length = 543
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRC 131
++I DE G + N G++C+ GP V +NP+AN AF+ GWF +GDLG+ D+
Sbjct: 366 ISIQDEAGTELGPNETGEICV-TGPAVFAGYYDNPDANAKAFRDGWFRTGDLGHLDAAGY 424
Query: 132 LNM 134
L++
Sbjct: 425 LSI 427
>gi|378949235|ref|YP_005206723.1| long-chain-fatty-acid--CoA ligase [Pseudomonas fluorescens F113]
gi|359759249|gb|AEV61328.1| Long-chain-fatty-acid--CoA ligase [Pseudomonas fluorescens F113]
Length = 562
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPVRRE-MAIPDENGVDQKANVNGKMCI 94
GC +T + V P G + +VG PV M + +++GV+Q G++CI
Sbjct: 358 GCGITEGYGLTETSPVASANPYGGKSRLGTVGMPVPGTLMKVINDDGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + N PEA GWF SGD+ D + + + + P
Sbjct: 418 K-GPQIMKGYWNKPEATAEVLDHEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N +K+P
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARETGVSLEELKAYCKENFTGYKIP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|453073192|ref|ZP_21976145.1| fatty-acid--CoA ligase [Rhodococcus qingshengii BKS 20-40]
gi|452756503|gb|EME14917.1| fatty-acid--CoA ligase [Rhodococcus qingshengii BKS 20-40]
Length = 549
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 92/239 (38%), Gaps = 76/239 (31%)
Query: 19 YTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKAS-------------- 64
+T++ L Y G + P + ++ ++ L P A
Sbjct: 313 FTSMRLLYSGGAPISPTAAEAVRAMTGAALHNIYGLTETTSPTHAVPVGADTPVDPTSGA 372
Query: 65 -SVGKPVRREMA-IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLS 120
SVG PV + I DE G G++ +R GP V R N PE + +A + GWF +
Sbjct: 373 LSVGVPVPNTVVRIEDEGGAVLPIGEIGELVVR-GPQVVRGYWNKPEESASAIRDGWFHT 431
Query: 121 GDLGYFDS-------QRCLNM-----WKISPTEVD-------AVKE-------------- 147
GD+G+ D R +M +K+ P EV+ AV+E
Sbjct: 432 GDVGFMDEAGWFYVVDRKKDMIIASGYKVWPREVEDVLAEHPAVREAAVVGIADEYRGET 491
Query: 148 --------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
CK+ +A++K P+ V + + L K +TGKI RR ELR
Sbjct: 492 VKAFVSLVAGASVTPEDLIDHCKQRMAAYKYPRSVVLVEELP-KTVTGKILRR---ELR 546
>gi|420985764|ref|ZP_15448929.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus 4S-0206]
gi|392190616|gb|EIV16247.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus 4S-0206]
Length = 500
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 56/176 (31%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFL 119
+ ++G PVR E+ I D+NG D V G++ IR E M N PEA A GWF
Sbjct: 316 RPGTIGIPVRGCELRIVDDNGEDTPDGVPGEVAIRGENLMKGYWNRPEATAEAIPDGWFR 375
Query: 120 SGDL------GYF---DSQRCLNM---WKISPTEVDAV---------------------- 145
+GD+ GY+ D ++ L + + + P EV+ V
Sbjct: 376 TGDIATRDSDGYYTIVDRKKDLIIRGGYNVYPREVEEVLYEHPAVAEAAVIGIKHADLGE 435
Query: 146 -------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ F + +A++K P++++ DSL K TGKI RR V
Sbjct: 436 EIGAAVALRPGMQVEAEELRAFVRDRLAAYKYPRELWFVDSLP-KGATGKILRRKV 490
>gi|420866507|ref|ZP_15329896.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus 4S-0303]
gi|420871298|ref|ZP_15334680.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus
4S-0726-RA]
gi|420875748|ref|ZP_15339124.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus
4S-0726-RB]
gi|420990221|ref|ZP_15453377.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus 4S-0206]
gi|421046097|ref|ZP_15509097.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus
4S-0116-S]
gi|392065223|gb|EIT91072.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus 4S-0303]
gi|392067223|gb|EIT93071.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus
4S-0726-RB]
gi|392070768|gb|EIT96615.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus
4S-0726-RA]
gi|392184500|gb|EIV10151.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus 4S-0206]
gi|392235550|gb|EIV61048.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus
4S-0116-S]
Length = 500
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 56/176 (31%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFL 119
+ ++G PVR E+ I D+NG D V G++ IR E M N PEA A GWF
Sbjct: 316 RPGTIGIPVRGCELRIVDDNGEDTPDGVPGEVAIRGENLMKGYWNRPEATAEAIPDGWFR 375
Query: 120 SGDL------GYF---DSQRCLNM---WKISPTEVDAV---------------------- 145
+GD+ GY+ D ++ L + + + P EV+ V
Sbjct: 376 TGDIATRDSDGYYTIVDRKKDLIIRGGYNVYPREVEEVLYEHPAVAEAAVIGIKHADLGE 435
Query: 146 -------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ F + +A++K P++++ DSL K TGKI RR V
Sbjct: 436 EIGAAVALRPGMQVEAEELRAFVRDRLAAYKYPRELWFVDSLP-KGATGKILRRKV 490
>gi|377568564|ref|ZP_09797749.1| putative fatty-acid--CoA ligase [Gordonia terrae NBRC 100016]
gi|377534249|dbj|GAB42914.1| putative fatty-acid--CoA ligase [Gordonia terrae NBRC 100016]
Length = 507
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P+ + SS G+PV E + D +G D + V G++ R
Sbjct: 307 YNCFGQSEIGPLAT-VLRPEEHEDRPSSCGRPVFFVETRVVDTDGNDVEPGVPGEILYR- 364
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN-- 152
P + R +NP A + AF+ GWF SGDL D++ + T VD +K+
Sbjct: 365 SPQLCRGYWDNPAATEEAFRDGWFHSGDLVTRDAEGFI-------TVVDRIKDVINTGGI 417
Query: 153 -VASFKVPKKVFIADSLSGKPLTGK 176
VAS +V V+ +++S + G+
Sbjct: 418 LVASREVEDTVYTHEAVSEVAVIGE 442
>gi|226182689|dbj|BAH30793.1| fatty-acid--CoA ligase [Rhodococcus erythropolis PR4]
Length = 549
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 92/239 (38%), Gaps = 76/239 (31%)
Query: 19 YTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKAS-------------- 64
+T++ L Y G + P + ++ ++ L P A
Sbjct: 313 FTSMRLLYSGGAPISPTAAEAVRAMTGAALHNIYGLTETTSPTHAVPVGADTPVDPTSGA 372
Query: 65 -SVGKPVRREMA-IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLS 120
SVG PV + I DE G G++ +R GP V R N PE + +A + GWF +
Sbjct: 373 LSVGVPVPNTVVRIEDEGGAVLPIGEIGELVVR-GPQVVRGYWNKPEESASAIRDGWFHT 431
Query: 121 GDLGYFDS-------QRCLNM-----WKISPTEVD-------AVKE-------------- 147
GD+G+ D R +M +K+ P EV+ AV+E
Sbjct: 432 GDVGFMDEAGWFYVVDRKKDMIIASGYKVWPREVEDVLAEHPAVREAAVVGIADEYRGET 491
Query: 148 --------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
CK+ +A++K P+ V + + L K +TGKI RR ELR
Sbjct: 492 VKAFVSLVAGASVTPEDLIDHCKQRMAAYKYPRSVVLVEELP-KTVTGKILRR---ELR 546
>gi|163858688|ref|YP_001632986.1| acyl-CoA synthetase [Bordetella petrii DSM 12804]
gi|163262416|emb|CAP44719.1| putative ligase [Bordetella petrii]
Length = 540
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
E++I D G + G++C+ GP V NNPEAN+ AF+ GWF +GD+GY D Q
Sbjct: 365 EVSIQDAEGNPLPSGQTGEICVC-GPAVFAGYYNNPEANRKAFRNGWFRTGDVGYLDEQG 423
Query: 131 CL 132
L
Sbjct: 424 YL 425
>gi|377572740|ref|ZP_09801820.1| putative fatty-acid--CoA ligase [Mobilicoccus pelagius NBRC 104925]
gi|377538398|dbj|GAB46985.1| putative fatty-acid--CoA ligase [Mobilicoccus pelagius NBRC 104925]
Length = 503
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 60/205 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I+ VL P+ + SS G+PV E+ + D G D G++ R
Sbjct: 303 YNCFGQSEIAPLAT-VLRPEEHAARPSSTGRPVLFVELRVVDIQGRDVAPGERGEVVYRS 361
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEV- 142
+ PE AF+ GWF SGDL D + L + ++P EV
Sbjct: 362 PQLCDGYWGRPEETDAAFRDGWFHSGDLAVQDEEGYLTIVDRVRDVINTGGVLVAPREVE 421
Query: 143 ----------------------------------------DAVKEFCKRNVASFKVPKKV 162
D ++E + N+A+FK+PK++
Sbjct: 422 DVLYAHPAVAEVAVVGIPDDKWGEAVYAFVVPRPGSDVDEDTLREHARANLATFKIPKQI 481
Query: 163 FIADSLSGKPLTGKIQRRIVAELRK 187
+ D+L + +GKI +R ELR+
Sbjct: 482 RLLDALP-RNASGKILKR---ELRE 502
>gi|350267260|ref|YP_004878567.1| 2-succinylbenzoate--CoA ligase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349600147|gb|AEP87935.1| 2-succinylbenzoate--CoA ligase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 486
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G + +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQACEPFEHGEILVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+++FQ GW +GDLGY DS+ L + I P EV++V
Sbjct: 350 RESANESSFQNGWLKTGDLGYLDSEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
+CK +A +K+P K F+ DSL +
Sbjct: 410 AEAGVSGAEDKKWGKVPHAYLVLHKPVSAEELTAYCKERLAKYKIPAKFFVLDSLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLMRNQLKDARK 482
>gi|225560486|gb|EEH08767.1| peroxisomal-coenzyme A synthetase [Ajellomyces capsulatus G186AR]
Length = 513
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 75/181 (41%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + +VG E+ I DE+G + G++CIR E +NNP AN+++F + G
Sbjct: 322 GKRQPGTVGIGQGVEVKILDEDGNEVPQGSEGEICIRGENVTKGYLNNPAANESSFTKSG 381
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVD--------------------- 143
+F +GD G D + +N KISP E+D
Sbjct: 382 FFRTGDRGKKDKDGYIFITGRIKELINKGGEKISPIELDNTIAYHPNVAEAVSFAIPDPH 441
Query: 144 --------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
+K + VA FK+PKK++I + K TGKIQRR VA
Sbjct: 442 YGEDIGVAVVLKKGGNLSEDMLKSWIAPKVAKFKIPKKIWILSEIP-KTATGKIQRRKVA 500
Query: 184 E 184
E
Sbjct: 501 E 501
>gi|379736226|ref|YP_005329732.1| putative O-succinylbenzoate--CoA ligase (menE) [Blastococcus
saxobsidens DD2]
gi|378784033|emb|CCG03701.1| putative O-succinylbenzoate--CoA ligase (menE) [Blastococcus
saxobsidens DD2]
Length = 502
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 22/142 (15%)
Query: 35 RLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMC 93
R +GC TS++ + G + SVGKPV E+ + DE G +G++
Sbjct: 301 REGYGCTETSSL------ISAQPAGARRLGSVGKPVAGAEVEVVDEAGRPVPPGAHGEIR 354
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKR 151
+R GP++ + +PEA A + GWF +GD+G FD L + VD +K+ R
Sbjct: 355 VR-GPVLMQGYWRSPEATAEAVRDGWFHTGDVGTFDEDGYLYV-------VDRIKDVIIR 406
Query: 152 NVASFKV-PKKVFIADSLSGKP 172
N F V P+ V D+L P
Sbjct: 407 N--GFNVYPRDV--EDALVAHP 424
>gi|320589091|gb|EFX01559.1| peroxisomal-coenzyme A synthetase [Grosmannia clavigera kw1407]
Length = 524
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 72/183 (39%), Gaps = 61/183 (33%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF-GWFL 119
K +VG EM I D+ G + + G++C+R E +NNP AN TA+ G+F
Sbjct: 332 KPGAVGIGQGVEMRILDDAGTELPSGAEGEICVRGENVTKGYLNNPAANATAYTADGFFR 391
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEVDAV---------------------- 145
+GD G D + + KISP E+D +
Sbjct: 392 TGDQGRKDPDGYIVITGRIKELINKGGEKISPIELDNILARHPAIAEAVCFAIPDDLYGQ 451
Query: 146 -------------------KEFCKRNVASFKVPKK-----VFIADSLSGKPLTGKIQRRI 181
+ + VA FKVPKK ++ D + K TGKIQRRI
Sbjct: 452 DIGVAVVRKAGEPLTADELRAWVADKVAKFKVPKKKLTSQIYFTDVMP-KTATGKIQRRI 510
Query: 182 VAE 184
VAE
Sbjct: 511 VAE 513
>gi|44889628|gb|AAS48417.1| 4-coumaroyl-coenzyme A ligase [Allium cepa]
Length = 541
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
IS+C F P K+ S G VR E+ + D E G N+ G++CIR GP + +
Sbjct: 343 ISMCPGFAKHPTQA--KSGSCGTIVRNAELKVMDPETGFSLGRNLPGEICIR-GPQIMKG 399
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA + GW +GD+GY D + + VD VKE K F+VP
Sbjct: 400 YLNDPEATSSTIDLEGWLHTGDIGYVDDDDEVFI-------VDRVKELIK--FKGFQVP 449
>gi|400537171|ref|ZP_10800704.1| acyl-CoA synthetase [Mycobacterium colombiense CECT 3035]
gi|400329200|gb|EJO86700.1| acyl-CoA synthetase [Mycobacterium colombiense CECT 3035]
Length = 532
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANKT 111
L P A S G+PV E I D+ A V G++ R + +++PE
Sbjct: 338 LGPGEQDAHAGSAGRPVVNVETVILDDEDNPVPAGVVGEIAHRSPHLTPGYLDDPERTAE 397
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGY+D L++ VD K+ K NVAS +V + ++
Sbjct: 398 AFRGGWFHSGDLGYYDEHGLLHV-------VDRKKDMIKTGGENVASREVEEVIY 445
Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 140 TEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
TE D + C+ ++A FK PK+VF A+ L P +GK+ +R++ E
Sbjct: 480 TEEDVIAH-CREHLAGFKTPKRVFFAEELPKNP-SGKLLKRLLRE 522
>gi|350638215|gb|EHA26571.1| hypothetical protein ASPNIDRAFT_196432 [Aspergillus niger ATCC
1015]
Length = 524
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 59/156 (37%)
Query: 77 PDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM 134
PD + + + G++C+R + M ++NP+AN+ AF F G+F +GDLG L +
Sbjct: 364 PDAGRLTNEPGIVGEICVRGKSIMTGYLDNPKANEQAFLFGGFFRTGDLGVIKEHGYLQL 423
Query: 135 W------------KISPTEVD--------------------------------------- 143
KISP+E++
Sbjct: 424 TGRIKEIINKGGEKISPSEIEHVASSFEGVRESVCFRIPDEIYGEEVGVAAVIEVGKQVT 483
Query: 144 --AVKEFCKRNVASFKVPKKVFIADSL----SGKPL 173
A+K+ +++VA FKVPK VF D++ +GKPL
Sbjct: 484 EAALKKHFRQHVAMFKVPKAVFFVDTIPTNRTGKPL 519
>gi|331699028|ref|YP_004335267.1| long-chain-fatty-acid--CoA ligase [Pseudonocardia dioxanivorans
CB1190]
gi|326953717|gb|AEA27414.1| Long-chain-fatty-acid--CoA ligase [Pseudonocardia dioxanivorans
CB1190]
Length = 536
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 38 FGCFVTSAISV---CTVFVLLPKNGPHKASSVGKPVRR--EMAIPDENGVDQKANVNGKM 92
+G VTS ++ C V VL P + P KA+S G+ VR ++ I D++G G++
Sbjct: 307 YGITVTSVFAMTENCAVTVLGPDDPPEKAASAGR-VRDHVDVQIADDDGNPLPPGEVGEI 365
Query: 93 CIR-EGP---MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
CIR GP M+ + PEA A + WFL+GD G D+ L
Sbjct: 366 CIRPNGPGMIMLGYHDMPEATLGAIRDLWFLTGDRGRLDADGYL 409
>gi|288553658|ref|YP_003425593.1| long-chain-fatty-acid--CoA ligase [Bacillus pseudofirmus OF4]
gi|288544818|gb|ADC48701.1| long-chain fatty-acid-CoA ligase [Bacillus pseudofirmus OF4]
Length = 567
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 64/204 (31%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMA--IPDENGVDQKANVNGKMCIR 95
+G TS +++ + G K S+G P A I E G G++ IR
Sbjct: 357 YGLTETSPVAISNLIW-----GERKTGSIGLPWPDTDAAIISAETGEKADFGEVGEIAIR 411
Query: 96 EGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNM-----WKISPTE 141
GP V + N PE F+ WFL+GD+GY D + R +M + I P E
Sbjct: 412 -GPQVMKGYWNRPEETAKVFKDDWFLTGDMGYMDEEGYFYIVDRKKDMIIAGGFNIYPRE 470
Query: 142 V-------DAVKE----------------------------------FCKRNVASFKVPK 160
+ DA++E +C++++A+FKVP+
Sbjct: 471 IEEVLYEHDAIQEAVIIGAPDEYRGETVKAFIVLKQGKSVTEEELDQYCRKHLAAFKVPR 530
Query: 161 KVFIADSLSGKPLTGKIQRRIVAE 184
+ L K L GKI RR++ E
Sbjct: 531 LYEFREELP-KTLVGKILRRVLVE 553
>gi|440701038|ref|ZP_20883253.1| AMP-binding enzyme [Streptomyces turgidiscabies Car8]
gi|440276317|gb|ELP64598.1| AMP-binding enzyme [Streptomyces turgidiscabies Car8]
Length = 497
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 61/202 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGP---HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMC 93
FGC V + ++ N P KA S+G PVR E+ + DE G + G++
Sbjct: 291 FGCMVLEGFGMSETSPVVSFNHPDRPRKAGSIGTPVRDVEVRLLDEAGREAAPGEIGELA 350
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDL------GYF---DSQRCLNM---WKISP 139
+R GP + + N PE GW +GDL GY D ++ L + + + P
Sbjct: 351 VR-GPNLMKGYWNRPEETAATIPDGWLRTGDLARQDEDGYLFIVDRKKDLIIRGGYNVYP 409
Query: 140 TEVDAV-----------------------------------------KEFCKRNVASFKV 158
E++ V +EF + VA++K
Sbjct: 410 REIEEVLHEHPAVALTAVLGLPDERLGEEVAAAVVLRPGAEATAEELQEFVRERVAAYKY 469
Query: 159 PKKVFIADSLSGKPLTGKIQRR 180
P++V++ D+L P +GKI +R
Sbjct: 470 PRRVWLTDALPMGP-SGKILKR 490
>gi|365888999|ref|ZP_09427726.1| Fatty acid CoA ligase [Bradyrhizobium sp. STM 3809]
gi|365335297|emb|CCE00257.1| Fatty acid CoA ligase [Bradyrhizobium sp. STM 3809]
Length = 531
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVG----KPVRREMAIPDENGVDQKANVNGKMCIREG 97
VT I+V ++GP A+ +G + +++I D+ G + +A G++C+ G
Sbjct: 319 VTGNITVLPAAAHEEEDGP--AARIGTCGYERTGMQVSIQDDQGRELRAGETGEICVI-G 375
Query: 98 PMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
P V +N EAN AF+ GWF +GDLG+ D+Q
Sbjct: 376 PAVFAGYYDNAEANAKAFRDGWFRTGDLGHMDAQ 409
>gi|333992899|ref|YP_004525513.1| fatty-acid--CoA ligase [Mycobacterium sp. JDM601]
gi|333488867|gb|AEF38259.1| fatty-acid-CoA ligase [Mycobacterium sp. JDM601]
Length = 527
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
L P + G+PV E AI DEN + + G++ R M+ +++
Sbjct: 332 ALGPDEQDAHPGAAGRPVINVETAILDENDAHVGSGIVGEIAHRSPHLMLGYLDDAAKTA 391
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGY+D+ L++ VD K+ K NVAS +V + ++
Sbjct: 392 EAFRGGWFHSGDLGYYDTHGLLHV-------VDRKKDMIKTGGENVASREVEEVLY 440
>gi|440582568|emb|CCG12971.1| putative CHAIN-FATTY-ACID-CoA LIGASE FADD13 (FATTY-ACYL-CoA
SYNTHETASE) [Mycobacterium tuberculosis 7199-99]
Length = 503
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N+PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNHPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|386399117|ref|ZP_10083895.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM1253]
gi|385739743|gb|EIG59939.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM1253]
Length = 534
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V VL ++ KA S GKPV E+ I +G D +G++ ++ GP + N PE
Sbjct: 332 VLVLDREDAARKAGSAGKPVLHTEVRIVRPDGSDADVGEHGELWVK-GPNITPGYWNRPE 390
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVD-------AVKE- 147
ANKT+F GW +GD D + ++ WK + P EV+ A+ E
Sbjct: 391 ANKTSFTDGWLHTGDATRVDEEGFYYIVDRWKDMYISGGENVYPAEVENVLHQLNAIAEA 450
Query: 148 ---------------------------------FCKRNVASFKVPKKVFIADSLSGKPLT 174
C N+A FK P++V D+L + T
Sbjct: 451 AVIGIPDVQWGEVGLAIVAAKPGQRLTEADVFAHCAANLARFKCPRQVRFVDALP-RNAT 509
Query: 175 GKIQR 179
GKI +
Sbjct: 510 GKIHK 514
>gi|261192663|ref|XP_002622738.1| coenzyme A synthetase [Ajellomyces dermatitidis SLH14081]
gi|239589220|gb|EEQ71863.1| coenzyme A synthetase [Ajellomyces dermatitidis SLH14081]
Length = 513
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 69/167 (41%), Gaps = 56/167 (33%)
Query: 73 EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGDLGYFDS-- 128
E+ I D++G + G++CIR E INNP AN+ +F + G+F +GD G D
Sbjct: 336 EVRILDQDGNEVPQGSEGEICIRGENVTKGYINNPAANEASFTKSGFFRTGDQGKMDKDG 395
Query: 129 --------QRCLNMW--KISPTEVD----------------------------------- 143
+ +N KISP E+D
Sbjct: 396 YVFITGRIKELINKGGEKISPIELDNTIAHNPNIAEAVSFAIPDTHYGEDIGVAVVLKKG 455
Query: 144 ------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+K + VA FK+PKK++I + K TGKIQRR VAE
Sbjct: 456 GSLSEDTLKSWIAPKVAKFKIPKKIWILPEIP-KTATGKIQRRKVAE 501
>gi|374991877|ref|YP_004967372.1| AMP-dependent synthetase and ligase [Streptomyces bingchenggensis
BCW-1]
gi|297162529|gb|ADI12241.1| AMP-dependent synthetase and ligase [Streptomyces bingchenggensis
BCW-1]
Length = 534
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 75/191 (39%), Gaps = 61/191 (31%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEAN 109
VL P + KA S G+P + E + DE G++ R GP V +PE
Sbjct: 335 VLGPADQERKAGSAGRPGLHVETRLVDERDRPVAPGTVGEIVHR-GPHVTPGYWRDPERT 393
Query: 110 KTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------AVKE--- 147
AF+ GWF SGDLG FD + L + +S EV+ AV E
Sbjct: 394 AEAFRGGWFHSGDLGVFDEEGYLTIVDRKKDMANSGGENVSGREVEEVIHAHPAVTEAAV 453
Query: 148 -------------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGK 176
C++ +A FKVPK V A+SL P +GK
Sbjct: 454 FGVPHPYWIEAVTAVVVTGPGGRPAAEELIAHCRKGLAGFKVPKYVVFAESLPKNP-SGK 512
Query: 177 IQRRIVAELRK 187
I +R ELR+
Sbjct: 513 ILKR---ELRE 520
>gi|113868228|ref|YP_726717.1| Acyl-CoA synthetase [Ralstonia eutropha H16]
gi|113527004|emb|CAJ93349.1| Acyl-CoA synthetase [Ralstonia eutropha H16]
Length = 514
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 78/213 (36%), Gaps = 68/213 (31%)
Query: 34 PRLEFGCFVTSAISVC----------TVFVLLPKNGPHKASSVGKPVRREMA-IPDENGV 82
PR ++ +++C TVFV K ++GKPV + I D G+
Sbjct: 296 PRPLLEAYLAKGVTICFGFGMTETGPTVFVCDEDTARRKIGTIGKPVGSMLTRIVDAAGL 355
Query: 83 DQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFLSGDLGYFDS-------QRCLN 133
D G++ I+ GP V N PEA A + GW SGD+ Y D R +
Sbjct: 356 DVGPGERGELLIK-GPGVTPGYWNLPEATAAAIRGGWLHSGDIAYRDEDGDYYIVDRAKD 414
Query: 134 MW-----KISPTEV-----------------------------------------DAVKE 147
M+ + P EV DAV
Sbjct: 415 MFISGGENVYPAEVENVLFQLPGVAEAAVIGTPDARWGEVGMALVVLRPGAVLETDAVIA 474
Query: 148 FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
CK +A +KVP+ V D+L P +GK+++
Sbjct: 475 HCKAQLAGYKVPRHVRFLDALPRTP-SGKVEKH 506
>gi|413923543|gb|AFW63475.1| putative AMP-dependent synthetase and ligase superfamily protein
[Zea mays]
Length = 575
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K S G VR E+ + D + G+ N+ G++CIR GP + +
Sbjct: 375 LSMCPAFAKEP--APAKPGSCGTVVRNAELKVVDPDTGLSLGRNLPGEICIR-GPQIMKG 431
Query: 103 -INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA +T GW +GD+GY D + + VD VKE K F+VP
Sbjct: 432 YLNDPEATARTIDVHGWLHTGDIGYVDDDDEVFI-------VDRVKELIKFK--GFQVP 481
>gi|383775045|ref|YP_005454114.1| acid-CoA ligase [Bradyrhizobium sp. S23321]
gi|381363172|dbj|BAL80002.1| acid-CoA ligase [Bradyrhizobium sp. S23321]
Length = 516
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 73/185 (39%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V VL ++ KA S GKPV E+ I +G D G++ +R GP + N PE
Sbjct: 314 VLVLDREDAARKAGSAGKPVLHTEVRIVRPDGSDADVGELGELWVR-GPNITPGYWNRPE 372
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVD------------ 143
ANKT+F GW +GD D + ++ WK + P EV+
Sbjct: 373 ANKTSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVENVLHQLNAIAEA 432
Query: 144 ------------------AVK-----------EFCKRNVASFKVPKKVFIADSLSGKPLT 174
AVK C N+A FK P++V D+L + T
Sbjct: 433 AVIGIPDAQWGEVGLAIVAVKPGQRLTEADVFAHCAANLARFKCPRQVRFVDALP-RNAT 491
Query: 175 GKIQR 179
GKI +
Sbjct: 492 GKIHK 496
>gi|350639601|gb|EHA27955.1| hypothetical protein ASPNIDRAFT_184942 [Aspergillus niger ATCC
1015]
Length = 549
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 49 CTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVD-QKANVNGKMCIREGPMVQ--RIN 104
C + + + + SVG+ V E + D+NG D V G++C+R GP V N
Sbjct: 337 CCIATMFRWDEGDETGSVGRLVPNMEAKLVDDNGTDISDYGVRGELCVR-GPAVTPGYFN 395
Query: 105 NPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKV 158
NP AN +F + GWF +GD+ Y D R W I VD KE K V F+V
Sbjct: 396 NPVANAESFDEQGWFHTGDIAYCD--RATQKWYI----VDRKKELIK--VRGFQV 442
>gi|229196171|ref|ZP_04322921.1| Feruloyl-CoA synthetase [Bacillus cereus m1293]
gi|423576312|ref|ZP_17552431.1| O-succinylbenzoate-CoA ligase [Bacillus cereus MSX-D12]
gi|228587329|gb|EEK45397.1| Feruloyl-CoA synthetase [Bacillus cereus m1293]
gi|401207308|gb|EJR14087.1| O-succinylbenzoate-CoA ligase [Bacillus cereus MSX-D12]
Length = 496
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 23 FLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENG 81
FLF +G FG TS TVF+L ++ K S+GKPV E + DEN
Sbjct: 289 FLFGQG---------FGMTETSP----TVFMLSEEDARRKVGSIGKPVLFCEYELIDENK 335
Query: 82 VDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWFLSGDLGYFDS 128
+ G++ IR GP M + N P+A K A Q GW +GDL D
Sbjct: 336 NKVEVGEVGELLIR-GPNVMKEYWNRPDATKEAIQDGWLYTGDLARVDE 383
>gi|164660893|ref|XP_001731569.1| hypothetical protein MGL_0837 [Malassezia globosa CBS 7966]
gi|159105470|gb|EDP44355.1| hypothetical protein MGL_0837 [Malassezia globosa CBS 7966]
Length = 539
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 80/210 (38%), Gaps = 70/210 (33%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ 101
+T A T L PK PHKA +VG E+ I +E G + NG++C+R +
Sbjct: 326 MTEAAHQMTSNPLPPK--PHKAGTVGFGHGVEVKILNEKGEELPVGQNGEVCVRGSNVTN 383
Query: 102 -RINNPEANKTAF-----------QFGWFLSGDLGYFDSQRCLNMW------------KI 137
I+N +AN+ F G+ +GD G D L + KI
Sbjct: 384 GYIDNEKANQDNFFRLAYNNCLPDVDGFLRTGDQGRMDDDGYLILTGRIKELINRSGEKI 443
Query: 138 SPTEVD-------------------------------------------AVKEFCKRNVA 154
SP EVD V+ N+
Sbjct: 444 SPLEVDNALLSLPYVKEAVSFGIPDDMYDELVGAVIVPEPGAAHPVDQAKVQSDLSANLV 503
Query: 155 SFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
FK+P +V+I DS+ K TGKIQRRIVA+
Sbjct: 504 KFKIPSRVWITDSIP-KTATGKIQRRIVAQ 532
>gi|387316225|gb|AFJ73467.1| 4-coumarate: coenzyme A ligase, partial [Cycas rumphii]
Length = 471
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 60 PHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR--INNPEAN-KTAFQ 114
P K+ + G VR EM + D E G+ N G++CIR GP + + +N+PEA T +
Sbjct: 323 PIKSGACGTVVRNAEMKLLDPETGISLPHNRAGEICIR-GPQIMKGYLNDPEATGSTIDK 381
Query: 115 FGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
GW +GD+GY D++ + + VD VKE K F+VP
Sbjct: 382 DGWLHTGDVGYIDNEEEIFI-------VDRVKELIKYK--GFQVP 417
>gi|239610242|gb|EEQ87229.1| coenzyme A synthetase [Ajellomyces dermatitidis ER-3]
gi|327357832|gb|EGE86689.1| peroxisomal-coenzyme A synthetase [Ajellomyces dermatitidis ATCC
18188]
Length = 513
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 69/167 (41%), Gaps = 56/167 (33%)
Query: 73 EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGDLGYFDS-- 128
E+ I D++G + G++CIR E INNP AN+ +F + G+F +GD G D
Sbjct: 336 EVRILDQDGNEVPQGSEGEICIRGENVTKGYINNPAANEASFTKSGFFRTGDQGKMDKDG 395
Query: 129 --------QRCLNMW--KISPTEVD----------------------------------- 143
+ +N KISP E+D
Sbjct: 396 YVFITGRIKELINKGGEKISPIELDNTIAHNPNIAEAVSFAIPDTHYGEDIGVAVVLKKG 455
Query: 144 ------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+K + VA FK+PKK++I + K TGKIQRR VAE
Sbjct: 456 GSLSEDTLKSWIAPKVAKFKIPKKIWILPEIP-KTATGKIQRRKVAE 501
>gi|413923542|gb|AFW63474.1| putative AMP-dependent synthetase and ligase superfamily protein
[Zea mays]
Length = 553
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K S G VR E+ + D + G+ N+ G++CIR GP + +
Sbjct: 375 LSMCPAFAKEP--APAKPGSCGTVVRNAELKVVDPDTGLSLGRNLPGEICIR-GPQIMKG 431
Query: 103 -INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA +T GW +GD+GY D + + VD VKE K F+VP
Sbjct: 432 YLNDPEATARTIDVHGWLHTGDIGYVDDDDEVFI-------VDRVKELIKFK--GFQVP 481
>gi|387316215|gb|AFJ73462.1| 4-coumarate: coenzyme A ligase, partial [Araucaria excelsa]
Length = 442
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 13/94 (13%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR--INNPEAN-KTAFQFG 116
K+ S G VR EM I D E G+ N G++CIR GP + + +N+PEA K Q G
Sbjct: 329 KSGSCGTVVRNAEMKIIDPETGLSLPYNQQGEICIR-GPQIMKGYMNDPEATGKIIDQDG 387
Query: 117 WFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
W SGD+G+ D L + VD VKE K
Sbjct: 388 WLHSGDIGFIDEDEELFI-------VDRVKELIK 414
>gi|440701224|ref|ZP_20883426.1| long-chain-fatty-acid--CoA ligase [Streptomyces turgidiscabies
Car8]
gi|440276120|gb|ELP64433.1| long-chain-fatty-acid--CoA ligase [Streptomyces turgidiscabies
Car8]
Length = 501
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQ 114
LP+ G K SVG+P E+ I D +G V G++ + GP V R + + +++
Sbjct: 315 LPERGALKQGSVGRPTGVELRIVDRSGRACPVGVEGEVWV-HGPTVARGYLADRDGSSYT 373
Query: 115 F--GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVKEFC 149
F GW +GDLG D++ L++ KISP V+ + C
Sbjct: 374 FVDGWLRTGDLGTLDAEGYLSLTGRIKNLINRGGEKISPEHVEDILAGC 422
>gi|269126928|ref|YP_003300298.1| AMP-dependent synthetase and ligase [Thermomonospora curvata DSM
43183]
gi|268311886|gb|ACY98260.1| AMP-dependent synthetase and ligase [Thermomonospora curvata DSM
43183]
Length = 531
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 59/218 (27%)
Query: 24 LFYKGRVYLP-PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENG 81
LF R P RL G +T S T L + K SVG P V ++ + D G
Sbjct: 291 LFKVARALFPNARLIEGYGLTETCSGLTY--LDEAHMETKPGSVGLPLVGVDVRVVDPAG 348
Query: 82 VDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFLSGDLGYFDS-------QRCL 132
D G++ R GP V +++PEA AF+ GWF +GD+G FD R
Sbjct: 349 NDVGVGAEGEVVAR-GPKVSPGYLDDPEATAEAFRDGWFHTGDIGCFDEDGYLYIRDRLK 407
Query: 133 NMWK-----ISPTEVDAVK---------------------------------------EF 148
+M + +S E++ V E
Sbjct: 408 DMIRSGGENMSSAEIENVLADHPKVLAVAVVGAPHPRWVEVPVAFVVGRPGLDAADLIEH 467
Query: 149 CKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
+R + FKVPK++++ + L P +GKI +R + E+R
Sbjct: 468 ARRRLGGFKVPKEIYLVEELPTNP-SGKILKRSLREMR 504
>gi|156399331|ref|XP_001638455.1| predicted protein [Nematostella vectensis]
gi|156225576|gb|EDO46392.1| predicted protein [Nematostella vectensis]
Length = 542
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 54 LLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEAN 109
L+ + K +SVG+ P + + + GV Q A G++CI+ GP++ + +NNPEA
Sbjct: 342 LIGRKNLKKPASVGEVLPCSQVKVVDLKTGVAQPAGKQGEICIK-GPLMMKGYLNNPEAT 400
Query: 110 KTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
GW +GD+GY+D Q + V VKE K F+VP
Sbjct: 401 ANTIDHEGWLHTGDIGYYDDQEHFYI-------VGRVKELIKYK--GFQVP 442
>gi|108797289|ref|YP_637486.1| acyl-CoA synthetase [Mycobacterium sp. MCS]
gi|119866374|ref|YP_936326.1| acyl-CoA synthetase [Mycobacterium sp. KMS]
gi|126432913|ref|YP_001068604.1| acyl-CoA synthetase [Mycobacterium sp. JLS]
gi|108767708|gb|ABG06430.1| AMP-dependent synthetase and ligase [Mycobacterium sp. MCS]
gi|119692463|gb|ABL89536.1| AMP-dependent synthetase and ligase [Mycobacterium sp. KMS]
gi|126232713|gb|ABN96113.1| AMP-dependent synthetase and ligase [Mycobacterium sp. JLS]
Length = 537
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P A S G+PV E I DE+ V G++ R M+ +++
Sbjct: 345 LGPDEQDAHAGSAGRPVVNVETTILDEDDTPVATGVVGEIAHRSPHLMLGYLDDAAKTAE 404
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGY+D L++ VD K+ K NVAS +V + ++
Sbjct: 405 AFRGGWFHSGDLGYYDEHGLLHV-------VDRKKDMIKTGGENVASREVEETLY 452
>gi|406663894|ref|ZP_11071904.1| Long-chain-fatty-acid--CoA ligase [Cecembia lonarensis LW9]
gi|405551834|gb|EKB47454.1| Long-chain-fatty-acid--CoA ligase [Cecembia lonarensis LW9]
Length = 561
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 62/205 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++VC P +G + ++G P+ ++ I D+NG D G++CI+
Sbjct: 358 YGLTETSPVAVCN-----PIDGTERIGTIGIPLPNTDVKIIDDNGNDLPVGERGELCIK- 411
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV 142
GP V R PE + WF +GD+ D + + + + P EV
Sbjct: 412 GPQVMRGYWQKPEETEKVMDRDWFKTGDIAVIDEDGFVKIVDRKKEMILVSGFNVYPNEV 471
Query: 143 ----------------------------------------DAVKEFCKRNVASFKVPKKV 162
+ + C+ + ++KVP++V
Sbjct: 472 ENAIAMHPKVLETGVIGMPDDKSTEKVVAYVVPKDKSVTAEELIAHCRNELTNYKVPREV 531
Query: 163 FIADSLSGKPLTGKIQRRIVAELRK 187
AD L K GKI RR + E+ +
Sbjct: 532 HFADELP-KTNVGKILRRKIKEMHE 555
>gi|379762160|ref|YP_005348557.1| acyl-CoA synthetase [Mycobacterium intracellulare MOTT-64]
gi|378810102|gb|AFC54236.1| acyl-CoA synthetase [Mycobacterium intracellulare MOTT-64]
Length = 532
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANKT 111
L P S G+PV E AI D++ A G++ R + +++PE
Sbjct: 338 LGPDEQDAHGGSAGRPVLNVETAILDDDDNPVTAGAVGEIAHRSPHLTPGYLDDPERTAA 397
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGYFD L++ VD K+ NVAS +V + ++
Sbjct: 398 AFKGGWFHSGDLGYFDEHGLLHV-------VDRKKDMINSGGENVASREVEEILY 445
Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 140 TEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
TE D V C+ +A FK PK+VF D L P +GK+ +R++ E
Sbjct: 480 TEEDLVSH-CRERLAGFKTPKRVFFVDELPKNP-SGKLLKRVLRE 522
>gi|433605789|ref|YP_007038158.1| Long-chain-fatty-acid-CoA ligase [Saccharothrix espanaensis DSM
44229]
gi|407883642|emb|CCH31285.1| Long-chain-fatty-acid-CoA ligase [Saccharothrix espanaensis DSM
44229]
Length = 497
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 64/176 (36%), Gaps = 56/176 (31%)
Query: 60 PHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGW 117
P KA S+G PV EM + D G + G++ +R M NPEA A GW
Sbjct: 313 PRKAGSIGTPVAGVEMRVLDPAGREVPDGDTGEIAVRGHNVMKGYWRNPEATAEAIPDGW 372
Query: 118 FLSGDLGYFDSQRCLNM------------WKISPTEV----------------------- 142
+GDLG D C + + + P E+
Sbjct: 373 LRTGDLGVRDEDGCFRIVDRKKDLIIRGGFNVYPREIEELLYEHPAVAEVAVVGVPHPLH 432
Query: 143 ------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+ ++EF K VA +K P+ V I D+L P TGKI +R
Sbjct: 433 GEEVVAVVALKAGSDTTPEELREFAKSQVAPYKYPRAVQIVDALPKGP-TGKILKR 487
>gi|393199451|ref|YP_006461293.1| acyl-CoA synthetase/AMP-acid ligase II [Solibacillus silvestris
StLB046]
gi|327438782|dbj|BAK15147.1| acyl-CoA synthetase/AMP-acid ligase II [Solibacillus silvestris
StLB046]
Length = 516
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 57/187 (30%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P + K S+G+ + E + DENG + G++ +R GP V + N PE A
Sbjct: 331 PTDRERKPGSIGQSISNVENKVVDENGDEVGVGEVGELIVR-GPNVMKGYYNMPEETAVA 389
Query: 113 FQFGWFLSGDL------GYF---DSQRCLNM---WKISPTEVD----------------- 143
+ GW +GDL GYF D ++ + + + + P EV+
Sbjct: 390 IRDGWLYTGDLARKDEEGYFYIVDRKKDMIIVGGYNVYPREVEEVLFSHEGIVEAAVVGF 449
Query: 144 -----------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
A++EFC + +KVP + I D L K TGKI RR
Sbjct: 450 PDLDFGEAVHAYVVLKNPSLTVEAIREFCADRIVKYKVPTVIEILDELP-KNTTGKILRR 508
Query: 181 IVAELRK 187
+ E+ +
Sbjct: 509 SLKEIAR 515
>gi|288931931|ref|YP_003435991.1| AMP-dependent synthetase and ligase [Ferroglobus placidus DSM
10642]
gi|288894179|gb|ADC65716.1| AMP-dependent synthetase and ligase [Ferroglobus placidus DSM
10642]
Length = 534
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 58/148 (39%)
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDS----------QRCLNM--WKISP 139
+ +GP + + NNP+ + A + GW +GDLGY D + +N+ +K+ P
Sbjct: 381 VAKGPQIMKGYWNNPKETEEALRDGWLRTGDLGYMDENGLFYYVDRVKDLINVAGYKVWP 440
Query: 140 TEV-------------------DAVK------------------------EFCKRNVASF 156
EV D +K E CKR +A F
Sbjct: 441 DEVENVIYEHPAVLECAVVSSPDEIKGEVPKAYIVLKEEFKGRVSAEDIIEHCKRKLAPF 500
Query: 157 KVPKKVFIADSLSGKPLTGKIQRRIVAE 184
KVPKKV D L P+ GKI RRI+ E
Sbjct: 501 KVPKKVEFVDELPKSPV-GKILRRILRE 527
>gi|408676013|ref|YP_006875840.1| Long-chain-fatty-acid--CoA ligase [Streptomyces venezuelae ATCC
10712]
gi|328880342|emb|CCA53581.1| Long-chain-fatty-acid--CoA ligase [Streptomyces venezuelae ATCC
10712]
Length = 501
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
R LP F CF S I VL P+ + S G+PVR E + DE+G D
Sbjct: 290 RARLPGLRFFNCFGQSEIGPLAT-VLGPEEHEGRMESCGRPVRHVEARVVDEDGEDVPDG 348
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + E + AF+ GWF SGDL D++ L + VD VK
Sbjct: 349 TPGEIVYRSPQLCEGYWRKSEETEAAFRGGWFHSGDLAVRDAEGYLTI-------VDRVK 401
Query: 147 EFCKRN---VASFKVPKKVF 163
+ VAS +V ++
Sbjct: 402 DVINSGGVLVASRQVEDALY 421
>gi|406666693|ref|ZP_11074458.1| Long-chain-fatty-acid--CoA ligase [Bacillus isronensis B3W22]
gi|405385463|gb|EKB44897.1| Long-chain-fatty-acid--CoA ligase [Bacillus isronensis B3W22]
Length = 516
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 57/187 (30%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P + K S+G+ + E + DENG + G++ +R GP V + N PE A
Sbjct: 331 PTDRERKPGSIGQSISNVENKVVDENGDEVGVGEVGELIVR-GPNVMKGYYNMPEETAVA 389
Query: 113 FQFGWFLSGDL------GYF---DSQRCLNM---WKISPTEVD----------------- 143
+ GW +GDL GYF D ++ + + + + P EV+
Sbjct: 390 IRDGWLYTGDLARKDEEGYFYIVDRKKDMIIVGGYNVYPREVEEVLFSHEGIVEAAVVGF 449
Query: 144 -----------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
A++EFC + +KVP + I D L K TGKI RR
Sbjct: 450 PDLDFGEAVHAYVVLKDPSLTVEAIREFCADRIVKYKVPTVIEILDELP-KNTTGKILRR 508
Query: 181 IVAELRK 187
+ E+ +
Sbjct: 509 SLKEIAR 515
>gi|75760872|ref|ZP_00740885.1| Long-chain-fatty-acid--CoA ligase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228905550|ref|ZP_04069499.1| Long-chain-fatty-acid--CoA ligase [Bacillus thuringiensis IBL 4222]
gi|74491634|gb|EAO54837.1| Long-chain-fatty-acid--CoA ligase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228854086|gb|EEM98795.1| Long-chain-fatty-acid--CoA ligase [Bacillus thuringiensis IBL 4222]
Length = 493
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 54/187 (28%)
Query: 54 LLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKT 111
L P K SVGKP++ + I DE G++ + + NG++ ++ + M +N P+ +
Sbjct: 304 LEPSMLEQKLGSVGKPIKGVTLKIVDEEGIEVEHDENGEIIVKGDNIMSGYLNMPDETEK 363
Query: 112 AFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD---------------- 143
+ W +GD+GY DS + + ++ISP E++
Sbjct: 364 VLKDRWLYTGDIGYKDSDGYIYIIRRKNDIIKYLGYRISPVEIENYINMHDNILESAVVE 423
Query: 144 -----------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+ + +R + S+K+P ++ D L K GKI+R
Sbjct: 424 CRKEENVKIAAVIVLKNEKLDINDLSQILRRKLPSYKIPSILYTVDKLP-KTSNGKIKRS 482
Query: 181 IVAELRK 187
+ E+ K
Sbjct: 483 ELKEMLK 489
>gi|393765039|ref|ZP_10353633.1| acyl-CoA synthetase [Methylobacterium sp. GXF4]
gi|392729528|gb|EIZ86799.1| acyl-CoA synthetase [Methylobacterium sp. GXF4]
Length = 546
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 57/167 (34%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ- 129
++ I D +G + A G++C+ GP V NNPEAN AF+ GWF +GDLG+ D +
Sbjct: 364 QVQIQDGDGRELPAGETGEICVC-GPAVFAGYYNNPEANTAAFRNGWFRTGDLGHLDPEG 422
Query: 130 ------RCLNMW-----KISPTEVD-------AVKE------------------------ 147
R +M+ + P E + A+ E
Sbjct: 423 FLFITGRASDMYISGGSNVYPRETEERLLRHPAIAEAAILGVPDPAWGEVGVAVCVTRPG 482
Query: 148 ----------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+ VA +K+PK+VF D+L K GKI +R + E
Sbjct: 483 TEVGEAELIAWLSGEVARYKLPKRVFFWDALP-KSGYGKITKRAIRE 528
>gi|336114765|ref|YP_004569532.1| o-succinylbenzoate--CoA ligase [Bacillus coagulans 2-6]
gi|335368195|gb|AEH54146.1| O-succinylbenzoate-CoA ligase [Bacillus coagulans 2-6]
Length = 484
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 65/191 (34%)
Query: 53 VLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV-----NGKMCIREGPMVQ--RINN 105
L P++ K S GKP+ P + + V +G++ ++ GP V +N
Sbjct: 298 TLAPEDSLRKIGSAGKPL-----FPAQIRIVSDGKVCGPFEHGEIAVK-GPNVTIGYLNR 351
Query: 106 PEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVD---------- 143
P+AN+ +F+ GWF +GD+GY D + L + I P E++
Sbjct: 352 PDANRKSFREGWFFTGDIGYLDDEGFLYVLDRRSDLIISGGENIYPAEIEEVLLAHPDIL 411
Query: 144 ------------------------AVKE-----FCKRNVASFKVPKKVFIADSLSGKPLT 174
AV+E FC+ +A FK+PKKV+ +L + +
Sbjct: 412 EAGVIGVEDEKWGQVPAAFIVTKRAVRERELQAFCETRLAKFKIPKKVYAVPALP-RNAS 470
Query: 175 GKIQRRIVAEL 185
K+ RR + EL
Sbjct: 471 NKLVRRKLLEL 481
>gi|169825875|ref|YP_001696033.1| long-chain fatty-acid-CoA ligase [Lysinibacillus sphaericus C3-41]
gi|168990363|gb|ACA37903.1| long-chain fatty-acid-CoA ligase [Lysinibacillus sphaericus C3-41]
Length = 498
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
LL + K SVGKP+ + E+ + D G A G++C+R GP V + + NPE
Sbjct: 309 LLDTDALTKIGSVGKPLEQTEVRVVDSEGKLVPAGEVGEICVR-GPQVMKGYLRNPEETA 367
Query: 111 TAFQFGWFLSGDLGYFDSQRCL 132
GW SGDLG FD + L
Sbjct: 368 RTIIDGWLYSGDLGRFDEEGYL 389
>gi|409358567|ref|ZP_11236930.1| acyl-CoA synthetase [Dietzia alimentaria 72]
Length = 518
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 22 VFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDEN 80
V + + R + P + CF S I VL P+ + +S G+ V E + DE
Sbjct: 302 VTVLQRLRAHYPDLGFYNCFGQSEIGPLAC-VLRPEEHDARPASAGRAVFFVEARVVDEA 360
Query: 81 GVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISP 139
GVD G++ R + Q N PEA AF+ GWF SGDL D++ + +
Sbjct: 361 GVDVADGERGEVVYRSPQLCQGYWNKPEATAEAFRDGWFHSGDLVVRDAEGFIEV----- 415
Query: 140 TEVDAVKEFCKRN---VASFKVPKKVFIADSLSGKPLTGKIQRR 180
VD +K+ VAS +V V++ + ++ + G R
Sbjct: 416 --VDRIKDVINTGGVLVASREVEDAVYMDERVAEVAVIGTPDNR 457
>gi|295697204|ref|YP_003590442.1| AMP-dependent synthetase and ligase [Kyrpidia tusciae DSM 2912]
gi|295412806|gb|ADG07298.1| AMP-dependent synthetase and ligase [Kyrpidia tusciae DSM 2912]
Length = 525
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 70/184 (38%), Gaps = 56/184 (30%)
Query: 52 FVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEAN 109
+L P++ K + GKP + E I D+ G + G++ R M+ N+PE
Sbjct: 328 MILRPEDQLRKPGAAGKPCINVESKIVDDEGREVPPGTVGEIVHRTPHAMIGYYNDPEKT 387
Query: 110 KTAFQFGWFLSGDLGYFDS-------QRCLNMWKIS------------------------ 138
AF+ GWF SGDLG D R +M K
Sbjct: 388 AAAFEDGWFHSGDLGVMDEDGYFTVVDRKKDMIKTGGENVASREVEEAIYQHPGVAEVAV 447
Query: 139 -----PTEVDAVK-----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGK 176
P ++AV FC+ +A FKVPK V I ++L P +GK
Sbjct: 448 IGVPHPYWIEAVTAVVVPKAGSRLTEEELIAFCRERLAGFKVPKFVVITEALPKNP-SGK 506
Query: 177 IQRR 180
I +R
Sbjct: 507 ILKR 510
>gi|227549740|ref|ZP_03979789.1| acyl-CoA synthetase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078175|gb|EEI16138.1| acyl-CoA synthetase [Corynebacterium lipophiloflavum DSM 44291]
Length = 573
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 65/205 (31%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKA--NVNGKMCI 94
+G TS I P +G H+ +G P E+ I + + +D+ G++
Sbjct: 357 YGLTETSPILTAN-----PMDGNHRPGYIGLPFPNTEIRIANPDNLDETMPDGEPGELLA 411
Query: 95 REGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPT 140
R GP V + +N PEA + AF GWF +GD+G +S + + + + P
Sbjct: 412 R-GPQVFKGYLNKPEATEKAFHDGWFRTGDMGVMESDGFVRLVSRIKEMIITGGFNVYPD 470
Query: 141 EV-----------------------------------------DAVKEFCKRNVASFKVP 159
EV DA+ E+ + + ++KVP
Sbjct: 471 EVEKVMKEHPDIDDIAVVGRPRTDGSEDVVACVTLREGAVIESDALHEYARERLTAYKVP 530
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAE 184
+ + + L+ + +TGKI+RR V E
Sbjct: 531 RTFYHFEELA-RDMTGKIRRREVQE 554
>gi|299134863|ref|ZP_07028055.1| AMP-dependent synthetase and ligase [Afipia sp. 1NLS2]
gi|298590673|gb|EFI50876.1| AMP-dependent synthetase and ligase [Afipia sp. 1NLS2]
Length = 508
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 72/186 (38%), Gaps = 56/186 (30%)
Query: 49 CTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INN 105
++ V+ P GP K S+G+P+ E+ I D G + A G++ IR GP V + +
Sbjct: 306 TSINVMNPLRGPRKPGSIGRPLPPSEIRIVDGQGKELPAGATGEIEIR-GPTVMKGYYKD 364
Query: 106 PEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------AVK 146
P+A + GW SGDL D + + ISP EV+ AV+
Sbjct: 365 PDATAATIRGGWVRSGDLAKVDDDGYIFIVGRKKETIIRGGENISPLEVEQIIARHPAVR 424
Query: 147 E--------------------------------FCKRNVASFKVPKKVFIADSLSGKPLT 174
E C +ASFKVP ++ D L P+
Sbjct: 425 EAAAVGIPDRIYGEVVAACVVKRDDVTESELIRHCSEYLASFKVPARIAFVDELPRNPI- 483
Query: 175 GKIQRR 180
GK RR
Sbjct: 484 GKFIRR 489
>gi|374629512|ref|ZP_09701897.1| AMP-dependent synthetase and ligase [Methanoplanus limicola DSM
2279]
gi|373907625|gb|EHQ35729.1| AMP-dependent synthetase and ligase [Methanoplanus limicola DSM
2279]
Length = 533
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 60/209 (28%)
Query: 19 YTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV---RREMA 75
+ V+ + R +P +G T + T + + SVGKPV ++
Sbjct: 298 HPGVWKEFHSRFGIPIVNAYGLSETIVVGTGTAIIPGDYESADRYRSVGKPVGYSEVKIV 357
Query: 76 IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAF-QFGWFLSGDLGYFD----- 127
P++ + A G++ +R GP V + N PE F GWFL+GD+G+ D
Sbjct: 358 SPEDPATELPAEETGEIALR-GPGVAKGYWNMPEETAAVFIDDGWFLTGDMGFIDPDGRV 416
Query: 128 --SQRCLNM-----WKISPTEVD------------------------------------- 143
+ R +M WKI PTE++
Sbjct: 417 SITDRKKDMIVMSGWKIYPTEIEKAMIEHPDIDDIALFGCPDVHRGEIPVAAVVPADGRV 476
Query: 144 ----AVKEFCKRNVASFKVPKKVFIADSL 168
A+++F K +A +KVP++ I D L
Sbjct: 477 LDTGALEDFAKSRLAGYKVPRRYIIIDEL 505
>gi|295659616|ref|XP_002790366.1| 4-coumarate-CoA ligase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281818|gb|EEH37384.1| 4-coumarate-CoA ligase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 512
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + +VG E+ I DE+G + G++C+R E +NNP AN+++F + G
Sbjct: 321 GKRQPGTVGIGQGVEVKILDEDGNEVPQGFEGEICVRGENVTKGYLNNPAANESSFTKSG 380
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVDAV------------------- 145
+F +GD G D + +N KISP E+D +
Sbjct: 381 FFRTGDQGKKDKDGYVFITGRIKELINRGGEKISPIELDNIIAHNPNVAEAVSFAIPDAH 440
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K + VA FK+PKK++I + K TGKIQRR VA
Sbjct: 441 YGEDIGVAVVLKQKGSMSEDKLKSWIAPKVAKFKIPKKIWILPEIP-KTATGKIQRRKVA 499
Query: 184 E 184
E
Sbjct: 500 E 500
>gi|209551944|ref|YP_002283860.1| acyl-CoA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209539537|gb|ACI59468.1| AMP-dependent synthetase and ligase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 542
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 60/203 (29%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT AI+V + ++GP + + G + ++ + D+ G++ G++C+ GP
Sbjct: 328 VTGAIAVLPPILHSVEDGPDVRIGTCGYERTGMQVQVQDDAGLEMPPGETGEVCVI-GPA 386
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEV--- 142
V NPEAN +F+ GWF +GDLG+ D++ R +M+ + P E+
Sbjct: 387 VFAGYYRNPEANAKSFRDGWFRTGDLGHMDAEGFLYLTGRASDMYISGGSNVYPREIEEK 446
Query: 143 --------------------------------------DAVKEFCKRNVASFKVPKKVFI 164
D + E+ VA +K+PK+ I
Sbjct: 447 LLQHPGLSEVAILGVPDPVWGEVGIAVCVARDGHRLDGDTLNEWLDGKVARYKLPKRYII 506
Query: 165 ADSLSGKPLTGKIQRRIV-AELR 186
D+L K GKI +++V AEL
Sbjct: 507 WDALP-KSAYGKIAKKLVKAELE 528
>gi|53804105|ref|YP_114021.1| long-chain fatty acid CoA ligase [Methylococcus capsulatus str.
Bath]
gi|53757866|gb|AAU92157.1| putative long-chain fatty-acid-CoA ligase [Methylococcus capsulatus
str. Bath]
Length = 510
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAF 113
P GP K +VG PV EM I E+GV+ G++ +R + + N PEA + F
Sbjct: 320 PVAGPVKRGTVGLPVPGVEMKILGEDGVELPRGELGEIAVRGANVFKGYWNQPEATRECF 379
Query: 114 QFGWFLSGDLGYFDSQ 129
+ GWFL+GDLG D
Sbjct: 380 RDGWFLTGDLGQVDDD 395
>gi|397734021|ref|ZP_10500732.1| feruloyl-CoA synthetase [Rhodococcus sp. JVH1]
gi|396930098|gb|EJI97296.1| feruloyl-CoA synthetase [Rhodococcus sp. JVH1]
Length = 524
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 56/184 (30%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P++ + S GKP + E I D+ + A G++ R V + PE
Sbjct: 332 LGPEDQETRGGSAGKPALNVETRIVDDRDLPLPAGEVGEIVHRSPHATVGYLGQPEKTAE 391
Query: 112 AFQFGWFLSGDLGYFDSQRCL-------NMWKISPT------------EVDAVKE----- 147
AF GWF SGDLGY D L +M K E+D V E
Sbjct: 392 AFAGGWFHSGDLGYLDEDGYLWVVDRKKDMIKTGGENVATREVEETLYELDGVGEAAVFA 451
Query: 148 -----------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
C+ +A +KVPK V +ADSL P +GKI
Sbjct: 452 VPHPRWIEAVAAVVVPAAGVELDEKDVVEHCRGRLAGYKVPKYVIVADSLPKNP-SGKIL 510
Query: 179 RRIV 182
+R++
Sbjct: 511 KRVL 514
>gi|254474534|ref|ZP_05087920.1| AMP-dependent synthetase and ligase [Ruegeria sp. R11]
gi|214028777|gb|EEB69612.1| AMP-dependent synthetase and ligase [Ruegeria sp. R11]
Length = 514
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE---GPMVQ 101
+S C+ F+ P S++G+P R +A+ D+ G + G + I + G M+
Sbjct: 311 MSECSTFISASPTNPAPVSALGRPQPGRRIAVLDDTGAPVPLDTPGIIAIDQSDPGLMIG 370
Query: 102 RINNPEANKTAFQFGWFLSGD------------LGYFDSQRCLNMWKISPTEVDAV 145
N PEA K GWFL+GD LG D +++SP EV+A
Sbjct: 371 YFNAPEATKARLCNGWFLTGDRGTMSHDGLIHYLGRNDDMMNAGGYRVSPMEVEAT 426
>gi|111020949|ref|YP_703921.1| acyl-CoA synthetase [Rhodococcus jostii RHA1]
gi|110820479|gb|ABG95763.1| acyl-CoA synthetase [Rhodococcus jostii RHA1]
Length = 524
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 56/184 (30%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P++ + S GKP + E I D+ + A G++ R V + PE
Sbjct: 332 LGPEDQETRGGSAGKPALNVETRIVDDRDLPLPAGEVGEIVHRSPHATVGYLGQPEKTAE 391
Query: 112 AFQFGWFLSGDLGYFDSQRCL-------NMWKISPT------------EVDAVK------ 146
AF GWF SGDLGY D L +M K E+D V
Sbjct: 392 AFAGGWFHSGDLGYLDEDGYLWVVDRKKDMIKTGGENVATREVEETLYELDGVGEAAVFA 451
Query: 147 ----------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E C+ +A +KVPK V +ADSL P +GKI
Sbjct: 452 VPHPRWIEAVAAVVVPAAGVELDEKDVVEHCRGRLAGYKVPKYVIVADSLPKNP-SGKIL 510
Query: 179 RRIV 182
+R++
Sbjct: 511 KRVL 514
>gi|392951377|ref|ZP_10316932.1| acyl-CoA synthetase [Hydrocarboniphaga effusa AP103]
gi|391860339|gb|EIT70867.1| acyl-CoA synthetase [Hydrocarboniphaga effusa AP103]
Length = 533
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEAN 109
+L P++ K S G+P + E + D+ V G++ R GP V NPE
Sbjct: 337 ILKPEDQMRKLGSAGRPAINVETCVVDDEDRPVPVGVIGEIVHR-GPHVTLGYWKNPEKT 395
Query: 110 KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIAD 166
AF+ GWF SGDLG D + L++ VD K+ K NVAS +V + +F
Sbjct: 396 AEAFRNGWFHSGDLGVMDEEGYLSV-------VDRKKDMIKTGGENVASREVEEMIFTHA 448
Query: 167 SLS 169
S+S
Sbjct: 449 SVS 451
>gi|126731244|ref|ZP_01747051.1| benzoate-coenzyme A ligase, putative [Sagittula stellata E-37]
gi|126708155|gb|EBA07214.1| benzoate-coenzyme A ligase, putative [Sagittula stellata E-37]
Length = 504
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 41 FVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCI-REGP 98
F +S C+ F+ P ++G+P + R +AI DE+G + G + I R+ P
Sbjct: 303 FEAYGMSECSTFISNAPARPSAPGTLGRPQLGRHLAIVDEDGAPVARGMPGTIAIHRDDP 362
Query: 99 --MVQRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNM-----WKISPTEVDA 144
M++ + +A F WFL+GDLG D R +M +++SP EV+A
Sbjct: 363 GLMLRYVGAEDATAEKFAGDWFLTGDLGAMDDDDQISYLGRSDDMMNAGGYRVSPLEVEA 422
Query: 145 V 145
Sbjct: 423 A 423
>gi|423096895|ref|ZP_17084691.1| long-chain-fatty-acid--CoA ligase [Pseudomonas fluorescens Q2-87]
gi|397886522|gb|EJL03005.1| long-chain-fatty-acid--CoA ligase [Pseudomonas fluorescens Q2-87]
Length = 562
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPVRRE-MAIPDENGVDQKANVNGKMCI 94
GC +T + V P G + +VG PV M + +++GV+Q G++CI
Sbjct: 358 GCGITEGYGLTETSPVACANPYGGKSRLGTVGLPVPGTLMKVINDDGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + N PEA GWF SGD+ D + + + + P
Sbjct: 418 K-GPQIMKGYWNKPEATAEVLDSEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N +K+P
Sbjct: 477 NEIEDVVMAHPKVASCAVIGVPDERSGEAVKLFVVARETGVSLEELKAYCKENFTGYKIP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|374991416|ref|YP_004966911.1| AMP-dependent synthetase and ligase [Streptomyces bingchenggensis
BCW-1]
gi|297162068|gb|ADI11780.1| AMP-dependent synthetase and ligase [Streptomyces bingchenggensis
BCW-1]
Length = 541
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 83/204 (40%), Gaps = 60/204 (29%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
F F + +S T VL ++ K SVG+PV E+ + +G + G++ R
Sbjct: 334 FNMFGQTEMSSVTC-VLRGEDAIRKMGSVGRPVPNLEVRLVGRDGTEVGPGEVGEIVYR- 391
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEV 142
GP V R NNPEA + AFQ GWF SGDL D R ++ K I EV
Sbjct: 392 GPTVMRGYWNNPEATREAFQGGWFHSGDLCTVDEDGFYRVVDRAKDMIISGGENIYCAEV 451
Query: 143 DAVKE------------------------------------------FCKRNVASFKVPK 160
+AV + C+ +AS+K P
Sbjct: 452 EAVIDAHSKVSEVAVVGAWHPKWVETPVAFVVPADPADPPTEQEIIAHCRERLASYKKPT 511
Query: 161 KVFIADSLSGKPLTGKIQRRIVAE 184
+V +A S+ + TGKIQ+ ++ E
Sbjct: 512 RVIVARSVP-RTATGKIQKFLLRE 534
>gi|91974529|ref|YP_567188.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
BisB5]
gi|91680985|gb|ABE37287.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
BisB5]
Length = 517
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 50 TVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNP 106
TV +L + G K S G P V E I D++G G++C+R GP + N P
Sbjct: 316 TVTILSAERGFDKLGSAGLPIVHVETLIADKDGAAVAPGDIGELCVR-GPSITTGYWNRP 374
Query: 107 EANKTAFQFGWFLSGDL------GYFD-SQRCLNMW-----KISPTEVDAVKE 147
E +++AF+ GWF +GD+ GYF R NM+ + P EV+ V E
Sbjct: 375 EESRSAFRDGWFRTGDMARQDEDGYFYIVDRSKNMYISGGENVYPAEVERVIE 427
>gi|418473468|ref|ZP_13043050.1| acyl-CoA synthetase [Streptomyces coelicoflavus ZG0656]
gi|371545920|gb|EHN74498.1| acyl-CoA synthetase [Streptomyces coelicoflavus ZG0656]
Length = 502
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R +LP + CF S I VL P + S G+PV + + DE+G D
Sbjct: 291 RSHLPHLAFYNCFGQSEIGPLAT-VLGPDEHEGRMDSCGRPVLFVDARVVDEDGKDVPDG 349
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + + PE + AF+ GWF SGDL D+ + VD VK
Sbjct: 350 TPGEVVYRSPQLCEGYWDKPEETEAAFRDGWFHSGDLAVRDADGYYTI-------VDRVK 402
Query: 147 EFCKRN---VASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ VAS +V ++ D+++ + G R +
Sbjct: 403 DVINSGGVLVASRQVEDALYTHDAVAEAAVVGLPDERWI 441
>gi|453075051|ref|ZP_21977840.1| fatty-acid--CoA ligase [Rhodococcus triatomae BKS 15-14]
gi|452763684|gb|EME21962.1| fatty-acid--CoA ligase [Rhodococcus triatomae BKS 15-14]
Length = 499
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 19/163 (11%)
Query: 2 TMNPLSIHGAAQLTITPYTNVFLFYKGRVYLPPRL------EFGCFVTSAISVCTVFVLL 55
TM +H AA L T + ++ + G LP + FGC + + L
Sbjct: 245 TMWNAMLHAAADLDATDFAHLRVAVSGGASLPGEIARAFESRFGCTILEGYGLTETTALG 304
Query: 56 PKNGPHKASSVGKPV----RREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANK 110
N + +G R ++ + D++G A G++ ++ E M N P+A
Sbjct: 305 TFNDVERGGKIGYTGAAVPRTQVEVRDDDGRPCAAGTVGEVHVKGETVMSGYWNRPDATA 364
Query: 111 TAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN 152
AF GWF +GDLG FD L + VD +K+ R
Sbjct: 365 AAFTDDGWFRTGDLGEFDGDGDLRI-------VDRLKDLVIRG 400
>gi|91974833|ref|YP_567492.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
BisB5]
gi|91681289|gb|ABE37591.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
BisB5]
Length = 536
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQR 130
++AI D++G + G++ R GPMV + +PEA AF+ GWF SGDLG FD
Sbjct: 361 DLAIMDDDGRLVEDGSVGEIVYR-GPMVMEGYLKDPEATARAFEGGWFHSGDLGRFDEDS 419
Query: 131 CLNMWKISPTEVDAVKEFCK---RNVASFKV 158
L VD K+ K NV+S KV
Sbjct: 420 LLLF-------VDRKKDIIKSGGENVSSVKV 443
>gi|385680970|ref|ZP_10054898.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Amycolatopsis
sp. ATCC 39116]
Length = 495
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 56 PKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAF 113
P++ + S+G+P+R RE+ I D++G G++ IR G M ++PEA AF
Sbjct: 301 PEDHRPGSGSIGRPIREREVVIADDDGKPVPRGRTGELLIRGVGLMHGYHDDPEATARAF 360
Query: 114 QFGWFLSGDLGYFDSQ 129
+ GWF +GDL D++
Sbjct: 361 RGGWFHTGDLATMDAE 376
>gi|381397811|ref|ZP_09923220.1| AMP-dependent synthetase and ligase [Microbacterium laevaniformans
OR221]
gi|380774939|gb|EIC08234.1| AMP-dependent synthetase and ligase [Microbacterium laevaniformans
OR221]
Length = 572
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 62/200 (31%)
Query: 45 AISVCT-VFVLLPKNGPHKASSVGKPV---RREMAIPDENGVDQKANVNGKMCIREGPMV 100
+S C+ V + P KA +VG P+ + PDE VD A G++ +R GP V
Sbjct: 364 GLSECSPVLMANPVADNRKAGTVGLPLPGTECRVVDPDEPTVDVPAGERGELIVR-GPQV 422
Query: 101 QR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV---- 142
+ PEA + F GWF +GD+ D + + + ++PTEV
Sbjct: 423 FQGYYGKPEATEQVFVDGWFRTGDIVQIDDDGFVRIVDRIKELIITGGFNVAPTEVENAL 482
Query: 143 --------------------------------------DAVKEFCKRNVASFKVPKKVFI 164
++++E+ + + +KVP+++F+
Sbjct: 483 RQHPRVVDAAVVGLPSEHSGEEVVAAVVLDGSGVEVDTESIREYARSILTPYKVPRRIFV 542
Query: 165 ADSLSGKPLTGKIQRRIVAE 184
D L K L GK+ RR V E
Sbjct: 543 VDELP-KSLIGKVLRRQVRE 561
>gi|340628080|ref|YP_004746532.1| putative chain-fatty-acid-CoA ligase FADD13 [Mycobacterium canettii
CIPT 140010059]
gi|340006270|emb|CCC45446.1| putative chain-fatty-acid-CoA ligase FADD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140010059]
Length = 503
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|15610226|ref|NP_217605.1| Probable chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium tuberculosis H37Rv]
gi|15842659|ref|NP_337696.1| substrate--CoA ligase [Mycobacterium tuberculosis CDC1551]
gi|31794268|ref|NP_856761.1| chain-fatty-acid-CoA ligase [Mycobacterium bovis AF2122/97]
gi|121638974|ref|YP_979198.1| chain-fatty-acid-CoA ligase fadD13 [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148662943|ref|YP_001284466.1| fatty-acid--CoA ligase [Mycobacterium tuberculosis H37Ra]
gi|148824281|ref|YP_001289035.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis F11]
gi|167969693|ref|ZP_02551970.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis H37Ra]
gi|224991466|ref|YP_002646155.1| chain-fatty-acid-CoA ligase [Mycobacterium bovis BCG str. Tokyo
172]
gi|253797811|ref|YP_003030812.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis KZN 1435]
gi|254233713|ref|ZP_04927038.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis C]
gi|254552167|ref|ZP_05142614.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289444652|ref|ZP_06434396.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis T46]
gi|289448768|ref|ZP_06438512.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis CPHL_A]
gi|289575800|ref|ZP_06456027.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis K85]
gi|289746898|ref|ZP_06506276.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis 02_1987]
gi|289751764|ref|ZP_06511142.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis T92]
gi|289755206|ref|ZP_06514584.1| substrate-CoA ligase [Mycobacterium tuberculosis EAS054]
gi|289763267|ref|ZP_06522645.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis GM 1503]
gi|294993405|ref|ZP_06799096.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis 210]
gi|297635723|ref|ZP_06953503.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis KZN 4207]
gi|297732722|ref|ZP_06961840.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis KZN R506]
gi|306777398|ref|ZP_07415735.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu001]
gi|306781302|ref|ZP_07419639.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu002]
gi|306785943|ref|ZP_07424265.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu003]
gi|306790297|ref|ZP_07428619.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu004]
gi|306794792|ref|ZP_07433094.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu005]
gi|306799033|ref|ZP_07437335.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu006]
gi|306804877|ref|ZP_07441545.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu008]
gi|306809069|ref|ZP_07445737.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu007]
gi|306969169|ref|ZP_07481830.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu009]
gi|306973514|ref|ZP_07486175.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu010]
gi|307081224|ref|ZP_07490394.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu011]
gi|307085825|ref|ZP_07494938.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu012]
gi|313660054|ref|ZP_07816934.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis KZN V2475]
gi|339633097|ref|YP_004724739.1| chain-fatty-acid-CoA ligase [Mycobacterium africanum GM041182]
gi|375295085|ref|YP_005099352.1| fatty-acid-CoA ligase FadD13 [Mycobacterium tuberculosis KZN 4207]
gi|378772832|ref|YP_005172565.1| putative chain-fatty-acid-CoA ligase [Mycobacterium bovis BCG str.
Mexico]
gi|385992344|ref|YP_005910642.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis CCDC5180]
gi|385995970|ref|YP_005914268.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis CCDC5079]
gi|385999876|ref|YP_005918175.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis CTRI-2]
gi|392387715|ref|YP_005309344.1| fadD13 [Mycobacterium tuberculosis UT205]
gi|392431292|ref|YP_006472336.1| fatty-acid-CoA ligase FadD13 [Mycobacterium tuberculosis KZN 605]
gi|397675015|ref|YP_006516550.1| o-succinylbenzoate--CoA ligase [Mycobacterium tuberculosis H37Rv]
gi|422814162|ref|ZP_16862527.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis CDC1551A]
gi|424803413|ref|ZP_18228844.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis W-148]
gi|424948724|ref|ZP_18364420.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis NCGM2209]
gi|449065180|ref|YP_007432263.1| chain-fatty-acid-CoA ligase [Mycobacterium bovis BCG str. Korea
1168P]
gi|81669315|sp|O53306.1|FAC13_MYCTU RecName: Full=Long-chain-fatty-acid--CoA ligase FadD13; AltName:
Full=Fatty acyl-CoA ligase; Short=FACL; Short=FACL13;
AltName: Full=Fatty acyl-CoA synthetase; Short=ACS;
Short=FACS; AltName: Full=Very-long-chain fatty-acyl-CoA
synthetase; Short=ACSVL
gi|13882977|gb|AAK47510.1| substrate--CoA ligase [Mycobacterium tuberculosis CDC1551]
gi|31619863|emb|CAD96803.1| PROBABLE CHAIN-FATTY-ACID-CoA LIGASE FADD13 (FATTY-ACYL-CoA
SYNTHETASE) [Mycobacterium bovis AF2122/97]
gi|121494622|emb|CAL73103.1| Probable chain-fatty-acid-CoA ligase fadD13 [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124599242|gb|EAY58346.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis C]
gi|148507095|gb|ABQ74904.1| fatty-acid-CoA ligase FadD13 [Mycobacterium tuberculosis H37Ra]
gi|148722808|gb|ABR07433.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis F11]
gi|224774581|dbj|BAH27387.1| putative chain-fatty-acid-CoA ligase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253319314|gb|ACT23917.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis KZN 1435]
gi|289417571|gb|EFD14811.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis T46]
gi|289421726|gb|EFD18927.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis CPHL_A]
gi|289540231|gb|EFD44809.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis K85]
gi|289687426|gb|EFD54914.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis 02_1987]
gi|289692351|gb|EFD59780.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis T92]
gi|289695793|gb|EFD63222.1| substrate-CoA ligase [Mycobacterium tuberculosis EAS054]
gi|289710773|gb|EFD74789.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis GM 1503]
gi|308214286|gb|EFO73685.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu001]
gi|308325940|gb|EFP14791.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu002]
gi|308329463|gb|EFP18314.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu003]
gi|308333308|gb|EFP22159.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu004]
gi|308336963|gb|EFP25814.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu005]
gi|308340777|gb|EFP29628.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu006]
gi|308344646|gb|EFP33497.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu007]
gi|308348594|gb|EFP37445.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu008]
gi|308353319|gb|EFP42170.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu009]
gi|308357153|gb|EFP46004.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu010]
gi|308361105|gb|EFP49956.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu011]
gi|308364677|gb|EFP53528.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis SUMu012]
gi|323718321|gb|EGB27499.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis CDC1551A]
gi|326902689|gb|EGE49622.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis W-148]
gi|328457590|gb|AEB03013.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis KZN 4207]
gi|339295924|gb|AEJ48035.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis CCDC5079]
gi|339299537|gb|AEJ51647.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis CCDC5180]
gi|339332453|emb|CCC28166.1| putative chain-fatty-acid-CoA ligase FADD13 (fatty-acyl-CoA
synthetase) [Mycobacterium africanum GM041182]
gi|341603013|emb|CCC65691.1| probable chain-fatty-acid-CoA ligase fadD13 [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344220923|gb|AEN01554.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis CTRI-2]
gi|356595153|gb|AET20382.1| Putative chain-fatty-acid-CoA ligase [Mycobacterium bovis BCG str.
Mexico]
gi|358233239|dbj|GAA46731.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis NCGM2209]
gi|378546266|emb|CCE38545.1| fadD13 [Mycobacterium tuberculosis UT205]
gi|379029423|dbj|BAL67156.1| chain-fatty-acid-CoA ligase [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
gi|392052701|gb|AFM48259.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis KZN 605]
gi|395139920|gb|AFN51079.1| O-succinylbenzoate-CoA ligase [Mycobacterium tuberculosis H37Rv]
gi|444896635|emb|CCP45898.1| Probable chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium tuberculosis H37Rv]
gi|449033688|gb|AGE69115.1| chain-fatty-acid-CoA ligase [Mycobacterium bovis BCG str. Korea
1168P]
Length = 503
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|374977594|pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 326 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATR 384
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 385 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 444
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 445 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 503
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 504 KTVLRE 509
>gi|125540773|gb|EAY87168.1| hypothetical protein OsI_08569 [Oryza sativa Indica Group]
Length = 569
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR E+ + D + G N+ G++CIR GP + +
Sbjct: 372 LSMCPAFAKEPT--PAKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIR-GPQIMKG 428
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA GW +GD+GY D + + VD VKE K F+VP
Sbjct: 429 YLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFI-------VDRVKELIK--FKGFQVP 478
>gi|115448079|ref|NP_001047819.1| Os02g0697400 [Oryza sativa Japonica Group]
gi|76789647|sp|Q42982.2|4CL2_ORYSJ RecName: Full=Probable 4-coumarate--CoA ligase 2; Short=4CL 2;
Short=Os4CL2; AltName: Full=4-coumaroyl-CoA synthase 2
gi|41052949|dbj|BAD07859.1| 4-coumarate:CoA ligase isoform 2 [Oryza sativa Japonica Group]
gi|41053213|dbj|BAD08175.1| 4-coumarate:CoA ligase isoform 2 [Oryza sativa Japonica Group]
gi|113537350|dbj|BAF09733.1| Os02g0697400 [Oryza sativa Japonica Group]
gi|215740665|dbj|BAG97321.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 569
Score = 50.1 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR E+ + D + G N+ G++CIR GP + +
Sbjct: 372 LSMCPAFAKEPT--PAKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIR-GPQIMKG 428
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA GW +GD+GY D + + VD VKE K F+VP
Sbjct: 429 YLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFI-------VDRVKELIK--FKGFQVP 478
>gi|373457238|ref|ZP_09549005.1| AMP-dependent synthetase and ligase [Caldithrix abyssi DSM 13497]
gi|371718902|gb|EHO40673.1| AMP-dependent synthetase and ligase [Caldithrix abyssi DSM 13497]
Length = 652
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 61 HKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWF 118
HK + GK ++ E+ I DE G + G++C++ E MV NP A + A + GW
Sbjct: 400 HKLGTSGKVLKGMEVKIVDERGNELPTGQRGEICVKGENVMVGYWKNPTATENALRDGWL 459
Query: 119 LSGDLGYFDSQRCL 132
+GDLGY D + L
Sbjct: 460 HTGDLGYLDEEGYL 473
>gi|242062830|ref|XP_002452704.1| hypothetical protein SORBIDRAFT_04g031010 [Sorghum bicolor]
gi|241932535|gb|EES05680.1| hypothetical protein SORBIDRAFT_04g031010 [Sorghum bicolor]
Length = 566
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K S G VR E+ + D + G+ N+ G++CIR GP + +
Sbjct: 366 LSMCPAFAKEPT--PAKPGSCGTVVRNAELKVVDPDTGLSLGRNLPGEICIR-GPQIMKG 422
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA GW +GD+GY D + + VD VKE K F+VP
Sbjct: 423 YLNDPEATARTIDVDGWLHTGDIGYVDDDDEVFI-------VDRVKELIKFK--GFQVP 472
>gi|453078441|ref|ZP_21981172.1| acyl-CoA synthetase [Rhodococcus triatomae BKS 15-14]
gi|452757197|gb|EME15604.1| acyl-CoA synthetase [Rhodococcus triatomae BKS 15-14]
Length = 533
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRC 131
+++ DE G + A G++C+ GP V ++NP+AN AF+ GWF +GDLG DS
Sbjct: 352 VSVQDETGAEVPAGEIGELCV-AGPAVFAGYLDNPKANADAFRDGWFRTGDLGVMDSDGY 410
Query: 132 L 132
L
Sbjct: 411 L 411
>gi|298526561|ref|ZP_07013970.1| substrate-CoA ligase [Mycobacterium tuberculosis 94_M4241A]
gi|298496355|gb|EFI31649.1| substrate-CoA ligase [Mycobacterium tuberculosis 94_M4241A]
Length = 503
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|390944562|ref|YP_006408323.1| acyl-CoA synthetase [Belliella baltica DSM 15883]
gi|390417990|gb|AFL85568.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Belliella
baltica DSM 15883]
Length = 559
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 62/202 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++ C P +G + ++G P+ ++ + D++G + + G++CI+
Sbjct: 358 YGLTETSPVATCN-----PIDGTERIGTIGVPLPHTDIKVIDDDGNELEIGEKGELCIK- 411
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQR------------CLNMWKISPTEV 142
GP V + N P+ + WF +GD+ D+ ++ + + P EV
Sbjct: 412 GPQVMKRYWNRPDETEKVMIGDWFKTGDIAVIDNDGFAKIVDRKKEMILVSGFNVYPNEV 471
Query: 143 ----------------------------------------DAVKEFCKRNVASFKVPKKV 162
D + + K N+ ++KVP++V
Sbjct: 472 ENVIASHPKVLEVGIIGMPDEKSTEKVVAYVVAKDKSITEDEIIAYTKENLTNYKVPREV 531
Query: 163 FIADSLSGKPLTGKIQRRIVAE 184
+ D L K GKI RRI+ E
Sbjct: 532 YFTDELP-KSNVGKILRRIIKE 552
>gi|392378996|ref|YP_004986155.1| putative AMP-dependent synthetase and ligase [Azospirillum
brasilense Sp245]
gi|356881363|emb|CCD02348.1| putative AMP-dependent synthetase and ligase [Azospirillum
brasilense Sp245]
Length = 504
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 58/178 (32%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
K S G+ + E+ I D+ G A G++C+R GP V + +PE +F W
Sbjct: 316 EKIGSTGRALAHVEIDIRDDAGTSLPAGDIGEICLR-GPKVTKGYWKDPEKTARSFYGDW 374
Query: 118 FLSGDLGYFDSQRCLNM------------------------------------------W 135
F +GD+GY D+ L + W
Sbjct: 375 FRTGDVGYLDADGFLFLTDRKKDMIISGGENIASSEIERVVFLLPQVVEVAVIAVPDERW 434
Query: 136 KISPTEVDAVKE-----------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
P V +KE C+R++A FK+PK++ + ++L P +GK+ +R++
Sbjct: 435 GEVPAAVVVLKEGESLDAETLEQHCRRHLAGFKIPKRLLLREALPRNP-SGKVLKRVL 491
>gi|308174750|ref|YP_003921455.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens DSM
7]
gi|384165535|ref|YP_005546914.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens LL3]
gi|307607614|emb|CBI43985.1| O-succinylbenzoic acid-CoA ligase [Bacillus amyloliquefaciens DSM
7]
gi|328913090|gb|AEB64686.1| O-succinylbenzoic acid-CoA ligase [Bacillus amyloliquefaciens LL3]
Length = 487
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIRIEKDGNRCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + EAN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDEANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLVLTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFAVDELP-RNASNKLMRHRLNELRK 483
>gi|358374084|dbj|GAA90678.1| AMP-binding enzyme [Aspergillus kawachii IFO 4308]
Length = 549
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 49 CTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVD-QKANVNGKMCIREGPMVQ--RIN 104
C + + + + SVG+ V E + D+NG D + V G++C+R GP V N
Sbjct: 337 CCIATMFRWDEGDETGSVGRLVPNMEAKLVDDNGTDISEYGVRGELCVR-GPAVTPGYFN 395
Query: 105 NPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKV 158
NP AN +F + GWF +GD+ Y D W I VD KE K V F+V
Sbjct: 396 NPAANAESFDEQGWFHTGDIAYCDG--ATQKWYI----VDRKKELIK--VRGFQV 442
>gi|384160593|ref|YP_005542666.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
TA208]
gi|384169680|ref|YP_005551058.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens XH7]
gi|328554681|gb|AEB25173.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
TA208]
gi|341828959|gb|AEK90210.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens XH7]
Length = 487
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMEKLGSAGKPLFSCEIRIEKDGNRCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + EAN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDEANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLILTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFAVDELP-RNASNKLMRHRLNELRK 483
>gi|170749415|ref|YP_001755675.1| acyl-CoA synthetase [Methylobacterium radiotolerans JCM 2831]
gi|170655937|gb|ACB24992.1| AMP-dependent synthetase and ligase [Methylobacterium radiotolerans
JCM 2831]
Length = 545
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 59/200 (29%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + ++GP K + G + ++ I D G + G++C+ GP
Sbjct: 329 VTGNITVLPPRLHAAEDGPDVKVGTCGFERTGMQVQIQDTVGRECSPGATGEICVC-GPA 387
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVD-- 143
V +NPEAN AF+ GWF +GDLG+ D++ R +M+ + P E++
Sbjct: 388 VFAGYYDNPEANAAAFRDGWFRTGDLGHLDAEGFLFITGRASDMYISGGSNVYPREIEEK 447
Query: 144 ----------------------------------AVKE-----FCKRNVASFKVPKKVFI 164
AV+E + +VA +K+P++VF
Sbjct: 448 LLTHPAITEAAILGVPDPAWGEVGVAVCVARPGTAVEEGELIAWLSADVARYKLPRRVFF 507
Query: 165 ADSLSGKPLTGKIQRRIVAE 184
DSL K GK+ +R + E
Sbjct: 508 WDSLP-KSGYGKVTKRAIRE 526
>gi|312109835|ref|YP_003988151.1| O-succinylbenzoate-CoA ligase [Geobacillus sp. Y4.1MC1]
gi|423718884|ref|ZP_17693066.1| O-succinylbenzoate-CoA ligase [Geobacillus thermoglucosidans
TNO-09.020]
gi|311214936|gb|ADP73540.1| O-succinylbenzoate-CoA ligase [Geobacillus sp. Y4.1MC1]
gi|383367787|gb|EID45062.1| O-succinylbenzoate-CoA ligase [Geobacillus thermoglucosidans
TNO-09.020]
Length = 496
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 62/210 (29%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNG 90
+P +G TS+ + L P+ K S GKP+ ++ I E+G + G
Sbjct: 281 IPVYQTYGMTETSS----QIVTLAPEYSLTKLGSAGKPLFPAQLRIEKEDGQAARPYEPG 336
Query: 91 KMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ 136
++ ++ GP V + + P+A + A + GWF +GD+GY D L +
Sbjct: 337 EIVVK-GPNVTKGYLRRPDATEEAIRDGWFYTGDIGYIDEDGFLYVLDRRSDLIISGGEN 395
Query: 137 ISPTEVDAV-----------------------------------------KEFCKRNVAS 155
+ P E++AV K+FC+ +A
Sbjct: 396 VYPAEIEAVLLSHEAVEEAGVTGIDDETWGQVPCAFVKLKSGYSATAEQLKQFCQERLAK 455
Query: 156 FKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
+K+PK+++ + L + + K+ RR + +L
Sbjct: 456 YKIPKQIYFVEQLP-RNASQKLLRRQLKQL 484
>gi|256371814|ref|YP_003109638.1| AMP-dependent synthetase and ligase [Acidimicrobium ferrooxidans
DSM 10331]
gi|256008398|gb|ACU53965.1| AMP-dependent synthetase and ligase [Acidimicrobium ferrooxidans
DSM 10331]
Length = 539
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 53 VLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEAN 109
VLLP+ A +VG V ++AI ++ G A G++ R GP M +++ +A
Sbjct: 338 VLLPEQQLSHAGAVGGAVPNVQVAIVNDAGELVPAYTRGEIVYR-GPHAMQGYLHDEQAT 396
Query: 110 KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIAD 166
AF GWF SGD+GY D+ L W D +K NVAS +V + ++ A+
Sbjct: 397 NEAFAGGWFHSGDVGYLDADGVL--W-FEDRRKDVIKT-GGENVASLEVERALYGAE 449
>gi|453364537|dbj|GAC79814.1| putative acyl-CoA synthetase [Gordonia malaquae NBRC 108250]
Length = 505
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 57/185 (30%)
Query: 54 LLPKNGPHKASSVGKP--VRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANK 110
L P KA S+G+ ++ + D GVDQ A G++ +R + MV ++NPEA
Sbjct: 316 LYPHEQTTKAGSIGRGGMYGVDLRVVDAGGVDQAAGGTGEIWLRADSRMVGYLDNPEATA 375
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------------------------------ 134
AF WF +GD+ D L +
Sbjct: 376 AAFAGPWFRTGDVARIDDDGYLYIVDRLKDVIIVGGENVHSQEVEEVLRGHPRVADVAVI 435
Query: 135 ------WK-------ISPTEVDA----VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
W +S VD V++F +A +K+P++V + D+L P +GKI
Sbjct: 436 GRPHQEWGETVVAACVSTDGVDVTVDEVRDFLADRLARYKIPREVVMVDALPRNP-SGKI 494
Query: 178 QRRIV 182
+ ++
Sbjct: 495 VKHVL 499
>gi|336234188|ref|YP_004586804.1| 2-succinylbenzoate--CoA ligase [Geobacillus thermoglucosidasius
C56-YS93]
gi|335361043|gb|AEH46723.1| 2-succinylbenzoate--CoA ligase [Geobacillus thermoglucosidasius
C56-YS93]
Length = 496
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 62/210 (29%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNG 90
+P +G TS+ + L P+ K S GKP+ ++ I E+G + G
Sbjct: 281 IPVYQTYGMTETSS----QIVTLAPEYSLTKLGSAGKPLFPAQLRIEKEDGQAARPYEPG 336
Query: 91 KMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ 136
++ ++ GP V + + P+A + A + GWF +GD+GY D L +
Sbjct: 337 EIVVK-GPNVTKGYLRRPDATEEAIRDGWFYTGDIGYIDEDGFLYVLDRRSDLIISGGEN 395
Query: 137 ISPTEVDAV-----------------------------------------KEFCKRNVAS 155
+ P E++AV K+FC+ +A
Sbjct: 396 VYPAEIEAVLLSHEAVEEAGVTGIDDETWGQVPCAFVKLKSGYSATAEQLKQFCQERLAK 455
Query: 156 FKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
+K+PK+++ + L + + K+ RR + +L
Sbjct: 456 YKIPKQIYFVEQLP-RNASQKLLRRQLKQL 484
>gi|433628230|ref|YP_007261859.1| Putative chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140060008]
gi|432155836|emb|CCK53087.1| Putative chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140060008]
Length = 503
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRERG-EGEVVIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|406666157|ref|ZP_11073926.1| Long-chain-fatty-acid--CoA ligase [Bacillus isronensis B3W22]
gi|405386014|gb|EKB45444.1| Long-chain-fatty-acid--CoA ligase [Bacillus isronensis B3W22]
Length = 495
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 54 LLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
LL K SVGKP+ R ++ + D NG G++C+R GP V + + PE
Sbjct: 307 LLDDGALFKIGSVGKPLARTDIQLRDANGEIVPLGEVGEICVR-GPQVMKGYLRAPEETA 365
Query: 111 TAFQFGWFLSGDLGYFDSQRCL 132
+ Q GW +GDLG FD + L
Sbjct: 366 MSIQDGWLYTGDLGRFDEEGYL 387
>gi|347752794|ref|YP_004860359.1| O-succinylbenzoate-CoA ligase [Bacillus coagulans 36D1]
gi|347585312|gb|AEP01579.1| O-succinylbenzoate-CoA ligase [Bacillus coagulans 36D1]
Length = 484
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 65/191 (34%)
Query: 53 VLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV-----NGKMCIREGPMVQ--RINN 105
L P++ K S GKP+ P + + V +G++ ++ GP V +N
Sbjct: 298 TLAPEDSLRKIGSAGKPL-----FPAQIRIVSDGKVCGPFEHGEIAVK-GPNVTIGYLNR 351
Query: 106 PEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVD---------- 143
P+AN+ +F+ GWF +GD+GY D + L + I P E++
Sbjct: 352 PDANQKSFRDGWFFTGDIGYLDDEGFLYVLDRRSDLIISGGENIYPAEIEEVLLAHPDIL 411
Query: 144 ------------------------AVKE-----FCKRNVASFKVPKKVFIADSLSGKPLT 174
AV+E FC+ +A FK+PKKV+ +L + +
Sbjct: 412 EAGVIGVEDEKWGQVPAAFIVTKRAVQERELQAFCETRLAKFKIPKKVYAVPALP-RNAS 470
Query: 175 GKIQRRIVAEL 185
K+ RR + EL
Sbjct: 471 NKLVRRKLLEL 481
>gi|433643282|ref|YP_007289041.1| Putative chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140070008]
gi|432159830|emb|CCK57141.1| Putative chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140070008]
Length = 503
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVMIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|398829314|ref|ZP_10587513.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Phyllobacterium sp. YR531]
gi|398217089|gb|EJN03624.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Phyllobacterium sp. YR531]
Length = 535
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
+++I +E G + G++C+ GP V NNPEAN+ AF+ GWF +GDLG+ D++
Sbjct: 361 QISIQEETGKELAPGETGEICVI-GPAVFAGYYNNPEANEKAFRNGWFRTGDLGHLDNEG 419
Query: 131 CL 132
L
Sbjct: 420 FL 421
>gi|365881117|ref|ZP_09420446.1| Fatty acid CoA ligase [Bradyrhizobium sp. ORS 375]
gi|365290736|emb|CCD92977.1| Fatty acid CoA ligase [Bradyrhizobium sp. ORS 375]
Length = 530
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V ++GP + S G + +++I D+ G + K G++C+ GP
Sbjct: 318 VTGNITVLPAAAHEEEDGPEARIGSCGYERTGMQVSIQDDGGRELKPGETGEICVI-GPA 376
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
V +NP+AN AF+ GWF +GDLG+ D++
Sbjct: 377 VFAGYYDNPDANAKAFRDGWFRTGDLGHMDAE 408
>gi|357137128|ref|XP_003570153.1| PREDICTED: probable 4-coumarate--CoA ligase 2-like [Brachypodium
distachyon]
Length = 574
Score = 49.7 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR ++ + D + G N+ G++CIR GP + +
Sbjct: 374 LSMCPAFAREPT--PAKSGSCGTVVRNAQLKVVDPDTGFSLARNLPGEICIR-GPQIMKG 430
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA GW +GD+GY D + + VD VKE K F+VP
Sbjct: 431 YLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFI-------VDRVKELIK--FKGFQVP 480
>gi|154283867|ref|XP_001542729.1| hypothetical protein HCAG_02900 [Ajellomyces capsulatus NAm1]
gi|150410909|gb|EDN06297.1| hypothetical protein HCAG_02900 [Ajellomyces capsulatus NAm1]
Length = 528
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKA-NVNGKMCIREGPM 99
+T + T+F P+N SVG+PV EM + ++ G + A V G++C+R GP
Sbjct: 311 MTETTCIATMFCY-PEN--DDTGSVGRPVASLEMKLINDEGKNISAYGVRGEICVR-GPT 366
Query: 100 VQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFK 157
V + NP AN +F WF +GD+GY D + W I +D KE K V F+
Sbjct: 367 VIKGYFENPTANAQSFDGEWFKTGDIGYCDEK--TKKWYI----IDRKKELIK--VRGFQ 418
Query: 158 V 158
V
Sbjct: 419 V 419
>gi|288941141|ref|YP_003443381.1| AMP-dependent synthetase and ligase [Allochromatium vinosum DSM
180]
gi|288896513|gb|ADC62349.1| AMP-dependent synthetase and ligase [Allochromatium vinosum DSM
180]
Length = 519
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P GP K SVG + EM I D +G +G++C+R GP V R N PE + +
Sbjct: 325 PPAGPRKPCSVGPALPGVEMRIADPDGNWLPDGEHGEVCVR-GPSVMRGYWNLPEETRAS 383
Query: 113 FQFGWFLSGDLGYFDSQ 129
F WF +GDLG+ DS
Sbjct: 384 FHGDWFRTGDLGWRDSD 400
>gi|453363209|dbj|GAC81013.1| putative fatty-acid--CoA ligase [Gordonia malaquae NBRC 108250]
Length = 509
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I +L P+ + +S G+P E I D NG D +G++C R
Sbjct: 308 YNCFGQSEIGPLAT-ILRPEEHADRPASCGRPAFFVETRIVDGNGDDVPIGESGEICYRS 366
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ N PEA AF GWF SGDL D Q + T VD +K+
Sbjct: 367 PQLCSGYWNKPEATAEAFVDGWFHSGDLVTSDDQGYI-------TVVDRIKDVINTGGVL 419
Query: 153 VASFKVPKKVFI 164
VAS +V V++
Sbjct: 420 VASREVEDAVYL 431
>gi|420146086|ref|ZP_14653524.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
gi|398402210|gb|EJN55579.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
Length = 509
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP 98
G +T A S CT+ P + P K S GK +++I + + NV G++ I+
Sbjct: 307 GYGMTEAASQCTIN---PFDAP-KIGSAGKAFGTDLSILVDGEFTTEPNVLGEIVIKGDH 362
Query: 99 MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
++ + +P N +F+ GWFL+GDLGY D L
Sbjct: 363 VITQYMDP--NSDSFKDGWFLTGDLGYLDEDGYL 394
>gi|387316213|gb|AFJ73461.1| 4-coumarate: coenzyme A ligase, partial [Araucaria excelsa]
Length = 442
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 60 PHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR--INNPEAN-KTAFQ 114
P K+ S G VR +M I D + G N +G++CIR GP + + +N+PEA +T +
Sbjct: 327 PVKSGSCGTVVRNAQMKIVDPDTGESLPCNKHGEICIR-GPQIMKGYLNDPEATARTIDK 385
Query: 115 FGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
GW +GD+GY D + + VD VKE K F+VP
Sbjct: 386 DGWLHTGDIGYIDEDDEVFI-------VDRVKELIKYK--GFQVP 421
>gi|443632426|ref|ZP_21116606.1| 2-succinylbenzoate--CoA ligase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443348541|gb|ELS62598.1| 2-succinylbenzoate--CoA ligase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 486
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 76/194 (39%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G + +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQACEPFEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+ +FQ GW +GDLGY DS L + I P EV++V
Sbjct: 350 RESANEASFQNGWLKTGDLGYLDSDGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
+CK +A +K+P K FI DSL +
Sbjct: 410 AEAGVSGAEDKKWGKVPHAYLVLHKPVSAEELTAYCKERLAKYKIPAKFFILDSLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLLRNQLKDARK 482
>gi|389690111|ref|ZP_10179128.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Microvirga
sp. WSM3557]
gi|388589629|gb|EIM29917.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Microvirga
sp. WSM3557]
Length = 545
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
+++I DE G + G++C+ GP V +NPEAN AF+ GWF +GDLG+ D +
Sbjct: 363 QISIQDETGRELATGETGEICVC-GPAVFAGYYDNPEANAKAFRDGWFRTGDLGHMDEEG 421
Query: 131 CL 132
L
Sbjct: 422 YL 423
>gi|365901582|ref|ZP_09439417.1| Fatty acid CoA ligase [Bradyrhizobium sp. STM 3843]
gi|365417670|emb|CCE11959.1| Fatty acid CoA ligase [Bradyrhizobium sp. STM 3843]
Length = 544
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
++ I D+ G + K G++C+ GP V +NPEAN AF+ GWF +GDLG+ D+Q
Sbjct: 364 QVCIQDDAGRELKPGETGEICVI-GPAVFAGYYDNPEANAKAFRNGWFRTGDLGHMDAQ 421
>gi|333394259|ref|ZP_08476078.1| acyl-CoA synthetase family protein [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length = 509
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP 98
G +T A S CT+ P + P K S GK +++I + + NV G++ I+
Sbjct: 307 GYGMTEAASQCTIN---PFDAP-KIGSAGKAFGTDLSILVDGEFTTEPNVLGEIVIKGDH 362
Query: 99 MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
++ + +P N +F+ GWFL+GDLGY D L
Sbjct: 363 VITQYMDP--NSDSFKDGWFLTGDLGYLDEDGYL 394
>gi|218779882|ref|YP_002431200.1| AMP-dependent synthetase and ligase [Desulfatibacillum alkenivorans
AK-01]
gi|218761266|gb|ACL03732.1| Long-chain-fatty-acid CoA ligase (AMP-forming) [Desulfatibacillum
alkenivorans AK-01]
Length = 574
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 77/209 (36%), Gaps = 69/209 (33%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPD----ENGVDQKANVNGKM 92
FG +A CT P G K +VG P+ ++ I D EN + G++
Sbjct: 353 FGATENTAFGTCT-----PWKGKVKLGTVGVPLPNTDIKIVDMVTGEN--EMPPGEPGEI 405
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKIS 138
CI+ GP V + N PE A + GWF GD+G D + L++ + I
Sbjct: 406 CIK-GPQVMKGYYNRPEETAKALKDGWFHMGDVGVMDEEGYLSIVDRKKDMIIASGYNIY 464
Query: 139 PTEVDA-----------------------------------------VKEFCKRNVASFK 157
P E+D V +CK +A++K
Sbjct: 465 PAEIDEILLLHPEIAEACTIGIPDDYRGETVKAWVVCNPGVELSEEQVMSYCKEKLAAYK 524
Query: 158 VPKKVFIADSLSGKPLTGKIQRRIVAELR 186
VPK V D L K GK+ RR V +
Sbjct: 525 VPKSVKFVDELP-KSAIGKLMRREVRRME 552
>gi|339326280|ref|YP_004685973.1| long-chain-fatty-acid--CoA ligase LcfB [Cupriavidus necator N-1]
gi|338166437|gb|AEI77492.1| long-chain-fatty-acid--CoA ligase LcfB [Cupriavidus necator N-1]
Length = 514
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 77/213 (36%), Gaps = 68/213 (31%)
Query: 34 PRLEFGCFVTSAISVC----------TVFVLLPKNGPHKASSVGKPVRREMA-IPDENGV 82
PR ++ +++C TVFV K ++GKPV + I D G
Sbjct: 296 PRPLLEAYLAKGVTICFGFGMTETGPTVFVCDEDTARRKIGTIGKPVGSMLTRIVDAVGA 355
Query: 83 DQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFLSGDLGYFDS-------QRCLN 133
D G++ I+ GP V N PEA A + GW SGD+ Y D R +
Sbjct: 356 DVGPGERGELLIK-GPGVTPGYWNLPEATAAAIRDGWLHSGDIAYRDEDGDYYIVDRAKD 414
Query: 134 MW-----KISPTEV-----------------------------------------DAVKE 147
M+ + P EV DAV
Sbjct: 415 MFISGGENVYPAEVESVLFQLPGVAEAAVIGAPDARWGEVGMALVVLRPGAALEADAVIA 474
Query: 148 FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
CK +A +KVP+ V D+L P +GK+++
Sbjct: 475 HCKAQLAGYKVPRHVRFLDALPRTP-SGKVEKH 506
>gi|327355674|gb|EGE84531.1| AMP-binding enzyme [Ajellomyces dermatitidis ATCC 18188]
Length = 550
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKA-NVNGKMCIREGPM 99
+T V T F P+N SVG+PV EM + D++G + A V G++C+R GP
Sbjct: 333 MTETTCVATRFAY-PEN--DDTGSVGRPVASLEMRLIDDDGKNISAYGVRGEICVR-GPT 388
Query: 100 VQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFK 157
+ + NP AN +F WF +GD+GY + + W I VD KE K V F+
Sbjct: 389 IIKGYFENPGANAESFDGDWFKTGDIGYCNEK--TKKWYI----VDRKKELIK--VRGFQ 440
Query: 158 V 158
V
Sbjct: 441 V 441
>gi|336393634|ref|ZP_08575033.1| acyl-CoA synthetase family protein [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 509
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP 98
G +T A S CT+ P + P K S GK +++I +ANV G++ I+
Sbjct: 307 GYGMTEAASQCTIN---PFDAP-KIGSAGKAFGTDLSILVGGEFTTEANVLGEIVIKGDH 362
Query: 99 MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
++ + +P N +F+ GWFL+GDLGY D L
Sbjct: 363 VITQYMDP--NPDSFKDGWFLTGDLGYLDEDGYL 394
>gi|326469981|gb|EGD93990.1| 2-succinylbenzoate-CoA ligase [Trichophyton tonsurans CBS 112818]
gi|326484112|gb|EGE08122.1| peroxisomal-coenzyme A synthetase [Trichophyton equinum CBS 127.97]
Length = 514
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
R + P LE +T A T L P G SVG E+ I D+NG +
Sbjct: 296 RAFNAPVLE-AYAMTEAAHQMTSNPLPP--GKRMPGSVGIGQGVEVRILDDNGKEVPQGS 352
Query: 89 NGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGDLGYFDS----------QRCLNMW- 135
G++C+R E +NNP ANK++F + G+F +GD G D + +N
Sbjct: 353 EGEICVRGENVTKGYLNNPAANKSSFTKDGFFRTGDQGKKDQDGYVFITGRIKELINKGG 412
Query: 136 -KISPTEVDAV-----------------------------------------KEFCKRNV 153
KISP E+D V K V
Sbjct: 413 EKISPIELDNVIAQNPHVAEAVSFAIPDNMYGENIGVAVVLKKKGSRSEDQLKSEIAPKV 472
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
A FKVP++++I + K TGKIQRR VAE
Sbjct: 473 AKFKVPQRIWILHEIP-KTATGKIQRRKVAE 502
>gi|377571189|ref|ZP_09800312.1| putative fatty-acid--CoA ligase [Gordonia terrae NBRC 100016]
gi|377531617|dbj|GAB45477.1| putative fatty-acid--CoA ligase [Gordonia terrae NBRC 100016]
Length = 534
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 56/183 (30%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPM-VQRINNPEANK 110
VL P + + S G+P + E I D +G G++ R + V +N PE
Sbjct: 341 VLAPDDQATRGGSAGRPALNVETRIVDSDGGVVSTGSVGEIVHRSPQVTVGYLNLPEKTA 400
Query: 111 TAFQFGWFLSGDLGYFDS-------QRCLNMWK-----ISPTEVDAVK------------ 146
+F+ GWF SGDLGYFD R +M K +S EV+ V
Sbjct: 401 ESFRGGWFHSGDLGYFDDDGYLWVVDRQKDMIKTGGENVSSREVEEVLFSHPAVHEAAVI 460
Query: 147 -----------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
++C+ +A +K+PK V A+SL P +GKI
Sbjct: 461 GVPHPHWVEAVAAVVIPAAEHTVDPAEIIQYCRDRLAPYKIPKYVVAAESLPKNP-SGKI 519
Query: 178 QRR 180
+R
Sbjct: 520 LKR 522
>gi|239626187|ref|ZP_04669218.1| acyl-CoA ligase [Clostridiales bacterium 1_7_47_FAA]
gi|239520417|gb|EEQ60283.1| acyl-CoA ligase [Clostridiales bacterium 1_7_47FAA]
Length = 573
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 58/172 (33%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAF---QFGWFLSGDLGYFDSQ 129
E + DENG + G++ R GP+V R + TA Q GW +GD+GYFD +
Sbjct: 393 EYKVIDENGEELPLGGCGQLLCR-GPIVTRGYYRDGEATALAVDQEGWLKTGDVGYFDEK 451
Query: 130 -------RCLNMWKI-----SPTEVD---------------------------------- 143
RC +M+KI SP +D
Sbjct: 452 GYLKFLGRCNDMYKINGENVSPQYLDKIISKCEHVVTVETVGVPDEKLGYIGAAFVDADN 511
Query: 144 -------AVKEFCKRNVASFKVPKKVFIADSLSG-KPLTGKIQRRIVAELRK 187
++ ++CK N+A ++VP+ F DS + TGK+Q+ + E+ +
Sbjct: 512 PDQETKESIVDYCKANLAPYQVPRYFFFTDSCTWPHTTTGKVQKFKLREIAR 563
>gi|297203648|ref|ZP_06921045.1| dicarboxylate-CoA ligase PimA [Streptomyces sviceus ATCC 29083]
gi|197717627|gb|EDY61661.1| dicarboxylate-CoA ligase PimA [Streptomyces sviceus ATCC 29083]
Length = 528
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 55 LPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQ 114
LP+ G + SVG+P + + D +G A V G++ + +G V R + +++A
Sbjct: 342 LPQRGALRQGSVGRPTGVAVRVVDRSGRSCPAGVEGEVWV-QGATVARGYLADGDESART 400
Query: 115 F--GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVKEFCK--RNVASFKV 158
F GW +GDLG D L++ KISP V+ + C A F V
Sbjct: 401 FVDGWLRTGDLGALDEDGYLSLTGRIKNLINRGGEKISPEHVEDILAGCPGVAEAAVFAV 460
Query: 159 PKKVF 163
P V+
Sbjct: 461 PDAVY 465
>gi|425856886|gb|AFX98059.1| 4-coumarate:CoA ligase [Cunninghamia lanceolata]
Length = 565
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR +M I D E G N G++CIR GP + +
Sbjct: 364 LSMCLGFAKEP--FPTKSGSCGTVVRNAQMKIIDPETGESLPYNKPGEICIR-GPQIMKG 420
Query: 103 -INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA +T + GW +GD+GY D + + VD VKE K F+VP
Sbjct: 421 YLNDPEATARTIDKDGWLHTGDIGYIDEGEEVFI-------VDRVKELIKYK--GFQVP 470
>gi|339000097|ref|ZP_08638719.1| acyl-CoA synthetase [Halomonas sp. TD01]
gi|338762972|gb|EGP17982.1| acyl-CoA synthetase [Halomonas sp. TD01]
Length = 518
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE 96
+ C+ S I+ VL P+ + +S G+P+ E I D D +G++ I
Sbjct: 315 YNCYGQSEIAPLAT-VLRPEEHAERPASAGRPILTVETRIVDLEMNDVAPGEHGEI-IHR 372
Query: 97 GP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN-- 152
P M + PE +FQ GWF SGD+GYFD L + VD +K+
Sbjct: 373 SPQLMTGYWDKPEMTYESFQGGWFHSGDVGYFDEAGYLYV-------VDRIKDVINTGGV 425
Query: 153 -VASFKVPKKVFIADSLSGKPLTG 175
VAS +V + +F ++S + G
Sbjct: 426 LVASREVEEALFKHSAISEVAVVG 449
>gi|327301703|ref|XP_003235544.1| 2-succinylbenzoate-CoA ligase [Trichophyton rubrum CBS 118892]
gi|326462896|gb|EGD88349.1| 2-succinylbenzoate-CoA ligase [Trichophyton rubrum CBS 118892]
Length = 514
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 56/175 (32%)
Query: 65 SVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGD 122
SVG E+ I D+NG + G++C+R E +NNP ANK++F + G+F +GD
Sbjct: 329 SVGIGQGVEIRILDDNGKEVPQGSEGEICVRGENVTKGYLNNPAANKSSFTKDGFFRTGD 388
Query: 123 LGYFDS----------QRCLNMW--KISPTEVDAV------------------------- 145
G D + +N KISP E+D V
Sbjct: 389 QGKKDQDGYVFITGRIKELINKGGEKISPIELDNVIAQNPHVAEAVSFAIPDNMYGENIG 448
Query: 146 ----------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K VA FKVP++++I + K TGKIQRR VAE
Sbjct: 449 VAVVLKKKGSISEDQLKSEIAPKVAKFKVPQRIWILHEIP-KTATGKIQRRKVAE 502
>gi|384103146|ref|ZP_10004123.1| acyl-CoA synthetase [Rhodococcus imtechensis RKJ300]
gi|383838987|gb|EID78344.1| acyl-CoA synthetase [Rhodococcus imtechensis RKJ300]
Length = 524
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 68/184 (36%), Gaps = 56/184 (30%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P++ S GKP + E I D+ + A G++ R V + PE
Sbjct: 332 LGPEDQETHGGSAGKPALNVETRIVDDRDLPLPAGEVGEIVHRSPHATVGYLGQPEKTAE 391
Query: 112 AFQFGWFLSGDLGYFDSQRCL-------NMWKISPT------------EVDAVK------ 146
AF GWF SGDLGY D L +M K E+D V
Sbjct: 392 AFAGGWFHSGDLGYLDEDGYLWVVDRKKDMIKTGGENVATREVEETLYELDGVGETAVFA 451
Query: 147 ----------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E C+ +A +KVPK V +ADSL P +GKI
Sbjct: 452 VPHPRWIEAVAAVVVPAAGVELDEKDVVEHCRGRLAGYKVPKYVIVADSLPKNP-SGKIL 510
Query: 179 RRIV 182
+R++
Sbjct: 511 KRVL 514
>gi|333371087|ref|ZP_08463049.1| long-chain-fatty-acid-CoA ligase [Desmospora sp. 8437]
gi|332976531|gb|EGK13372.1| long-chain-fatty-acid-CoA ligase [Desmospora sp. 8437]
Length = 506
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 79/205 (38%), Gaps = 59/205 (28%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I+ VL P++ + S GKPV E+ + DE D K G++ R
Sbjct: 302 YNCFGQSEIAPLAT-VLRPEDHEQRPDSAGKPVLFVELRVVDEEMEDVKPGQMGEIIYR- 359
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM-------------------- 134
P + R PE + AF GWF SGDL D + + +
Sbjct: 360 SPQLCRGYWEQPEETEAAFMGGWFHSGDLARIDEEGYIYIVDRKKDVINTGGVLVASREV 419
Query: 135 ----------------------WKISPTEVDAVKE-----------FCKRNVASFKVPKK 161
W + T V +KE + K+++ASFKVPK
Sbjct: 420 EEVIYAHPEVKEVAVISTPDPKWMEAVTAVVVLKEGAVVTESELIQYAKQHLASFKVPKI 479
Query: 162 VFIADSLSGKPLTGKIQRRIVAELR 186
+ A L + +GKI +R + E R
Sbjct: 480 LRFATDLP-RNASGKILKRKLREER 503
>gi|310796871|gb|EFQ32332.1| AMP-binding enzyme [Glomerella graminicola M1.001]
Length = 517
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 56/178 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFL 119
K +VG ++ I DE G + G++CIR E +NN AN +++ + G+F
Sbjct: 329 KPGTVGLGQGVDVRILDEAGNELAQGQEGEICIRGENVTKGYLNNESANASSYTKSGFFR 388
Query: 120 SGDLGYFDSQRCLNMW------------KISPTEVDAV---------------------- 145
+GD G D + + KISP E+D V
Sbjct: 389 TGDQGKKDEDGYIVITGRIKELINKGGEKISPIELDNVLTRNPAVSEAVSFAIPDDMYGQ 448
Query: 146 -------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K++ +A FKVPKK++ +++ K TGKIQRRIVAE
Sbjct: 449 DIGVAVVLKPGQQLKAEDLKKWVSEKLAKFKVPKKIYFTENMP-KTATGKIQRRIVAE 505
>gi|423606283|ref|ZP_17582176.1| O-succinylbenzoate-CoA ligase [Bacillus cereus VD102]
gi|401241839|gb|EJR48217.1| O-succinylbenzoate-CoA ligase [Bacillus cereus VD102]
Length = 496
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 23 FLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENG 81
FLF +G FG TS TVF+L ++ K S+GKPV E + DEN
Sbjct: 289 FLFGQG---------FGMTETSP----TVFMLSEEDARCKVGSIGKPVLFCEYELIDENK 335
Query: 82 VDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWFLSGDLGYFDS 128
+ G++ IR GP M + N P+A K A Q GW +GDL D
Sbjct: 336 NKVEVGEVGELLIR-GPNVMKEYWNRPDATKEAIQDGWLYTGDLARVDE 383
>gi|424859349|ref|ZP_18283363.1| dicarboxylate-CoA ligase PimA [Rhodococcus opacus PD630]
gi|356661858|gb|EHI42169.1| dicarboxylate-CoA ligase PimA [Rhodococcus opacus PD630]
Length = 524
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 68/184 (36%), Gaps = 56/184 (30%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P++ S GKP + E I D+ + A G++ R V + PE
Sbjct: 332 LGPEDQETHGGSAGKPALNVETRIVDDRDLPLPAGEVGEIVHRSPHATVGYLGQPEKTAE 391
Query: 112 AFQFGWFLSGDLGYFDSQRCL-------NMWKISPT------------EVDAVKE----- 147
AF GWF SGDLGY D L +M K E+D V E
Sbjct: 392 AFAGGWFHSGDLGYLDEDGYLWVVDRKKDMIKTGGENVATREVEETLYELDGVGEAAVFA 451
Query: 148 -----------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
C+ +A +KVPK V +ADSL P +GKI
Sbjct: 452 VPHPRWIEAVAAVVVPAAGVELDEKDVVEHCRGRLAGYKVPKYVIVADSLPKNP-SGKIL 510
Query: 179 RRIV 182
+R++
Sbjct: 511 KRVL 514
>gi|347549069|ref|YP_004855397.1| putative O-succinylbenzoic acid-CoA ligase [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346982140|emb|CBW86134.1| Putative O-succinylbenzoic acid-CoA ligase [Listeria ivanovii
subsp. ivanovii PAM 55]
Length = 466
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 64/191 (33%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RIN 104
+ + L PK K S GK + P E K +G++ ++ GP + ++
Sbjct: 286 TASQIVTLSPKEALTKIGSSGKAL-----FPAE----VKIAADGEILLK-GPSITPGYLH 335
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
N EA K AF GWF +GD+GY D L + + I PTE++ V
Sbjct: 336 NEEATKKAFSDGWFKTGDIGYLDEAGFLFVLERRSDLIISGGENIYPTEIEQVISSYESV 395
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
+ C+ N+AS+K+PK+ + SL K
Sbjct: 396 QEVAVVGKADLKWGSVPVAYIVASDGFNEADLRAICQTNLASYKIPKQFILVASLP-KTA 454
Query: 174 TGKIQRRIVAE 184
+GKI+R + E
Sbjct: 455 SGKIKRNQLKE 465
>gi|307726756|ref|YP_003909969.1| AMP-dependent synthetase and ligase [Burkholderia sp. CCGE1003]
gi|307587281|gb|ADN60678.1| AMP-dependent synthetase and ligase [Burkholderia sp. CCGE1003]
Length = 552
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 58/183 (31%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR---INNPEANKT 111
P + + SVG P+ E++I D++ V G++ +R GP V R +N E ++
Sbjct: 371 PVDAGQFSGSVGYPLPSTEISIRDDDKAAVATGVIGEVWVR-GPQVMRGYWMNPAETSEA 429
Query: 112 AFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD---------------- 143
GW +GD+GY R L + +K+ P+EV+
Sbjct: 430 ISPDGWLRTGDVGYLTPARMLVLVDRKKDVVVVSGFKVYPSEVEAVVRTLGGVSAAAAVG 489
Query: 144 ------------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
AV E C+ N++++KVP+ + D+L L GK+ R
Sbjct: 490 VPDERTGQAVKLFVVRSSADLTAAAVLEHCRANLSAYKVPRSIEFRDTLPLNQL-GKVLR 548
Query: 180 RIV 182
RI+
Sbjct: 549 RIL 551
>gi|186471739|ref|YP_001863057.1| AMP-dependent synthetase and ligase [Burkholderia phymatum STM815]
gi|184198048|gb|ACC76011.1| AMP-dependent synthetase and ligase [Burkholderia phymatum STM815]
Length = 523
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR---INNPEANKT 111
P + H + SVG P+ E++I D++G A G++ +R GP V R +N E K
Sbjct: 342 PTDAKHFSGSVGYPLPSTEVSIRDDDGAVLAAGSIGEVWVR-GPQVMRGYWMNPDETAKA 400
Query: 112 AFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
GW +GD+GYF + L + +K+ P+EV+AV
Sbjct: 401 ISPDGWLRTGDVGYFTPTQMLVLVDRKKDVIIVSGFKVYPSEVEAV 446
>gi|296330064|ref|ZP_06872547.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675663|ref|YP_003867335.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296152789|gb|EFG93655.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413907|gb|ADM39026.1| O-succinylbenzoic acid-CoA ligase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 486
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 76/194 (39%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G K +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQACKPFEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+ +FQ GW +GDLGY DS+ L + I P EV++V
Sbjct: 350 RESANEASFQNGWLKTGDLGYLDSEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
+CK +A +K+P K F DSL +
Sbjct: 410 AEAGVSGAEDKKWGKVPHAYLVLHKPVSAEELTAYCKERLAKYKIPAKFFELDSLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLMRNQLKDARK 482
>gi|120403865|ref|YP_953694.1| acyl-CoA synthetase [Mycobacterium vanbaalenii PYR-1]
gi|119956683|gb|ABM13688.1| AMP-dependent synthetase and ligase [Mycobacterium vanbaalenii
PYR-1]
Length = 557
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 56/187 (29%)
Query: 53 VLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
L P A S G+PV E AI D++ V G++ R M+ +++
Sbjct: 362 ALGPDEQDAHAGSAGRPVINVETAILDDDNSPVAPGVVGEIAHRSPHLMLGYLDDDAKTA 421
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------AVKE---- 147
+F+ GWF SGDLGY+D L++ ++ EV+ AV+E
Sbjct: 422 ESFRGGWFHSGDLGYYDGHGLLHVVDRKKDMIKTGGENVASREVEEVIYRHSAVEEVAVF 481
Query: 148 ------------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
C+ ++A FK PK+V+ DSL P +GK+
Sbjct: 482 GLPHPVWVEAVVAAVVVRDGMEVTEDELASHCRAHLAGFKTPKQVYFVDSLPKNP-SGKL 540
Query: 178 QRRIVAE 184
+R + E
Sbjct: 541 LKRSLRE 547
>gi|410626347|ref|ZP_11337110.1| long-chain acyl-CoA synthetase [Glaciecola mesophila KMM 241]
gi|410154167|dbj|GAC23879.1| long-chain acyl-CoA synthetase [Glaciecola mesophila KMM 241]
Length = 552
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 60/177 (33%)
Query: 65 SVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWFLSG 121
S+G P+ ++ + D++GVD G+M ++ GP MV +N PEA + Q GW +G
Sbjct: 378 SIGLPLPSTDIRLVDDDGVDVAPGEAGEMLVK-GPQVMVGYLNRPEATEEIMQDGWLATG 436
Query: 122 DL------GYF---DSQRCLNM---WKISPTEVDAVK----------------------- 146
D+ GYF D ++ + + + + P E++ V
Sbjct: 437 DIARCDEDGYFYIVDRKKDMILVSGFNVFPNEIEEVAAMHDHIVEVAAVGIPHEASGEVV 496
Query: 147 -----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
E C++++ +KVPKKV D L K GKI RR ELR
Sbjct: 497 KLYAVRREDSLSEQDVIEHCRKHLTGYKVPKKVEFRDELP-KSNVGKILRR---ELR 549
>gi|220923018|ref|YP_002498320.1| acyl-CoA synthetase [Methylobacterium nodulans ORS 2060]
gi|219947625|gb|ACL58017.1| AMP-dependent synthetase and ligase [Methylobacterium nodulans ORS
2060]
Length = 545
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 58/170 (34%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ- 129
++ I DE G + G++C+ GP V NNPEAN+ +F+ GWF +GDLG+ D
Sbjct: 363 QVQIQDEQGREVGPGETGEICVC-GPAVFAGYYNNPEANQKSFRDGWFRTGDLGHVDEDG 421
Query: 130 ------RCLNMW-----KISPTEVD-------AVKE------------------------ 147
R +M+ + P E + AV E
Sbjct: 422 FLFITGRASDMYISGGSNVYPRETEEKVLQHPAVAEIAILGVPDKTWGEVGVAVCVLKAG 481
Query: 148 ----------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV-AELR 186
+ + VA +K+PK+VFI D L K GKI ++ V AEL
Sbjct: 482 ATLSEQELLSWLENKVARYKLPKRVFIWDELP-KSGYGKITKKAVRAELE 530
>gi|440750636|ref|ZP_20929877.1| Long-chain-fatty-acid--CoA ligase [Mariniradius saccharolyticus
AK6]
gi|436480854|gb|ELP37066.1| Long-chain-fatty-acid--CoA ligase [Mariniradius saccharolyticus
AK6]
Length = 560
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 77/205 (37%), Gaps = 62/205 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++ C P +G + ++G P+ ++ I D+NG D G++CI+
Sbjct: 358 YGLTETSPVATCN-----PIDGTERIGTIGVPLPNTDVKIIDDNGNDLPIGERGELCIK- 411
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV 142
GP V R P+ WF +GD+ D L + + + P EV
Sbjct: 412 GPQVMRGYWQRPDETAKVMDGEWFKTGDVAVMDGDGFLKIVDRKKEMILVSGFNVYPNEV 471
Query: 143 ----------------------------------------DAVKEFCKRNVASFKVPKKV 162
+ + CK + ++KVP++V
Sbjct: 472 ENAIALHPKVLETGVIGMPDDKSTEKVVAYVVAKDKSLTAEELIAHCKTQLTNYKVPREV 531
Query: 163 FIADSLSGKPLTGKIQRRIVAELRK 187
+ AD L K GKI RR + E+ +
Sbjct: 532 YFADELP-KTNVGKILRRKIKEMHE 555
>gi|109899114|ref|YP_662369.1| AMP-dependent synthetase and ligase [Pseudoalteromonas atlantica
T6c]
gi|109701395|gb|ABG41315.1| AMP-dependent synthetase and ligase [Pseudoalteromonas atlantica
T6c]
Length = 552
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 60/177 (33%)
Query: 65 SVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWFLSG 121
S+G P+ ++ + D++GVD G+M ++ GP MV +N PEA + Q GW +G
Sbjct: 378 SIGLPLPSTDIRLVDDDGVDVAPGEAGEMLVK-GPQVMVGYLNRPEATEEIMQDGWLATG 436
Query: 122 DL------GYF---DSQRCLNM---WKISPTEVDAVK----------------------- 146
D+ GYF D ++ + + + + P E++ V
Sbjct: 437 DIARCDEDGYFYIVDRKKDMILVSGFNVFPNEIEEVAAMHDHIVEVAAVGIPHEASGEVV 496
Query: 147 -----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
E C++++ +KVPKKV D L K GKI RR ELR
Sbjct: 497 KLYAVRREDSLSEQDVIEHCRKHLTGYKVPKKVEFRDELP-KSNVGKILRR---ELR 549
>gi|288553657|ref|YP_003425592.1| long-chain-fatty-acid--CoA ligase [Bacillus pseudofirmus OF4]
gi|288544817|gb|ADC48700.1| long-chain fatty-acid-CoA ligase [Bacillus pseudofirmus OF4]
Length = 569
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 64/207 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAI--PDENGVDQKANVNGKMCIR 95
+G S ++ C + G H+ +S+G P A+ E G + G++ +R
Sbjct: 358 YGLTEASPVTHCNLLW-----GDHRQASIGLPWPDTEAVILSMETGEPVEQGEVGELAVR 412
Query: 96 EGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNM-----WKISPTE 141
GP + + N PEA + Q W L+GD+GY D + R +M + I P E
Sbjct: 413 -GPQIMKGYWNRPEATQATMQDDWLLTGDMGYMDEEGYFYIVDRKKDMIIAGGFNIYPRE 471
Query: 142 VDAV-----------------------------------------KEFCKRNVASFKVPK 160
++ V ++C++++A++KVP+
Sbjct: 472 IEEVLYNHEDIQEAVAIGVPDEYRGETVKVFVVLKEGKQLTEKELNQYCRKHLAAYKVPR 531
Query: 161 KVFIADSLSGKPLTGKIQRRIVAELRK 187
+ L K + GKI +R++ E K
Sbjct: 532 LYEFREELP-KTIVGKILKRVLIEEEK 557
>gi|399046235|ref|ZP_10738693.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Brevibacillus
sp. CF112]
gi|433547002|ref|ZP_20503288.1| long-chain-fatty-acid--CoA ligase [Brevibacillus agri BAB-2500]
gi|398055596|gb|EJL47657.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Brevibacillus
sp. CF112]
gi|432181704|gb|ELK39319.1| long-chain-fatty-acid--CoA ligase [Brevibacillus agri BAB-2500]
Length = 523
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 54 LLPKNGPHKASSVGKP--VRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANK 110
LL + P K SVG + E+ + DENG+ A G++ +R EG M N PEA
Sbjct: 325 LLHREHPDKVGSVGNRGVLFAEVEVVDENGLPVPAGTPGEVRVRGEGSMKGYYNTPEATI 384
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKIS 138
+ GW +GD+G FD L W I
Sbjct: 385 ETLRDGWIYTGDIGRFDEDGFL--WIID 410
>gi|326381351|ref|ZP_08203045.1| O-succinylbenzoate-CoA ligase [Gordonia neofelifaecis NRRL B-59395]
gi|326199598|gb|EGD56778.1| O-succinylbenzoate-CoA ligase [Gordonia neofelifaecis NRRL B-59395]
Length = 518
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE 96
FG +A +VC VL + A SVGKPV EM + D+ G + V G++ +R
Sbjct: 311 FG-LTETAPNVC---VLAVEEAIEYAGSVGKPVLHVEMKVADDGGREVAPGVIGELLVR- 365
Query: 97 GP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
GP V N PEA A + GWF +GDL D +
Sbjct: 366 GPNVFVGYWNKPEATAEALRDGWFHTGDLATCDEE 400
>gi|373248754|emb|CCD31867.1| acyl-CoA synthetase [Streptomyces albus subsp. albus]
Length = 499
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P + +S G+PV E + DE+G + G++ R
Sbjct: 297 YNCFGQSEIGPLAT-VLGPAEHAERPASCGRPVLFVEARVVDEDGAEVPPGTAGEVVYRS 355
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ + + PE + AF+ GWF SGDL D Q L T VD VK+
Sbjct: 356 PQLCEGYWDKPEESAEAFRAGWFHSGDLAVRDEQGYL-------TVVDRVKDVINSGGVL 408
Query: 153 VASFKVPKKVFIADSLSGKP 172
VAS +V D+L G P
Sbjct: 409 VASRQV------EDALYGHP 422
>gi|254365716|ref|ZP_04981761.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis str.
Haarlem]
gi|134151229|gb|EBA43274.1| fatty-acid-CoA ligase fadD13 [Mycobacterium tuberculosis str.
Haarlem]
Length = 503
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVTFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|336268995|ref|XP_003349259.1| hypothetical protein SMAC_05543 [Sordaria macrospora k-hell]
gi|380089832|emb|CCC12365.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 505
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 68/163 (41%), Gaps = 57/163 (34%)
Query: 77 PDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQ-FGWFLSGDLGYFDS------ 128
P G+ Q V G++CIR E +NNP AN ++F G+F +GD G D
Sbjct: 333 PGTVGLGQGVEV-GEICIRGENVTKGYLNNPAANASSFTPSGYFRTGDQGKKDEDGYVVI 391
Query: 129 ----QRCLNMW--KISPTEVDAV------------------------------------- 145
+ +N KISP E+D V
Sbjct: 392 TGRIKELINKGGEKISPIELDNVLTRHPAVSEAVSFAVPDEMYGQEVAVAIVLKSGQKGD 451
Query: 146 -KEFCK---RNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+EF K +A FKVPKK++ D + K TGKIQRRIVAE
Sbjct: 452 AEEFRKWVGDKLAKFKVPKKIYFTDVMP-KTATGKIQRRIVAE 493
>gi|317129858|ref|YP_004096140.1| AMP-dependent synthetase and ligase [Bacillus cellulosilyticus DSM
2522]
gi|315474806|gb|ADU31409.1| AMP-dependent synthetase and ligase [Bacillus cellulosilyticus DSM
2522]
Length = 572
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 95/237 (40%), Gaps = 68/237 (28%)
Query: 8 IHGAAQLTITPYTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVG 67
I G+A L + T+ KGR+ +G TS ++ + KNG S+G
Sbjct: 332 ISGSAPLPLEVQTSFEEKTKGRLVEG----YGLTETSPVAAANLIWSSRKNG-----SIG 382
Query: 68 KPV-RREMAIPD-ENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDL 123
P +MA+ EN + N G++ I+ GP V + N PE + F+ W L+GD+
Sbjct: 383 IPWPDTDMAVLSVENADIAEPNEIGEIMIK-GPQVMKGYWNRPEDTQATFKGEWLLTGDM 441
Query: 124 GYFDS-------QRCLNM-----WKISPTEVDAV-------------------------- 145
GY D R +M + I P E++ V
Sbjct: 442 GYMDEDGFFYIVDRKKDMIIAGGFNIYPREIEEVLYEHEDIQEACAIGVPDPYRGETVKA 501
Query: 146 ---------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELRK 187
+E+C++ +A++K+P+ D L K + GKI RR++ E K
Sbjct: 502 FIVLKEGRQVSEVELEEYCRKQLAAYKIPRIFEFRDELP-KTMVGKILRRVLVEEEK 557
>gi|306832150|ref|ZP_07465304.1| long-chain fatty-acid-CoA ligase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304425589|gb|EFM28707.1| long-chain fatty-acid-CoA ligase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 503
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFLSG 121
K SVGKP + ++AI +N + ++A G++ +R GP V + + + +AF+ GW L+G
Sbjct: 319 KQGSVGKPFKIDLAIVKDNQLTKQAMQTGEVALR-GPQV-ITDYLQPSPSAFKDGWLLTG 376
Query: 122 DLGYFDSQRCLNM------------WKISPTEVDAV---KEFCKRNVASFKVPKKVF 163
D+G+ D L + KISP V+ V +F K +VA V +V+
Sbjct: 377 DIGHLDEDGYLYLEGRKKDFINRGGEKISPVIVEDVLAQLDFIK-DVAVIPVADEVY 432
>gi|88705663|ref|ZP_01103373.1| long chain fatty acid CoA ligase [Congregibacter litoralis KT71]
gi|88700176|gb|EAQ97285.1| long chain fatty acid CoA ligase [Congregibacter litoralis KT71]
Length = 566
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 57/181 (31%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAFQFGWF 118
+ S G+ P ++AI DEN A G++CI + N PEA AF+ GWF
Sbjct: 379 RPGSAGRVVPAVTDIAILDENDQPLPAGERGEVCIHSPANCLGYWNKPEATAEAFRDGWF 438
Query: 119 LSGDLGYFDSQRCLNM------------WKISPTEVDA---------------------- 144
+GD+GY D L + IS EV+A
Sbjct: 439 HTGDVGYMDEDGFLFIVDRIKEIIIRGGENISCIEVEAGIYQHPAILEAAVYGVPDERLG 498
Query: 145 -------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKI-QRRIVAE 184
++EF + ++A FK+P V D + TGKI +R++ AE
Sbjct: 499 EAVAASVVLREGETLTTEGLQEFLREHIAGFKIPAHVRFHDEALPRIATGKIFKRQLKAE 558
Query: 185 L 185
L
Sbjct: 559 L 559
>gi|302418490|ref|XP_003007076.1| luciferin 4-monooxygenase [Verticillium albo-atrum VaMs.102]
gi|261354678|gb|EEY17106.1| luciferin 4-monooxygenase [Verticillium albo-atrum VaMs.102]
Length = 463
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMV--Q 101
+S TV +L G K +SVGKP E+ I DEN D + V+G+ C+ GP V +
Sbjct: 251 GMSEATVTLLRNTRGGQKGASVGKPAAGMEVRIVDENYNDVQEGVDGE-CLIRGPSVFME 309
Query: 102 RINNPEANKTAFQFGWFLSGDLGYFD 127
NN AF+ GW +GD+ + D
Sbjct: 310 YKNNEAETAAAFRGGWMCTGDIVHVD 335
>gi|326579759|gb|ADZ96250.1| 4-coumarate: coenzyme A ligase [Panicum virgatum]
Length = 575
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K S G VR E+ + D + G+ N+ G++CIR GP + +
Sbjct: 375 LSMCPAFAKEPS--PAKPGSCGTVVRNAELKVVDPDTGLLLGRNLPGEICIR-GPQIMKG 431
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA GW +GD+GY D + + VD VKE K F+VP
Sbjct: 432 YLNDPEATARTIDVDGWLHTGDIGYVDDDEEVFI-------VDRVKELIK--FKGFQVP 481
>gi|149392663|gb|ABR26134.1| peroxisomal-coenzyme a synthetase [Oryza sativa Indica Group]
Length = 45
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Query: 150 KRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+RN+A+FKVPKKV+IAD L K TGKIQRRIVA+
Sbjct: 1 RRNLAAFKVPKKVYIADELP-KTATGKIQRRIVAQ 34
>gi|238491880|ref|XP_002377177.1| coenzyme A synthetase, putative [Aspergillus flavus NRRL3357]
gi|220697590|gb|EED53931.1| coenzyme A synthetase, putative [Aspergillus flavus NRRL3357]
Length = 516
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 73/182 (40%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + SVG E+ I D++G + ++C+R E +NNP ANK++F + G
Sbjct: 327 GKRQPGSVGLGQGVEIKILDQDGNEVPQGKEAEICVRGENVTKGYLNNPSANKSSFTKDG 386
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVD--------------------- 143
+F +GD G D + +N KISP E+D
Sbjct: 387 FFRTGDQGKKDPDGYVIITGRIKELINKGGEKISPIELDNTLLHHPKVAEAVCFAIPDEG 446
Query: 144 ---------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+K F +A FK PK+V+I + K TGKIQRR V
Sbjct: 447 HYGEDIGAAVVLKGNNTATEDELKSFMAEKLAKFKTPKRVWIVPQIP-KTATGKIQRRKV 505
Query: 183 AE 184
AE
Sbjct: 506 AE 507
>gi|392424864|ref|YP_006465858.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Desulfosporosinus acidiphilus SJ4]
gi|391354827|gb|AFM40526.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Desulfosporosinus acidiphilus SJ4]
Length = 544
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
HK +++G P E+ I DENG D G++ ++ GP V + N+PEA A Q GW
Sbjct: 355 HKVAAIGIPGHNWEVKITDENGCDVVQGQVGELVVK-GPGVMKCYYNDPEATAAALQNGW 413
Query: 118 FLSGDLGYFDSQ 129
+GD+ D +
Sbjct: 414 LFTGDMARMDEE 425
>gi|384214720|ref|YP_005605884.1| hypothetical protein BJ6T_10040 [Bradyrhizobium japonicum USDA 6]
gi|354953617|dbj|BAL06296.1| hypothetical protein BJ6T_10040 [Bradyrhizobium japonicum USDA 6]
Length = 516
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V VL ++ KA S GKPV E+ I +G D G++ ++ GP + N PE
Sbjct: 314 VLVLDREDAARKAGSAGKPVLHTEVRIVRPDGSDADVGELGELWVK-GPNITPGYWNRPE 372
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVD-------AVKE- 147
ANKT+F GW +GD D + ++ WK + P EV+ A+ E
Sbjct: 373 ANKTSFTDGWLHTGDATRVDEEGFYYIVDRWKDMYISGGENVYPAEVENVLHQLTAIAEA 432
Query: 148 ---------------------------------FCKRNVASFKVPKKVFIADSLSGKPLT 174
C N+A FK P++V D+L + T
Sbjct: 433 AVIGIPDPQWGEVGLAIVAAKPGQRLTEADVFAHCAANLARFKCPRQVRFVDALP-RNAT 491
Query: 175 GKIQR 179
GKI +
Sbjct: 492 GKIHK 496
>gi|91081619|ref|XP_966806.1| PREDICTED: similar to AMP dependent coa ligase [Tribolium
castaneum]
gi|270005090|gb|EFA01538.1| hypothetical protein TcasGA2_TC007098 [Tribolium castaneum]
Length = 574
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQK---ANVNGKMC 93
+G TS + T L K P+ + ++G+PV + I D N ++ AN G++
Sbjct: 367 YGLTETSPMVAMTRAAL--KKLPNSSGTIGRPVSNTSVKIIDPNDPNETPLGANTTGELV 424
Query: 94 IREGPMVQR--INNPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
++ GP V + N PE + AF + GWF +GD+ Y+D + L + D +KE K
Sbjct: 425 VK-GPQVMKGYHNRPEETRDAFTKDGWFRTGDMMYYDDNKLLFVS-------DRLKELIK 476
Query: 151 RNVASFKVP 159
V F+VP
Sbjct: 477 --VKGFQVP 483
>gi|406838494|ref|ZP_11098088.1| AMP-binding protein [Lactobacillus vini DSM 20605]
Length = 503
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 32/156 (20%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP 98
G +T + S CT+ L K SVGKP ++AI + K V G++ IR
Sbjct: 302 GYGMTESCSQCTLNPL----DRIKLGSVGKPYHTDVAIIQGDAFTTKPGVQGEIAIRGDH 357
Query: 99 MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW--------------KISPTEVDA 144
++ + + + ++F+ GW +GDLGYFD L W KISP V+A
Sbjct: 358 VI--TDYLDHHPSSFKEGWLKTGDLGYFDGDGYL--WLNGRIKDIINHGGEKISPAVVEA 413
Query: 145 V---KEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
V +F K +VA VP DS G+ + I
Sbjct: 414 VISELDFVK-DVAVVPVP------DSFYGENVAAAI 442
>gi|158314683|ref|YP_001507191.1| acyl-CoA synthetase [Frankia sp. EAN1pec]
gi|158110088|gb|ABW12285.1| AMP-dependent synthetase and ligase [Frankia sp. EAN1pec]
Length = 528
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 24 LFYKGRVYLPPRLE---------FGCFVTSAISVCTVFVLLPK-NGPHKASSVGKPV-RR 72
LFY P RL F F A TV VL K + P + +S G+PV
Sbjct: 293 LFYGASAMSPSRLAEAMETLGPIFFQFYGQAECPMTVTVLRKKQHHPDRLASCGQPVPWL 352
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
++A+ D++G + G++C+R GP+V + N P+ AF+ GW +GD+ D
Sbjct: 353 DVALLDDDGREVDTGEPGEICVR-GPLVMARYHNQPDQTAEAFRHGWLHTGDIATADHDG 411
Query: 131 CLNM 134
L +
Sbjct: 412 FLTI 415
>gi|169773859|ref|XP_001821398.1| peroxisomal-coenzyme A synthetase [Aspergillus oryzae RIB40]
gi|83769259|dbj|BAE59396.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 516
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 73/182 (40%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + SVG E+ I D++G + ++C+R E +NNP ANK++F + G
Sbjct: 327 GKRQPGSVGLGQGVEIKILDQDGNEVPQGKEAEICVRGENVTKGYLNNPSANKSSFTKDG 386
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVD--------------------- 143
+F +GD G D + +N KISP E+D
Sbjct: 387 FFRTGDQGKKDPDGNVIITGRIKELINKGGEKISPIELDNTLLHHPKVAEAVCFAIPDEG 446
Query: 144 ---------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+K F +A FK PK+V+I + K TGKIQRR V
Sbjct: 447 HYGEDIGAAVVLKGNNTATEDELKSFMAEKLAKFKTPKRVWIVPQIP-KTATGKIQRRKV 505
Query: 183 AE 184
AE
Sbjct: 506 AE 507
>gi|361127194|gb|EHK99170.1| putative peroxisomal-coenzyme A synthetase [Glarea lozoyensis
74030]
Length = 494
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
Y P LE +T A T L P G + SVG E+AI D+ G K
Sbjct: 297 ETYNAPVLE-AYAMTEAAHQMTSNPLPP--GKRQPGSVGIGQGVEVAILDQEGKKVKQGS 353
Query: 89 NGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGDLGYFDS----------QRCLNMW- 135
++CIR E +NNPEANK++F + G+F +GD G D + +N
Sbjct: 354 EAEICIRGENVTKGYLNNPEANKSSFTKDGYFRTGDQGKLDKDGYVIITGRIKELINKGG 413
Query: 136 -KISPTEVDAV--KEFCKRNVASFKVPKKVFIAD 166
KISP E+D V + SF +P +++ D
Sbjct: 414 EKISPIELDNVLARHPKVSEAVSFAIPDEMYGQD 447
>gi|433632177|ref|YP_007265805.1| Putative chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140070010]
gi|432163770|emb|CCK61196.1| Putative chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140070010]
Length = 503
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA++
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRERG-EGEVVIKSDILLKEYWNRPEASR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E++ V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIENVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|406927086|gb|EKD63172.1| hypothetical protein ACD_51C00326G0002 [uncultured bacterium]
Length = 517
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 67/179 (37%), Gaps = 56/179 (31%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR-INNPEANKTAFQFGWFL 119
+ SVG+P+ EM I D+ + N G++CIR + + + E NK AF+ GWF
Sbjct: 334 RQGSVGRPLPVNEMTIVDDLDNELGPNQEGEICIRGLNVAKEYLGLEEKNKKAFRNGWFH 393
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEVDAV---------------------- 145
SGD GY D+ I P E++ V
Sbjct: 394 SGDYGYRDANNYFYFKTRKDFLIIKGGENIYPAELENVLFRHPAVAESAVIGIPDKLLGE 453
Query: 146 -------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
K FCK +A +K KK+ I D + P T K+ RI+ E
Sbjct: 454 DICAFVKLHDNLTATEEELKVFCKGKIAQYKQAKKIIITDEIPKGP-TKKVLYRILKEF 511
>gi|152993822|ref|YP_001359543.1| long-chain-fatty-acid--CoA ligase [Sulfurovum sp. NBC37-1]
gi|151425683|dbj|BAF73186.1| long-chain fatty-acid-CoA ligase [Sulfurovum sp. NBC37-1]
Length = 514
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 57/180 (31%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWF 118
KA SVG E+ I DE+ + G + +R ++Q +N PEA + GW
Sbjct: 330 QKAGSVGTAAHDYEIKIVDEDMNELPTGEIGDIIVRGDHVMQGYLNRPEATRETIVNGWL 389
Query: 119 LSGDLGYFDSQRCLNM------------WKISPTEVDAV--------------------- 145
L+GD+GY D + L + I P E++ V
Sbjct: 390 LTGDMGYLDDEGFLFLVDRKKDLIISKGINIYPREIEEVIDAFEGVAASAVIGVRDEKSG 449
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K+ + N+A+FK+PK++ + D L K TGK+ +R++ +
Sbjct: 450 EIPVAYLELEEDVESCDEASLKKHMRENLANFKLPKQIHVIDELP-KNATGKVLKRVLKD 508
>gi|406896154|gb|EKD40528.1| hypothetical protein ACD_75C00022G0003 [uncultured bacterium]
Length = 546
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 70 VRREMAIPDENGVDQKANVN-GKMCIREGP--MVQRINNPEANKTAFQFGWFLSGDLGYF 126
+ E I D NG + A+ + G++C R GP M P+ + A + GWF SGDLG
Sbjct: 371 LHMESRIEDGNGAEITASDSPGEICGR-GPHVMTMYFKEPDKTEAAMRGGWFHSGDLGVL 429
Query: 127 DSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
D R + T VD +K+ K NVAS +V + V++ ++ + G R V
Sbjct: 430 DRDRYI-------TVVDRIKDMIKTGGENVASREVEEAVYLHPAVEEVAVVGLEHPRWV 481
>gi|346970087|gb|EGY13539.1| peroxisomal-coenzyme A synthetase [Verticillium dahliae VdLs.17]
Length = 517
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 84/212 (39%), Gaps = 59/212 (27%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
+ Y P LE +T A T L P K +VG E+ I D+ G +
Sbjct: 299 KTYKAPVLE-AYAMTEAAHQMTSNPLPPAK--RKPGTVGLGQGVEIKILDDQGNELAQGA 355
Query: 89 NGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGDLGYFDS----------QRCLNMW- 135
G++ I+ E +NN AN ++F G+F +GD G D + +N
Sbjct: 356 EGEISIKGENVTHGYLNNAAANASSFTSSGFFRTGDQGKLDEDGYVIITGRIKELINKGG 415
Query: 136 -KISPTEVDAV-----------------------------------------KEFCKRNV 153
KISP E+D V +++ +
Sbjct: 416 EKISPIELDNVLTRHPAVSEAVSFAIPDDMYGQDIGVAVVLKSGEKLEQDELRKWIADKL 475
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
A FKVPKKV+ +++ K TGKIQRRIVAE+
Sbjct: 476 AKFKVPKKVYFTETMP-KTATGKIQRRIVAEI 506
>gi|326781277|ref|ZP_08240542.1| Long-chain-fatty-acid--CoA ligase [Streptomyces griseus XylebKG-1]
gi|326661610|gb|EGE46456.1| Long-chain-fatty-acid--CoA ligase [Streptomyces griseus XylebKG-1]
Length = 499
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R +LP F CF S I VL P + S G+PV E + DE G D
Sbjct: 290 REHLPRLAFFNCFGQSEIGPLAT-VLGPDEHEGRMDSCGRPVLFVEARVVDEKGEDVPDG 348
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + PE AF+ GWF SGDL D++ L T VD VK
Sbjct: 349 TAGEVVYRSPQLCSGYWDKPEETAAAFRDGWFHSGDLAVRDAEGFL-------TVVDRVK 401
Query: 147 EFCKRN---VASFKVPKKVFIADSLSGKPLTG 175
+ VAS +V ++ +++ + G
Sbjct: 402 DVINSGGVLVASRQVEDALYTHPAVAETAVVG 433
>gi|418056244|ref|ZP_12694297.1| o-succinylbenzoate--CoA ligase [Hyphomicrobium denitrificans 1NES1]
gi|353209463|gb|EHB74866.1| o-succinylbenzoate--CoA ligase [Hyphomicrobium denitrificans 1NES1]
Length = 513
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 77/197 (39%), Gaps = 60/197 (30%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCI---REGP--M 99
+S + ++ + PHK +VGK R + I G DQ + + + I R P M
Sbjct: 309 MSEISTYISTGPSVPHKPGTVGKAQAGRRVVILAVEGNDQPLSPDSEGLIAVHRSDPGLM 368
Query: 100 VQRINNPEANKTAFQFGWFLSGDLGYFD----------SQRCLNM--WKISPTEVDA--- 144
+ P+ F+ WF GDLG D S +N +++SP EV+A
Sbjct: 369 LGYWKRPQEEAEVFRGEWFTGGDLGSIDDDGYITHLGRSNELMNAGGYRVSPLEVEAAIA 428
Query: 145 --------------------------------------VKEFCKRNVASFKVPKKVFIAD 166
+KEF K ++A++K+P++V D
Sbjct: 429 CCPAVAEVACAEIRIRSDVSIIAAFVVAADGAVRDATAIKEFAKEHLAAYKIPREVVFID 488
Query: 167 SLSGKPLTGKIQRRIVA 183
L P GK+QR+ +A
Sbjct: 489 RLPRTP-NGKVQRKALA 504
>gi|121053838|gb|ABM47018.1| acyl-CoA ligase [Amycolatopsis orientalis]
Length = 511
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 63/188 (33%)
Query: 60 PHKASSVGKPV-RREMAIPDENGVDQKANVN----GKMCIR-EGPMVQRINNPEANKTAF 113
P +A +VGKP+ ++AI D+ V G++ +R M +N PEA A
Sbjct: 322 PTRAGTVGKPIWGVDVAIARAETEDRIEPVPPGEVGEIVVRGHNVMAGYLNRPEATAAAI 381
Query: 114 QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV---------------- 145
GWF SGDLG+ D L++ + + P E++ V
Sbjct: 382 VDGWFRSGDLGFLDDDGYLSIVDRKKDMILRGGYNVYPREIEEVLARHPAIAQVAVVGVP 441
Query: 146 -----KEFC-----------------------KRNVASFKVPKKVFIADSLSGKPLTGKI 177
+E C K+ VA++K P++V D++ P +GKI
Sbjct: 442 DERYGEEICAVVVAASDREPGPELAAELVAWSKKRVAAYKYPRRVEFLDAMPLGP-SGKI 500
Query: 178 QRRIVAEL 185
+R +AEL
Sbjct: 501 LKRELAEL 508
>gi|391869123|gb|EIT78328.1| acyl-CoA synthetase [Aspergillus oryzae 3.042]
Length = 516
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 73/182 (40%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + SVG E+ I D++G + ++C+R E +NNP ANK++F + G
Sbjct: 327 GKRQPGSVGLGQGVEIKILDQDGNEVPQGKEAEICVRGENVTKGYLNNPSANKSSFTKDG 386
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVD--------------------- 143
+F +GD G D + +N KISP E+D
Sbjct: 387 FFRTGDQGKKDPDGYVIITGRIKELINKGGEKISPIELDNTLLHHPKVAEAVCFAIPDEG 446
Query: 144 ---------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+K F +A FK PK+V+I + K TGKIQRR V
Sbjct: 447 HYGEDIGAAVVLKGNNTATEDELKSFMAEKLAKFKTPKRVWIVPQIP-KTATGKIQRRKV 505
Query: 183 AE 184
AE
Sbjct: 506 AE 507
>gi|393199315|ref|YP_006461157.1| acyl-CoA synthetase/AMP-acid ligase II [Solibacillus silvestris
StLB046]
gi|327438646|dbj|BAK15011.1| acyl-CoA synthetase/AMP-acid ligase II [Solibacillus silvestris
StLB046]
Length = 495
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 54 LLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
LL K SVGKP+ R ++ + D NG G++C+R GP V + + PE
Sbjct: 307 LLNDAALFKIGSVGKPLARTDIQLRDANGEIVPLGEVGEICVR-GPQVMKGYLRAPEETA 365
Query: 111 TAFQFGWFLSGDLGYFDSQRCL 132
+ Q GW +GDLG FD + L
Sbjct: 366 KSIQDGWLYTGDLGRFDEEGYL 387
>gi|300023172|ref|YP_003755783.1| AMP-dependent synthetase and ligase [Hyphomicrobium denitrificans
ATCC 51888]
gi|299524993|gb|ADJ23462.1| AMP-dependent synthetase and ligase [Hyphomicrobium denitrificans
ATCC 51888]
Length = 512
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 60/197 (30%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQK--ANVNGKMCIRE---GPM 99
+S + ++ + PHKA +VGK R +AI G D+ N G + + G M
Sbjct: 308 MSEISTYISTGPSVPHKAGTVGKAQAGRRVAILAVEGSDEPLPPNREGLIAVHRSDPGLM 367
Query: 100 VQRINNPEANKTAFQFGWFLSGDLGYFDSQ----------RCLNM--WKISPTEVDA--- 144
+ P+ + WF GDLG D + +N +++SP EV+A
Sbjct: 368 LGYWKRPDEEAEVLRGEWFTGGDLGSIDDEGYIAHLGRANELMNAGGYRVSPLEVEAALG 427
Query: 145 --------------------------------------VKEFCKRNVASFKVPKKVFIAD 166
+K+F RN+A++K+P+++ +
Sbjct: 428 RCPGVAEVACTEMRVRSDVSIIAAFVVAAEGAPRDASAIKDFANRNLAAYKIPREIVFVE 487
Query: 167 SLSGKPLTGKIQRRIVA 183
L P GK+QR+ +A
Sbjct: 488 RLPRTP-NGKVQRKALA 503
>gi|182440603|ref|YP_001828322.1| acyl-CoA synthetase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178469119|dbj|BAG23639.1| putative acyl-CoA synthetase [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 499
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R +LP F CF S I VL P + S G+PV E + DE G D
Sbjct: 290 REHLPRLAFFNCFGQSEIGPLAT-VLGPDEHEGRMDSCGRPVLFVEARVVDEKGEDVPDG 348
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + PE AF+ GWF SGDL D++ L T VD VK
Sbjct: 349 TAGEVVYRSPQLCSGYWDKPEETAAAFRDGWFHSGDLAVRDAEGFL-------TVVDRVK 401
Query: 147 EFCKRN---VASFKVPKKVFIADSLSGKPLTG 175
+ VAS +V ++ +++ + G
Sbjct: 402 DVINSGGVLVASRQVEDALYTHPAVAETAVVG 433
>gi|374370883|ref|ZP_09628874.1| acyl-CoA synthetase [Cupriavidus basilensis OR16]
gi|373097577|gb|EHP38707.1| acyl-CoA synthetase [Cupriavidus basilensis OR16]
Length = 532
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
R LP F C+ S I VL P+ + +S G+PV E I DE D +
Sbjct: 316 RERLPALGFFNCYGQSEIGPLAT-VLGPQEHRERPASAGRPVLNVETRIVDEQMQDARPG 374
Query: 88 VNGKMCIREGPMV-QRINNPEANKTAFQFGWFLSGDLGYFDS 128
G++ R ++ + + P+ AF GWF SGDLGY D
Sbjct: 375 ELGEIVHRSPQLLTEYWDKPQQTTEAFSGGWFHSGDLGYMDE 416
>gi|374850585|dbj|BAL53570.1| AMP-dependent synthetase and ligase [uncultured Bacteroidetes
bacterium]
Length = 555
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 65 SVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQRIN-NPEANKTAFQFGWFLSGD 122
S+G P+ + EMAI D G G++ IR +++ + NP AN+ AF +GWF SGD
Sbjct: 361 SIGAPIPQNEMAIHDAQGNPLPEGERGEIVIRGWNVMKGYDANPSANEEAFAYGWFRSGD 420
Query: 123 LGYF 126
G+F
Sbjct: 421 EGFF 424
>gi|398308021|ref|ZP_10511495.1| O-succinylbenzoic acid--CoA ligase [Bacillus mojavensis RO-H-1]
Length = 486
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G + +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGKACEPFEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
ANK +FQ GW +GDLGY D + L + I P EV++V
Sbjct: 350 RESANKASFQNGWLKTGDLGYLDGEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
FCK +A +KVP K F+ D L +
Sbjct: 410 AEAGVSGAEDIKWGKVPHAYLVLQQPVRAEELTAFCKERLAKYKVPAKFFVLDRLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLLRNQLKDARK 482
>gi|256392682|ref|YP_003114246.1| AMP-dependent synthetase and ligase [Catenulispora acidiphila DSM
44928]
gi|256358908|gb|ACU72405.1| AMP-dependent synthetase and ligase [Catenulispora acidiphila DSM
44928]
Length = 715
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 60 PHKASSVGKPV-----RREMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTA 112
P + S GKP+ R E+++ DE G + G++C+ +GP+V + + +PE A
Sbjct: 524 PGRLGSCGKPLPFLADRAEISLRDEQGREVAQGEIGEVCV-QGPLVMAEYLGDPELTAQA 582
Query: 113 FQFGWFLSGDLGYFDSQRCLNM 134
GW +GDLG+FD L++
Sbjct: 583 LADGWLHTGDLGFFDPDGYLHL 604
>gi|433636159|ref|YP_007269786.1| Putative chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140070017]
gi|432167752|emb|CCK65274.1| Putative chain-fatty-acid-CoA ligase FadD13 (fatty-acyl-CoA
synthetase) [Mycobacterium canettii CIPT 140070017]
Length = 503
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIRERG-EGEVVIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E++ V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIENVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>gi|374852034|dbj|BAL54977.1| AMP-dependent synthetase and ligase [uncultured Chloroflexi
bacterium]
Length = 567
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 65 SVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFLSGD 122
S G+P+R + I DE+G D V G++ I+ M+ N P+ + AF+ GW+L+GD
Sbjct: 372 SSGRPLRNTRLRILDEHGHDLPERVVGEIAIQSDCMLNGYFNRPDLTRKAFRNGWYLTGD 431
Query: 123 LGYF 126
LGY
Sbjct: 432 LGYL 435
>gi|358457668|ref|ZP_09167884.1| o-succinylbenzoate--CoA ligase [Frankia sp. CN3]
gi|357078948|gb|EHI88391.1| o-succinylbenzoate--CoA ligase [Frankia sp. CN3]
Length = 571
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 65 SVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSG 121
SVG+P + ++ + D +G G++C R P V R N+ +A K +FQ GWF SG
Sbjct: 387 SVGRPNLTADVLVIDADGTPLDPGDVGEICFRS-PQVARGYWNDDDATKASFQDGWFHSG 445
Query: 122 DLGYFDSQ 129
DLGY D++
Sbjct: 446 DLGYLDAE 453
>gi|320038038|gb|EFW19974.1| O-succinylbenzoate-CoA ligase [Coccidioides posadasii str.
Silveira]
Length = 513
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 56/175 (32%)
Query: 65 SVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGD 122
SVG ++ I D G + G++CIR E +NNP ANK++F + G+F +GD
Sbjct: 329 SVGIGQGVDVRILDSEGNEVSQGTEGEICIRGENVTKGYLNNPTANKSSFTKGGFFRTGD 388
Query: 123 LGYFDSQRCLNMW------------KISPTEV---------------------------- 142
G D + + KISP E+
Sbjct: 389 QGKKDKDGYVYITGRIKELINKGGEKISPIELDNVITQNPHVAEAVSFAIPDQIYGEDIG 448
Query: 143 -------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
DA+K VA FKVPKK++I + K TGKIQRR VAE
Sbjct: 449 VAVVLKKRGSISEDALKAELAPKVAKFKVPKKIWILLEIP-KTATGKIQRRKVAE 502
>gi|126348154|emb|CAJ89875.1| putative long-chain-fatty-acid-CoA ligase [Streptomyces ambofaciens
ATCC 23877]
Length = 501
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R LP + CF S I VL P + S G+PV + + DE+G D
Sbjct: 290 RERLPGLAFYNCFGQSEIGPLAT-VLGPDEHEGRMDSCGRPVLFVDARVVDEDGKDAPDG 348
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + Q + PE + AF+ GWF SGDL D+ + VD VK
Sbjct: 349 TPGEIVYRSPQLCQGYWDKPEETEAAFRDGWFHSGDLAVRDADGYFTI-------VDRVK 401
Query: 147 EFCKRN---VASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ VAS +V ++ ++++ + G R +
Sbjct: 402 DVINSGGVLVASRQVEDALYTHEAVAEAAVIGLPDERWI 440
>gi|298243570|ref|ZP_06967377.1| AMP-dependent synthetase and ligase [Ktedonobacter racemifer DSM
44963]
gi|297556624|gb|EFH90488.1| AMP-dependent synthetase and ligase [Ktedonobacter racemifer DSM
44963]
Length = 524
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 24 LFYKGRVYLPPRL-----EFGCFVT--SAISVCTVFVLLPKNGPHKASSVGKPVRREMAI 76
F G YLPP L G V + C+ V + + H S G+P+
Sbjct: 298 FFVSGGAYLPPVLGSRWENMGVRVHPGYGTTECSPVVSVTRKHDHHMESAGQPL------ 351
Query: 77 PDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
GV+ + + ++ +R GP + + NNPEA AF+ W+ +GDLG+ D Q L
Sbjct: 352 ---PGVEVRIAPDNEILVR-GPNITQGYWNNPEATAAAFEGEWYRTGDLGFLDKQNRL 405
>gi|126652666|ref|ZP_01724827.1| long-chain fatty-acid-CoA ligase [Bacillus sp. B14905]
gi|126590515|gb|EAZ84633.1| long-chain fatty-acid-CoA ligase [Bacillus sp. B14905]
Length = 564
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 78/207 (37%), Gaps = 64/207 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVN--GKMCIR 95
+G TS ++ T P G S+G P AI G ++ V G++ ++
Sbjct: 356 YGLTETSPVTHAT-----PIWGKRVIGSIGLPWPNTEAIILRTGDTEELPVGEVGEIAVK 410
Query: 96 EGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNM-----WKISPTE 141
GP V + N PE F WFL+GDLGY D Q R +M + I P E
Sbjct: 411 -GPQVMKGYWNRPEDTAATFTDDWFLTGDLGYMDEQGYFYVVDRKKDMIIAGGFNIYPRE 469
Query: 142 V-----------------------------------------DAVKEFCKRNVASFKVPK 160
V D + ++C++++ASFKVP+
Sbjct: 470 VEEVLYEREEIQECVVAGIPDPYRGETVKAYIVLKEGYSITEDELNKYCRQHLASFKVPR 529
Query: 161 KVFIADSLSGKPLTGKIQRRIVAELRK 187
D L K GKI RR + + K
Sbjct: 530 YYEFKDELP-KTAVGKILRRTLVDEEK 555
>gi|338741708|ref|YP_004678670.1| acyl-coenzyme A synthetase [Hyphomicrobium sp. MC1]
gi|337762271|emb|CCB68106.1| putative acyl-coenzyme A synthetase [Hyphomicrobium sp. MC1]
Length = 525
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 81/216 (37%), Gaps = 64/216 (29%)
Query: 32 LPPRL------EFGCFVTSAISVCTVFVLLPKN---GPHKASSVGKPVRREMAIPDENGV 82
LPP++ FG V A + + N G K +VG E+AI D G
Sbjct: 306 LPPQVLSELEATFGAPVVEAYGMTEASHQMASNPIGGVRKPGTVGLAAGPEVAIMDTEGN 365
Query: 83 DQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------ 135
+ G++ IR + NN +AN AF GWF +GD G D+ + +
Sbjct: 366 LLQPGEVGEIVIRGDNVTSGYENNAKANGEAFTNGWFRTGDQGTIDADGYITITGRLKEI 425
Query: 136 ------KISPTEVDAV-----------------------------------------KEF 148
K+SP EVD V ++F
Sbjct: 426 INRGGEKVSPREVDEVLMDHPAVLQVVTFAVPHDKLGEDVAAAVVLREGQEATERELRDF 485
Query: 149 CKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++A +KVP+K+ + + K TGK+QR +A+
Sbjct: 486 ANEHLAHYKVPRKILLLPEIP-KGATGKLQRIGLAQ 520
>gi|23098513|ref|NP_691979.1| acyl-CoA synthetase [Oceanobacillus iheyensis HTE831]
gi|22776739|dbj|BAC13014.1| long-chain fatty-acid-CoA ligase [Oceanobacillus iheyensis HTE831]
Length = 535
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 34 PRLE-FGCFVTSAISVCTVFVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGK 91
P++E + C+ + ++ VL PK+ K S G P + + I D NG + + G+
Sbjct: 321 PQIELWNCYGQTEVAPLAT-VLQPKDQLRKLGSAGLPSLNVQTKIIDANGEEVARGIVGE 379
Query: 92 MCIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+ R M + E K AF+ GWF SGDLG+ D + + + VD K+
Sbjct: 380 IVHRTPHAMTGYLYATEKTKEAFKHGWFHSGDLGFMDEEGYITI-------VDRKKDMII 432
Query: 151 R---NVASFKVPKKVFIADSLS 169
NV+S +V + ++ D +S
Sbjct: 433 TGGVNVSSREVEEVIYEIDGVS 454
>gi|315056855|ref|XP_003177802.1| peroxisomal-coenzyme A synthetase [Arthroderma gypseum CBS 118893]
gi|311339648|gb|EFQ98850.1| peroxisomal-coenzyme A synthetase [Arthroderma gypseum CBS 118893]
Length = 514
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 84/211 (39%), Gaps = 59/211 (27%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
R + P LE +T A T L P G SVG E+ I D+NG +
Sbjct: 296 RAFKAPVLE-AYAMTEASHQMTSNPLPP--GKRMPGSVGIGQGVEVRILDDNGKEVPQGS 352
Query: 89 NGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGDLGYFDS----------QRCLNMW- 135
G++C+R E +NNP ANK++F + G+F +GD G D + +N
Sbjct: 353 EGEICVRGENVTKGYLNNPAANKSSFTKDGFFRTGDQGKKDPDGYVIITGRIKELINKGG 412
Query: 136 -KISPTEVDAV-----------------------------------------KEFCKRNV 153
KISP E+D V K V
Sbjct: 413 EKISPIELDNVIAQNPHVAEAVSFAIPDDMYGENIGVAVVLKKRGSISEDQLKSEIAPKV 472
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
A FK+P++++I + K TGKIQRR VAE
Sbjct: 473 AKFKIPQRIWILHEIP-KTATGKIQRRKVAE 502
>gi|255951198|ref|XP_002566366.1| Pc22g24780 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593383|emb|CAP99766.1| Pc22g24780 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 549
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 53/99 (53%), Gaps = 14/99 (14%)
Query: 65 SVGKPV-RREMAIPDENGVDQKA-NVNGKMCIREGPMVQ--RINNPEANKTAFQF-GWFL 119
SVG+ + E + DE+G + A V G++C+R GP V NNPEAN AF GWF
Sbjct: 353 SVGRLIPNLEAKLIDEDGKNISAFGVRGELCVR-GPTVTPGYFNNPEANSEAFDAEGWFK 411
Query: 120 SGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKV 158
+GD+ Y D QR W I VD KE K V F+V
Sbjct: 412 TGDIAYCD-QRT-RKWYI----VDRRKELIK--VRGFQV 442
>gi|7188335|gb|AAF37732.1|AF052221_1 4-coumarate--CoA ligase 4CL1 [Lolium perenne]
Length = 570
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR ++ + D + GV N+ G++CIR GP + +
Sbjct: 370 LSMCPAFAREPT--PAKSGSCGTVVRNAQLKVVDPDTGVSLGRNLPGEICIR-GPQIMKG 426
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+P A GW +GD+GY D + + VD VKE K F+VP
Sbjct: 427 YLNDPVATAATIDVEGWLHTGDIGYVDDDDEVFI-------VDRVKELIKFK--GFQVP 476
>gi|357021951|ref|ZP_09084182.1| acyl-CoA synthetase [Mycobacterium thermoresistibile ATCC 19527]
gi|356479699|gb|EHI12836.1| acyl-CoA synthetase [Mycobacterium thermoresistibile ATCC 19527]
Length = 527
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKT 111
+L P+ KA S G P + E A+ DE G G++ R P + + KT
Sbjct: 332 ILGPEEQESKAGSAGYPALNVETAVVDEAGSSVPPGTVGEIVHRS-PHLTLGYWRDDLKT 390
Query: 112 --AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLG+FD CL T VD K+ K NVAS +V + ++
Sbjct: 391 VEAFRDGWFHSGDLGFFDDDGCL-------TVVDRKKDMIKTGGENVASREVEEVIY 440
>gi|429216436|ref|YP_007174426.1| acyl-CoA synthetase [Caldisphaera lagunensis DSM 15908]
gi|429132965|gb|AFZ69977.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Caldisphaera
lagunensis DSM 15908]
Length = 558
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 60/193 (31%)
Query: 54 LLPKNGPHKASSVGKPVRREMA-IPDENGVDQKANVNGKMCIREGP--MVQRINNPEANK 110
LLP++ K + GK + + + D+NG + GP M+ + N E
Sbjct: 358 LLPEDHEKKPGTAGKELLNMITELMDDNGNIINEPYKPGEIVGRGPHTMLGYLKNEEKTL 417
Query: 111 TAFQFGWFLSGDLGYFDSQRCL-------NMWK-----ISPTEVD-------AVK----- 146
AF +GWF SGD+G +DS L +M K +S EV+ AVK
Sbjct: 418 EAFAYGWFHSGDIGMWDSDHYLYVVDRKKDMIKTGGENVSSREVEEVIYKHPAVKEVAVI 477
Query: 147 --------------------------------EFCKRNVASFKVPKKVFIADSLSGKPLT 174
E+ + N+A FK PK V DSL P +
Sbjct: 478 GLPDEKWIEKVTAIVVLKDGYEKSDKLKNEIIEYSRNNLAHFKAPKDVIFVDSLPKSP-S 536
Query: 175 GKIQRRIVAELRK 187
GKI +R + E+ K
Sbjct: 537 GKILKRELREMFK 549
>gi|421076303|ref|ZP_15537296.1| AMP-dependent synthetase and ligase [Pelosinus fermentans JBW45]
gi|392525685|gb|EIW48818.1| AMP-dependent synthetase and ligase [Pelosinus fermentans JBW45]
Length = 502
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFL 119
K SVGKP+R +AI ++NGV K N G + ++ M+Q N+ A + GW +
Sbjct: 317 KHGSVGKPIRGVSIAIKNKNGVRCKCNEIGMIYVKTRSAMLQYWNDDVATCRKYFNGWLM 376
Query: 120 SGDLGYFDSQ 129
+GDLGY D++
Sbjct: 377 TGDLGYMDNE 386
>gi|336396528|ref|ZP_08577927.1| Acyl-CoA synthetase family protein [Lactobacillus farciminis KCTC
3681]
Length = 505
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 35 RLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCI 94
R+ G +T S CT+ P + P K S GKP ++ I ++ + ++ G++ +
Sbjct: 297 RILEGYGMTETASQCTIN---PFDAP-KVGSAGKPFETDLGIMIDDQITKRPQQIGEIVV 352
Query: 95 REGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
R ++ +P +F+ GWFL+GDLGY D L
Sbjct: 353 RGDHVISDYLDPHPE--SFKNGWFLTGDLGYLDEDGYL 388
>gi|423583966|ref|ZP_17560057.1| hypothetical protein IIA_05461 [Bacillus cereus VD014]
gi|401206839|gb|EJR13623.1| hypothetical protein IIA_05461 [Bacillus cereus VD014]
Length = 493
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 75/187 (40%), Gaps = 54/187 (28%)
Query: 54 LLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKT 111
L P K SVGKP++ + I DE G++ + NG++ ++ + M +N P+ +
Sbjct: 304 LEPSMLQQKLGSVGKPIKGVTLKIVDEEGIEVGHDENGEIIVKGDNIMSGYLNMPDETEK 363
Query: 112 AFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD---------------- 143
+ W +GD+GY DS + + ++ISP E++
Sbjct: 364 VLKDRWLYTGDIGYKDSDGYIYIIRRKNDIIKYLGYRISPVEIENYINMHDNILESAVVE 423
Query: 144 -----------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+ + ++ + S+K+P ++ D L K GKI+R
Sbjct: 424 CRKEENVKIAAVIVLKNEKLDINDLSQILRKKLPSYKIPSIIYTVDKLP-KTSNGKIKRS 482
Query: 181 IVAELRK 187
+ E+ K
Sbjct: 483 ELKEMLK 489
>gi|119188141|ref|XP_001244677.1| hypothetical protein CIMG_04118 [Coccidioides immitis RS]
gi|392871393|gb|EAS33304.2| coenzyme A synthetase [Coccidioides immitis RS]
Length = 514
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 56/175 (32%)
Query: 65 SVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGD 122
SVG ++ I D G + G++CIR E +NNP ANK++F + G+F +GD
Sbjct: 329 SVGIRQGVDVRILDSEGNEVSQGTEGEICIRGENVTKGYLNNPTANKSSFTKGGFFRTGD 388
Query: 123 LGYFDSQRCLNMW------------KISPTEVD--------------------------- 143
G D + + KISP E+D
Sbjct: 389 QGKKDKDGYVYITGRIKELINKGGEKISPIELDNVITQNPHVAEAVSFAIPDQIYGEDIG 448
Query: 144 --------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
A+K VA FKVPKK++I + K TGKIQRR VAE
Sbjct: 449 VAVVLKKRGSISEGALKAELAPKVAKFKVPKKIWILLEIP-KTATGKIQRRKVAE 502
>gi|90417333|ref|ZP_01225259.1| putative fatty-acid--coa ligase transmembrane protein [gamma
proteobacterium HTCC2207]
gi|90330918|gb|EAS46181.1| putative fatty-acid--coa ligase transmembrane protein [marine gamma
proteobacterium HTCC2207]
Length = 508
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 59/176 (33%)
Query: 61 HKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K S G+P + ++ I D A +G++C+R GP V + N PEA A G
Sbjct: 326 EKVGSAGRPPMFTDVRIVDGENNPLPAGEHGEVCVR-GPNVLKGYWNRPEATADAIDAQG 384
Query: 117 WFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------------------- 145
WF SGD+GYFD+Q L + I P EV+++
Sbjct: 385 WFHSGDIGYFDNQGYLFLCDRVKDMVISGGENIYPAEVESILYGHSSVVEVAVIGLPDEK 444
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+EF +++A +K+P +++ D L P GK+Q+
Sbjct: 445 WGEAVTAVAVLKQDATLDLEELREFASQSLAKYKLPSRLYFLDELPRNP-AGKVQK 499
>gi|228914550|ref|ZP_04078159.1| Feruloyl-CoA synthetase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228844869|gb|EEM89911.1| Feruloyl-CoA synthetase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
Length = 496
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDSQ 129
+A K Q GW +GDL D +
Sbjct: 362 DATKETIQDGWLYTGDLAKVDEE 384
>gi|255557999|ref|XP_002520028.1| AMP dependent CoA ligase, putative [Ricinus communis]
gi|223540792|gb|EEF42352.1| AMP dependent CoA ligase, putative [Ricinus communis]
Length = 573
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR E+ + D E G N G++CIR GP + +
Sbjct: 372 LSMCLGFAKQP--FPTKSGSCGTVVRNAELKVIDPETGCSLGYNQPGEICIR-GPQIMKG 428
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA GW +GD+GY D + + VD VKE K F+VP
Sbjct: 429 YLNDPEATANTIDVEGWLHTGDIGYVDDDDEIFI-------VDRVKEIIK--FKGFQVP 478
>gi|303316532|ref|XP_003068268.1| Peroxisomal-coenzyme A synthetase, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240107949|gb|EER26123.1| Peroxisomal-coenzyme A synthetase, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 513
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 70/175 (40%), Gaps = 56/175 (32%)
Query: 65 SVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFLSGD 122
SVG ++ I D G + G++CIR E +NNP ANK++F + G+F +GD
Sbjct: 329 SVGIGQGVDVRILDSEGNEVSQGTEGEICIRGENVTKGYLNNPTANKSSFTKGGFFRTGD 388
Query: 123 LGYFDSQRCLNMW------------KISPTEV---------------------------- 142
G D + + KISP E+
Sbjct: 389 QGKKDKDGYVYITGRIKELINKGGEKISPIELDNVITQNPHVAEAVSFAIPDQIYGEDIG 448
Query: 143 -------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
DA+K VA FKVPKK++I + K TGKIQRR VAE
Sbjct: 449 VAVVLKKRGSISEDALKAELAPKVAKFKVPKKIWILLEIP-KTATGKIQRRKVAE 502
>gi|422654421|ref|ZP_16717163.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330967446|gb|EGH67706.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 562
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 66/205 (32%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++ + L + G +VG P+ M + D+ GV+ G++CI+
Sbjct: 365 YGLTETSPVASANPYGALARLG-----TVGIPLPGTAMKVIDDEGVELAFGERGELCIK- 418
Query: 97 GPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISPTE 141
GP V + N P+A + GWF +GD+ D++ +++ + + P E
Sbjct: 419 GPQVMKGYWNRPDATAESLDAEGWFKTGDVAVIDAEGFVSIVDRKKDLIIVSGFNVYPNE 478
Query: 142 VDAV----------------------------------------KEFCKRNVASFKVPKK 161
++ V K FCK N ++KVPK
Sbjct: 479 IEDVIMAHPKVANCACIGVPDERSGEAVKLFVVPRDPSVSVEELKAFCKENFTAYKVPKL 538
Query: 162 VFIADSLSGKPLTGKIQRRIVAELR 186
+ + DSL P+ GKI RR ELR
Sbjct: 539 IVLRDSLPMTPV-GKILRR---ELR 559
>gi|441516862|ref|ZP_20998606.1| putative fatty-acid--CoA ligase [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441456328|dbj|GAC56567.1| putative fatty-acid--CoA ligase [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 530
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
+L P S G+P + E+ I D+ V A G++ R + N+P+
Sbjct: 334 ILGPDEQLPAPGSAGRPALNVEVRIVDDENVPVPAGSVGEIVHRSPHATLGYYNDPDKTA 393
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF GWF SGDLGYFD Q L + VD K+ K NVAS +V + ++
Sbjct: 394 EAFTGGWFHSGDLGYFDEQGRLYV-------VDRKKDMIKTGGENVASREVEEAIY 442
>gi|300313115|ref|YP_003777207.1| long-chain-fatty-acid-CoA ligase [Herbaspirillum seropedicae SmR1]
gi|300075900|gb|ADJ65299.1| long-chain-fatty-acid-CoA ligase protein [Herbaspirillum
seropedicae SmR1]
Length = 556
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 31 YLPPRLEF--GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
+LPP L F + + C +P+ G ++AI +++G +
Sbjct: 354 FLPPYLHFEDDAHPQARVGTCG----MPRTG------------MQIAILNDDGQELAPFE 397
Query: 89 NGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
G++C+R GP V NNPEAN AF+ WF +GDLG+ D L
Sbjct: 398 TGEICVR-GPAVFMGYHNNPEANAKAFKHDWFHTGDLGHVDQDGFL 442
>gi|386838307|ref|YP_006243365.1| long-chain-fatty-acid-CoA ligase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374098608|gb|AEY87492.1| putative long-chain-fatty-acid-CoA ligase [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451791599|gb|AGF61648.1| putative long-chain-fatty-acid-CoA ligase [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 502
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R LP + CF S I VL P + S G+PV + + DE+G D A
Sbjct: 288 RERLPELGFYNCFGQSEIGPLAT-VLAPDEHQGRMDSCGRPVLFVDARVVDEDGKDVPAG 346
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + + PE AF+ GWF SGDL D+ + VD VK
Sbjct: 347 TPGEIVYRSPQLCEGYWDKPEETAEAFRDGWFHSGDLAVRDADGYFTI-------VDRVK 399
Query: 147 EFCKRN---VASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ VAS +V ++ ++++ + G R +
Sbjct: 400 DVINSGGVLVASRQVEDALYTHEAVAEAAVVGLPDERWI 438
>gi|422591412|ref|ZP_16666056.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878890|gb|EGH13039.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 562
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 66/205 (32%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++ + L + G +VG P+ M + D+ GV+ G++CI+
Sbjct: 365 YGLTETSPVASANPYGALARLG-----TVGIPLPGTAMKVIDDEGVELAFGERGELCIK- 418
Query: 97 GPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISPTE 141
GP V + N P+A + GWF +GD+ D++ +++ + + P E
Sbjct: 419 GPQVMKGYWNRPDATAESLDAEGWFKTGDVAVIDAEGFVSIVDRKKDLIIVSGFNVYPNE 478
Query: 142 VDAV----------------------------------------KEFCKRNVASFKVPKK 161
++ V K FCK N ++KVPK
Sbjct: 479 IEDVIMAHPKVANCACIGVPDERSGEAVKLFVVPRDPSVSVEELKAFCKENFTAYKVPKL 538
Query: 162 VFIADSLSGKPLTGKIQRRIVAELR 186
+ + DSL P+ GKI RR ELR
Sbjct: 539 IVLRDSLPMTPV-GKILRR---ELR 559
>gi|242081643|ref|XP_002445590.1| hypothetical protein SORBIDRAFT_07g022040 [Sorghum bicolor]
gi|241941940|gb|EES15085.1| hypothetical protein SORBIDRAFT_07g022040 [Sorghum bicolor]
Length = 552
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+S+C F P P K+ + G VR E+ I D + G+ + N G++CIR +++
Sbjct: 348 LSMCMAFAKEPL--PVKSGACGTVVRNAELKIVDPDTGLSLRRNQPGEICIRGKQLMKGY 405
Query: 103 INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+NNPEA KT GW +GD+GY D + + VD +KE K
Sbjct: 406 LNNPEATAKTIDDEGWLHTGDIGYVDDDDEIFI-------VDRLKELIK 447
>gi|423460128|ref|ZP_17436925.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BAG5X2-1]
gi|401141696|gb|EJQ49249.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BAG5X2-1]
Length = 496
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 7 SIHGA----AQLTITPYTNVFLFYKG---------RVYLPPRLEFGCFVTSAISVCTVFV 53
+IH A A+ T +V FY G R ++ FG + TVF+
Sbjct: 247 TIHQALINCAKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFM 306
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANK 110
L ++ K S+GKPV E + DEN + G++ IR GP M + N P+A +
Sbjct: 307 LSEEDARRKVGSIGKPVLFCEYVLIDENKNKVEVGEVGELLIR-GPNVMKEYWNRPDATE 365
Query: 111 TAFQFGWFLSGDLGYFDS 128
Q GW +GDL D
Sbjct: 366 ETIQDGWLYTGDLAKVDE 383
>gi|359786360|ref|ZP_09289495.1| acyl-CoA synthetase [Halomonas sp. GFAJ-1]
gi|359296210|gb|EHK60463.1| acyl-CoA synthetase [Halomonas sp. GFAJ-1]
Length = 517
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 73/198 (36%), Gaps = 57/198 (28%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE 96
+ C+ S I+ VL P+ + +S G+P+ E I D + D +G++ R
Sbjct: 314 YNCYGQSEIAPLAT-VLRPEEHAERPASAGRPILTVETRIVDLDMNDVAPGEHGEIVHRS 372
Query: 97 GP-MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM--------------------- 134
M + P+ AFQ WF SGD+GYFD L +
Sbjct: 373 PQLMTGYWDKPDMTAEAFQSDWFHSGDVGYFDEAGYLYVVDRIKDVINTGGVLVASREVE 432
Query: 135 ---------------------WKISPTEVDAVKE-----------FCKRNVASFKVPKKV 162
W + T V VKE K +A +KVPK+V
Sbjct: 433 EALFKHTAISEVAVVGLPDEKWIEAITAVVVVKEGQKVSEDELIHHAKSLIAPYKVPKRV 492
Query: 163 FIADSLSGKPLTGKIQRR 180
AD+L K GKI +R
Sbjct: 493 VFADTLP-KSTAGKILKR 509
>gi|240280045|gb|EER43549.1| peroxisomal-coenzyme A synthetase [Ajellomyces capsulatus H143]
gi|325088766|gb|EGC42076.1| peroxisomal CoA synthetase [Ajellomyces capsulatus H88]
Length = 513
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + +VG E+ I E+G + G++CIR E +NNP AN+++F + G
Sbjct: 322 GKRQPGTVGIGQGVEVKILGEDGNEVPQGSEGEICIRGENVTKGYLNNPAANESSFTKSG 381
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVD--------------------- 143
+F +GD G D + +N KISP E+D
Sbjct: 382 FFRTGDRGKKDKDGYIFITGRIKELINKGGEKISPIELDNTIAYHPNVAEAVSFAIPDPH 441
Query: 144 --------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
+K + VA FK+PKK++I + K TGKIQRR VA
Sbjct: 442 YGEDIGVAVVLKKGGNLSEDMLKSWIAPKVAKFKIPKKIWILSEIP-KTATGKIQRRKVA 500
Query: 184 E 184
E
Sbjct: 501 E 501
>gi|425901045|ref|ZP_18877636.1| long-chain-fatty-acid--CoA ligase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883891|gb|EJL00378.1| long-chain-fatty-acid--CoA ligase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 562
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 77/207 (37%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCI 94
GC +T + V P + SVG PV + + D+ GV+Q G++CI
Sbjct: 358 GCRITEGYGLTETSPVACTNPYGDQSRLGSVGLPVPGTTLKVIDDEGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + PEA + GWF SGD+ D + + + + P
Sbjct: 418 K-GPQIMKGYWQKPEATEEVLDAEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N +KVP
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARESGVSLEELKAYCKENFTGYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|342878688|gb|EGU79996.1| hypothetical protein FOXB_09526 [Fusarium oxysporum Fo5176]
Length = 515
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 72/178 (40%), Gaps = 56/178 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCI-REGPMVQRINNPEANKTAF-QFGWFL 119
KA +VG E+ I +E G + G++CI E +NNP AN +++ + G+F
Sbjct: 329 KAGTVGIGQGVEVRILNEQGEEVPQGSEGEICIIGENVTKGYLNNPSANASSYHKNGFFR 388
Query: 120 SGDLGYFDS----------QRCLNMW--KISPTEVDAV---------------------- 145
+GD G D + +N KISP E+D V
Sbjct: 389 TGDQGKKDEDGYIIITGRIKELINKGGEKISPIELDNVLTRHPKISEAVSFAIPDEVYGQ 448
Query: 146 -------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K + A FKVPKK++ + + K TGKIQRRIVAE
Sbjct: 449 DIGVAVVLKNGEKLTAEELKAWVAERSAKFKVPKKIYFTEIMP-KTATGKIQRRIVAE 505
>gi|226292996|gb|EEH48416.1| 4-coumarate-CoA ligase [Paracoccidioides brasiliensis Pb18]
Length = 512
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 74/181 (40%), Gaps = 56/181 (30%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFG 116
G + +VG E+ I D++G + G++C+R E +NNP AN ++F + G
Sbjct: 321 GKRQPGTVGIGQGVEVKILDQDGNEVPQGSEGEICVRGENVTKGYLNNPAANDSSFTKSG 380
Query: 117 WFLSGDLGYFDS----------QRCLNMW--KISPTEVDAV------------------- 145
+F +GD G D + +N KISP E+D +
Sbjct: 381 FFRTGDQGKKDKDGYVFITGRIKELINKGGEKISPIELDNIIAHNPNVAEAVSFAIPDAH 440
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K + VA FK+PKK++I + K TGKIQRR VA
Sbjct: 441 YGEDIGVAVVLKQKGSMSEDNLKSWIAPKVAKFKIPKKIWILPEIP-KTATGKIQRRKVA 499
Query: 184 E 184
E
Sbjct: 500 E 500
>gi|47568327|ref|ZP_00239029.1| fadD13 [Bacillus cereus G9241]
gi|47555020|gb|EAL13369.1| fadD13 [Bacillus cereus G9241]
Length = 496
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDSQ 129
+A K Q GW +GDL D +
Sbjct: 362 DATKETIQDGWLYTGDLARVDEE 384
>gi|399006829|ref|ZP_10709349.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM17]
gi|398121487|gb|EJM11115.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM17]
Length = 562
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 77/207 (37%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCI 94
GC +T + V P + SVG PV + + D+ GV+Q G++CI
Sbjct: 358 GCRITEGYGLTETSPVACTNPYGDQSRLGSVGLPVPGTTLKVIDDEGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + PEA + GWF SGD+ D + + + + P
Sbjct: 418 K-GPQIMKGYWQKPEATEEVLDAEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N +KVP
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARESGVSLEELKAYCKENFTGYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|387316217|gb|AFJ73463.1| 4-coumarate: coenzyme A ligase, partial [Torreya californica]
Length = 457
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 36 LEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMC 93
L G +T A + T V K P S G VR EM I D G+ N G++C
Sbjct: 309 LAQGYGMTEAGPLATSLVFAKKPFPANPGSCGTVVRNAEMKIIDPHTGLSLPHNQRGEIC 368
Query: 94 IREGPMVQR--INNPEANKTAF-QFGWFLSGDLGYFDSQRCLNM------------WKIS 138
IR GP + + +NN EA + + GW +GD+GY D L + ++++
Sbjct: 369 IR-GPQIMKGYLNNDEATEQIIDKHGWLHTGDIGYMDDNEELFVVDRLKELIKYKGFQVA 427
Query: 139 PTEVDAVKEFCKRNVASFKVPKK 161
P E++A+ + VPKK
Sbjct: 428 PAELEAILVKHPSIADAAVVPKK 450
>gi|229155539|ref|ZP_04283647.1| Feruloyl-CoA synthetase [Bacillus cereus ATCC 4342]
gi|228627857|gb|EEK84576.1| Feruloyl-CoA synthetase [Bacillus cereus ATCC 4342]
Length = 496
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDSQ 129
+A K Q GW +GDL D +
Sbjct: 362 DATKETIQDGWLYTGDLARVDEE 384
>gi|365892410|ref|ZP_09430713.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. STM
3809]
gi|365331543|emb|CCE03244.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. STM
3809]
Length = 516
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V L ++ KA S GKPV E+ I +G D G++ +R GP V N P+
Sbjct: 314 VLALDREDAARKAGSAGKPVLHTEVRIVRPDGSDADIGELGELWVR-GPNVTPGYWNRPD 372
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEV-------DAVKE- 147
AN+++F GW +GD D + ++ WK + P EV DAV E
Sbjct: 373 ANRSSFTDGWLHTGDATRVDDEGFYYIVDRWKDMYISGGENVYPAEVESVLHRLDAVAEA 432
Query: 148 ---------------------------------FCKRNVASFKVPKKVFIADSLSGKPLT 174
C+ N+A FK P+ V D+L + T
Sbjct: 433 AVIGIADSQWGETGMAIIAVKPGHSLSEAEIIAHCQANLARFKCPRTVRFVDALP-RNAT 491
Query: 175 GKIQR 179
GKI +
Sbjct: 492 GKIHK 496
>gi|228985053|ref|ZP_04145221.1| Feruloyl-CoA synthetase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228774741|gb|EEM23139.1| Feruloyl-CoA synthetase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 496
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDSQ 129
+A K Q GW +GDL D +
Sbjct: 362 DATKETIQDGWLYTGDLARVDEE 384
>gi|134055215|emb|CAK43802.1| unnamed protein product [Aspergillus niger]
Length = 501
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 77 PDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM 134
PD + + + G++C+R + M ++NP+AN+ AF F G+F +GDLG L +
Sbjct: 364 PDAGRLTNEPGIVGEICVRGKSIMTGYLDNPKANEQAFLFGGFFRTGDLGVVKEHGYLQL 423
Query: 135 W------------KISPTEVDAVKEFCK--RNVASFKVPKKVF 163
KISP+E++ V + R F++P +++
Sbjct: 424 TGRIKEIINKGGEKISPSEIEHVASSFEGVRESVCFRIPDEIY 466
>gi|260907359|ref|ZP_05915681.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Brevibacterium linens BL2]
Length = 513
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 24 LFYKGRVYLPPRLEFGCFVTSAIS-VCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENG 81
+ K R LP + CF S + +CTV L P+ ASS G+ V E + D G
Sbjct: 298 VLAKLRQRLPKLGFYNCFGQSEMGPLCTV--LRPEEHDDHASSAGRSVFFVETRVVDGEG 355
Query: 82 VDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPT 140
D G++ R + Q N PEA AF GWF SGDL D + +
Sbjct: 356 NDVGVGEQGEILYRSPQLCQGYWNKPEATAEAFDNGWFHSGDLVTVDESGFIEV------ 409
Query: 141 EVDAVKEFCKRN---VASFKVPKKVF 163
+D VK+ VAS +V +F
Sbjct: 410 -IDRVKDVINTGGVLVASRQVEDAIF 434
>gi|317034796|ref|XP_001401186.2| AMP-binding enzyme [Aspergillus niger CBS 513.88]
Length = 549
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 49 CTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVD-QKANVNGKMCIREGPMVQ--RIN 104
C + + + + SVG+ V E + D+NG D V G++C+R GP V N
Sbjct: 337 CCIATMFRWDEGDETGSVGRLVPNMEAKLVDDNGTDISDYGVRGELCVR-GPAVTPGYFN 395
Query: 105 NPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKV 158
NP AN +F + GWF +GD+ Y D W I VD KE K V F+V
Sbjct: 396 NPVANAESFDEQGWFHTGDIAYCDC--ATQKWYI----VDRKKELIK--VRGFQV 442
>gi|254788331|ref|YP_003075760.1| AMP-binding enzyme [Teredinibacter turnerae T7901]
gi|237687273|gb|ACR14537.1| AMP-binding enzyme [Teredinibacter turnerae T7901]
Length = 485
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 83/217 (38%), Gaps = 59/217 (27%)
Query: 21 NVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDE 79
N F + + +P R +G T A+S+ T K SVGK + + I DE
Sbjct: 275 NTFQKFLAKYDVPIRQLYGSTETGAMSLNT-----GSTTGDKWRSVGKALANVHITIRDE 329
Query: 80 NGVDQKANVNGKMCIREGPMVQRINN-PEANKTAFQFGWFLSGDLGYFDSQRCLNMW--- 135
+G ANV G++ I M + N EA + +F+ F +GDLG+ D+ L +
Sbjct: 330 SGALLPANVAGEIVIHSNAMTRGYANLAEATRESFRDNLFYTGDLGFLDADGYLTITGRK 389
Query: 136 ---------KISPTEVDA---------------------------------------VKE 147
K+ P E++ +++
Sbjct: 390 KFFINAAGNKVDPGEIEQLIAAHPNVDEVVVVGVKSEYGLEVIKAAVVAKGPITEQDIRD 449
Query: 148 FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
C VA FKVP+ + + + PL GK+ R+ + E
Sbjct: 450 CCIGKVADFKVPRIIEFREEIPKSPL-GKVLRKYLVE 485
>gi|254516640|ref|ZP_05128699.1| long-chain-fatty-acid--CoA ligase [gamma proteobacterium NOR5-3]
gi|219675063|gb|EED31430.1| long-chain-fatty-acid--CoA ligase [gamma proteobacterium NOR5-3]
Length = 566
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 62 KASSVGKPVR--REMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAFQFGWF 118
+ S G PV ++AI DE+ A G++CI + N PEA AF+ GWF
Sbjct: 379 RPGSAGPPVPAVTDIAIFDEHDKPVAAGERGEVCIHSPANCLGYWNKPEATAEAFRDGWF 438
Query: 119 LSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKR---NVASFKVPKKVFIADSLSGKPLTG 175
+GD+GY D + L + VD +KE R N++ +V ++ S+S + G
Sbjct: 439 HTGDVGYIDEEGFLFI-------VDRMKEIIIRGGENISCIEVEAGIYQHPSVSEAAVYG 491
Query: 176 KIQRRI 181
R+
Sbjct: 492 VPDERL 497
>gi|134081869|emb|CAK42124.1| unnamed protein product [Aspergillus niger]
Length = 547
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 49 CTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVD-QKANVNGKMCIREGPMVQ--RIN 104
C + + + + SVG+ V E + D+NG D V G++C+R GP V N
Sbjct: 335 CCIATMFRWDEGDETGSVGRLVPNMEAKLVDDNGTDISDYGVRGELCVR-GPAVTPGYFN 393
Query: 105 NPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKV 158
NP AN +F + GWF +GD+ Y D W I VD KE K V F+V
Sbjct: 394 NPVANAESFDEQGWFHTGDIAYCDC--ATQKWYI----VDRKKELIK--VRGFQV 440
>gi|441146970|ref|ZP_20964359.1| substrate-CoA ligase [Streptomyces rimosus subsp. rimosus ATCC
10970]
gi|440620427|gb|ELQ83457.1| substrate-CoA ligase [Streptomyces rimosus subsp. rimosus ATCC
10970]
Length = 529
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 77 PDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQ-FGWFLSGDLGYFDSQRCLN 133
P+ +A V G++C+R GP V NNPEA AF GWF SGD+GY D L+
Sbjct: 353 PETGATVTEARVPGEVCVR-GPHVTPGYWNNPEATAAAFDCSGWFHSGDIGYLDEGGLLH 411
Query: 134 M 134
+
Sbjct: 412 I 412
>gi|374619756|ref|ZP_09692290.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [gamma
proteobacterium HIMB55]
gi|374302983|gb|EHQ57167.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [gamma
proteobacterium HIMB55]
Length = 509
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 54 LLPKNGPHKASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L P+ K S G PV E+ I D N + N G++C++ GP + + N PEA
Sbjct: 321 LGPERCLEKLGSAGLSPVLTELRIVDANNISVAPNERGEICVK-GPNIMKGYWNRPEATA 379
Query: 111 TAFQF-GWFLSGDLGYFDSQRCL 132
A GWF SGD+GY D + L
Sbjct: 380 KAIDAEGWFHSGDVGYLDEEGYL 402
>gi|118589991|ref|ZP_01547395.1| acyl-CoA synthase [Stappia aggregata IAM 12614]
gi|118437488|gb|EAV44125.1| acyl-CoA synthase [Stappia aggregata IAM 12614]
Length = 526
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVGKPVRR--EMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V ++GP S R E++I DE+G N G++C+ +
Sbjct: 321 VTGNITVLRPQDHFLEDGPQTRSGTCGTERTGIEVSIQDEDGNLLPPNETGEVCVIGAAV 380
Query: 100 -VQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
+++ +ANK +F+ GWF +GD+G+ D QR L
Sbjct: 381 CAGYLDDDDANKKSFRNGWFRTGDIGHMDEQRYL 414
>gi|302529879|ref|ZP_07282221.1| O-succinylbenzoate-CoA ligase [Streptomyces sp. AA4]
gi|302438774|gb|EFL10590.1| O-succinylbenzoate-CoA ligase [Streptomyces sp. AA4]
Length = 480
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 54 LLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L P GP K +VG+P+ +E+A+ D G + G++ +R GP V R +N PEA
Sbjct: 291 LNPLAGPRKPGTVGRPLPGQEVALMDPQG-RLVTDGPGEVVVR-GPNVMRGYLNRPEATA 348
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN 152
A GW +GD+G FD L + VD +K+ R
Sbjct: 349 AAIVDGWLHTGDVGRFDEDGYLVL-------VDRIKDMIIRG 383
>gi|300863532|ref|ZP_07108484.1| AMP-dependent synthetase and ligase [Oscillatoria sp. PCC 6506]
gi|300338488|emb|CBN53626.1| AMP-dependent synthetase and ligase [Oscillatoria sp. PCC 6506]
Length = 520
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 58/180 (32%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGW 117
+K S+G P+ EM + D G + G++ IR GP M N P GW
Sbjct: 340 YKPGSIGMPIDNVEMKVVDTEGSEVDVGEVGEIIIR-GPNVMSSYWNRPAETAEVMSNGW 398
Query: 118 FLSGDLGYFDSQ----------RCLNM--WKISPTEVD-------AVKE----------- 147
F +GDLG D + +N+ +K+ P+E++ AV E
Sbjct: 399 FHTGDLGRMDEEGYFYIVDRLKDTINVSGFKVYPSELERVISQHPAVAEVAICGVPDKVK 458
Query: 148 -----------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
FC + +A++KVP V D+L K TGK+ RR++ E
Sbjct: 459 GESILANIVLNNGQVVAPEDVISFCSKQIAAYKVPHLVRFVDALP-KNATGKVLRRVLRE 517
>gi|311108066|ref|YP_003980919.1| AMP-binding protein [Achromobacter xylosoxidans A8]
gi|310762755|gb|ADP18204.1| AMP-binding enzyme family protein 22 [Achromobacter xylosoxidans
A8]
Length = 497
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 60/210 (28%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKAN 87
RV+ R G +T S T+ + P K S G+ + E+ I D+ G A
Sbjct: 286 RVFTRGRFIDGFGMTETCSGDTL--MEPGREIEKIGSTGRALPHVEIRIADDEGRWLPAG 343
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW--- 135
G++C+R GP V + N PE AF W SGD+GY D + R +M
Sbjct: 344 EKGEICVR-GPKVTKGYWNAPEKTAEAFFGDWLRSGDVGYLDEEGFLFVTDRTKDMILTG 402
Query: 136 --KISPTEVDAV-----------------------------------------KEFCKRN 152
++ +EV+AV +C++
Sbjct: 403 AENVASSEVEAVLYEMPQIAEAAVIGVHDEQWGERITAVVVLNPGQTLTLEELAGYCRKR 462
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
VA+FKVP+++ + + L P +GK+ +R++
Sbjct: 463 VANFKVPRELKVVEELPRNP-SGKVLKRVL 491
>gi|288560289|ref|YP_003423775.1| AMP-binding enzyme [Methanobrevibacter ruminantium M1]
gi|288542999|gb|ADC46883.1| AMP-binding enzyme [Methanobrevibacter ruminantium M1]
Length = 494
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 60/186 (32%)
Query: 42 VTSAISVCTVFVLLPKN--GPHKASSVGKPV-RREMAIPDENGVDQKAN--VNGKMCIRE 96
++ +I + T V+ P++ + SVG PV E+ I DE+ ++ + +G++ +R
Sbjct: 291 LSESIVIGTGTVIRPEDYATADRYESVGHPVCFSELKIVDEDDPNKTLDKYEHGEIALR- 349
Query: 97 GPMVQRIN---NPEANKTAFQFGWFLSGDLGYFDSQR------------CLNMWKISPTE 141
GP + + E ++ + GWFL+GD+GY D ++ WKI PTE
Sbjct: 350 GPAIAKGYWGMEKETKESFLEDGWFLTGDIGYIDEDNRLFITDRKKDMIVMSGWKIYPTE 409
Query: 142 V---------------------------------------DAVKEFCKRNVASFKVPKKV 162
V + + E+ + +A +KVP+K+
Sbjct: 410 VEETLIKYPKVDEIAIFSINDIHRGELPVAAVVWKEDEDPEGLLEYSREYLARYKVPRKI 469
Query: 163 FIADSL 168
F D L
Sbjct: 470 FTMDEL 475
>gi|126635325|dbj|BAF48390.1| luciferase [Photinus pyralis]
Length = 550
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGDL Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDLAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|254582599|ref|XP_002499031.1| ZYRO0E01936p [Zygosaccharomyces rouxii]
gi|238942605|emb|CAR30776.1| ZYRO0E01936p [Zygosaccharomyces rouxii]
Length = 535
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 73/182 (40%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P E+ I DE G++ IR E NN +AN F +
Sbjct: 346 GKRKPGTVGQPQGVEIVILDEKDNKLPQGKIGEVSIRGENVTPGYANNAKANLENFTRRE 405
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVD-------AVKE--------- 147
+F +GD G+FD + L + KISP E+D AVKE
Sbjct: 406 NYFRTGDQGFFDQEGFLVLTGRIKELINRGGEKISPIELDGAMLSHPAVKEAVSYGVPDE 465
Query: 148 -------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
K+ V+++KVP + AD L K TGKIQRRI+
Sbjct: 466 KYGQAVHAAVVLESGKTLTPQDLADHMKQRVSAYKVPVEFNFADKLP-KTATGKIQRRII 524
Query: 183 AE 184
AE
Sbjct: 525 AE 526
>gi|126635333|dbj|BAF48394.1| luciferase [Photinus pyralis]
Length = 550
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGDL Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDLAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|398841045|ref|ZP_10598272.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM102]
gi|398109310|gb|EJL99248.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM102]
Length = 562
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 61/206 (29%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCI 94
GC +T + V P + +VG PV + + ++ GV+Q G++CI
Sbjct: 358 GCRITEGYGLTETSPVACTNPYGDKSRIGTVGLPVPGTTLKVINDEGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFD------------SQRCLNMWKISP 139
+ GP + + PEA GWF SGD+G D ++ + + P
Sbjct: 418 K-GPQIMKGYWQKPEATDEVLDADGWFKSGDIGVIDLDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N ++KVP
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARESGVSLEELKAYCKENFTAYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAEL 185
K + + +SL P+ GKI RR + E+
Sbjct: 537 KHIVLRESLPMTPV-GKILRRELREI 561
>gi|284009930|dbj|BAI66600.1| luciferase [Pyrophorus angustus luscus]
Length = 543
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+GK P + G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGKVTPFMAVKIVDRNTGEALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDADG 413
Query: 117 WFLSGDLGYFDSQRCLNM------------WKISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D + ++++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDDDEHFYVVDRYKELIKYKGYQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|257064452|ref|YP_003144124.1| acyl-CoA synthetase/AMP-acid ligase [Slackia heliotrinireducens DSM
20476]
gi|256792105|gb|ACV22775.1| acyl-CoA synthetase/AMP-acid ligase [Slackia heliotrinireducens DSM
20476]
Length = 589
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 36/191 (18%)
Query: 21 NVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDE 79
++F F+K + L FG + ++V + +PK G S+G+P + I E
Sbjct: 360 DLFAFWKEKTGLTIFEGFGQ-TETPLTVANLTNSVPKPG-----SMGRPSPLYTVEIKRE 413
Query: 80 NGVDQKANVNGKMCIREGP-----MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL-- 132
+G K G++CI+ P M++ NPE A GW+ +GD + D
Sbjct: 414 DGSRCKTGETGEICIKMDPRPAGIMMEYYRNPEKTAEAIHDGWYHTGDTAWCDEHGLFWY 473
Query: 133 ----------NMWKISPTEV-------DAVKEFCKRNVAS----FKVPKKVFIADSLSG- 170
+ ++I P E+ DAV+E V F V V +AD G
Sbjct: 474 VGRNDDVIKSSGYRIGPFEIESVMLEHDAVRECAVTGVPDPLRGFAVKATVVLADGFKGS 533
Query: 171 KPLTGKIQRRI 181
LT ++QR +
Sbjct: 534 DALTAELQRWV 544
>gi|162463359|ref|NP_001105258.1| LOC542166 [Zea mays]
gi|45549453|gb|AAS67644.1| 4-coumarate coenzyme A ligase [Zea mays]
Length = 555
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+++C F P P K+ S G VR E+ I D + G N G++CIR E M
Sbjct: 356 LAMCLAFAKEPY--PVKSGSCGTVVRNAELKIVDPDTGAALGRNQPGEICIRGEQIMKGY 413
Query: 103 INNPEANK-TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PE+ K T Q GW +GD+GY D + + VD +KE K F+VP
Sbjct: 414 LNDPESTKNTIDQDGWLHTGDIGYVDDDDEIFI-------VDRLKEIIKYK--GFQVP 462
>gi|154246745|ref|YP_001417703.1| acyl-CoA synthetase [Xanthobacter autotrophicus Py2]
gi|154160830|gb|ABS68046.1| AMP-dependent synthetase and ligase [Xanthobacter autotrophicus
Py2]
Length = 556
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 59/200 (29%)
Query: 42 VTSAISVCTVFVLLPKNGPH-KASSVG-KPVRREMAIPDENGVDQKANVNGKMCIREGPM 99
VT I+V + P++GP K + G + ++ I ++ G + + G++C+ GP
Sbjct: 342 VTGNITVLPPALHDPEDGPSVKLGTCGFERTGIQVQIQNDMGEEVQPFETGEICVC-GPA 400
Query: 100 V--QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVD-- 143
V +NPEAN AF+ GWF +GDLG+ DS+ R +M+ + P EV+
Sbjct: 401 VFAGYYDNPEANAKAFRDGWFRTGDLGHMDSEGFVYITGRASDMYISGGSNVYPREVEEK 460
Query: 144 -----AVKE----------------------------------FCKRNVASFKVPKKVFI 164
AV E F VA +K+P++V
Sbjct: 461 VLTHPAVAEVAILGVPDPMWGEVGVAVCVLREGASLAEDELIAFLDGKVARYKMPRRVHF 520
Query: 165 ADSLSGKPLTGKIQRRIVAE 184
D+L K GKI +++V E
Sbjct: 521 WDALP-KSAYGKITKKMVRE 539
>gi|389879361|ref|YP_006372926.1| acyl-CoA synthase [Tistrella mobilis KA081020-065]
gi|388530145|gb|AFK55342.1| acyl-CoA synthase [Tistrella mobilis KA081020-065]
Length = 512
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE 96
+ C+ S I VL P + +S G+PV E I D D V G++ R
Sbjct: 307 YNCYGQSEIGPLAT-VLGPDEHEARPASAGRPVMNVETRIVDGEMNDVPPGVQGEIVHRS 365
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
++ N P+ AF WF SGD+GY D + L + VD VK+ K
Sbjct: 366 PQLLTGYWNKPDETADAFSGDWFHSGDVGYLDDEGYLYV-------VDRVKDVIKTGGVI 418
Query: 153 VASFKVPKKVFIADSLSGKPLTG 175
VAS +V +F ++S + G
Sbjct: 419 VASREVEDAIFTHPAVSEVAVIG 441
>gi|126635337|dbj|BAF48396.1| luciferase [Photinus pyralis]
Length = 550
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGDL Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDLAYWDEDEHFFIVGRLKSLIKYKGYQVAPAELESI 457
>gi|893294|gb|AAA69580.1| 4-coumarate:CoA ligase isoform 2 [Oryza sativa]
Length = 569
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR E+ + D + G N+ G++CIR GP + +
Sbjct: 372 LSMCPAFAKEPT--PAKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIR-GPQIMKG 428
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA GW +G++GY D + + VD VKE K F+VP
Sbjct: 429 YLNDPEATAATIDVEGWLHTGNIGYVDDDDEVFI-------VDRVKELIKFK--GFQVP 478
>gi|54024981|ref|YP_119223.1| acyl-CoA synthetase [Nocardia farcinica IFM 10152]
gi|54016489|dbj|BAD57859.1| putative acyl-CoA synthetase [Nocardia farcinica IFM 10152]
Length = 505
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P+ + SS G+PV E+ + D G D G++ R
Sbjct: 305 YNCFGQSEIGPLAT-VLRPEEHAERPSSCGRPVLFVELRVVDAEGNDVPDGEPGEVLYRS 363
Query: 97 GPM-VQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ + +NPEA AF GWF SGDL D+Q + T VD +K+
Sbjct: 364 PQLCLGYWDNPEATAEAFGDGWFHSGDLVTRDAQGYI-------TVVDRIKDVINTGGIL 416
Query: 153 VASFKVPKKVFIADSLSGKPLTG 175
VAS +V ++ ++++ + G
Sbjct: 417 VASREVEDALYTHEAVAEVAVIG 439
>gi|126635331|dbj|BAF48393.1| luciferase [Photinus pyralis]
Length = 550
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGDL Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDLAYWDEDEHFFIVGRLKSLIKYKGYQVAPAELESI 457
>gi|32455184|gb|AAP83303.1| CBGRluc [Luciferase reporter vector pCBR-Basic]
gi|32455187|gb|AAP83305.1| CBRluc [Luciferase reporter vector pCBR-Control]
Length = 542
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|399018677|ref|ZP_10720848.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Herbaspirillum sp. CF444]
gi|398100585|gb|EJL90821.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Herbaspirillum sp. CF444]
Length = 534
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
E+AI D++ KA G++C+R GP V NNP+AN AF+ WF +GDLG+ D
Sbjct: 360 EIAILDDSCKKLKAFETGEICVR-GPAVFMGYHNNPDANAKAFKGDWFHTGDLGHVDEDG 418
Query: 131 CL 132
L
Sbjct: 419 FL 420
>gi|194767938|ref|XP_001966071.1| GF19420 [Drosophila ananassae]
gi|190622956|gb|EDV38480.1| GF19420 [Drosophila ananassae]
Length = 598
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKA---NVNGKMCIREGPMVQR--INN 105
V +L P AS+ P E I +G D K +G++CIR GP V +NN
Sbjct: 403 VVLLTPDGNTRYASTGVLPPNTEAKIVPLDGNDSKGVGPRASGELCIR-GPQVMSGYLNN 461
Query: 106 PEANKTAFQFG-WFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
EANK F G W SGD+ Y+D + D +KE K V F+VP
Sbjct: 462 EEANKVTFYPGNWLRSGDVAYYDEDGYFYI-------TDRMKELIK--VKGFQVP 507
>gi|357013834|ref|ZP_09078833.1| long-chain-fatty-acid--CoA ligase [Paenibacillus elgii B69]
Length = 551
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 27/118 (22%)
Query: 62 KASSVGKPVR----REMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF 115
+ S G P+ R +AI D N V+ G++ + GPMV + NPEA AF
Sbjct: 363 RVGSAGIPLMDADIRVVAIDDPN-VEVPPGQQGELAFK-GPMVMKGYWKNPEATAAAFVD 420
Query: 116 GWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------AVKEFCKRNVA 154
GWFLSGDLG+ D +++ + + P EV+ A+KE C VA
Sbjct: 421 GWFLSGDLGHVDEDGYVHISGRKKELIKSSGFSVFPNEVESIMHKHTAIKEVCVVGVA 478
>gi|182434194|ref|YP_001821913.1| fatty acid CoA ligase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178462710|dbj|BAG17230.1| putative fatty acid CoA ligase [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 522
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE 96
+G F A+SV P P + G+PV E+ I DE G G++C+R
Sbjct: 316 YGQFEAGAVSVLPASEHDPDR-PEILRTAGRPVPGVEVEIRDETGRVLPVGEIGEICVRS 374
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEF 148
G +++ NPE + GW +GDLG D Q L++ VD +K+
Sbjct: 375 GQLMEGYWKNPELTARVLRDGWMHTGDLGLLDEQGYLSV-------VDRIKDM 420
>gi|409407586|ref|ZP_11256037.1| long-chain-fatty-acid-CoA ligase [Herbaspirillum sp. GW103]
gi|386433337|gb|EIJ46163.1| long-chain-fatty-acid-CoA ligase [Herbaspirillum sp. GW103]
Length = 528
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 21/101 (20%)
Query: 31 YLPPRLEF--GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
+LPP L F + + C +P+ G ++AI +++G +
Sbjct: 326 FLPPYLHFEDDAHPQARVGTCG----MPRTG------------MQIAILNDDGQELAPFE 369
Query: 89 NGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFD 127
G++C+R GP V NNPEAN AF+ WF +GDLG+ D
Sbjct: 370 TGEICVR-GPAVFMGYHNNPEANAKAFKHDWFHTGDLGHVD 409
>gi|34556678|ref|NP_906493.1| long-chain-fatty-acid--CoA ligase [Wolinella succinogenes DSM 1740]
gi|34482392|emb|CAE09393.1| PUTATIVE ACYL-COA LIGASE ) [Wolinella succinogenes]
Length = 513
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 58/181 (32%)
Query: 61 HKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWF 118
K SSVG V E+ I D+ ++ G++ +R G +++ +N+PEA + GW
Sbjct: 327 QKVSSVGPAVPGYEVKIVDDELMELPVGERGEIIVRGGCVMKGYLNHPEATQNTIVNGWL 386
Query: 119 LSGDLGYFDSQRCLNMWK------------ISPTEVD----------------------- 143
L+GD+G D + + + I P E++
Sbjct: 387 LTGDIGKMDEEGYIYILDRKKDLIISKGINIYPREIEEAILSGFPTVKSCAVVGWQDESL 446
Query: 144 --------------------AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
+K + K+++A+FK+PK +++ D L K TGK+ +R++
Sbjct: 447 DEIPVAFLEYEEGAKPHSESEIKGYLKKHLANFKIPKHLYVRDELP-KNATGKVLKRVLK 505
Query: 184 E 184
E
Sbjct: 506 E 506
>gi|345020171|ref|ZP_08783784.1| acyl-CoA synthetase [Ornithinibacillus scapharcae TW25]
Length = 536
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 59/188 (31%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P++ K S GKP + + I DEN + G++ R M +++PE
Sbjct: 344 LQPEDQLRKLGSAGKPTLNLQTKIVDENDKEVPRGEIGEIVHRTPHAMKGYLHDPEKTAE 403
Query: 112 AFQFGWFLSGDLGYFDSQRCLNM------------------------------------- 134
AF+ GWF SGDLG D + + +
Sbjct: 404 AFRGGWFHSGDLGVMDEEGYITIIDRKKDMINTGGVNVSSREVEETIYQLDGVSEVAVIG 463
Query: 135 -----WKISPTEV-----------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
W + T V + V E+C+ ++ FKVPK V A+SL P +GK+
Sbjct: 464 IPDQYWIEAVTAVIVLKESSKLTEETVVEYCQEKLSKFKVPKYVAFAESLPKNP-SGKVL 522
Query: 179 RRIVAELR 186
+R ELR
Sbjct: 523 KR---ELR 527
>gi|163798036|ref|ZP_02191976.1| Putative AMP-dependent synthetase and ligase [alpha proteobacterium
BAL199]
gi|159176693|gb|EDP61266.1| Putative AMP-dependent synthetase and ligase [alpha proteobacterium
BAL199]
Length = 510
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 59/180 (32%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQF---GW 117
K SVG+P+ E+ I D+ G + G++C+R G + + + +TA F W
Sbjct: 318 KIGSVGRPLAHVEIEIRDDTGAALPSGTEGEICLR-GAKITKGYWKDPERTAASFWPSNW 376
Query: 118 FLSGDLGYFDSQRCLNM------------------------------------------W 135
F SGD+GY D+ L + W
Sbjct: 377 FRSGDVGYLDADGFLYLTDRKKDLIISGGENIASSEVERVIYELPQVSEAAVVARPDPQW 436
Query: 136 KISPTEVDAVKE-----------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
P V +K C+ ++A FKVP+++ + D+L P +GK+ +R++ +
Sbjct: 437 GERPVAVVVLKHGTTLDHLTLQAHCRAHLAGFKVPRELHLVDALPRNP-SGKVLKRVLRD 495
>gi|452836248|gb|EME38193.1| hypothetical protein DOTSEDRAFT_57700 [Dothistroma septosporum
NZE10]
Length = 524
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 70/178 (39%), Gaps = 56/178 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFG-WFL 119
K SVG E+ I D+ G + G++ IR E INN +AN AF G +F
Sbjct: 336 KPGSVGLGQGVEVKILDQEGNEVAQGKEGEISIRGENVTKGYINNDKANAEAFTSGGFFR 395
Query: 120 SGDLGYFDS----------QRCLNMW--KISPTEVDAV---------------------- 145
+GD G D + +N KISP E+D V
Sbjct: 396 TGDQGKKDEDGYVIITGRIKELINKGGEKISPIELDNVLAQHPSVGEAVSFAIPDEMLGQ 455
Query: 146 -------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K + + VA FKVP +VF + + K TGKIQRR+VAE
Sbjct: 456 EVAVAVVPKDGQKVTGEELKAYMREKVAKFKVPNRVFFTNVMP-KTATGKIQRRMVAE 512
>gi|365905648|ref|ZP_09443407.1| AMP-dependent synthetase and ligase [Lactobacillus versmoldensis
KCTC 3814]
Length = 505
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP 98
G +T S CT+ P + P K S GKP ++ I + + + N G++ +R
Sbjct: 301 GYGMTETASQCTIN---PFDAP-KVGSAGKPFETDVRIMVDGKIADEPNQIGEIVVRGDH 356
Query: 99 MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
++ +P +F+ GW L+GDLGYFD L
Sbjct: 357 VISSYMDPHPE--SFEDGWLLTGDLGYFDEDGYL 388
>gi|32455196|gb|AAP83311.1| CBG99luc [Luciferase reporter vector pCBG99-Basic]
gi|32455198|gb|AAP83312.1| CBG99luc [Luciferase reporter vector pCBG99-Control]
Length = 542
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|288906111|ref|YP_003431333.1| acyl-CoA synthetase/AMP-acid ligase [Streptococcus gallolyticus
UCN34]
gi|386338552|ref|YP_006034721.1| AMP-binding protein [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|288732837|emb|CBI14413.1| putative Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[Streptococcus gallolyticus UCN34]
gi|334281188|dbj|BAK28762.1| AMP-binding enzyme family protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 505
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFLSG 121
K SVGKP + ++AI +N + ++A G++ +R GP V + + + ++F+ GW L+G
Sbjct: 319 KQGSVGKPFKIDLAIVKDNQLTKQAMQTGEVALR-GPQV-ITDYLQPSPSSFKDGWLLTG 376
Query: 122 DLGYFDSQRCLNM------------WKISPTEVDAV---KEFCKRNVASFKVPKKVF 163
D+G+ D L + KISP V+ V +F K +VA V +V+
Sbjct: 377 DIGHLDEDGYLYLEGRKKDFINRGGEKISPVIVEDVLAQLDFIK-DVAVIPVADEVY 432
>gi|32455190|gb|AAP83307.1| CBG69luc [Luciferase reporter vector pCBG68-Basic]
gi|32455193|gb|AAP83309.1| CBG68luc [Luciferase reporter vector pCBG68-Control]
Length = 542
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|302038425|ref|YP_003798747.1| putative 2-succinylbenzoate--CoA ligase [Candidatus Nitrospira
defluvii]
gi|300606489|emb|CBK42822.1| putative 2-succinylbenzoate--CoA ligase [Candidatus Nitrospira
defluvii]
Length = 570
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 65 SVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPM-VQRINNPEANKTAFQFGWFLSGD 122
S+G +R EMAI DE+G G++CIR + +AN+ AFQ+GWF SGD
Sbjct: 374 SIGTVLRHNEMAILDESGKPVPERKRGEICIRGRTVCAGYFKRDDANEAAFQWGWFRSGD 433
Query: 123 LGYF--DSQRCLNMW--------------KISPTEVDAV 145
G++ D + C + ISP E+D V
Sbjct: 434 EGFYIADDRGCPFFFISGRLKELIVRGGVNISPLEIDDV 472
>gi|422299692|ref|ZP_16387250.1| long-chain-fatty-acid--CoA ligase [Pseudomonas avellanae BPIC 631]
gi|407988325|gb|EKG30897.1| long-chain-fatty-acid--CoA ligase [Pseudomonas avellanae BPIC 631]
Length = 562
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 61/187 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P + +VG P+ M + D+ GV+ G++CI+ GP V + N P+A +
Sbjct: 378 PYGALARLGTVGIPLPGTAMKVIDDEGVELAFGERGELCIK-GPQVMKGYWNRPDATVES 436
Query: 113 FQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV-------------- 145
GWF +GD+ D++ +++ + + P E++ V
Sbjct: 437 LDAEGWFKTGDVAVIDAEGFVSIVDRKKDLIIVSGFNVYPNEIEDVIMAHPKVANCACIG 496
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
K FCK N ++KVPK + + DSL P+ GKI R
Sbjct: 497 VPDERSGEAVKLFVVLRDPSVSVEELKAFCKENFTAYKVPKLIVLRDSLPMTPV-GKILR 555
Query: 180 RIVAELR 186
R ELR
Sbjct: 556 R---ELR 559
>gi|225454787|ref|XP_002274994.1| PREDICTED: 4-coumarate--CoA ligase 2 [Vitis vinifera]
Length = 570
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+S+C F P P K+ S G VR E+ + D E G N G++CIR + M
Sbjct: 368 LSMCLAFAKQP--FPTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMKGY 425
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA + GW +GD+GY D + + VD VKE K F+VP
Sbjct: 426 LNDPEATASTIDVDGWLHTGDIGYVDDDEEVFI-------VDRVKELIK--FKGFQVP 474
>gi|325979073|ref|YP_004288789.1| acetyl-CoA synthetase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325179001|emb|CBZ49045.1| Acetyl-coenzyme A synthetase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 505
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFLSG 121
K SVGKP + ++AI +N + ++A G++ +R GP V + + + ++F+ GW L+G
Sbjct: 319 KQGSVGKPFKIDLAIVKDNQLTKQAMQTGEVALR-GPQV-ITDYLQPSPSSFKDGWLLTG 376
Query: 122 DLGYFDSQRCLNM------------WKISPTEVDAV---KEFCKRNVASFKVPKKVF 163
D+G+ D L + KISP V+ V +F K +VA V +V+
Sbjct: 377 DIGHLDEDGYLYLEGRKKDFINRGGEKISPVIVEDVLAQLDFIK-DVAVIPVADEVY 432
>gi|335038524|ref|ZP_08531760.1| AMP-dependent synthetase and ligase [Caldalkalibacillus thermarum
TA2.A1]
gi|334181585|gb|EGL84114.1| AMP-dependent synthetase and ligase [Caldalkalibacillus thermarum
TA2.A1]
Length = 567
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 58/182 (31%)
Query: 59 GPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF 115
G + S+G P ++ + E+G + + N G++ I+ GP V + PE + +
Sbjct: 372 GKNVVGSIGIPWPDTDVKVVREDGSEAEVNEIGEIAIK-GPQVMKGYWRRPEETEKTLKE 430
Query: 116 GWFLSGDLGYFDSQ-------RCLNM-----WKISPTEV--------------------- 142
GW L+GD+GY D + R +M + I P EV
Sbjct: 431 GWLLTGDMGYMDEEGYFYIVDRKKDMIIAGGYNIYPREVEEVLYEHPAVQECAVIGVPDE 490
Query: 143 --------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
D + E+C+ +A++KVP+ + L K + GK+ RR++
Sbjct: 491 YRGETVKAFIVKKEGKEVTEDELNEYCRSKLAAYKVPRIYEFRNELP-KSMVGKVLRRVL 549
Query: 183 AE 184
AE
Sbjct: 550 AE 551
>gi|299535521|ref|ZP_07048842.1| long-chain-fatty-acid--CoA ligase [Lysinibacillus fusiformis ZC1]
gi|424739205|ref|ZP_18167626.1| long-chain-fatty-acid--CoA ligase [Lysinibacillus fusiformis ZB2]
gi|298728721|gb|EFI69275.1| long-chain-fatty-acid--CoA ligase [Lysinibacillus fusiformis ZC1]
gi|422946843|gb|EKU41248.1| long-chain-fatty-acid--CoA ligase [Lysinibacillus fusiformis ZB2]
Length = 564
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 77/207 (37%), Gaps = 64/207 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVN--GKMCIR 95
+G TS ++ T P G S+G P A+ G ++ + G++ ++
Sbjct: 356 YGLTETSPVTHAT-----PIWGKRVIGSIGLPWPNTEAVILRTGDTEELPIGEVGEIAVK 410
Query: 96 EGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTE 141
GP V + N PE F GWFL+GDLGY D Q + + I P E
Sbjct: 411 -GPQVMKGYWNRPEDTAATFADGWFLTGDLGYMDEQGFFYVVDRKKDLIIAGGFNIYPRE 469
Query: 142 V-----------------------------------------DAVKEFCKRNVASFKVPK 160
V D + ++C++++A+FKVP+
Sbjct: 470 VEEVLYEREEIQECVVAGIPDPYRGETVKAYIVLKEGYSITEDELNKYCRQHLAAFKVPR 529
Query: 161 KVFIADSLSGKPLTGKIQRRIVAELRK 187
+ L K GKI RR + E K
Sbjct: 530 YYEFREELP-KTAVGKILRRTLVEEEK 555
>gi|224367878|ref|YP_002602041.1| acyl-CoA synthetase [Desulfobacterium autotrophicum HRM2]
gi|223690594|gb|ACN13877.1| FadD2 [Desulfobacterium autotrophicum HRM2]
Length = 549
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQ-KANVNGKMCIREGP--MVQRINNPEA 108
+L K+ K S G + E I D +G + + ++ G++C R GP M P+
Sbjct: 356 ILKAKDALSKIGSAGMGGLHMETRIEDIDGREIIRKDLAGEICGR-GPHVMTMYFKEPDK 414
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFI 164
+ A Q GWF SGDLG D +R + T VD K+ K NVAS +V + +++
Sbjct: 415 TEAAMQGGWFHSGDLGVLDQERYI-------TVVDRKKDMIKTGGENVASREVEEAIYL 466
>gi|441183641|ref|ZP_20970382.1| fatty acid CoA ligase [Streptomyces rimosus subsp. rimosus ATCC
10970]
gi|440614113|gb|ELQ77427.1| fatty acid CoA ligase [Streptomyces rimosus subsp. rimosus ATCC
10970]
Length = 524
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRC 131
E+A+ DENG D +G++CIR ++Q PE + GW +GD+G+ D+
Sbjct: 353 EVAVRDENGRDLPRGEHGEICIRSASIMQGYWKQPELTAEVLRDGWLHTGDIGFLDADDY 412
Query: 132 LNMWKISPTEVDAVKEF 148
L + VD +K+
Sbjct: 413 LTI-------VDRIKDM 422
>gi|409390312|ref|ZP_11242062.1| putative fatty-acid--CoA ligase [Gordonia rubripertincta NBRC
101908]
gi|403199720|dbj|GAB85296.1| putative fatty-acid--CoA ligase [Gordonia rubripertincta NBRC
101908]
Length = 502
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P+ + +S G+PV E + D +G D G++ R
Sbjct: 303 YNCFGQSEIGPLAT-VLRPEEHDARPASCGRPVFFVETRVVDADGNDVPVGEPGEILYRS 361
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ Q +NP A + AF+ GWF SGDL D + + T VD +K+
Sbjct: 362 PQLCQGYWDNPTATEEAFRDGWFHSGDLVTRDEEGYV-------TVVDRIKDVINTGGIL 414
Query: 153 VASFKVPKKVFIADSLSGKPLTG 175
VAS +V ++ D+++ + G
Sbjct: 415 VASREVEDAIYTHDAVAEVAVIG 437
>gi|254281943|ref|ZP_04956911.1| AMP-dependent synthetase and ligase [gamma proteobacterium NOR51-B]
gi|219678146|gb|EED34495.1| AMP-dependent synthetase and ligase [gamma proteobacterium NOR51-B]
Length = 517
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 57 KNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAF 113
+ G H S GKP V ++ I DE+G D G++ + GP M+ N PE A
Sbjct: 324 RRGGHLLKSAGKPTVVSDVRIVDESGQDLPLGGRGEIIVT-GPHTMLGYWNKPEETAKAL 382
Query: 114 QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFC---KRNVASFKVPKKVFIADSLSG 170
+ GW +GD GY D + L + VD VK+ NV + +V V D++
Sbjct: 383 RDGWVYTGDAGYLDDEGFLYI-------VDRVKDMVVTGGENVFTTEVENAVISHDAVQD 435
Query: 171 KPLTG 175
+ G
Sbjct: 436 VAVIG 440
>gi|297737319|emb|CBI26520.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+S+C F P P K+ S G VR E+ + D E G N G++CIR + M
Sbjct: 310 LSMCLAFAKQPF--PTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMKGY 367
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA + GW +GD+GY D + + VD VKE K F+VP
Sbjct: 368 LNDPEATASTIDVDGWLHTGDIGYVDDDEEVFI-------VDRVKELIK--FKGFQVP 416
>gi|262193404|ref|YP_003264613.1| AMP-dependent synthetase and ligase [Haliangium ochraceum DSM
14365]
gi|262076751|gb|ACY12720.1| AMP-dependent synthetase and ligase [Haliangium ochraceum DSM
14365]
Length = 553
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Query: 18 PYTNVFLFYKGRVYLPP----RLEF--GCFVTSAISVCTVFVLL--PKNGPHKASSVGKP 69
P LF G LP R E G + + + L P G + SVG P
Sbjct: 301 PLRRARLFTAGSAALPAADFARFEALTGHRILERYGMSETLITLSNPLEGERRPGSVGLP 360
Query: 70 VRR-EMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAFQFGWFLSGDL---- 123
V E+ + DE+G D + + G++ +R G M N PEA AF+ GWF +GD+
Sbjct: 361 VPGFEVRVVDEDGEDAEPDTPGEIWVRGVGLMNGYWNQPEATAQAFRDGWFATGDVAARA 420
Query: 124 --GYFD--SQRCLNM-----WKISPTEVDAV--KEFCKRNVASFKVPKKVF 163
GY +R +++ +KIS E++ V + VA VP +
Sbjct: 421 PDGYLRILGRRSVDIIKSGGFKISAREIEDVLMEHPAVAEVAVIGVPDDTW 471
>gi|440704399|ref|ZP_20885250.1| putative O-succinylbenzoate-CoA ligase [Streptomyces turgidiscabies
Car8]
gi|440273909|gb|ELP62579.1| putative O-succinylbenzoate-CoA ligase [Streptomyces turgidiscabies
Car8]
Length = 489
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREG 97
G ++ CTV P GP +A +VG P +E+ I DE+G Q NG++ +R G
Sbjct: 284 GYGLSETTCACTVN---PIAGPRRAGTVGLPFPGQEIRIVDESGTAQGPGENGEILVR-G 339
Query: 98 PMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVAS 155
+ R + P+ GW +GD+G+ D+ L + V K+ R +
Sbjct: 340 ANIMRGYLGRPDETARTVVDGWLHTGDVGHLDADGYLTL-------VGRSKDIIIRGGEN 392
Query: 156 FKVPKKVFIADSLSGKP 172
PK+ I D L+G P
Sbjct: 393 I-YPKE--IEDVLAGDP 406
>gi|52143488|ref|YP_083341.1| acyl-CoA synthetase [Bacillus cereus E33L]
gi|51976957|gb|AAU18507.1| AMP-binding protein [Bacillus cereus E33L]
Length = 496
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV E + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCEYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLYTGDLARVDE 383
>gi|404260721|ref|ZP_10964000.1| putative fatty-acid--CoA ligase [Gordonia namibiensis NBRC 108229]
gi|403400742|dbj|GAC02410.1| putative fatty-acid--CoA ligase [Gordonia namibiensis NBRC 108229]
Length = 502
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P+ + +S G+PV E + D +G D G++ R
Sbjct: 303 YNCFGQSEIGPLAT-VLRPEEHDARPASCGRPVFFVETRVVDADGNDVPVGEPGEILYRS 361
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ Q +NP A + AF+ GWF SGDL D + + T VD +K+
Sbjct: 362 PQLCQGYWDNPTATEEAFRDGWFHSGDLVTRDEEGYV-------TVVDRIKDVINTGGIL 414
Query: 153 VASFKVPKKVFIADSLSGKPLTG 175
VAS +V ++ D+++ + G
Sbjct: 415 VASREVEDAIYTHDAVAEVAVIG 437
>gi|452751622|ref|ZP_21951367.1| Long-chain-fatty-acid--CoA ligase [alpha proteobacterium JLT2015]
gi|451960841|gb|EMD83252.1| Long-chain-fatty-acid--CoA ligase [alpha proteobacterium JLT2015]
Length = 572
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQ-FGW 117
P+ KP+ E+ I DE+G + A G++CIR V+ NP+A +F GW
Sbjct: 383 PNSTGRASKPMV-EIGIKDEDGSNMPAGERGEVCIRSAANVRGYWRNPQATLESFSPDGW 441
Query: 118 FLSGDLGYFD 127
F +GD+GY D
Sbjct: 442 FHTGDIGYLD 451
>gi|302772244|ref|XP_002969540.1| hypothetical protein SELMODRAFT_410298 [Selaginella moellendorffii]
gi|300163016|gb|EFJ29628.1| hypothetical protein SELMODRAFT_410298 [Selaginella moellendorffii]
Length = 363
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 54/145 (37%)
Query: 90 GKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDL------GYFD-SQRCLNM------ 134
GK+C+R G MV R +NNPEA +F+ GWF SGDL GY + R N+
Sbjct: 205 GKVCMR-GNMVFRGYLNNPEATLESFRGGWFHSGDLAVWHPDGYIEIKDRAKNITISGGE 263
Query: 135 --------------------------WKISP-----------TEVDAVKEFCKRNVASFK 157
W SP ++ + + FC++ + F
Sbjct: 264 NISSLEVGASCTAVLEAAVVARPDEKWGESPCAFVSLKHGMRSKEEEILSFCRQRLPEFM 323
Query: 158 VPKKVFIADSLSGKPLTGKIQRRIV 182
VPK V I +L K TGKIQ++++
Sbjct: 324 VPKSVIILVALD-KTATGKIQKQVL 347
>gi|166091748|gb|ABY81911.1| 4-coumarate:CoA ligase 2 [Ruta graveolens]
Length = 557
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-RINNPEA-NKTAFQFGW 117
KA + G VR EM I D E+G N G++CIR +++ +N+PEA N+T + GW
Sbjct: 371 KAGACGTVVRNAEMKIIDPESGASLPRNKPGEICIRGDQIMKGYLNDPEATNRTIDKDGW 430
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+GD+GY D L + VD +KE K
Sbjct: 431 LHTGDVGYIDDDEELFI-------VDRLKELIK 456
>gi|33333073|gb|AAQ11701.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333083|gb|AAQ11706.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|374998443|ref|YP_004973942.1| putative o-succinylbenzoyl-CoA synthetase [Azospirillum lipoferum
4B]
gi|357425868|emb|CBS88767.1| putative o-succinylbenzoyl-CoA synthetase [Azospirillum lipoferum
4B]
Length = 514
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
R LP F C+ S I VL P+ + +S G+PV E + D + D
Sbjct: 302 RQRLPNAQAFNCYGQSEIGPLAT-VLRPEEHEARPASAGRPVLNVETRVVDPDMNDVPPG 360
Query: 88 VNGKMCIREGP-MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
+G++ R MV + AF GWF SGD+GYFD + L + VD +K
Sbjct: 361 THGEIVHRSPQLMVGYWGKEQETAEAFTGGWFHSGDVGYFDEEGYLFI-------VDRIK 413
Query: 147 EFCKRN---VASFKVPKKVF 163
+ VAS +V + ++
Sbjct: 414 DVINTGGVLVASREVEEAIY 433
>gi|260830433|ref|XP_002610165.1| hypothetical protein BRAFLDRAFT_279625 [Branchiostoma floridae]
gi|229295529|gb|EEN66175.1| hypothetical protein BRAFLDRAFT_279625 [Branchiostoma floridae]
Length = 539
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 29/138 (21%)
Query: 35 RLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAI-----PDENGVDQKAN-- 87
R FG TS ++ K G K SVG + + + PD VD ++
Sbjct: 323 RQGFGMTETSPVTHVV------KMGESKPGSVGSAIVLVVTLVLLFPPDAKVVDVESGKL 376
Query: 88 ----VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTE 141
+G++C+R GP V + +NNPEA + GW +GD+G++DS+ C N +
Sbjct: 377 LGEGEDGELCVR-GPQVMKGYLNNPEATANTIKDGWLHTGDIGHYDSE-C-NFYV----- 428
Query: 142 VDAVKEFCKRNVASFKVP 159
VD +KE K ++VP
Sbjct: 429 VDRLKELIKYK--GYQVP 444
>gi|407698021|ref|YP_006822809.1| AMP-dependent synthetase and ligase [Alcanivorax dieselolei B5]
gi|407255359|gb|AFT72466.1| AMP-dependent synthetase and ligase [Alcanivorax dieselolei B5]
Length = 523
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGV--DQKANVN 89
LP F C+ S I+ VLLP + SS G+P+ + G D K
Sbjct: 313 LPQGRLFNCYGQSEIAPMAT-VLLPHEHADRPSSCGRPLTSVETRVVKPGTLEDCKPGEQ 371
Query: 90 GKMCIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEF 148
G++ R MV + PE AF+ GWF SGDL Y D Q L + VD +K+
Sbjct: 372 GEIVHRSPHLMVAYWDKPEETAEAFKGGWFHSGDLAYQDEQGYLYI-------VDRIKDV 424
Query: 149 CKRN---VASFKVPKKVFIADSLSGKPLTG 175
VAS V + ++ +S++ + G
Sbjct: 425 VNTGGVLVASRDVEEALYGHESVAEVAVIG 454
>gi|384222158|ref|YP_005613324.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium japonicum USDA 6]
gi|354961057|dbj|BAL13736.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium japonicum USDA 6]
Length = 537
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 79/209 (37%), Gaps = 59/209 (28%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKM 92
P ++F F VL P++ KA S GKPV E + + D K G++
Sbjct: 315 PAVKFWNFYGQTEIAPLATVLRPEDQLRKAGSAGKPVLNVETRVVNTAMEDVKVGEVGEI 374
Query: 93 CIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMWK-----ISP 139
R ++ N+P AF GWF SGDL D++ R +M K ++
Sbjct: 375 VHRSPHLLSGYYNDPVKTAAAFTGGWFHSGDLATVDTEGHITVVDRVKDMIKTGGENVAS 434
Query: 140 TEV-----------------------------------------DAVKEFCKRNVASFKV 158
EV DAV + C +A FKV
Sbjct: 435 REVEEMVYRIPAVSEVAVVGLPDPRWIEAVTAIVVVKTGEKLDEDAVIKHCAGQMAHFKV 494
Query: 159 PKKVFIADSLSGKPLTGKIQRRIVAELRK 187
PK+V DSL P +GK+ +R ELR+
Sbjct: 495 PKRVIFVDSLPKNP-SGKLLKR---ELRQ 519
>gi|121607636|ref|YP_995443.1| acyl-CoA synthetase [Verminephrobacter eiseniae EF01-2]
gi|121552276|gb|ABM56425.1| AMP-dependent synthetase and ligase [Verminephrobacter eiseniae
EF01-2]
Length = 529
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEA 108
T VL P + KA S G+PV E I D+ G A G++ R ++ EA
Sbjct: 327 TATVLGPGDQIRKAGSAGRPVLNVETRIVDDAGNPLPAGAMGEIVHRSPQLLSGYLRDEA 386
Query: 109 NKT-AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFI 164
AF GWF SGDLG D + L T VD K+ K NVAS +V + ++
Sbjct: 387 RTAEAFAGGWFHSGDLGVMDEEGFL-------TVVDRKKDMIKTGGENVASREVEEAIYR 439
Query: 165 ADSLSGKPLTG 175
++S + G
Sbjct: 440 HPAVSEVAVVG 450
>gi|33333095|gb|AAQ11712.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333101|gb|AAQ11715.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|387316074|gb|AFJ73429.1| 4-coumarate: coenzyme A ligase, partial [Larix gmelinii var.
principis-rupprechtii]
Length = 457
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 60 PHKASSVGKPVRREMA--IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK-TAFQ 114
P K+ S G VR + + E G N GK+CIR GP + + +N+PEA T +
Sbjct: 335 PVKSGSCGTVVRNALIKILDTETGESLPHNQAGKICIR-GPEIMKGYVNDPEATAATIDE 393
Query: 115 FGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
GW +GD+GY D + + VD VKE K
Sbjct: 394 EGWLHTGDVGYIDDDEEIFI-------VDRVKELIK 422
>gi|164523616|gb|ABY60843.1| 4-coumarate CoA ligase 2 [Ruta graveolens]
Length = 557
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-RINNPEA-NKTAFQFGW 117
KA + G VR EM I D E+G N G++CIR +++ +N+PEA N+T + GW
Sbjct: 371 KAGACGTVVRNAEMKIIDPESGASLPRNKPGEICIRGDQIMKGYLNDPEATNRTIDKDGW 430
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+GD+GY D L + VD +KE K
Sbjct: 431 LHTGDVGYIDDDEELFI-------VDRLKELIK 456
>gi|119897324|ref|YP_932537.1| long-chain-fatty-acid-CoA ligase [Azoarcus sp. BH72]
gi|119669737|emb|CAL93650.1| Long-chain-fatty-acid-CoA ligase [Azoarcus sp. BH72]
Length = 563
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 58/172 (33%)
Query: 65 SVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL-S 120
S+G PV E++I D++GV+Q G++C+R GP V R N PE + AF FL +
Sbjct: 381 SIGLPVPSTEVSIRDDDGVEQPPGQRGELCVR-GPQVTRGYWNRPEDSARAFTPDGFLRT 439
Query: 121 GDLGYFDSQRCLNM------------WKISPTEV------------------------DA 144
GD+ D L + + + P EV +A
Sbjct: 440 GDIAVMDEAGYLRIVDRKKDMILVSGFNVYPNEVEDVVASHPGVLEVAAVGVPDARSGEA 499
Query: 145 VKEF----------------CKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
VK F C+ N+ ++KVP +V +SL K GKI RR
Sbjct: 500 VKVFVVRKDASLTEADLIAYCRENLTAYKVPHRVVFRESLP-KTNVGKILRR 550
>gi|427736553|ref|YP_007056097.1| acyl-CoA synthetase [Rivularia sp. PCC 7116]
gi|427371594|gb|AFY55550.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Rivularia sp.
PCC 7116]
Length = 507
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 58/184 (31%)
Query: 57 KNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAF 113
N +K S+G P+ +M + D NG G++ I+ GP M+ N P+ +
Sbjct: 314 HNFRYKFGSIGMPIENVQMQVVDANGNAVSPGELGEIIIK-GPNVMLGYWNRPQETREVI 372
Query: 114 QFGWFLSGDLGYFDSQ-------RCLNM-----WKISPTEV------------------- 142
+ GW SGD+G D + R +M +K+ P+EV
Sbjct: 373 KDGWLHSGDIGRMDEEGFFYVADRLKDMINVSGFKVYPSEVENVIYQHHAVAEVAIYGVP 432
Query: 143 DAVK----------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
DA+K FC + +A++K+P K+ +SL P TGK+ +R
Sbjct: 433 DAIKGEIVKANIVCKANSQISESEIYHFCTQRMAAYKIPHKIQFVNSLPKNP-TGKVMKR 491
Query: 181 IVAE 184
+ +
Sbjct: 492 FLRQ 495
>gi|392423089|ref|YP_006459693.1| hypothetical protein A458_20275 [Pseudomonas stutzeri CCUG 29243]
gi|390985277|gb|AFM35270.1| hypothetical protein A458_20275 [Pseudomonas stutzeri CCUG 29243]
Length = 911
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 55/177 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP-MVQRINNPEANKTAFQFGWFLS 120
KA +VG+P ++I DENG A G++ +R M + + N+ + GWF +
Sbjct: 349 KADTVGRPWPETLSIVDENGNPLAAGERGEIRVRGATVMPGYLGDDTLNREVLRDGWFHT 408
Query: 121 GDLGYFDSQRCLNMW------------KISPTEVDAV----------------------- 145
GD+G D L + K+S +EVDAV
Sbjct: 409 GDIGSLDEDGFLRLHGRLREVINRGGEKVSLSEVDAVLLRHPAVADAAAFAVPHQRLGQD 468
Query: 146 ------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+ + + + FKVP++V I D+L + LTGK+ R +A+
Sbjct: 469 VAAAVVLHPGMQVAAEKLQRYLRGELVYFKVPRRVQIIDALP-RGLTGKVLRHRLAD 524
>gi|33333071|gb|AAQ11700.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333077|gb|AAQ11703.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333079|gb|AAQ11704.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333081|gb|AAQ11705.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|27376091|ref|NP_767620.1| acid-CoA ligase [Bradyrhizobium japonicum USDA 110]
gi|27349230|dbj|BAC46245.1| bll0980 [Bradyrhizobium japonicum USDA 110]
Length = 534
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V VL ++ KA S GKPV E+ I +G D G++ ++ GP + N PE
Sbjct: 332 VLVLDREDAARKAGSAGKPVLHTEVRIVRPDGSDADVGELGELWVK-GPNITPGYWNRPE 390
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVD------------ 143
ANK++F GW +GD D + ++ WK + P EV+
Sbjct: 391 ANKSSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVENVLHQLGAIAEA 450
Query: 144 ------------------AVK-----------EFCKRNVASFKVPKKVFIADSLSGKPLT 174
AVK C N+A FK P+++ D+L + T
Sbjct: 451 AVIGIPDPQWGEVGLAIVAVKPGQRLTETDVFAHCAANLARFKCPRQIRFVDALP-RNAT 509
Query: 175 GKIQR 179
GKI +
Sbjct: 510 GKIHK 514
>gi|357020436|ref|ZP_09082667.1| AMP-dependent synthetase and ligase [Mycobacterium
thermoresistibile ATCC 19527]
gi|356478184|gb|EHI11321.1| AMP-dependent synthetase and ligase [Mycobacterium
thermoresistibile ATCC 19527]
Length = 492
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P GP K +VG P+ +++ I D G AN G++ I GP V R +N PE
Sbjct: 301 PLRGPRKPGTVGLPLPGQQVRIVDAEGRTLGANEIGEVLI-AGPTVMRGYLNRPEETAKT 359
Query: 113 FQFGWFLSGDLGYFDS-------QRCLNMW-----KISPTEVDAVKE 147
GW +GD+GY D R +M I P E++AV
Sbjct: 360 LVDGWLRTGDIGYLDDDGYLVLVDRAKDMIIRGGENIYPKEIEAVAH 406
>gi|345886660|ref|ZP_08837892.1| hypothetical protein HMPREF0178_00666 [Bilophila sp. 4_1_30]
gi|345038070|gb|EGW42559.1| hypothetical protein HMPREF0178_00666 [Bilophila sp. 4_1_30]
Length = 2095
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 55 LPKNG-PHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKT 111
+PK G + +SVGKPV+ E+ I D++G A+ G + IR + + +NPEA ++
Sbjct: 372 VPKGGDAAEFTSVGKPVQYCEVRIADKDGKPLPADRVGVVEIRGDNVISDYFDNPEATES 431
Query: 112 AFQFGWFLSGDLGYFDSQ 129
+F WF +GD+G+ D++
Sbjct: 432 SFNGDWFSTGDMGFMDAE 449
>gi|302873789|ref|YP_003842422.1| AMP-dependent synthetase and ligase [Clostridium cellulovorans
743B]
gi|307689971|ref|ZP_07632417.1| AMP-dependent synthetase and ligase [Clostridium cellulovorans
743B]
gi|302576646|gb|ADL50658.1| AMP-dependent synthetase and ligase [Clostridium cellulovorans
743B]
Length = 526
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR 95
FG T ++ TV+ K+ P K ++VGKPV E+ I D E GV AN G++ ++
Sbjct: 311 FGQTETLGVTQTTVY---DKDDP-KINTVGKPVEHVEIKICDPETGVTLPANTEGELYVK 366
Query: 96 EG-PMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV 142
M+ NNP A + W +GD+ + D + L++ ISPT++
Sbjct: 367 SAYSMLGYYNNPTATEVTMVDNWIRTGDVAFIDEEGYLSIKGRLKDVIIRGGENISPTDI 426
Query: 143 D 143
+
Sbjct: 427 E 427
>gi|302526138|ref|ZP_07278480.1| O-succinylbenzoate-CoA ligase [Streptomyces sp. AA4]
gi|302435033|gb|EFL06849.1| O-succinylbenzoate-CoA ligase [Streptomyces sp. AA4]
Length = 522
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 59/189 (31%)
Query: 50 TVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP----MVQRIN 104
T+ + P +G + S+G P R + I DE G D V G++ + P M+
Sbjct: 322 TIVTIAPVHGEKRWPSIGLPAPDRRVRIVDERGADVGTGVVGELIVGGVPGRNLMLGYYK 381
Query: 105 NPEANKTAFQFGWFLSGD------LGY---FDSQRC---LNMWKISPTEVD--------- 143
+P A A + GW +GD LGY FD ++ + +S +EV+
Sbjct: 382 DPVATAEALRDGWLHTGDNAYADKLGYVYFFDRRKDVIKVAGENVSASEVERVLLTHPGV 441
Query: 144 --------------------------------AVKEFCKRNVASFKVPKKVFIADSLSGK 171
A+ E+C +++A FKVP +V I D+L K
Sbjct: 442 AEAAVVAASHAIRDEVPVAFVVSAPGSAPTAAALIEYCAQHLAKFKVPAEVTIMDALP-K 500
Query: 172 PLTGKIQRR 180
GKI++R
Sbjct: 501 TSVGKIEKR 509
>gi|37520715|ref|NP_924092.1| long-chain fatty-acid-CoA ligase [Gloeobacter violaceus PCC 7421]
gi|35211710|dbj|BAC89087.1| glr1146 [Gloeobacter violaceus PCC 7421]
Length = 503
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 32 LPPRLE------FGCFVTSA--ISVCTVFVLL-PKNGPHKASSVGKPVRR--EMAIPDEN 80
LPP+LE FG V ++ C+ + P + P K S+G P+ + ++A+ D
Sbjct: 281 LPPQLEAAFAQRFGDLVRQGYGMTECSPYAAFSPPDRPSKPGSIGLPMPQGHKLAVRDPI 340
Query: 81 GVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQ 129
D A + GP V + N PEA AF GW SGDLGY D +
Sbjct: 341 SGDFAAPGTVGELVVSGPHVFKGYWNQPEATSEAFVEGWLRSGDLGYIDEE 391
>gi|226363246|ref|YP_002781028.1| acyl-CoA synthetase [Rhodococcus opacus B4]
gi|226241735|dbj|BAH52083.1| putative fatty-acid--CoA ligase [Rhodococcus opacus B4]
Length = 524
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 70/184 (38%), Gaps = 56/184 (30%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P++ + S GKP + E I D+ A G++ R V + PE
Sbjct: 332 LGPEDQESRGGSAGKPALNVETRIVDDRNEPLPAGEVGEIVHRSPHATVGYLGQPEKTAE 391
Query: 112 AFQFGWFLSGDLGYFDSQRCL-------NMWK----------ISPT--EVDAVKE----- 147
AF GWF SGDLGY D L +M K + T E+D V E
Sbjct: 392 AFAGGWFHSGDLGYLDDDGYLWVVDRKKDMIKSGGENVATREVEETLYELDGVGEAAVFA 451
Query: 148 -----------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
C+ +A +K+PK V +ADSL P +GKI
Sbjct: 452 VPHPRWIEAVAAVVVPVAGVELDEKDVVEHCRGRLAGYKLPKYVVVADSLPKNP-SGKIL 510
Query: 179 RRIV 182
+R++
Sbjct: 511 KRVL 514
>gi|229090943|ref|ZP_04222167.1| Feruloyl-CoA synthetase [Bacillus cereus Rock3-42]
gi|228692344|gb|EEL46079.1| Feruloyl-CoA synthetase [Bacillus cereus Rock3-42]
Length = 496
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV E + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCEYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|452856707|ref|YP_007498390.1| O-succinylbenzoic acid-CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452080967|emb|CCP22734.1| O-succinylbenzoic acid-CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 487
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGSPCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLVLTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFKVDGLP-RNASNKLMRHRLNELRK 483
>gi|147805634|emb|CAN73910.1| hypothetical protein VITISV_031171 [Vitis vinifera]
Length = 531
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+S+C F P P K+ S G VR E+ + D E G N G++CIR + M
Sbjct: 346 LSMCLAFAKQPF--PTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMKGY 403
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAV 145
+N+PEA + GW +GD+GY D ++ P E++A+
Sbjct: 404 LNDPEATASTIDVDGWLHTGDIGYVDDDE-----EVPPAELEAL 442
>gi|384919682|ref|ZP_10019723.1| acyl-CoA synthetase [Citreicella sp. 357]
gi|384466450|gb|EIE50954.1| acyl-CoA synthetase [Citreicella sp. 357]
Length = 533
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
++++ DENG + + G++C+ GP V +NPEAN +F+ G+F +GDLG+ D++
Sbjct: 359 QVSVQDENGAELEPFETGEICV-AGPAVFAGYYDNPEANAKSFRAGFFRTGDLGHMDAE 416
>gi|16080131|ref|NP_390957.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221311019|ref|ZP_03592866.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315345|ref|ZP_03597150.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320262|ref|ZP_03601556.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324545|ref|ZP_03605839.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402777234|ref|YP_006631178.1| o-succinylbenzoic acid--CoA ligase [Bacillus subtilis QB928]
gi|418031728|ref|ZP_12670212.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|452915338|ref|ZP_21963964.1| O-succinylbenzoate-CoA ligase [Bacillus subtilis MB73/2]
gi|20141517|sp|P23971.2|MENE_BACSU RecName: Full=2-succinylbenzoate--CoA ligase; AltName: Full=OSB-CoA
synthetase; AltName: Full=o-succinylbenzoyl-CoA
synthetase
gi|2293149|gb|AAC00227.1| OSB-CoA synthase [Bacillus subtilis]
gi|2635563|emb|CAB15057.1| O-succinylbenzoic acid-CoA ligase [Bacillus subtilis subsp.
subtilis str. 168]
gi|351471580|gb|EHA31698.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|402482413|gb|AFQ58922.1| O-succinylbenzoic acid-CoA ligase [Bacillus subtilis QB928]
gi|407961905|dbj|BAM55145.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis BEST7613]
gi|407965919|dbj|BAM59158.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis BEST7003]
gi|452115686|gb|EME06082.1| O-succinylbenzoate-CoA ligase [Bacillus subtilis MB73/2]
Length = 486
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G + +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+ +FQ GW +GDLGY D++ L + I P EV++V
Sbjct: 350 RESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
++CK +A +K+P K F+ D L +
Sbjct: 410 AEAGVSGAEDKKWGKVPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLLRNQLKDARK 482
>gi|398999644|ref|ZP_10702379.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM18]
gi|398131266|gb|EJM20585.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM18]
Length = 562
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCI 94
GC +T + V P + +VG PV + + ++ GV+Q G++CI
Sbjct: 358 GCRITEGYGLTETSPVACTNPYGDKSRIGTVGLPVPGTTLKVINDEGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + PEA GWF SGD+G D + + + + P
Sbjct: 418 K-GPQIMKGYWQKPEATAEVLDADGWFKSGDIGVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N ++KVP
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARESGVSLEELKAYCKENFTAYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|429852963|gb|ELA28071.1| peroxisomal-coenzyme a synthetase [Colletotrichum gloeosporioides
Nara gc5]
Length = 517
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 56/178 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF-QFGWFL 119
K +VG ++ I D+ G + + G++CIR E +NN AN +++ + G+F
Sbjct: 329 KPGTVGLGQGVDVRILDDEGNELEQGKEGEICIRGENVTKGYLNNEAANASSYTKGGFFR 388
Query: 120 SGDLGYFDS----------QRCLNMW--KISPTEVD-------AVKE------------- 147
+GD G D + +N KISP E+D AV E
Sbjct: 389 TGDQGKKDEDGYVVITGRIKELINKGGEKISPIELDNVLTRHPAVSEAVSFAIPDEMYGQ 448
Query: 148 ---------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+ +A FKVPKK++ +++ K TGKIQRRIVAE
Sbjct: 449 DIGVAIVLKQGQQLKQDELRGWVAEKLAKFKVPKKIYFTETMP-KTATGKIQRRIVAE 505
>gi|321312616|ref|YP_004204903.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis BSn5]
gi|320018890|gb|ADV93876.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis BSn5]
Length = 486
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G + +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+ +FQ GW +GDLGY D++ L + I P EV++V
Sbjct: 350 RESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
++CK +A +K+P K F+ D L +
Sbjct: 410 AEAGVSGAEDKKWGKVPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLLRNQLKDARK 482
>gi|162290068|gb|ABX83887.1| 4-coumarate:CoA ligase [Thujopsis dolabrata]
Length = 186
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 60 PHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR--INNPEANK-TAFQ 114
P K+ S G VR ++ I D E GV N G++CIR GP + + +N+PEA T +
Sbjct: 16 PVKSGSCGTVVRNAQIKIIDTETGVSLSRNKPGEICIR-GPEIMKGYLNDPEATALTIDK 74
Query: 115 FGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
GW +GD+GY D + + VD VKE K
Sbjct: 75 AGWLHTGDVGYIDEDEEIFI-------VDRVKELIK 103
>gi|421041267|ref|ZP_15504275.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus
4S-0116-R]
gi|392222195|gb|EIV47718.1| long-chain fatty-acid--CoA ligase [Mycobacterium abscessus
4S-0116-R]
Length = 505
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFL 119
+ ++G PVR E+ I D+NG D V G++ IR E M N PEA A GWF
Sbjct: 316 RPGTIGIPVRGCELRIVDDNGEDTPDGVPGEVAIRGENLMKGYWNRPEATAEAIPDGWFR 375
Query: 120 SGDLGYFDSQ 129
+GD+ DS
Sbjct: 376 TGDIATHDSD 385
>gi|407716883|ref|YP_006838163.1| AMP-dependent synthetase and ligase [Cycloclasticus sp. P1]
gi|407257219|gb|AFT67660.1| AMP-dependent synthetase and ligase [Cycloclasticus sp. P1]
Length = 513
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 56/182 (30%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
P G K +VG PV EM I +E GV+ G++ +R + M PEA K +F
Sbjct: 322 PVGGIRKIGTVGLPVPNVEMKILNEQGVELPVGEIGEIAVRGDNVMKGYWQLPEATKESF 381
Query: 114 QFGWFLSGDLGYFDSQR------------CLNMWKISPTEVDAV---------------- 145
WFL+GDLG D + +N + P ++ V
Sbjct: 382 YEDWFLTGDLGNVDEEGYFSILDRKKDMVIVNGMNVYPRIIEEVLYRYDGILEAAVIGQT 441
Query: 146 -------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+ +C++++ S++VP+KV D+L K GKI +R
Sbjct: 442 DELHGEIPVAYVVLKESVEASSADIRRWCRQHLGSYEVPRKVVFMDTLP-KNGAGKIVKR 500
Query: 181 IV 182
++
Sbjct: 501 VL 502
>gi|398902199|ref|ZP_10650866.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM50]
gi|398178900|gb|EJM66534.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM50]
Length = 562
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCI 94
GC +T + V P + +VG PV + + ++ GV+Q G++CI
Sbjct: 358 GCRITEGYGLTETSPVACTNPYGDKSRIGTVGLPVPGTTLKVINDEGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + PEA GWF SGD+G D + + + + P
Sbjct: 418 K-GPQIMKGYWQKPEATAEVLDADGWFKSGDIGVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N ++KVP
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARESGVSLEELKAYCKENFTAYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|410582941|ref|ZP_11320047.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Thermaerobacter subterraneus DSM 13965]
gi|410505761|gb|EKP95270.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Thermaerobacter subterraneus DSM 13965]
Length = 567
Score = 47.4 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 58/185 (31%)
Query: 56 PKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P + K +S G P V ++ I D+ G G++ R GP M NNPEA A
Sbjct: 377 PHHQHTKPASWGLPTVMTDVRIMDDQGRLLPRGQVGEIVYR-GPQCMTAYWNNPEATAEA 435
Query: 113 FQFGWFLSGDLGYFDSQ-------RCLNMWK-----ISPTEV------------------ 142
F+ GWF SGD+G+ D + R +M K ++ EV
Sbjct: 436 FRHGWFHSGDVGWMDEEGVVWFTDRKKDMVKTGGENVASIEVERALLAHPAVAECAVVGL 495
Query: 143 ------DAVKEF-----------------CKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+AV F C+ +A FKVPK+V A + TGKIQ+
Sbjct: 496 PHDRWGEAVTAFVLLKPGSQATEEELIAHCRERLAGFKVPKRVVFATEFP-RTGTGKIQK 554
Query: 180 RIVAE 184
++ +
Sbjct: 555 HVLRQ 559
>gi|218782705|ref|YP_002434023.1| AMP-dependent synthetase and ligase [Desulfatibacillum alkenivorans
AK-01]
gi|218764089|gb|ACL06555.1| Long-chain-fatty-acid CoA ligase (AMP-forming) [Desulfatibacillum
alkenivorans AK-01]
Length = 516
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 60/188 (31%)
Query: 56 PKNGPHKASSV-GKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAF 113
P + P +A GKP EM I D +G D G+M +R ++ +PE +K F
Sbjct: 326 PDDPPERAEKTEGKPAPGFEMKIVDLHGADLPVGEVGEMFVRGDSVINGYMDPEDDKNVF 385
Query: 114 QF-GWFLSGDLGYFDSQRCL------------NMWKISPTE------------------- 141
GW +GDLG D Q L + + P E
Sbjct: 386 MGDGWMATGDLGRLDEQGYLIFMGRIKEMYISGGYNVYPQEIEAFLNAYPGVNTSAVMET 445
Query: 142 ----------------------VDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
++A+K CK+++A +K P+K + D + + L GK+ +
Sbjct: 446 PDEVWGEIGVAFVIPEPGVDLDIEALKAHCKKHLADYKRPRKFIVTDDVP-RSLIGKVVK 504
Query: 180 RIVAELRK 187
+ EL+K
Sbjct: 505 K---ELKK 509
>gi|347753490|ref|YP_004861055.1| AMP-dependent synthetase/ligase [Bacillus coagulans 36D1]
gi|347586008|gb|AEP02275.1| AMP-dependent synthetase and ligase [Bacillus coagulans 36D1]
Length = 502
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWF 118
KA SVG+ + + E+ + D +G A G++ ++ GP V + + N E + Q GW
Sbjct: 321 KAGSVGQALPQTEIQVVDADGSPVSAGEVGEIIVK-GPQVMKGYLKNEEETRRVLQNGWL 379
Query: 119 LSGDLGYFDSQRCLNM 134
SGDLGYFD L +
Sbjct: 380 YSGDLGYFDEAGFLYL 395
>gi|20161|emb|CAA36850.1| 4-coumarate-CoA ligase [Oryza sativa Japonica Group]
Length = 563
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 60/196 (30%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+S+C F P K+ + G VR E+ I D + G N+ G++CIR + M
Sbjct: 362 LSMCLAFAKEPFK--VKSGACGTVVRNAELKIIDPDTGKSLGRNLRGEICIRGQQIMKGY 419
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----- 144
+NNPEA K GW +GD+GY D + + ++++P E++A
Sbjct: 420 LNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLNTH 479
Query: 145 ---------------------------------VKEFCKRNVASFKVPKKVFIADSLSGK 171
VK+F + V +K ++VF D +
Sbjct: 480 PSIADAAVVGLKFGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDKIPKA 539
Query: 172 PLTGKIQRRIVAELRK 187
P +GKI R+ ELRK
Sbjct: 540 P-SGKILRK---ELRK 551
>gi|162290056|gb|ABX83881.1| 4-coumarate:CoA ligase [Thuja plicata]
gi|162290058|gb|ABX83882.1| 4-coumarate:CoA ligase [Thuja plicata]
gi|162290060|gb|ABX83883.1| 4-coumarate:CoA ligase [Thuja koraiensis]
gi|162290062|gb|ABX83884.1| 4-coumarate:CoA ligase [Thuja standishii]
gi|162290064|gb|ABX83885.1| 4-coumarate:CoA ligase [Thuja sutchuenensis]
gi|162290066|gb|ABX83886.1| 4-coumarate:CoA ligase [Thuja occidentalis]
Length = 186
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 60 PHKASSVGKPVRREMA--IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK-TAFQ 114
P K+ S G VR I E GV N G++CIR GP + + +N+PEA T +
Sbjct: 16 PVKSGSCGTVVRNAQIKIIDTETGVSLSRNKPGEICIR-GPEIMKGYLNDPEATALTIDK 74
Query: 115 FGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
GW +GD+GY D + + VD VKE K
Sbjct: 75 AGWLHTGDVGYIDEDEEIFI-------VDRVKELIK 103
>gi|84687202|ref|ZP_01015083.1| acyl-CoA synthase [Maritimibacter alkaliphilus HTCC2654]
gi|84664790|gb|EAQ11273.1| acyl-CoA synthase [Maritimibacter alkaliphilus HTCC2654]
Length = 523
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
R LP F C+ S I VL P + +S G+P+ E + DE+ D
Sbjct: 308 RERLPGARPFNCYGQSEIGPLAT-VLYPHEHEERPASAGRPIYNVETRLVDEDMNDVAPG 366
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R ++ + EA + AF GWF SGD+G D + T VD K
Sbjct: 367 EQGEIVHRSPQLLSGYWDKAEATEEAFAGGWFHSGDVGVMDEAGYI-------TVVDRTK 419
Query: 147 EFCKRN---VASFKVPKKVFIADSLS 169
+ K VAS +V + +F ++S
Sbjct: 420 DIIKTGGTMVASREVEEVLFTHPAVS 445
>gi|297190373|ref|ZP_06907771.1| fatty-acid-CoA ligase [Streptomyces pristinaespiralis ATCC 25486]
gi|197720396|gb|EDY64304.1| fatty-acid-CoA ligase [Streptomyces pristinaespiralis ATCC 25486]
Length = 497
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 68/176 (38%), Gaps = 56/176 (31%)
Query: 60 PHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGW 117
P KA S+G P+R EM + E+G + G++ IR E M + PEA A + GW
Sbjct: 316 PRKAGSIGMPIRGVEMKLVAEDGSEVGPGEVGEIVIRGENVMKGYFHRPEATAEAVRDGW 375
Query: 118 FLSGDLG-------YFDSQRCLNM-----WKISPTEVDAV-------------------- 145
F SGDL YF R ++ + + P E++ V
Sbjct: 376 FHSGDLARADEEGFYFIVDRKKDLIIRGGYNVYPREIEEVLYEHPAVAEAAVVGVPHKAH 435
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+++ K VA++K P+ V L P TGKI +R
Sbjct: 436 GEEIAAVIALRGGADATAEQIRDYVKERVAAYKYPRIVTFTAELPKGP-TGKILKR 490
>gi|345870487|ref|ZP_08822439.1| o-succinylbenzoate--CoA ligase [Thiorhodococcus drewsii AZ1]
gi|343921690|gb|EGV32403.1| o-succinylbenzoate--CoA ligase [Thiorhodococcus drewsii AZ1]
Length = 528
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P G + +S+G P+ EM I D G G++C+R GP V + PEA + +
Sbjct: 325 PLGGDRRPASIGVPIPSVEMRILDAAGRPLPDGETGEVCVR-GPSVMKGYFKQPEATRQS 383
Query: 113 FQFGWFLSGDLGYFDSQ 129
F WF +GDLGY D+
Sbjct: 384 FFGDWFRTGDLGYRDAD 400
>gi|357417876|ref|YP_004930896.1| acyl-CoA synthetase [Pseudoxanthomonas spadix BD-a59]
gi|355335454|gb|AER56855.1| acyl-CoA synthetase [Pseudoxanthomonas spadix BD-a59]
Length = 521
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNG 90
LP RL F C+ S I VL P++ + +S G+PV + + D +G G
Sbjct: 312 LPVRL-FNCYGQSEIGPLAT-VLRPEDHAQRPASAGRPVFNVQTRVVDADGQPVAPGEQG 369
Query: 91 KMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKE 147
++ R +++ + PE AF GWF +GDLG D++ L + VD VK+
Sbjct: 370 EIVHRSPQLLRGYWDKPEETAEAFAGGWFHTGDLGVMDAEGYLTI-------VDRVKD 420
>gi|441523245|ref|ZP_21004874.1| putative acyl-CoA synthetase [Gordonia sihwensis NBRC 108236]
gi|441457148|dbj|GAC62835.1| putative acyl-CoA synthetase [Gordonia sihwensis NBRC 108236]
Length = 518
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 63 ASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWFL 119
A SVGKPV EM + D G + V G++ +R GP V N PEA A Q GWF
Sbjct: 332 AGSVGKPVLHVEMKVADGEGDEVPPGVIGELLVR-GPNVFVGYWNKPEATAEALQDGWFH 390
Query: 120 SGDLGYFD 127
+GDL D
Sbjct: 391 TGDLATCD 398
>gi|374849384|dbj|BAL52401.1| long-chain acyl-CoA synthetase [uncultured candidate division OP1
bacterium]
gi|374851975|dbj|BAL54920.1| long-chain acyl-CoA synthetase [uncultured candidate division OP1
bacterium]
gi|374857203|dbj|BAL60056.1| long-chain acyl-CoA synthetase [uncultured candidate division OP1
bacterium]
Length = 510
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 20/130 (15%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++ + PK G S+G P+ E I DE G++C+R
Sbjct: 307 YGLTETSPVTHTNLAAPAPKIG-----SIGWPIEGAECKIVDEQNRRLPVGQVGELCVR- 360
Query: 97 GPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNV 153
GPMV + NNPEA + A G+F +GDL Y D++ + VD VK+ NV
Sbjct: 361 GPMVMKGYHNNPEATRQAIDSEGFFHTGDLAYVDAEGYYYI-------VDRVKDMI--NV 411
Query: 154 ASFKV-PKKV 162
KV PK+V
Sbjct: 412 GGVKVFPKEV 421
>gi|366162456|ref|ZP_09462211.1| AMP-dependent synthetase and ligase [Acetivibrio cellulolyticus
CD2]
Length = 575
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPV-RREMAI--PDENGVDQKANVNGKMCIREGP--M 99
++ C+ V+ ++ + SS+G P+ R E+ I PDENG+ G++ ++ GP M
Sbjct: 366 GLTECSPLVIGNRDKQYIDSSIGLPIPRVEVKIKDPDENGI-------GELIVK-GPNIM 417
Query: 100 VQRINNPEANKTAFQFGWFLSGDLGYFD 127
+ NN EA K + GWF +GDLG D
Sbjct: 418 LGYFNNEEATKRVIRDGWFHTGDLGKKD 445
>gi|289767337|ref|ZP_06526715.1| acyl-CoA synthetase [Streptomyces lividans TK24]
gi|289697536|gb|EFD64965.1| acyl-CoA synthetase [Streptomyces lividans TK24]
Length = 505
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 13/146 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R LP + CF S I VL P + S G+PV + + DE+G D
Sbjct: 294 RARLPHLAFYNCFGQSEIGPLAT-VLGPDEHEGRMDSCGRPVLFVDARVVDEDGKDVPDG 352
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + PE + AF+ GWF SGDL D+ + VD VK
Sbjct: 353 TPGEVVYRSPQLCDGYWDRPEETEAAFRDGWFHSGDLAVRDADGYYTI-------VDRVK 405
Query: 147 EFCKRN---VASFKVPKKVFIADSLS 169
+ VAS +V ++ D+++
Sbjct: 406 DVINSGGVLVASRQVEDALYTHDAVA 431
>gi|288931421|ref|YP_003435481.1| AMP-dependent synthetase and ligase [Ferroglobus placidus DSM
10642]
gi|288893669|gb|ADC65206.1| AMP-dependent synthetase and ligase [Ferroglobus placidus DSM
10642]
Length = 552
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 63/190 (33%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPD-ENGVD---QKANVNGKMCIREGPMVQRI-NNPEAN 109
P +G K S G PV E+ I D E G D + NV G++ +R +++ N+PE
Sbjct: 357 PVHGVIKVGSAGMPVPSVEIKIVDPETGKDLPPGEENV-GEIVLRSKKIIREYWNDPERT 415
Query: 110 KTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAVK----------- 146
K A + GW +GD+GY D + + + + P+EV+ V
Sbjct: 416 KEAIRDGWLYTGDIGYMDEDGYIYIVDRKKDMIIVSGYNVYPSEVEEVLYRHPAVLECAV 475
Query: 147 --------------------------------EFCKRNVASFKVPKKVFIADSLSGKPLT 174
EF ++++A++K+P+ V D L K
Sbjct: 476 IGVPDEYRGEVPKAFIVLKPEYKGKVTEEEIIEFARKHLAAYKIPRIVEFRDELP-KSAV 534
Query: 175 GKIQRRIVAE 184
GKI RR++ E
Sbjct: 535 GKILRRVLRE 544
>gi|124484854|ref|YP_001029470.1| Rossmann fold nucleotide-binding protein-like protein
[Methanocorpusculum labreanum Z]
gi|124362395|gb|ABN06203.1| AMP-dependent synthetase and ligase [Methanocorpusculum labreanum
Z]
Length = 497
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 62/201 (30%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDE--NGVDQK 85
R +P +G T I TV + SVG PV E+ I DE + ++
Sbjct: 280 RYNIPVINAYGLSETVVIGTGTVIRPEDYASADRFQSVGHPVCFSEVKIVDELDSSIEMP 339
Query: 86 ANVNGKMCIREGPMVQR--INNPEANKTAF-QFGWFLSGDLGYFD-------SQRCLNM- 134
++ G++ +R GP V + N P+ +F GWFL+GD+GY D + R +M
Sbjct: 340 IDMPGEIALR-GPAVAKGYWNMPKETAASFLDDGWFLTGDVGYLDKDLRLFLTDRKKDMI 398
Query: 135 ----WKISPTEVD-------------------------------------------AVKE 147
WKI PTEV+ +++
Sbjct: 399 VMSGWKIYPTEVEEALIGHEGVDEIAVFGIPDEHRGEMPVAAVVWRKGWDSSDKEGSLRA 458
Query: 148 FCKRNVASFKVPKKVFIADSL 168
F K +A +KVP+++ D+L
Sbjct: 459 FAKERLAGYKVPRRIITVDAL 479
>gi|84502522|ref|ZP_01000658.1| acyl-CoA synthase [Oceanicola batsensis HTCC2597]
gi|84389334|gb|EAQ02131.1| acyl-CoA synthase [Oceanicola batsensis HTCC2597]
Length = 526
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMV-QRINNPEANK 110
+L P + K S G+P + E + D++ G++ R ++ + NPE
Sbjct: 332 ILKPHDQLRKLGSAGRPGLNVETRVVDDDDNPVPVGEVGEIVHRSPQLITEYYRNPEKTA 391
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLG FD + L + VD K+ K NVAS +V + +F
Sbjct: 392 EAFRNGWFHSGDLGRFDEEGYLYV-------VDRKKDMIKSGGENVASREVEEAIF 440
>gi|115525222|ref|YP_782133.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
BisA53]
gi|115519169|gb|ABJ07153.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris
BisA53]
Length = 511
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFL 119
KA S G P ++ I D +G D NG++ +R M + +N PEA A + GW+
Sbjct: 320 KAGSAGLPALHCDLRIVDLDGRDVAPGDNGEILVRGRNLMREYLNAPEATAAALRDGWYH 379
Query: 120 SGDLGYFDSQRCL 132
+GD+G+ D + L
Sbjct: 380 TGDIGHLDDEGYL 392
>gi|21225521|ref|NP_631300.1| acyl-CoA synthetase [Streptomyces coelicolor A3(2)]
gi|8388748|emb|CAB94058.1| probable long-chain-fatty-acid-CoA ligase [Streptomyces coelicolor
A3(2)]
Length = 505
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 13/146 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R LP + CF S I VL P + S G+PV + + DE+G D
Sbjct: 294 RARLPHLAFYNCFGQSEIGPLAT-VLGPDEHEGRMDSCGRPVLFVDARVVDEDGKDVPDG 352
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + PE + AF+ GWF SGDL D+ + VD VK
Sbjct: 353 TPGEVVYRSPQLCDGYWDRPEETEAAFRDGWFHSGDLAVRDADGYYTI-------VDRVK 405
Query: 147 EFCKRN---VASFKVPKKVFIADSLS 169
+ VAS +V ++ D+++
Sbjct: 406 DVINSGGVLVASRQVEDALYTHDAVA 431
>gi|398998621|ref|ZP_10701392.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM21]
gi|398119915|gb|EJM09588.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Pseudomonas
sp. GM21]
Length = 562
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCI 94
GC +T + V P + +VG PV + + ++ GV+Q G++CI
Sbjct: 358 GCRITEGYGLTETSPVACTNPYGDQSRIGTVGLPVPGTTLKVINDEGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + N PEA GWF SGD+ D + + + + P
Sbjct: 418 K-GPQIMKGYWNKPEATAEVLNAEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N ++KVP
Sbjct: 477 NEIEDVVMAHPNVANCAVIGVPDERSGEAVKLFVVAREAGVSLEELKAYCKENFTAYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|387316082|gb|AFJ73433.1| 4-coumarate: coenzyme A ligase, partial [Cryptomeria japonica]
Length = 494
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 60 PHKASSVGKPVRREMA--IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK-TAFQ 114
P K+ S G VR I E GV N G++CIR GP + + +N+PEA T +
Sbjct: 313 PVKSGSCGTVVRNAQIKIIDTETGVSLPRNKPGEICIR-GPEIMKGYLNDPEATALTIDK 371
Query: 115 FGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
GW +GD+GY D + + VD VKE K
Sbjct: 372 AGWLHTGDVGYIDDDEEIFI-------VDRVKELIK 400
>gi|365866885|ref|ZP_09406483.1| acyl-CoA synthetase [Streptomyces sp. W007]
gi|364003698|gb|EHM24840.1| acyl-CoA synthetase [Streptomyces sp. W007]
Length = 474
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R LP F CF S I VL P + S G+PV E + DE G D
Sbjct: 265 RSRLPHLAFFNCFGQSEIGPLAT-VLGPDEHEGRLDSCGRPVLFVEARVVDEKGEDVPDG 323
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + PE AF+ GWF SGDL D++ L T VD VK
Sbjct: 324 TAGEVVYRSPQLCSGYWDKPEETAAAFRDGWFHSGDLAVRDAEGFL-------TVVDRVK 376
Query: 147 EFCKRN---VASFKVPKKVFIADSLSGKPLTG 175
+ VAS +V ++ +++ + G
Sbjct: 377 DVINSGGVLVASRQVEDALYTHPAVAETAVIG 408
>gi|73539398|ref|YP_299765.1| acyl-CoA synthetase [Ralstonia eutropha JMP134]
gi|72122735|gb|AAZ64921.1| AMP-dependent synthetase and ligase [Ralstonia eutropha JMP134]
Length = 519
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNG 90
LP + C+ S I VL P + +S G+PV E I DE D G
Sbjct: 299 LPALRFYNCYGQSEIGPLAT-VLGPDEHAERPASAGRPVLNVETRIVDEKMNDVAPGTLG 357
Query: 91 KMCIREGPMV-QRINNPEANKTAFQFGWFLSGDLGYFD 127
++ R ++ + + PE AF GWF SGDLGY D
Sbjct: 358 EIVHRSPQLLTEYWDKPEQTAEAFAGGWFHSGDLGYMD 395
>gi|398818617|ref|ZP_10577200.1| O-succinylbenzoate-CoA ligase [Brevibacillus sp. BC25]
gi|398027219|gb|EJL20777.1| O-succinylbenzoate-CoA ligase [Brevibacillus sp. BC25]
Length = 508
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 1 MTMNPLSIHGAAQ----LTITPYTNVFLFYKGRVYLPPRL---------EFGCFVTSAIS 47
+ M +IH A + T + +V FY G P L FG +
Sbjct: 250 IVMGVPAIHEAIRQSPLFATTSFDSVRWFYNGGAPCPMELIQNFQERGLPFGQGYGLTET 309
Query: 48 VCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRIN 104
TVF++ ++ KA S+GKPV E+ + ++G D G++ ++ GP M + N
Sbjct: 310 SPTVFMIAKEDAKRKAGSIGKPVMFCEVRLISDDGKDVGQGEIGELLVK-GPNVMKEYWN 368
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQ 129
PE + GW +GDL FD +
Sbjct: 369 RPEETAKTIRDGWLYTGDLARFDEE 393
>gi|389682052|ref|ZP_10173395.1| long-chain-fatty-acid--CoA ligase FadD [Pseudomonas chlororaphis
O6]
gi|388553926|gb|EIM17176.1| long-chain-fatty-acid--CoA ligase FadD [Pseudomonas chlororaphis
O6]
Length = 562
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 77/207 (37%), Gaps = 64/207 (30%)
Query: 39 GCFVTSAISVCT---VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCI 94
GC +T + V P + +VG PV + + D+ GV+Q G++CI
Sbjct: 358 GCRITEGYGLTETSPVACTNPYGDQSRLGTVGLPVPGTTLKVIDDQGVEQPLGERGELCI 417
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP + + PEA + GWF SGD+ D + + + + P
Sbjct: 418 K-GPQIMKGYWQKPEATEEVLDAEGWFKSGDIAVIDPDGFVRIVDRKKDMIIVSGFNVYP 476
Query: 140 TEVDAV----------------------------------------KEFCKRNVASFKVP 159
E++ V K +CK N +KVP
Sbjct: 477 NEIEDVVMAHPKVANCAVIGVPDERSGEAVKLFVVARESGVSLEELKAYCKENFTGYKVP 536
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELR 186
K + + +SL P+ GKI RR ELR
Sbjct: 537 KHIVLRESLPMTPV-GKILRR---ELR 559
>gi|326530240|dbj|BAJ97546.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 205
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR E+ + D + G+ N+ G++CIR GP + +
Sbjct: 8 LSMCPAFAREPT--PAKSGSCGTVVRNAELKVVDPDTGLSLARNLPGEICIR-GPQIMKG 64
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+++P A GW +GD+GY D + + VD VKE K F+VP
Sbjct: 65 YLDDPVATAATIDVEGWLHTGDIGYVDDDDEVFI-------VDRVKELIKFK--GFQVP 114
>gi|374578600|ref|ZP_09651696.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM471]
gi|374426921|gb|EHR06454.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM471]
Length = 516
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V VL ++ KA S GKPV E+ I +G D G++ ++ GP + N PE
Sbjct: 314 VLVLDREDAARKAGSAGKPVLHTEVRIVRPDGSDADVGELGELWVK-GPNITPGYWNRPE 372
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVD-------AVKE- 147
ANKT+F GW +GD D + ++ WK + P EV+ A+ E
Sbjct: 373 ANKTSFTDGWLHTGDATRVDEEGFYYIVDRWKDMYISGGENVYPAEVENVLHQLNAIAEA 432
Query: 148 ---------------------------------FCKRNVASFKVPKKVFIADSLSGKPLT 174
C N+A FK P++V ++L + T
Sbjct: 433 AVIGIPDPQWGEVGLAIVAAKPGQRLTEADVFAHCAANLARFKCPRQVRFVEALP-RNAT 491
Query: 175 GKIQR 179
GKI +
Sbjct: 492 GKIHK 496
>gi|14290102|gb|AAK59251.1|AF379854_1 luciferase [Cloning vector pVLH/hsp]
gi|3025715|gb|AAC12726.1| luciferase [Cloning vector pVLH-1]
Length = 552
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 343 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 401
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 402 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 459
>gi|294501624|ref|YP_003565324.1| O-succinylbenzoate-CoA ligase [Bacillus megaterium QM B1551]
gi|294351561|gb|ADE71890.1| O-succinylbenzoate-CoA ligase [Bacillus megaterium QM B1551]
Length = 487
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L P++ K S GKP+ M I DE G + + G++ ++ GP V + +N PEA +
Sbjct: 301 LSPEDSLRKLGSAGKPLFPCAMKIVDEKG--NETSEAGEIIVK-GPNVTKGYLNKPEATE 357
Query: 111 TAFQFGWFLSGDLGYFDSQRCL 132
A Q GWF +GD+G D + L
Sbjct: 358 KALQQGWFYTGDIGKVDEEGFL 379
>gi|14009669|gb|AAK51706.1|AF338824_1 luciferase [Cloning vector pVLH/int(+)]
Length = 551
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 342 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 400
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 401 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 458
>gi|31249537|gb|AAP46189.1|AF515711_2 firefly luciferase protein [Cloning vector pNRSAL]
gi|1197680|gb|AAA88784.1| luciferase [Cloning vector pSP-luc+]
gi|1200460|gb|AAA89082.1| luciferase [Cloning vector pGL3-Basic]
gi|1200463|gb|AAA89084.1| luciferase [Cloning vector pGL3-Control]
gi|1200466|gb|AAA89086.1| luciferase [Cloning vector pGL3-Enhancer]
gi|1200469|gb|AAA89088.1| luciferase [Cloning vector pGL3-Promoter]
gi|2598098|gb|AAB83987.1| luciferase [Expression vector pLUC+]
gi|2598101|gb|AAB83989.1| luciferase [Expression vector pTATALUC+]
gi|2598104|gb|AAB83991.1| luciferase [Expression vector ptkLUC+]
gi|2598107|gb|AAB83993.1| luciferase [Expression vector pCMVtkLUC+]
gi|8164198|gb|AAF73967.1| luciferase [Cloning vector pXPG]
gi|9587169|gb|AAF89186.1| luciferase [Cloning Vector pG5luc]
gi|47420066|gb|AAT27382.1| luciferase [Cloning vector pLucGAL4]
gi|47420068|gb|AAT27383.1| luciferase [Cloning vector pLucLRH-1]
gi|47420070|gb|AAT27384.1| luciferase [Cloning vector pLucFXR]
gi|55535619|gb|AAV52869.1| luciferase luc2 [Firefly luciferase reporter vector pGL4.10[luc2]]
gi|55535628|gb|AAV52875.1| luciferase luc2 [Firefly luciferase reporter vector
pGL4.13[luc2/SV40]]
gi|58201866|gb|AAW66982.1| luciferase luc2 [Luciferase reporter vector pGL4.14[luc2/Hygro]]
gi|63055296|gb|AAY29061.1| LUC+ [Cloning vector LUCTRAP-1]
gi|63115343|gb|AAY33852.1| modified luciferase [Cloning vector LUCTRAP-3(GW)]
gi|67677816|gb|AAY79157.1| luciferase [Cloning vector pRGK335]
gi|67679405|gb|AAY79161.1| luciferase [Cloning vector pRGK336]
gi|68272067|gb|AAY89315.1| luciferase [Reporter vector p5xATF6 GL3]
gi|71081805|gb|AAZ23212.1| modified luciferase protein [Cloning vector LUCTRAP]
gi|74196295|dbj|BAE33044.1| unnamed protein product [Mus musculus]
gi|74220993|dbj|BAE33661.1| unnamed protein product [Mus musculus]
gi|76364279|gb|ABA41653.1| luc2 [Firefly luciferase reporter vector pGL4.17[luc2/Neo]]
gi|76364291|gb|ABA41662.1| luc2 [Firefly luciferase reporter vector pGL4.20[luc2/Puro]]
gi|85815796|dbj|BAE78577.1| firefly luciferase [synthetic construct]
gi|110555473|gb|ABG75721.1| luciferase [Cloning vector pRGK 366]
gi|110555477|gb|ABG75724.1| luciferase [Cloning vector pRGK 367]
gi|111120117|emb|CAL26910.1| luciferase [Cloning vector pGWLuc]
gi|115342875|gb|ABI94439.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.23[luc2/minP]]
gi|115342884|gb|ABI94445.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.26[luc2/minP/Hygro]]
gi|122703460|dbj|BAF45068.1| luciferase [Gateway binary vector pGWB35]
gi|122703513|dbj|BAF45111.1| luciferase [Gateway binary vector pGWB235]
gi|122893032|gb|ABM67533.1| Photinus pyralis luciferase [Shuttle vector pANFluc]
gi|122893034|gb|ABM67534.1| Photinus pyralis luciferase [Shuttle vector pMHCluc]
gi|122893036|gb|ABM67535.1| Photinus pyralis luciferase [Shuttle vector pCX43luc]
gi|124482182|gb|ABN11918.1| luciferase [synthetic construct]
gi|124483803|emb|CAM31944.1| luciferase [synthetic construct]
gi|124483805|emb|CAM31946.1| luciferase [synthetic construct]
gi|126145152|dbj|BAF47648.1| luciferase [Gateway binary vector pGWB535]
gi|126149154|dbj|BAF47511.1| luciferase [Gateway binary vector pGWB435]
gi|126153773|emb|CAM31945.1| luciferase [synthetic construct]
gi|138375567|gb|ABO76905.1| luciferase [Cloning vector GWluc-basic]
gi|155733599|gb|ABU39926.1| luciferase [Cloning vector pGreenII 0800]
gi|158392576|dbj|BAF91039.1| luciferase [Gateway binary vector R4pGWB435]
gi|158392645|dbj|BAF91092.1| luciferase [Gateway binary vector R4pGWB535]
gi|169068007|gb|ACA42569.1| firefly luciferase [Transformation vector pCa4B::UAS-luciferase]
gi|169068012|gb|ACA42572.1| firefly luciferase [Transformation vector pCa4B2G-UAS::luciferase]
gi|197215833|gb|ACH53163.1| firefly luciferase [Luciferase reporter vector
pGL4.50[luc2/CMV/Hygro]]
gi|197215837|gb|ACH53166.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.51[luc2/CMV/Neo]]
gi|212717248|gb|ACJ37466.1| modified firefly luciferase [Cloning vector pmirGLO]
gi|260268077|dbj|BAI43865.1| luciferase [Gateway binary vector R4L1pGWB435]
gi|260268112|dbj|BAI43893.1| luciferase [Gateway binary vector R4L1pGWB535]
gi|282952175|emb|CBG37788.1| luciferase [Cloning vector pOt-luc]
gi|284506866|dbj|BAI67459.1| luciferase [Gateway binary vector pGWB635]
gi|284506983|dbj|BAI67549.1| luciferase [Gateway binary vector R4pGWB635]
gi|288191512|gb|ADC44103.1| luciferase [Lentivirus shuttle vector pLV.pA+.GS.Luc]
gi|313507425|gb|ADR65118.1| firefly luciferase protein [Reporter vector pFila]
gi|315113140|dbj|BAJ41851.1| luciferase [piggyBac donor vector pPIGA3Fluc]
gi|315113144|dbj|BAJ41853.1| luciferase [in vitro transcription vector pT7-Fluc(deltai)]
gi|318067477|dbj|BAJ61251.1| luciferase [Gateway binary vector pGWB735]
gi|318067594|dbj|BAJ61341.1| luciferase [Gateway binary vector R4pGWB735]
gi|332144798|dbj|BAK19584.1| luciferase [Gateway vector pUGW35]
gi|372099843|dbj|BAL45814.1| luciferase [Gateway binary vector R4L1pGWB635]
gi|372099878|dbj|BAL45842.1| luciferase [Gateway binary vector R4L1pGWB735]
gi|375332230|gb|AFA52655.1| firefly luciferase [synthetic construct]
gi|375332232|gb|AFA52656.1| firefly luciferase [synthetic construct]
gi|377806863|gb|AFB76528.1| luciferase [synthetic construct]
gi|377806865|gb|AFB76529.1| luciferase [synthetic construct]
gi|377806867|gb|AFB76530.1| luciferase [synthetic construct]
gi|377806869|gb|AFB76531.1| luciferase [synthetic construct]
gi|377806871|gb|AFB76532.1| luciferase [synthetic construct]
gi|377806873|gb|AFB76533.1| luciferase [synthetic construct]
gi|377806875|gb|AFB76534.1| luciferase [synthetic construct]
gi|377806877|gb|AFB76535.1| luciferase [synthetic construct]
gi|377806879|gb|AFB76536.1| luciferase [synthetic construct]
gi|377806881|gb|AFB76537.1| luciferase [synthetic construct]
gi|377806883|gb|AFB76538.1| luciferase [synthetic construct]
gi|377806885|gb|AFB76539.1| luciferase [synthetic construct]
gi|377806887|gb|AFB76540.1| luciferase [synthetic construct]
gi|377806889|gb|AFB76541.1| luciferase [synthetic construct]
gi|377806891|gb|AFB76542.1| luciferase [synthetic construct]
gi|377806893|gb|AFB76543.1| luciferase [synthetic construct]
gi|377806895|gb|AFB76544.1| luciferase [synthetic construct]
gi|377806897|gb|AFB76545.1| luciferase [synthetic construct]
gi|377806899|gb|AFB76546.1| luciferase [synthetic construct]
gi|377806901|gb|AFB76547.1| luciferase [synthetic construct]
gi|377806903|gb|AFB76548.1| luciferase [synthetic construct]
gi|377806905|gb|AFB76549.1| luciferase [synthetic construct]
gi|377806907|gb|AFB76550.1| luciferase [synthetic construct]
gi|377806909|gb|AFB76551.1| luciferase [synthetic construct]
gi|377806911|gb|AFB76552.1| luciferase [synthetic construct]
gi|377806913|gb|AFB76553.1| luciferase [synthetic construct]
gi|377806915|gb|AFB76554.1| luciferase [synthetic construct]
gi|377806917|gb|AFB76555.1| luciferase [synthetic construct]
gi|377806919|gb|AFB76556.1| luciferase [synthetic construct]
gi|377806921|gb|AFB76557.1| luciferase [synthetic construct]
gi|377806923|gb|AFB76558.1| luciferase [synthetic construct]
gi|377806925|gb|AFB76559.1| luciferase [synthetic construct]
gi|377806927|gb|AFB76560.1| luciferase [synthetic construct]
gi|377806929|gb|AFB76561.1| luciferase [synthetic construct]
gi|377806931|gb|AFB76562.1| luciferase [synthetic construct]
gi|377806933|gb|AFB76563.1| luciferase [synthetic construct]
gi|377806935|gb|AFB76564.1| luciferase [synthetic construct]
gi|377806937|gb|AFB76565.1| luciferase [synthetic construct]
gi|377806939|gb|AFB76566.1| luciferase [synthetic construct]
gi|377806941|gb|AFB76567.1| luciferase [synthetic construct]
gi|377806943|gb|AFB76568.1| luciferase [synthetic construct]
gi|377806945|gb|AFB76569.1| luciferase [synthetic construct]
gi|377806947|gb|AFB76570.1| luciferase [synthetic construct]
gi|377806949|gb|AFB76571.1| luciferase [synthetic construct]
gi|377806951|gb|AFB76572.1| luciferase [synthetic construct]
gi|377806953|gb|AFB76573.1| luciferase [synthetic construct]
gi|377806955|gb|AFB76574.1| luciferase [synthetic construct]
gi|377806957|gb|AFB76575.1| luciferase [synthetic construct]
gi|377806959|gb|AFB76576.1| luciferase [synthetic construct]
gi|377806961|gb|AFB76577.1| luciferase [synthetic construct]
gi|377806963|gb|AFB76578.1| luciferase [synthetic construct]
gi|377806965|gb|AFB76579.1| luciferase [synthetic construct]
gi|377806967|gb|AFB76580.1| luciferase [synthetic construct]
gi|402544227|gb|AFQ68242.1| firefly luciferase [Reporter vector pGL3-MSTN-3.8kb]
gi|402544229|gb|AFQ68243.1| firefly luciferase [Reporter vector pGL3-MSTN-2.3kb]
Length = 550
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|343928653|ref|ZP_08768098.1| putative fatty-acid--CoA ligase [Gordonia alkanivorans NBRC 16433]
gi|343761402|dbj|GAA15024.1| putative fatty-acid--CoA ligase [Gordonia alkanivorans NBRC 16433]
Length = 502
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P+ + +S G+PV E + D +G D G++ R
Sbjct: 303 YNCFGQSEIGPLAT-VLRPEEHNARPASCGRPVFFVETRVVDADGNDVPVGEPGEILYRS 361
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ Q +NP A + AF+ GWF SGDL D + + T VD +K+
Sbjct: 362 PQLCQGYWDNPTATEEAFRDGWFHSGDLVTRDEEGYV-------TVVDRIKDVINTGGIL 414
Query: 153 VASFKVPKKVFIADSLSGKPLTG 175
VAS +V ++ D+++ + G
Sbjct: 415 VASREVEDAIYTHDAVAEVAVIG 437
>gi|441515245|ref|ZP_20997051.1| putative fatty-acid--CoA ligase [Gordonia amicalis NBRC 100051]
gi|441450008|dbj|GAC55012.1| putative fatty-acid--CoA ligase [Gordonia amicalis NBRC 100051]
Length = 502
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P+ + +S G+PV E + D +G D G++ R
Sbjct: 303 YNCFGQSEIGPLAT-VLRPEEHDARPASCGRPVFFVETRVVDADGNDVPVGEPGEILYRS 361
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ Q +NP A AF+ GWF SGDL D + + T VD +K+
Sbjct: 362 PQLCQGYWDNPTATDEAFRGGWFHSGDLVTRDEEGYV-------TVVDRIKDVINTGGIL 414
Query: 153 VASFKVPKKVFIADSLSGKPLTG 175
VAS +V ++ D+++ + G
Sbjct: 415 VASREVEDAIYTHDAVAEVAVIG 437
>gi|295706972|ref|YP_003600047.1| o-succinylbenzoate--CoA ligase [Bacillus megaterium DSM 319]
gi|294804631|gb|ADF41697.1| O-succinylbenzoate-CoA ligase [Bacillus megaterium DSM 319]
Length = 487
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L P++ K S GKP+ M I DE G + + G++ ++ GP V + +N PEA +
Sbjct: 301 LSPEDSLRKLGSAGKPLFPCAMKIVDEKG--NETSEAGEIIVK-GPNVTKGYLNKPEATE 357
Query: 111 TAFQFGWFLSGDLGYFDSQRCL 132
A Q GWF +GD+G D + L
Sbjct: 358 KALQQGWFYTGDIGKVDEEGFL 379
>gi|190888541|gb|ACE95896.1| GloSensor-10F protein [Cloning vector pGloSensor-10F]
Length = 547
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 109 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 167
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 168 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 225
>gi|453380393|dbj|GAC84904.1| putative fatty-acid--CoA ligase [Gordonia paraffinivorans NBRC
108238]
Length = 502
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P+ + +S G+PV E + D + D A G++ R
Sbjct: 303 YNCFGQSEIGPLAA-VLRPEEHDARPASCGRPVFFVEARVVDADDNDVPAGEPGEILYRS 361
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ + NPEA + AF+ GWF SGDL D + + T VD +K+
Sbjct: 362 PQLCEGYWENPEATEEAFRGGWFHSGDLVTRDEEGYI-------TVVDRIKDVINTGGIL 414
Query: 153 VASFKVPKKVFIADSLSGKPLTG 175
VAS +V ++ D ++ + G
Sbjct: 415 VASREVEDAIYTHDDVAEVAVIG 437
>gi|190888544|gb|ACE95898.1| GloSensor-10F[TEV] [Cloning vector pGloSensor-10F[TEV]]
Length = 554
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 109 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 167
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 168 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 225
>gi|13160953|gb|AAK13426.1|AF320510_4 luciferase [Promoter probe vector pJB785TTKm1]
Length = 559
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 350 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 408
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 409 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 466
>gi|1197683|gb|AAA88786.1| luciferase [Cloning vector pSP-luc+NF]
gi|57634584|gb|AAW52575.1| luciferase [Cloning vector p713-947]
Length = 551
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 342 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 400
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 401 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 458
>gi|403220382|dbj|BAM38523.1| luciferase [Hepatitis C virus replicon pSGR-S310/Luc]
Length = 569
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 360 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 418
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 419 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 476
>gi|42718124|gb|AAS38485.1| luciferase [RNA interference vector psiCHECK(TM)-2]
Length = 550
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|83590109|ref|YP_430118.1| AMP-dependent synthetase and ligase [Moorella thermoacetica ATCC
39073]
gi|83573023|gb|ABC19575.1| AMP-dependent synthetase and ligase [Moorella thermoacetica ATCC
39073]
Length = 546
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 24/164 (14%)
Query: 34 PRLEFGCF--VTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNG 90
P+LEF +T S T+F P +S G P+ + + D G D G
Sbjct: 337 PQLEFHTVYGLTETSSPATLFPGDVATSPRIGTS-GIPIPVVDCKVIDAEGRDITGKGVG 395
Query: 91 KMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEF 148
++CIR GP+V Q NN EA AFQ GWF +GD+ D + + +D +K+
Sbjct: 396 ELCIR-GPVVTQQYWNNDEATTRAFQGGWFRTGDVARIDGDGYVYI-------MDRLKDM 447
Query: 149 CKRN---VASFKVPKKVF-------IADSLSGKPLTGKIQRRIV 182
R + S +V ++ +A S P+ G++ R +V
Sbjct: 448 INRGGEKIYSLEVENVIYSHPGVKEVAVIGSVDPIYGEVARAVV 491
>gi|395644847|ref|ZP_10432707.1| AMP-dependent synthetase and ligase [Methanofollis liminatans DSM
4140]
gi|395441587|gb|EJG06344.1| AMP-dependent synthetase and ligase [Methanofollis liminatans DSM
4140]
Length = 514
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 67/206 (32%)
Query: 42 VTSAISVCTVFVLLPKN-GPHKA-SSVGKPVRR-EMAIPDENGVDQKANVN--GKMCIRE 96
++ I V + V+LP++ H+ SVG PV E+ I E+ +++ G++ +R
Sbjct: 305 LSETIVVGSANVVLPRHYALHQGYRSVGAPVGYGEVKIVAEDDPERELQPGEIGEVALR- 363
Query: 97 GPMVQR--INNPEANKTAFQ-FGWFLSGDLGYFDSQRCL------------NMWKISPTE 141
GP V + P+A F+ GWFL+GDLGY D + L + WKI PTE
Sbjct: 364 GPSVAKGYWGMPDATAAVFRPDGWFLTGDLGYLDGESVLFITDRKKDMIIMSGWKIYPTE 423
Query: 142 VDAV-----------------------------------------KEFCKRNVASFKVPK 160
V+ V +C+ +A +KVP+
Sbjct: 424 VENVIIEHPKIADVAIFARPDEHRGEIPVAAVVMNEGETITEEELIAYCRERLAGYKVPR 483
Query: 161 KVFIADSLSGKPLTG--KIQRRIVAE 184
+V + + L P G K+ RR + E
Sbjct: 484 EVVVVEHL---PRVGGWKLLRRTLRE 506
>gi|333920835|ref|YP_004494416.1| putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase
[Amycolicicoccus subflavus DQS3-9A1]
gi|333483056|gb|AEF41616.1| Putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase
[Amycolicicoccus subflavus DQS3-9A1]
Length = 497
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 56/182 (30%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
P G K SVG P+ EM + ++G G++C+R E M + P A AF
Sbjct: 310 PPEGRRKIGSVGLPLEGVEMRVITDDGETLPPGELGEICVRGENVMKGYLGRPSATAEAF 369
Query: 114 QFGWFLSGDL------GYF---DSQRCLNM---WKISPTEVDAV---------------- 145
GWF +GD+ GYF D ++ L + + + P EV+ V
Sbjct: 370 IDGWFRTGDIGKTDDDGYFYIVDRKKSLIIRGGYNVYPREVEEVLYEHPDIVEAAVIGIP 429
Query: 146 -------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+ K +A++K P++V+ D L P TGKI RR
Sbjct: 430 HPTLGEEVGAAITVRQGTTLDPADISAYVKARLAAYKYPRQVWAVDELPKGP-TGKILRR 488
Query: 181 IV 182
V
Sbjct: 489 EV 490
>gi|198409931|gb|ACH87781.1| luciferase [Photinus pyralis]
Length = 233
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 31 YLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANV 88
+ PP + G +T S +L+ G K +VGK P + + G N
Sbjct: 123 FHPPGIRQGYGLTETTSA----ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ 178
Query: 89 NGKMCIREGPMVQR--INNPEA-NKTAFQFGWFLSGDLGYFDSQR 130
G++C+R GPM+ +NNPEA N + GW SGB+ Y+D
Sbjct: 179 RGELCVR-GPMIMSGYVNNPEATNALIDKDGWLHSGBIAYWDEDE 222
>gi|7415877|dbj|BAA93575.1| luciferase [synthetic construct]
Length = 553
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 344 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 402
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 403 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 460
>gi|254995969|dbj|BAH86766.1| firefly luciferase [Mammalian expression vector
pCInx-hRPSIVCAA21FLuc]
Length = 558
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 349 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 407
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 408 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 465
>gi|254995964|dbj|BAH86762.1| firefly luciferase [Mammalian expression vector
pC[Delta]E-chimUAAgaCAA21FLucH]
Length = 564
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 349 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 407
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 408 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 465
>gi|239828126|ref|YP_002950750.1| O-succinylbenzoic acid--CoA ligase [Geobacillus sp. WCH70]
gi|259495572|sp|C5D6U5.1|MENE_GEOSW RecName: Full=2-succinylbenzoate--CoA ligase; AltName: Full=OSB-CoA
synthetase; AltName: Full=o-succinylbenzoyl-CoA
synthetase
gi|239808419|gb|ACS25484.1| O-succinylbenzoate-CoA ligase [Geobacillus sp. WCH70]
Length = 492
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 56/177 (31%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
+ + L P+ K S GKP+ +++G + G++ ++ GP V + ++
Sbjct: 292 TASQIATLAPEYSLTKLGSAGKPLFPSQLRIEKDGQVARPYEPGEIVVK-GPNVTKGYLH 350
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
P+A A + GWF +GD+GY D L + + P E++AV
Sbjct: 351 RPDATAKAIRGGWFYTGDIGYIDEDGFLYVLDRRSDLIISGGENVYPAEIEAVLLSHEAV 410
Query: 146 ----------------------------------KEFCKRNVASFKVPKKVFIADSL 168
K+FC+ ++A +K+PK+++ D L
Sbjct: 411 EEAGVTGIDDETWGQVPCAFVKRKRGYSVTVEQLKQFCQAHLAKYKIPKQIYFVDEL 467
>gi|112950133|gb|ABI26719.1| 4-coumarate:CoA ligase [Hibiscus cannabinus]
Length = 295
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-RINNPEANK-TAFQFGW 117
K+ + G VR EM I D E G N +G++CIR +++ +N+PEA K T + GW
Sbjct: 168 KSGACGTVVRNAEMKIVDPETGTSLPRNQSGEICIRGSQIMKGYLNDPEATKRTIDKEGW 227
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+GD+GY D L + VD +KE K
Sbjct: 228 LHTGDIGYIDEDNELFI-------VDRLKELIK 253
>gi|429506361|ref|YP_007187545.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|429487951|gb|AFZ91875.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
Length = 487
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLVLTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFEVDGLP-RNASNKLMRHRLNELRK 483
>gi|400977532|pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
gi|400977533|pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 346 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 404
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 405 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 462
>gi|384103848|ref|ZP_10004812.1| acyl-CoA synthetase [Rhodococcus imtechensis RKJ300]
gi|383838679|gb|EID78049.1| acyl-CoA synthetase [Rhodococcus imtechensis RKJ300]
Length = 447
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L+P++ + S GKP + E I D+ + A G++ R V + PE
Sbjct: 239 LVPEDQETRGGSAGKPALNVETRIVDDRDLPLPAGEVGEIVHRSPHATVGYLRQPEKTAE 298
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIADSL 168
AF GWF SGDLGY D L + VD K+ K NVA+ +V + ++ D +
Sbjct: 299 AFVGGWFHSGDLGYLDEDGYLWV-------VDRKKDMIKTGGENVATREVEETLYELDGV 351
>gi|328863879|gb|EGG12978.1| hypothetical protein MELLADRAFT_32216 [Melampsora larici-populina
98AG31]
Length = 528
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 63/182 (34%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFG--W 117
K +VGKP ++ I + D+ G++CIR GP V +NN +AN +F +
Sbjct: 341 KPGTVGKPQGVDLRILSFDSEDEVEE--GEVCIR-GPNVTAGYLNNSKANSESFTVKERF 397
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------------- 145
F +GD G D+ L + K+SP E+D
Sbjct: 398 FRTGDRGRLDADGYLTLTGRLKELINRGGEKLSPLELDGALLAVPGVAEAVAFGVPDKKY 457
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVA 183
K+ KR + FKVP+K+FI + + K TGK+QRR VA
Sbjct: 458 GEVPWAAVVLKTGITLTQNEIQKDLSKR-LGQFKVPEKIFIVEQIP-KTATGKVQRRKVA 515
Query: 184 EL 185
E+
Sbjct: 516 EV 517
>gi|331695438|ref|YP_004331677.1| long-chain-fatty-acid--CoA ligase [Pseudonocardia dioxanivorans
CB1190]
gi|326950127|gb|AEA23824.1| Long-chain-fatty-acid--CoA ligase [Pseudonocardia dioxanivorans
CB1190]
Length = 497
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 59/204 (28%)
Query: 37 EFGCFVTSAISVCTVFVLLPKNGPH---KASSVGKPVRR-EMAIPDENGVDQKANVNGKM 92
+FGC V + + N PH K S+G + EM + D+ G D + G++
Sbjct: 291 KFGCIVLEGYGLSETSPVASFNQPHRERKPGSIGFEIPGCEMRVVDDEGRDVGLDTPGEI 350
Query: 93 CIR-EGPMVQRINNPEANKTAFQFGWFLSGDL------GYF---DSQRCLNM---WKISP 139
IR E M P+A A GWF +GD+ GY+ D ++ L + + + P
Sbjct: 351 AIRGENVMKGYWRRPDATAEAIPDGWFRTGDIATKDADGYYFIVDRKKDLIIRGGYNVYP 410
Query: 140 TEV-----------------------------------------DAVKEFCKRNVASFKV 158
EV + +++F K VA++K
Sbjct: 411 REVEEALYEHPAVAEAAVIGIPHPEWGEEVGAAVALKPGEKADPEELRDFVKERVAAYKY 470
Query: 159 PKKVFIADSLSGKPLTGKIQRRIV 182
P++V++ L P TGKI RR V
Sbjct: 471 PRQVWLVPELPKGP-TGKILRREV 493
>gi|288965482|pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
gi|288965483|pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
gi|288965484|pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
gi|194716699|gb|ACF93193.1| luciferase [Luciferase ICE T7 Control vector]
Length = 551
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|118474838|ref|YP_892795.1| long-chain-fatty-acid--CoA ligase [Campylobacter fetus subsp. fetus
82-40]
gi|118414064|gb|ABK82484.1| acyl-CoA synthase [Campylobacter fetus subsp. fetus 82-40]
Length = 514
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 56/195 (28%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ-R 102
+S C+ V + + K SSVG P+ + I D+ +++ G++ ++ ++Q
Sbjct: 314 GLSECSPLVSVNRPEHKKISSVGLPLAEYNVKIVDDEMMEKNIGEVGEIIVKGDNVMQGY 373
Query: 103 INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV----- 145
+NNP A GW +GD+G D L + I P E++ +
Sbjct: 374 LNNPGATDDTIINGWLRTGDIGKIDEDGFLYIVDRLKDLIISKGQNIYPREIEEIIYRLE 433
Query: 146 ------------------------------------KEFCKRNVASFKVPKKVFIADSLS 169
KEF K+++A+FK+PK ++ AD L
Sbjct: 434 EIEACAVIGIKDESEDEDVVAFVQLKDGINIEAIKIKEFLKKHLANFKIPKHIYFADELP 493
Query: 170 GKPLTGKIQRRIVAE 184
K GK+ +R++ +
Sbjct: 494 -KNAAGKVLKRVLKD 507
>gi|154687205|ref|YP_001422366.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
FZB42]
gi|166233669|sp|A7Z809.1|MENE_BACA2 RecName: Full=2-succinylbenzoate--CoA ligase; AltName: Full=OSB-CoA
synthetase; AltName: Full=o-succinylbenzoyl-CoA
synthetase
gi|154353056|gb|ABS75135.1| MenE [Bacillus amyloliquefaciens FZB42]
Length = 487
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGSEDPKWGKVPHAFLVLTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFEVDGLP-RNASNKLMRHRLNELRK 483
>gi|126635329|dbj|BAF48392.1| luciferase [Photinus pyralis]
Length = 550
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|1669527|dbj|BAA05006.1| luciferase [Photuris pennsylvanica]
Length = 552
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDEN-GVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K +VGK V + + D N G N G++C + GPM+ +
Sbjct: 340 GLTETTCAIVITAEGEFKLGAVGKVVPFYSLKVLDLNTGKKLGPNERGEICFK-GPMIMK 398
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
INNPEA + + GW SGD+GYFD + + +++ P E++A+
Sbjct: 399 GYINNPEATRELIDEEGWIHSGDIGYFDEDGHVYIVDRLKSLIKYKGYQVPPAELEAL 456
>gi|14009672|gb|AAK51708.1|AF338825_1 luciferase [Cloning vector pHLH/int(+)]
Length = 550
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|37526050|ref|NP_929394.1| long-chain-fatty-acid--CoA ligase [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785480|emb|CAE14427.1| long-chain-fatty-acid--CoA ligase (long-chain acyl-CoA synthetase)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 560
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 60/186 (32%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P N H S+G PV E+ + D++G + + G++ IR GP M N P+A +
Sbjct: 370 PYNSKHYTGSIGFPVSSTEIKLVDDDGNEVEMGQQGELWIR-GPQVMAGYWNRPDATEEV 428
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
+ GW +GD+ + Q +++ + + P EV
Sbjct: 429 LKDGWVATGDIANVNEQGSIHIVDRKKDMILVSGFNVYPNEVEDVVSAHPKVLESAAIGV 488
Query: 143 ----------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
D +K C+R + +KVPK + D L K GKI RR
Sbjct: 489 SSESSGETVKVFVVRIDPGLTEDELKTHCRRYLTGYKVPKIIEFRDELP-KSNVGKILRR 547
Query: 181 IVAELR 186
ELR
Sbjct: 548 ---ELR 550
>gi|410087837|ref|ZP_11284538.1| Long-chain-fatty-acid--CoA ligase [Morganella morganii SC01]
gi|421493808|ref|ZP_15941162.1| FADD [Morganella morganii subsp. morganii KT]
gi|455739241|ref|YP_007505507.1| Long-chain-fatty-acid--CoA ligase [Morganella morganii subsp.
morganii KT]
gi|400191852|gb|EJO24994.1| FADD [Morganella morganii subsp. morganii KT]
gi|409765831|gb|EKN49934.1| Long-chain-fatty-acid--CoA ligase [Morganella morganii SC01]
gi|455420804|gb|AGG31134.1| Long-chain-fatty-acid--CoA ligase [Morganella morganii subsp.
morganii KT]
Length = 563
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 60/186 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P N + S+G PV E+ + D++G D + G+M +R GP V + N P+A
Sbjct: 370 PHNLKSYSGSIGFPVPSTEIRLMDDDGTDVQEGQPGEMWVR-GPQVMKGYWNRPDATAEV 428
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
+ GW +GD+ FD L++ + + P EV
Sbjct: 429 LKDGWVATGDIAQFDENGFLHIVDRKKDMILVSGFNVYPNEVEDAVMLHPAVLECAAIGV 488
Query: 143 ----------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
D ++ C+R + +KVPK + D L K GKI RR
Sbjct: 489 ESESSGETVKIFVVRKDKSLTEDDLRLHCRRYLTGYKVPKIIEFRDELP-KSNVGKILRR 547
Query: 181 IVAELR 186
ELR
Sbjct: 548 ---ELR 550
>gi|393714873|dbj|BAM28686.1| luciferase [Hepatitis C virus replicon pSGR-JFH2.1/Luc]
Length = 550
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|104782966|ref|YP_609464.1| long-chain-fatty-acid--CoA ligase [Pseudomonas entomophila L48]
gi|95111953|emb|CAK16678.1| long-chain-fatty-acid--CoA ligase [Pseudomonas entomophila L48]
Length = 562
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 79/205 (38%), Gaps = 66/205 (32%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++ + L + G +VG PV + D+ G++Q G++CI+
Sbjct: 365 YGLTETSPVASTNPYGQLARLG-----TVGMPVPNTAFKVIDDAGLEQALGERGELCIK- 418
Query: 97 GPMVQR--INNPEANKTAFQF-GWFLSGDLGYFD------------SQRCLNMWKISPTE 141
GP V + PEA A GWF +GD+ D ++ + + P E
Sbjct: 419 GPQVMKGYWQQPEATAQALDAEGWFKTGDIAIIDPDGFTRIVDRKKDMIIVSGFNVYPNE 478
Query: 142 ----------------------------------------VDAVKEFCKRNVASFKVPKK 161
VD +K +CK N +KVPK+
Sbjct: 479 IEDVVMNHPQVANCAAIGVPDERSGEAVKLFVVAREGGLDVDELKAYCKANFTGYKVPKQ 538
Query: 162 VFIADSLSGKPLTGKIQRRIVAELR 186
+ + +SL P+ GKI RR ELR
Sbjct: 539 IVVRESLPMTPV-GKILRR---ELR 559
>gi|384179904|ref|YP_005565666.1| acyl-CoA synthetase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324325988|gb|ADY21248.1| acyl-CoA synthetase [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 496
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV E + DEN + G++ IR GP M + N
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCEYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRL 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A K A Q GW +GDL D
Sbjct: 362 DATKEAIQDGWLYTGDLARVDE 383
>gi|300509022|gb|ADK24217.1| 4-coumarate:CoA ligase [Hibiscus cannabinus]
Length = 540
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-RINNPEANK-TAFQFGW 117
K+ + G VR EM I D E G N +G++CIR +++ +N+PEA K T + GW
Sbjct: 354 KSGACGTVVRNAEMKIVDPETGTSLPRNQSGEICIRGSQIMKGYLNDPEATKRTIDKEGW 413
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+GD+GY D L + VD +KE K
Sbjct: 414 LHTGDIGYIDEDNELFI-------VDRLKELIK 439
>gi|325672882|ref|ZP_08152576.1| feruloyl-CoA synthetase [Rhodococcus equi ATCC 33707]
gi|325556135|gb|EGD25803.1| feruloyl-CoA synthetase [Rhodococcus equi ATCC 33707]
Length = 512
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P + SS G+ V E + D NG D G++ R
Sbjct: 305 YNCFGQSEIGPLAT-VLGPDEHEARPSSCGRAVYFVETRVVDANGDDVPDGEPGEILYRS 363
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ Q +NPEA AF+ GWF SGDL D+Q + T VD +K+
Sbjct: 364 PQLCQGYWDNPEATAEAFRDGWFHSGDLVTRDAQGYI-------TVVDRIKDVINTGGIL 416
Query: 153 VASFKVPKKVF 163
VAS +V ++
Sbjct: 417 VASREVEDALY 427
>gi|207091331|gb|ACI23257.1| Puromycin2AGFP2ALuciferase2ANTR [Retroviral expression vector L149]
Length = 1284
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKA 86
R +LP G ++ T +L+ G K +VGK P + + G
Sbjct: 819 RFHLP-----GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 873
Query: 87 NVNGKMCIREGPMVQR--INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM--------- 134
N G++C+R GPM+ +NNPEA N + GW SGD+ Y+D +
Sbjct: 874 NQRGELCVR-GPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK 932
Query: 135 ---WKISPTEVDAV 145
++++P E++++
Sbjct: 933 YKGYQVAPAELESI 946
>gi|126635335|dbj|BAF48395.1| luciferase [Photinus pyralis]
Length = 550
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVGRLKSLIKYKGYQVAPAELESI 457
>gi|17530179|gb|AAL40735.1| protein serine kinase/luciferase fusion protein [synthetic
construct]
Length = 975
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 766 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 824
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 825 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 882
>gi|3123921|gb|AAC40214.1| firefly luciferase [Reporter vector p2luc]
Length = 549
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 340 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 398
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 399 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 456
>gi|408534372|emb|CCK32546.1| dicarboxylate-CoA ligase PimA [Streptomyces davawensis JCM 4913]
Length = 499
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 13/159 (8%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R LP + CF S I VL P + S G+PV + + DE+G D
Sbjct: 288 RERLPELGFYNCFGQSEIGPLAT-VLAPDEHKGRMDSCGRPVLFVDARVVDEDGKDVPDG 346
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ R + + + PE AF+ GWF SGDL D+ + VD VK
Sbjct: 347 TPGEIVYRSPQLCEGYWDKPEETAEAFRDGWFRSGDLAVRDAHGYFTI-------VDRVK 399
Query: 147 EFCKRN---VASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ VAS +V ++ D ++ + G R +
Sbjct: 400 DVINSGGVLVASRQVEDALYTHDGVAEVAVVGLPDERWI 438
>gi|421730527|ref|ZP_16169653.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|407074681|gb|EKE47668.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum M27]
Length = 487
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLVLTSSVNSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFKVDGLP-RNASNKLMRHRLNELRK 483
>gi|387316209|gb|AFJ73459.1| 4-coumarate: coenzyme A ligase, partial [Pseudotaxus chienii]
Length = 513
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 60 PHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR--INNPEANK-TAFQ 114
P K+ S G VR ++ I D E GV N G++CIR GP + + +N+P+A T +
Sbjct: 332 PVKSGSCGTVVRNAQLKIIDTETGVSLPRNKPGEICIR-GPEIMKGYLNDPKATAGTIDK 390
Query: 115 FGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+GW +GD+GY D + + VD VKE K
Sbjct: 391 YGWLHTGDVGYIDVDEEIFI-------VDRVKELIK 419
>gi|312141854|ref|YP_004009190.1| acyl-CoA ligase/synthetase [Rhodococcus equi 103S]
gi|311891193|emb|CBH50512.1| acyl-CoA ligase/synthetase [Rhodococcus equi 103S]
Length = 512
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P + SS G+ V E + D NG D G++ R
Sbjct: 305 YNCFGQSEIGPLAT-VLGPDEHEARPSSCGRAVYFVETRVVDANGDDVPDGEPGEILYRS 363
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ Q +NPEA AF+ GWF SGDL D+Q + T VD +K+
Sbjct: 364 PQLCQGYWDNPEATAEAFRDGWFHSGDLVTRDAQGYI-------TVVDRIKDVINTGGIL 416
Query: 153 VASFKVPKKVF 163
VAS +V ++
Sbjct: 417 VASREVEDALY 427
>gi|431929872|ref|YP_007242918.1| acyl-CoA synthetase [Thioflavicoccus mobilis 8321]
gi|431828175|gb|AGA89288.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Thioflavicoccus mobilis 8321]
Length = 522
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P G K SVG P+ EM+I D G G++C+R GP V R PEA + A
Sbjct: 327 PVAGVRKPGSVGLPLPGVEMSIRDPAGAPLPVGEFGEVCVR-GPNVMRGYWRLPEATREA 385
Query: 113 FQFGWFLSGDLGYFDSQ 129
F WF +GDLGY D
Sbjct: 386 FFDDWFRTGDLGYRDED 402
>gi|386759656|ref|YP_006232872.1| hypothetical protein MY9_3083 [Bacillus sp. JS]
gi|384932938|gb|AFI29616.1| hypothetical protein MY9_3083 [Bacillus sp. JS]
Length = 486
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G + +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQACEPFEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+ +FQ GW +GDLGY D++ L + I P EV++V
Sbjct: 350 RERANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
+ +CK +A +K+P K F+ D L +
Sbjct: 410 AEAGVSGAEDRKWGKVPHAYLVLHKPVSAEELRAYCKERLAKYKIPAKFFVLDRLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLLRNRLKDARK 482
>gi|116694129|ref|YP_728340.1| acyl-CoA synthetase [Ralstonia eutropha H16]
gi|113528628|emb|CAJ94975.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Ralstonia
eutropha H16]
Length = 513
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNG 90
LP + C+ S I VL P + +S G+PV E I DE D G
Sbjct: 299 LPALRFYNCYGQSEIGPLAT-VLGPDEHAGRPASAGRPVLNVETRIVDETMQDVPPGELG 357
Query: 91 KMCIREGPMV-QRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
++ R ++ + + PE AF GWF SGDLGY D++ L
Sbjct: 358 EIVHRSPQLLTEYWDKPELTAEAFTGGWFHSGDLGYMDAEGYL 400
>gi|28871240|ref|NP_793859.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28854490|gb|AAO57554.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 562
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 61/187 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P + +VG PV M + D+ GV+ G++CI+ GP V + N P+A A
Sbjct: 378 PYGTQARLGTVGIPVPGTAMKVIDDEGVELAFGERGELCIK-GPQVMKGYWNRPDATAEA 436
Query: 113 FQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV-------------- 145
GWF +GD+ + +++ + + P E++ V
Sbjct: 437 LDAEGWFKTGDIAVIAADGFVSIVDRKKDLIIVSGFNVYPNEIEDVIMTHSKVANCACIG 496
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
K FCK N ++KVPK + + DSL P+ GKI R
Sbjct: 497 VPDERSGEAVKLFVVPRDPSVSVEELKAFCKENFTAYKVPKLIVLRDSLPMTPV-GKILR 555
Query: 180 RIVAELR 186
R ELR
Sbjct: 556 R---ELR 559
>gi|357407978|ref|YP_004919901.1| acyl-CoA synthetase [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386353031|ref|YP_006051278.1| acyl-CoA synthetase [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337762927|emb|CCB71635.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365811110|gb|AEW99325.1| acyl-CoA synthetase [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 532
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 71/187 (37%), Gaps = 56/187 (29%)
Query: 53 VLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
VL P + S G+PV E + D+ G V G++ R M+ N+P
Sbjct: 338 VLRPGEHAARPGSAGRPVLNVETRVVDDAGRPVAPGVTGEIVHRSPQAMLGYWNDPRRTA 397
Query: 111 TAFQFGWFLSGDLGYFDSQ-------RCLNMWK-----ISPTEVDAVKE----------- 147
AF+ GWF SGDLG+ D + R +M K +S EV+ V
Sbjct: 398 EAFRGGWFHSGDLGFLDDEGFLYVVDRKKDMIKTGGENVSGREVEEVLHRHPGVAEAAVF 457
Query: 148 ------------------------------FCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
C+ ++A FKVPK V + +L P +GKI
Sbjct: 458 GIAHPYWVEAVTAAVVPRDGVRPTPEELIAHCRAHLAGFKVPKYVVVTGTLPKNP-SGKI 516
Query: 178 QRRIVAE 184
+R + E
Sbjct: 517 LKRRLRE 523
>gi|148654211|ref|YP_001274416.1| o-succinylbenzoate--CoA ligase [Roseiflexus sp. RS-1]
gi|148566321|gb|ABQ88466.1| O-succinylbenzoate-CoA ligase [Roseiflexus sp. RS-1]
Length = 494
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 73/196 (37%), Gaps = 65/196 (33%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQR--I 103
+ V LP+ K SVG+P+ + + DE G DQ V G + IR GP + R +
Sbjct: 301 AASQVATALPEQVRRKPGSVGRPLLFTSVRVVDEAGHDQPPGVYGDILIR-GPTLMRGYL 359
Query: 104 NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW--------------KISPTEVDAVKE-- 147
P + A WF +GD+GY D+ ++W I P E++ V
Sbjct: 360 GEPPLDAGA----WFATGDIGYLDADG--DLWVVQRRSDLIISGGENIYPAEIEQVLRQH 413
Query: 148 --------------------------------------FCKRNVASFKVPKKVFIADSLS 169
F + +A +K P+ V + D L
Sbjct: 414 PAVADVAVVGVPSPEWGQQVGAVLVLRDPAVDVREILAFSRTRLAGYKQPRIVRVVDELP 473
Query: 170 GKPLTGKIQRRIVAEL 185
+ +GKI R VAEL
Sbjct: 474 -RTASGKIHRAAVAEL 488
>gi|33333111|gb|AAQ11720.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|126501|sp|P08659.1|LUCI_PHOPY RecName: Full=Luciferin 4-monooxygenase; Short=Luciferase
gi|157830188|pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
gi|157831777|pdb|1LCI|A Chain A, Firefly Luciferase
gi|359545808|pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
gi|403071991|pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
gi|11934668|gb|AAG41771.1|AF187995_3 luciferase [Promoter probe vector pJB785TT]
gi|12958275|gb|AAK09278.1|AF311601_1 Photinus pyralis luciferase [Reporter vector pJDL]
gi|16904153|gb|AAL30778.1|AF434923_1 firefly luciferase [Expression vector pIE1-LUC]
gi|16904156|gb|AAL30780.1|AF434924_1 firefly luciferase [Expression vector pACTIN-LUC]
gi|16904159|gb|AAL30782.1|AF434925_1 firefly luciferase [Expression vector 409-FOR]
gi|16904162|gb|AAL30784.1|AF434926_1 firefly luciferase [Expression vector 409-MUT]
gi|16904165|gb|AAL30786.1|AF434927_1 firefly luciferase [Expression vector 410-FOR]
gi|16904168|gb|AAL30788.1|AF434928_1 firefly luciferase [Expression vector 411-FOR]
gi|16904171|gb|AAL30790.1|AF434929_1 firefly luciferase [Expression vector 411-MUT]
gi|16904174|gb|AAL30792.1|AF434930_1 firefly luciferase [Expression vector 412-FOR]
gi|16904177|gb|AAL30794.1|AF434931_1 firefly luciferase [Expression vector 409-REV]
gi|16904180|gb|AAL30796.1|AF434932_1 firefly luciferase [Expression vector 410-REV]
gi|16904183|gb|AAL30798.1|AF434933_1 firefly luciferase [Expression vector 411-REV]
gi|16904186|gb|AAL30800.1|AF434934_1 firefly luciferase [Expression vector 412-REV]
gi|58214|emb|CAA46407.1| luciferase [Cloning vector pGEM-luc]
gi|58217|emb|CAA46419.1| luciferase [Cloning vector pGL2-Basic]
gi|58220|emb|CAA46421.1| luciferase [Cloning vector pGL2-Control]
gi|58223|emb|CAA46423.1| luciferase [Cloning vector pGL2-Enhancer]
gi|58226|emb|CAA46425.1| luciferase [Cloning vector pGL2-Promoter]
gi|160794|gb|AAA29795.1| Luciferase [Photinus pyralis]
gi|433046|gb|AAA03561.1| luciferase [synthetic construct]
gi|806873|gb|AAA66377.1| luciferase [Cloning vector pLUC/LIC]
gi|1244643|gb|AAC53658.1| firefly luciferase [Cloning vector pMH30]
gi|1469270|emb|CAA59283.1| firefly luciferase [Photinus pyralis]
gi|2071945|gb|AAB53627.1| firefly luciferase [Expression vector pBSII-LUCINT]
gi|2190716|gb|AAB64396.1| luciferase [unidentified cloning vector]
gi|2190720|gb|AAB64399.1| luciferase [unidentified cloning vector]
gi|3114617|gb|AAD08913.1| luciferase [Cloning vector pFR-Luc]
gi|3548972|gb|AAC98686.1| luciferase [Cloning vector p53-luc]
gi|3929276|gb|AAC79850.1| luciferase [Luciferase reporter vector pXP2]
gi|3929278|gb|AAC79851.1| luciferase [Luciferase reporter vector pXP1]
gi|3929280|gb|AAC79852.1| luciferase [Luciferase reporter vector pXP2 *SA]
gi|3929282|gb|AAC79853.1| luciferase [Luciferase reporter vector pXP2 *SA *PS]
gi|4097012|gb|AAD10138.1| luciferase [Cloning vector pRcCMV-luc]
gi|7981031|emb|CAB91856.1| firefly luciferase [Cloning vector pHS4]
gi|7981033|emb|CAB91857.1| firefly luciferase [Cloning vector pMAR]
gi|45384790|gb|AAS59437.1| luciferase [Reporter vector pGSA1370]
gi|60285788|gb|AAX18424.1| luciferase [T-DNA vector pDs-Lox]
gi|118640538|gb|ABL09838.1| luciferase [Control vector RD29A-LUC-NOS-At5g52310]
gi|118640540|gb|ABL09839.1| luciferase [Control vector AtGH3-LUC-NOS-At2g23710]
gi|118640542|gb|ABL09840.1| luciferase [Control vector WRKY29-LUC-NOS-At4g23550]
gi|118640544|gb|ABL09841.1| luciferase [Control vector GST6-LUC-NOS-At2g47730]
gi|118640546|gb|ABL09842.1| luciferase [Control vector HSP18.2-LUC-NOS-At5g59720]
gi|118640548|gb|ABL09843.1| luciferase [Control vector ARR6-LUC-NOS-At5g62920]
gi|118640550|gb|ABL09844.1| luciferase [Control vector GCC1-LUC-NOS]
gi|118640552|gb|ABL09845.1| luciferase [Control vector pFRK1-LUC-NOS-At2g19190]
gi|365812237|gb|AEX00085.1| firefly luciferase [Cloning vector pEnEL2Omega-LUC]
gi|374081834|dbj|BAL46512.1| firefly luciferase [Photinus pyralis]
gi|393714876|dbj|BAM28688.1| luciferase [Hepatitis C virus replicon pSGR-JFH2.2/Luc]
gi|409127741|gb|AFV15305.1| firefly luciferase [cloning vector YCplac22 5-1.2-FLuciferase]
gi|442540377|gb|AGC54787.1| luciferase [synthetic construct]
Length = 550
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|55535622|gb|AAV52871.1| luciferase luc2P [Firefly luciferase reporter vector
pGL4.11[luc2P]]
gi|58201870|gb|AAW66985.1| luciferase luc2P [Luciferase reporter vector pGL4.15[luc2P/Hygro]]
gi|76364283|gb|ABA41656.1| luc2P [Firefly luciferase reporter vector pGL4.18[luc2P/Neo]]
gi|76364295|gb|ABA41665.1| luc2P [Firefly luciferase reporter vector pGL4.21[luc2P/Puro]]
gi|108741860|gb|ABG01701.1| luciferase luc2P [Cloning vector pGL4.31 (luc2P/GAL4 UAS/Hygro)]
gi|115342878|gb|ABI94441.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.24[luc2P/minP]]
gi|115342888|gb|ABI94448.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.27[luc2P/minP/Hygro]]
gi|115342896|gb|ABI94454.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.29[luc2P/CRE/Hygro]]
gi|115342900|gb|ABI94457.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.30[luc2P/NFAT-RE/Hygro]]
gi|183181582|gb|ACC44846.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.32[luc2P/NFkB-RE/Hygro]]
gi|224998145|gb|ACN77840.1| luciferase reporter [Reporter vector pGL4.33[luc2P/SRE/Hygro]]
gi|224998148|gb|ACN77842.1| luciferase reporter [Reporter vector pGL4.34[luc2P/SRF-RE/Hygro]]
gi|224998152|gb|ACN77845.1| luciferase reporter [Reporter vector pGL4.36[luc2P/MMTV/Hygro]]
gi|254028437|gb|ACT53137.1| luciferase [Cloning vector pGL4.35[luc2P/9XGAL4UAS/Hygro]]
gi|392934079|gb|AFM92223.1| luciferase [Reporter vector PGL4.47[luc2P/SIE/Hygro]]
gi|392934084|gb|AFM92227.1| luciferase [Reporter vector PGL4.43[luc2P/XRE/Hygro]]
gi|392934088|gb|AFM92230.1| luciferase [Reporter vector PGL4.45[luc2P/ISRE/Hygro]]
gi|392934092|gb|AFM92233.1| luciferase [Reporter vector PGL4.40[luc2P/MRE/Hygro]]
gi|392934096|gb|AFM92236.1| luciferase [Reporter vector PGL4.44[luc2P/AP1/Hygro]]
gi|392934100|gb|AFM92239.1| luciferase [Reporter vector PGL4.48[luc2P/SBE/Hygro]]
gi|392934104|gb|AFM92242.1| luciferase [Reporter vector PGL4.42 [luc2P/HRE/Hygro]]
gi|392934108|gb|AFM92245.1| luciferase [Reporter vector pGL4.39[luc2P/ATF6 RE/Hygro]]
gi|392934112|gb|AFM92248.1| luciferase [Reporter vector pGL4.41[luc2P/HSE/Hygro]]
gi|392934116|gb|AFM92251.1| luciferase [Reporter vector pGL4.37[luc2P/ARE/Hygro]]
gi|392934120|gb|AFM92254.1| luciferase [Reporter vector pGL4.38[luc2P/p53 RE/Hygro]]
gi|393693184|gb|AFN11858.1| luciferase [Reporter vector pGL4.49[luc2P/TCF-LEF RE/Hygro]]
gi|393885978|gb|AFN26006.1| luciferase [Reporter vector pGL4.52[luc2P/STAT5 RE/Hygro]]
Length = 591
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|13094137|dbj|BAB32737.1| luciferase [Cloning vector pPVLUC441]
Length = 355
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 146 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 204
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 205 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 262
>gi|402817952|ref|ZP_10867538.1| long-chain-fatty-acid--CoA ligase LcfB [Paenibacillus alvei DSM 29]
gi|402504464|gb|EJW14993.1| long-chain-fatty-acid--CoA ligase LcfB [Paenibacillus alvei DSM 29]
Length = 554
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 56/184 (30%)
Query: 52 FVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEAN 109
FV+ P K SVG P + E I D G + G++ +R G + NNP+A
Sbjct: 364 FVIEPGAARAKPGSVGMPMLLGEARIIDNGGYVLEKGQVGELALRGGHLFSHYWNNPQAT 423
Query: 110 KTAFQFGWFLSGDLG-------YFDSQRCLNMW-----KISPTEVDAV------------ 145
+ A + GWFL+GDL Y+ R +M + P EV+ +
Sbjct: 424 EAAMRDGWFLTGDLARRDEEGYYYIVGRKKDMIITGGENVYPLEVEQILESHPKVLEAAV 483
Query: 146 -----------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGK 176
K+FC + +KVPK+ +A+ L K + GK
Sbjct: 484 LGIADPKWGEVVVAAVGTGEAAQLTEEELKQFCLARIGKYKVPKRFVLAEELP-KTVVGK 542
Query: 177 IQRR 180
+ ++
Sbjct: 543 LDKK 546
>gi|394992784|ref|ZP_10385555.1| O-succinylbenzoic acid--CoA ligase [Bacillus sp. 916]
gi|393806368|gb|EJD67716.1| O-succinylbenzoic acid--CoA ligase [Bacillus sp. 916]
Length = 487
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLVLTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFEVDGLP-RNASNKLMRHRLNELRK 483
>gi|375363479|ref|YP_005131518.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|451345784|ref|YP_007444415.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
IT-45]
gi|371569473|emb|CCF06323.1| O-succinylbenzoic acid-CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|449849542|gb|AGF26534.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
IT-45]
Length = 487
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLVLTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFKVDGLP-RNASNKLMRHRLNELRK 483
>gi|384440097|ref|YP_005654821.1| Long-chain fatty acid--CoA ligase [Thermus sp. CCB_US3_UF1]
gi|359291230|gb|AEV16747.1| Long-chain fatty acid--CoA ligase [Thermus sp. CCB_US3_UF1]
Length = 548
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 65/205 (31%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE 96
+G S ++ C P GP K SVG P E + DE G + G++ ++
Sbjct: 345 YGLTEASPVTHCN-----PLYGPRKLGSVGLPFPGVEAKVVDEEGKELPPGEVGELILK- 398
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDL------GYF---DSQRCLNM---WKISPTEV 142
GP V + N PE ++ + GW +GDL GYF D ++ + + + I P EV
Sbjct: 399 GPNVMKGYWNRPEESQKTLKDGWLFTGDLAKMDPDGYFYIVDRKKDMIIAGGYNIYPREV 458
Query: 143 D-------AVKE------------------------------------FCKRNVASFKVP 159
+ AV+E FC++N+A++KVP
Sbjct: 459 EEVLYQHPAVQEAAVVGVPDPYRGETVAAFIVLKDEYKGKVSEKDIETFCRQNLAAYKVP 518
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAE 184
+ + D+L K GKI +R +A+
Sbjct: 519 RILQFRDTLP-KSSVGKILKRELAK 542
>gi|33333119|gb|AAQ11724.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333125|gb|AAQ11727.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|478790|pir||S29353 Photinus-luciferin 4-monooxygenase (ATP-hydrolysing) (EC 1.13.12.7)
[similarity] - luminescent click beetle (Pyrophorus
plagiophthalmus)
gi|33333107|gb|AAQ11718.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333109|gb|AAQ11719.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333113|gb|AAQ11721.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|415944684|ref|ZP_11556273.1| AMP-dependent synthetase and ligase [Herbaspirillum frisingense
GSF30]
gi|407758458|gb|EKF68279.1| AMP-dependent synthetase and ligase [Herbaspirillum frisingense
GSF30]
Length = 528
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 31 YLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNG 90
+LPP L F V T +P+ G ++AI +++G + G
Sbjct: 326 FLPPYLHFDDDAHPQARVGTCG--MPRTG------------MQIAILNDDGQELAPFETG 371
Query: 91 KMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
++C+R GP V NNP+AN AF+ WF +GDLG+ D L
Sbjct: 372 EICVR-GPAVFMGYHNNPDANAKAFKHDWFHTGDLGHVDKDGFL 414
>gi|428280561|ref|YP_005562296.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp. natto
BEST195]
gi|291485518|dbj|BAI86593.1| O-succinylbenzoic acid--CoA ligase [Bacillus subtilis subsp. natto
BEST195]
Length = 486
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 58/195 (29%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--I 103
C+ V L P+ K S GKP+ E+ I + V + +G++ ++ GP V +
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPFE-HGEIMVK-GPNVMKSYF 348
Query: 104 NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------ 145
N AN+ +FQ GW +GDLGY D++ L + I P EV++V
Sbjct: 349 NRESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPA 408
Query: 146 ---------------------------------KEFCKRNVASFKVPKKVFIADSLSGKP 172
++CK +A +K+P K F+ D L +
Sbjct: 409 VAEAGVSGAEDKKWGKVPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLP-RN 467
Query: 173 LTGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 468 ASNKLLRNQLKDARK 482
>gi|33333123|gb|AAQ11726.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|148252256|ref|YP_001236841.1| O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. BTAi1]
gi|146404429|gb|ABQ32935.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. BTAi1]
Length = 516
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V L ++ KA S GKPV E+ I +G D G++ +R GP V N P+
Sbjct: 314 VLALDREDAGRKAGSAGKPVLHTEVRIVRPDGTDADVGELGELWVR-GPNVTPGYWNRPD 372
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVD-------AVKE- 147
AN+++F GW +GD D + ++ WK + P EV+ AV E
Sbjct: 373 ANRSSFTDGWLHTGDATRVDDEGFYYIVDRWKDMYISGGENVYPAEVENVLHQLGAVAEA 432
Query: 148 ---------------------------------FCKRNVASFKVPKKVFIADSLSGKPLT 174
C+ N+A FK P+ V D+L + T
Sbjct: 433 AVIGIPDPQWGETGMAIIAVKPGHTLSEAEIHAHCQANLARFKCPRTVRFVDALP-RNAT 491
Query: 175 GKIQR 179
GKI +
Sbjct: 492 GKIHK 496
>gi|311746771|ref|ZP_07720556.1| long-chain-fatty-acid--CoA ligase [Algoriphagus sp. PR1]
gi|126578450|gb|EAZ82614.1| long-chain-fatty-acid--CoA ligase [Algoriphagus sp. PR1]
Length = 563
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 62/202 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
+G TS ++ C P +G + ++G P+ EM + D+ G G++CI+
Sbjct: 358 YGLTETSPVASCN-----PIDGTERNGTIGIPLPNTEMCVMDDEGNMLDIGERGEICIK- 411
Query: 97 GP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV 142
GP M+ N P+ + WF SGD+G D + + + P E+
Sbjct: 412 GPQVMIGYWNRPKETAEVMRGEWFKSGDIGIMDEDGFFKIVDRKKEMILVSGFNVYPNEI 471
Query: 143 ----------------------------------------DAVKEFCKRNVASFKVPKKV 162
D V C ++ ++K+PK+V
Sbjct: 472 EDVIASCEGVLEVGVIGMPDPKSTEKVVAYVVPKGDSLSEDKVIAHCHESLTNYKIPKEV 531
Query: 163 FIADSLSGKPLTGKIQRRIVAE 184
+ D L K GKI RR + E
Sbjct: 532 YFTDELP-KSNVGKILRRKIKE 552
>gi|33333115|gb|AAQ11722.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333117|gb|AAQ11723.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333127|gb|AAQ11728.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333129|gb|AAQ11729.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333131|gb|AAQ11730.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333133|gb|AAQ11731.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|226312168|ref|YP_002772062.1| acyl-CoA synthetase [Brevibacillus brevis NBRC 100599]
gi|226095116|dbj|BAH43558.1| probable O-succinylbenzoate--CoA ligase [Brevibacillus brevis NBRC
100599]
Length = 508
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 1 MTMNPLSIHGAAQ----LTITPYTNVFLFYKGRVYLPPRL---------EFGCFVTSAIS 47
+ M +IH A + T + +V FY G P L FG +
Sbjct: 250 IVMGVPAIHEAIRQSPLFATTSFDSVRWFYNGGAPCPMELIQHFQERGLPFGQGYGLTET 309
Query: 48 VCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRIN 104
TVF++ ++ KA S+GKPV E+ + ++G D G++ ++ GP M + N
Sbjct: 310 SPTVFMIAKEDARRKAGSIGKPVMFCEVRLISDDGKDVGQGEIGELLVK-GPNVMKEYWN 368
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQ 129
PE + GW +GDL FD +
Sbjct: 369 RPEETANTIRDGWLYTGDLARFDEE 393
>gi|91780873|ref|YP_556080.1| acyl-CoA synthetase [Burkholderia xenovorans LB400]
gi|91693533|gb|ABE36730.1| Putative AMP-dependent synthetase and ligase [Burkholderia
xenovorans LB400]
Length = 504
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 67/211 (31%)
Query: 37 EFGCFVTSAISV--------CTVFVLLPKNGP-HKASSVGKPVRR-EMAIPDENGVDQKA 86
EFG T A + C+ L+ + K S G+ + ++AI ++G
Sbjct: 282 EFGSLFTGARYIDAYGLTESCSGDTLMEQGRELDKIGSTGRALAHVQLAIMSDDGRMLAP 341
Query: 87 NVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK-------- 136
+ G++C+R GP V + +PE +F GWF +GD+GY D + L +
Sbjct: 342 GMQGEICVR-GPKVTQGYWKDPEKTARSFVDGWFRTGDVGYMDEEGFLYLTDRKKDMIIS 400
Query: 137 ----ISPTEV-----------------------------------------DAVKEFCKR 151
I+ +EV DA++ C+
Sbjct: 401 GGENIASSEVERVIYQLAEVAEAAVIGAPDPRWGEQVTAVVVLRAGATLTLDALRTHCEG 460
Query: 152 NVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ FK P+++ + D+L P +GK+ +R++
Sbjct: 461 RLGGFKTPRQLILRDALPRNP-SGKVLKRVL 490
>gi|39653983|gb|AAR29591.1| hlucP+ reporter protein [Reporter vector pGL3(R2.1)]
Length = 591
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|392411571|ref|YP_006448178.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Desulfomonile
tiedjei DSM 6799]
gi|390624707|gb|AFM25914.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Desulfomonile
tiedjei DSM 6799]
Length = 552
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 57/148 (38%)
Query: 88 VNGKMCIREGP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
V+G++C + GP M+ +PE + A + GWF SGD+G D R + +
Sbjct: 394 VSGEICGK-GPHVMIMYFKDPEKTEEAMKGGWFHSGDIGVMDDDRYITVVDRKKDMVKTG 452
Query: 135 -------------------------------WKISPTEVDAVK-----------EFCKRN 152
W + T + K + C++
Sbjct: 453 GENVPTREVEEAIYLDKRVQEVAVIGLPHEKWVEAVTAIVVAKQGEKIEEQEIMDLCRQE 512
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRR 180
+A+FK PKKV I D+L P TGKI +R
Sbjct: 513 LAAFKCPKKVIIVDALPKTP-TGKILKR 539
>gi|146343642|ref|YP_001208690.1| O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. ORS 278]
gi|146196448|emb|CAL80475.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. ORS
278]
Length = 516
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V L ++ KA S GKPV E+ I +G D + G++ +R GP V N P+
Sbjct: 314 VLALDREDAARKAGSAGKPVLHTEVRIVRPDGSDAEVGELGELWVR-GPNVTPGYWNRPD 372
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVDAVKE-------- 147
AN+ +F GW +GD D + ++ WK + P EV++V
Sbjct: 373 ANRASFTDGWLHTGDATRVDDEGFYYIVDRWKDMYISGGENVYPAEVESVLHRLSAVAEA 432
Query: 148 ---------------------------------FCKRNVASFKVPKKVFIADSLSGKPLT 174
C+ N+A FK P+ V D+L + T
Sbjct: 433 AVIGIADPQWGETGMAIVAVKPGQTLSEADIFAHCQANLARFKCPRTVRFVDALP-RNAT 491
Query: 175 GKIQR 179
GKI +
Sbjct: 492 GKIHK 496
>gi|119503301|ref|ZP_01625385.1| long-chain-fatty-acid--CoA ligase [marine gamma proteobacterium
HTCC2080]
gi|119460947|gb|EAW42038.1| long-chain-fatty-acid--CoA ligase [marine gamma proteobacterium
HTCC2080]
Length = 567
Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 51 VFVLLPKN-GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEA 108
+F+ P + GP + GK V D G AN G++C+R P+++ IN PEA
Sbjct: 378 IFIERPSSAGPMVPTLEGKCV-------DSEGRKLGANEVGEVCVRGTPVIKGYINRPEA 430
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKR---NVASFKVPKKVF 163
GW +GD+GYFD L + VD K+ R N+ +V +F
Sbjct: 431 TAETIVEGWLQTGDIGYFDEDGFLYL-------VDRAKDMILRGGENIYGAEVENAIF 481
>gi|430757647|ref|YP_007208418.1| 2-succinylbenzoate--CoA ligase [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430022167|gb|AGA22773.1| 2-succinylbenzoate--CoA ligase [Bacillus subtilis subsp. subtilis
str. BSP1]
Length = 486
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G + +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFLCEIKIERDGQVCEPYEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+ +FQ GW +GDLGY D++ L + I P EV++V
Sbjct: 350 RESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
++CK +A +K+P K F+ D L +
Sbjct: 410 AEAGVSGAEDKKWGKVPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLLRNQLKDARK 482
>gi|126635327|dbj|BAF48391.1| luciferase [Photinus pyralis]
Length = 550
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVGRLKSLIKYKGYQVAPAELESI 457
>gi|39653986|gb|AAR29593.1| hlucCP+ reporter protein [Reporter vector pGL3(R2.2)]
Length = 609
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|374572715|ref|ZP_09645811.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM471]
gi|374421036|gb|EHR00569.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. WSM471]
Length = 537
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKM 92
P ++F F VL P + KA S GKPV E + + + D K G++
Sbjct: 315 PSVKFWNFYGQTEIAPLATVLGPADQLRKAGSAGKPVLNVETRVVNSSMEDVKVGEVGEI 374
Query: 93 CIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK- 150
R ++ N+P AF GWF SGDL D + + T VD VK+ K
Sbjct: 375 VHRSPHLLSGYYNDPVKTAAAFSGGWFHSGDLATVDDEGHI-------TVVDRVKDMIKT 427
Query: 151 --RNVASFKVPKKVF 163
NVAS +V + V+
Sbjct: 428 GGENVASREVEEMVY 442
>gi|294633594|ref|ZP_06712152.1| long-chain-fatty-acid-CoA ligase [Streptomyces sp. e14]
gi|292830236|gb|EFF88587.1| long-chain-fatty-acid-CoA ligase [Streptomyces sp. e14]
Length = 483
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 71/194 (36%), Gaps = 60/194 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGP---HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMC 93
FGC V + ++ N P KA S+G P++ E+ + D +G D A G++
Sbjct: 289 FGCPVLEGFGMSETSPVVTFNHPDRPRKAGSIGTPIQDVEVRLLDADGKDVAAGEIGELA 348
Query: 94 IREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISP 139
+R GP V + N PE A GW SGDL D L + + + P
Sbjct: 349 VR-GPNVMKGYWNRPEETAAALPDGWLRSGDLARADEDGYLYIVDRKKDMIIRGGYNVYP 407
Query: 140 TEV-----------------------------------------DAVKEFCKRNVASFKV 158
E+ D ++++ K VA++K
Sbjct: 408 REIEEVLHEHPAVGMAAVLGVPHASLGEDVAAAVVLRPGAQATPDELRQYVKDRVAAYKY 467
Query: 159 PKKVFIADSLSGKP 172
P+ V++ D L P
Sbjct: 468 PRHVWLVDRLLMGP 481
>gi|55535625|gb|AAV52873.1| luciferase luc2CP [Firefly luciferase reporter vector
pGL4.12[luc2CP]]
gi|58201874|gb|AAW66988.1| luciferase luc2CP [Luciferase reporter vector
pGL4.16[luc2CP/Hygro]]
gi|76364287|gb|ABA41659.1| luc2CP [Firefly luciferase reporter vector pGL4.19[luc2CP/Neo]]
gi|76364299|gb|ABA41668.1| luc2CP [Firefly luciferase reporter vector pGL4.22[luc2CP/Puro]]
gi|115342881|gb|ABI94443.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.25[luc2CP/minP]]
gi|115342892|gb|ABI94451.1| firefly luciferase [Firefly luciferase reporter vector
pGL4.28[luc2CP/minP/Hygro]]
Length = 609
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|256395079|ref|YP_003116643.1| AMP-dependent synthetase and ligase [Catenulispora acidiphila DSM
44928]
gi|256361305|gb|ACU74802.1| AMP-dependent synthetase and ligase [Catenulispora acidiphila DSM
44928]
Length = 532
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEAN 109
VL P++ K S G+ + E + D+ G + G++ R GP M+ N+PE
Sbjct: 339 VLGPEDQERKPGSAGRAALNVETRVVDDAGNEVPRGEVGEIVHR-GPHTMLGYWNDPERT 397
Query: 110 KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLG D + L + VD K+ K NVAS +V + V+
Sbjct: 398 AEAFRGGWFHSGDLGVMDEEGYLAV-------VDRKKDMIKTGGENVASREVEETVY 447
Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 141 EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
E + V EFC+ +A FK PKKV I +L P +GK+ +R + E+
Sbjct: 482 EPEEVVEFCRARLAGFKTPKKVVIVPALPKNP-SGKVLKRELREIH 526
>gi|387316227|gb|AFJ73468.1| 4-coumarate: coenzyme A ligase, partial [Cycas rumphii]
Length = 475
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 34 PRLEFG--CFVTSA---ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQ-KA 86
PR EFG +T A IS+C F P P K+ S G +R E+ I D + +
Sbjct: 299 PRAEFGQGYGMTEAGPVISMCLGFAKHPF--PAKSGSCGTVIRNAELKIVDPDTWESFTY 356
Query: 87 NVNGKMCIREGPMVQR--INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVD 143
N G++C+R GP + + +N+PE+ +T + GW +GD+GY D + + VD
Sbjct: 357 NQPGEICVR-GPQIMKGYLNDPESTARTIDKDGWLHTGDIGYVDHNEEVFI-------VD 408
Query: 144 AVKEFCKRNVASFKVP 159
VKE K F+VP
Sbjct: 409 RVKEIIKYK--GFQVP 422
>gi|47420060|gb|AAT27379.1| destabilized luciferase [Cloning vector pdLucGAL4]
gi|47420062|gb|AAT27380.1| destabilized luciferase [Cloning vector pdLucLRH-1]
gi|47420064|gb|AAT27381.1| destabilized luciferase [Cloning vector pdLucFXR]
Length = 591
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|17530182|gb|AAL40737.1| tissue factor/luciferase fusion protein [synthetic construct]
Length = 845
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 636 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 694
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 695 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 752
>gi|69111664|gb|AAZ03394.1| Aqp4-Luc fusion protein [Reporter vector pmuAqp4-Luc]
Length = 852
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 643 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 701
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 702 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 759
>gi|432329673|ref|YP_007247816.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Methanoregula
formicicum SMSP]
gi|432136382|gb|AGB01309.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Methanoregula
formicicum SMSP]
Length = 513
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 66/210 (31%)
Query: 21 NVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKA---SSVGKPV-RREMAI 76
+V+ + R ++P +G T I T LP+ PH +SVG V E+ I
Sbjct: 286 SVWEAFDKRYHIPVANSYGLSETIVIGSGTT--TLPEY-PHLTKNFTSVGVAVGYTEIKI 342
Query: 77 PDENGVDQK--ANVNGKMCIREGPMVQR--INNPEANKTAFQ-FGWFLSGDLGYFDSQRC 131
D +++ +G++ +R GP V + N P+A + F+ GWFL+GD+G D+
Sbjct: 343 VDTGDPEKELPHGESGEIALR-GPAVAKGYWNLPDATRDVFRPDGWFLTGDIGNLDADGI 401
Query: 132 LNM------------WKISPTEVDAV---------------------------------- 145
L + WKI PTEV+ V
Sbjct: 402 LCITDRKKDMIIMSGWKIYPTEVENVIVRHPAVADVAVFGVPDERKGEFAVAAVVLRPGM 461
Query: 146 -------KEFCKRNVASFKVPKKVFIADSL 168
FC+ VA +KVP+K+ I +SL
Sbjct: 462 SLGQAEFDVFCRERVAGYKVPRKLLIVESL 491
>gi|126464300|ref|YP_001045413.1| AMP-dependent synthetase and ligase [Rhodobacter sphaeroides ATCC
17029]
gi|126106111|gb|ABN78641.1| AMP-dependent synthetase and ligase [Rhodobacter sphaeroides ATCC
17029]
Length = 520
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P+ K S+G+PV ++A+ DE+ + G++C+R GP M +N PEA A
Sbjct: 331 PETAMSKPLSIGQPVPGVQVALLDEDLREVPPGALGEICVR-GPALMSGYLNRPEATAEA 389
Query: 113 FQFGWFLSGDLGYFDSQRCLNM 134
F GW +GDLG D + +++
Sbjct: 390 FAGGWLHTGDLGRVDEEGFVHL 411
>gi|404420636|ref|ZP_11002373.1| acyl-CoA synthetase [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
gi|403659872|gb|EJZ14484.1| acyl-CoA synthetase [Mycobacterium fortuitum subsp. fortuitum DSM
46621]
Length = 527
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P A + G+PV E I D+N V G++ R M+ +++ +
Sbjct: 334 LGPAEQDAHAGAAGRPVVNVETVILDDNDVPVAPGTVGEIAHRSPHLMLGYLDDEDKTAQ 393
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF GWF SGDLG++D L++ VD K+ K NVAS +V + ++
Sbjct: 394 AFAGGWFHSGDLGFYDEHGLLHV-------VDRKKDMIKTGGENVASREVEEVLY 441
>gi|386303741|gb|AFJ04811.1| Renilla-firefly protein fusion [synthetic construct]
Length = 862
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKA 86
R +LP G ++ T +L+ G K +VGK P + + G
Sbjct: 642 RFHLP-----GIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 696
Query: 87 NVNGKMCIREGPMVQR--INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM--------- 134
N G++C+R GPM+ +NNPEA N + GW SGD+ Y+D +
Sbjct: 697 NQRGELCVR-GPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK 755
Query: 135 ---WKISPTEVDAV 145
++++P E++++
Sbjct: 756 YKGYQVAPAELESI 769
>gi|268591030|ref|ZP_06125251.1| O-succinylbenzoate-CoA ligase [Providencia rettgeri DSM 1131]
gi|291313836|gb|EFE54289.1| O-succinylbenzoate-CoA ligase [Providencia rettgeri DSM 1131]
Length = 505
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQRI--NNPEANKTAFQFGWF 118
K SS G PV ++ I + G + AN G + ++ ++QR ++P AN T+F GWF
Sbjct: 322 KKSSSGTPVPGLQVTIRSDKGENLPANYTGNIWVKGDVVIQRYWPDSP-ANTTSFNDGWF 380
Query: 119 LSGDLGYFDSQRCL 132
+GD+GY D L
Sbjct: 381 FTGDIGYMDDDGFL 394
>gi|37991672|dbj|BAD00047.1| Fusion protein, Feo [Hepatitis C virus]
Length = 832
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 356 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 414
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 415 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 472
>gi|410616462|ref|ZP_11327454.1| long-chain acyl-CoA synthetase [Glaciecola polaris LMG 21857]
gi|410164171|dbj|GAC31592.1| long-chain acyl-CoA synthetase [Glaciecola polaris LMG 21857]
Length = 552
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 60/177 (33%)
Query: 65 SVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWFLSG 121
S+G P+ ++ + D++GVD K G+M ++ GP M+ +N PEA + + GW +G
Sbjct: 378 SIGLPLPSTDIRLVDDDGVDVKEGEPGEMLVK-GPQVMLGYLNRPEATEEIMKDGWLATG 436
Query: 122 DL------GYF---DSQRCLNM---WKISPTEVDAVK----------------------- 146
D+ GYF D ++ + + + + P E++ V
Sbjct: 437 DIARCDENGYFYIVDRKKDMILVSGFNVFPNEIEEVAVMHEDIVEVAAVGIPHEASGEVV 496
Query: 147 -----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
+ C++++ +KVPKKV D L K GKI RR ELR
Sbjct: 497 KLFAVRRNDNLSEQDVIDHCRKHLTGYKVPKKVEFRDELP-KSNVGKILRR---ELR 549
>gi|366054207|ref|ZP_09451929.1| acyl-CoA synthetase family protein [Lactobacillus suebicus KCTC
3549]
Length = 511
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 28/155 (18%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP 98
G +T S CT+ P N K S GK E+AI + G++ +R
Sbjct: 308 GYGMTETSSQCTIN---PFNA-QKIGSAGKAFGTELAILVNGKYETNDTEIGEIVVRGDH 363
Query: 99 MVQRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNMW-----KISPTEVDAV- 145
++ +P+ T+FQ GWFL+GDLGY D R +M K++P EV ++
Sbjct: 364 VISSYIDPQP--TSFQDGWFLTGDLGYLDEDGYLFVKGRSKDMINRGGEKVAPAEVQSIL 421
Query: 146 --KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
+F + VA +P D L G+ +T I+
Sbjct: 422 SQLDFIEE-VAVIGMP------DDLYGEAVTAVIK 449
>gi|420239121|ref|ZP_14743467.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Rhizobium sp.
CF080]
gi|398082453|gb|EJL73203.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Rhizobium sp.
CF080]
Length = 834
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 42 VTSAISVCTVFVLLPKNGPHKASSVG----KPVRREMAIPDENGVDQKANVNGKMCIREG 97
VT AI+V + P++G +A+ +G + +++I ++ G + G++C G
Sbjct: 338 VTGAITVLPPALHSPEDG--EAARIGTCGMERTGMQVSIQNDAGEEVGPYETGEICCI-G 394
Query: 98 PMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
P V +NPEAN+ AF+ GWF +GDLG+ D++ L
Sbjct: 395 PAVFAGYYDNPEANEKAFRNGWFRTGDLGHMDAEGFL 431
>gi|323137324|ref|ZP_08072402.1| AMP-dependent synthetase and ligase [Methylocystis sp. ATCC 49242]
gi|322397311|gb|EFX99834.1| AMP-dependent synthetase and ligase [Methylocystis sp. ATCC 49242]
Length = 503
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 61/197 (30%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPV--RREMAIPDENG-VDQKANVNGKMCIRE---GPM 99
+S C+ F+ P S G+P R A+P E G + G + +R G M
Sbjct: 307 MSECSTFISSGPTTPVHPGSPGRPQPGRVVAALPQEGGETPLPSGETGVLAVRRDDPGLM 366
Query: 100 VQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVD---- 143
+ N PE + AF+ WF+SGDL FD++ ++ +++SP EV+
Sbjct: 367 LGYWNRPEEEREAFRGAWFVSGDLVEFDAEGYMHHHGRADEVMNAGGFRVSPAEVEKCLL 426
Query: 144 --------------------------------------AVKEFCKRNVASFKVPKKVFIA 165
A+ C ++A++K P+ V
Sbjct: 427 AFDHVAEAAAAERPGRDADATIIRAYVVMRDGAPRDEAAILAHCHEHLAAYKRPRSVTFL 486
Query: 166 DSLSGKPLTGKIQRRIV 182
D+L + GK+ R+++
Sbjct: 487 DALP-RNANGKLNRKLL 502
>gi|448746472|ref|ZP_21728139.1| AMP-dependent synthetase/ligase [Halomonas titanicae BH1]
gi|445565810|gb|ELY21918.1| AMP-dependent synthetase/ligase [Halomonas titanicae BH1]
Length = 533
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
++ I + G + AN G++ + GP V +NPEAN+ +F+ GWFL+GDLG+ D +
Sbjct: 357 QVQIQNSEGREVPANETGEIAVI-GPAVFAGYFDNPEANRKSFRNGWFLTGDLGHMDEE 414
>gi|69111702|gb|AAZ03395.1| Aqp4-Luc fusion protein [Reporter vector praAqp4-Luc]
Length = 847
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 638 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 696
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 697 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 754
>gi|398824224|ref|ZP_10582565.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. YR681]
gi|398225146|gb|EJN11427.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. YR681]
Length = 534
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V VL ++ KA S GKPV E+ I +G D G++ ++ GP + N PE
Sbjct: 332 VLVLDREDAARKAGSAGKPVLHTEVRIVRPDGSDAAIGELGELWVK-GPNITPGYWNRPE 390
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVDAV 145
ANKT+F GW +GD D + ++ WK + P EV+ V
Sbjct: 391 ANKTSFTDGWLHTGDATRIDEEGFYYIVDRWKDMYISGGENVYPAEVENV 440
>gi|332637577|ref|ZP_08416440.1| acyl-CoA synthetase family protein [Weissella cibaria KACC 11862]
Length = 502
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 49 CTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEA 108
++ L P + P K VG PV E+A+ EN V N G++ +R ++ +P+
Sbjct: 311 ASLIALNPFDAP-KPGKVGLPVATEIALLVENQVTNVPNQTGEILLRGDHVITDYVDPK- 368
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+AF GW +GDLG FD L + K++P ++AV
Sbjct: 369 -PSAFHDGWLRTGDLGRFDDDGYLKIVGRIKDIISRGGEKVAPAAIEAV 416
>gi|325971602|ref|YP_004247793.1| long-chain-fatty-acid--CoA ligase [Sphaerochaeta globus str. Buddy]
gi|324026840|gb|ADY13599.1| Long-chain-fatty-acid--CoA ligase [Sphaerochaeta globus str. Buddy]
Length = 579
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 13/76 (17%)
Query: 64 SSVGKPV-RREMAI--PDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWF 118
+SVGK V + E+ I PD +G NG + I+ GPMV + NNPEA K + GW
Sbjct: 386 TSVGKKVPQVEVKIVNPDSDG-------NGIIYIK-GPMVMQGYYNNPEATKEVLEDGWL 437
Query: 119 LSGDLGYFDSQRCLNM 134
+GD+GY D+Q L +
Sbjct: 438 NTGDVGYQDAQGYLYL 453
>gi|256861690|gb|ACV32531.1| codon optimized luciferase RE8 [synthetic construct]
Length = 548
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILVTPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|209229|gb|AAA72988.1| luciferase/kanamycin resistance protein [synthetic construct]
Length = 821
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 351 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 409
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 410 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 467
>gi|398789247|ref|ZP_10551159.1| fatty acid CoA ligase [Streptomyces auratus AGR0001]
gi|396991616|gb|EJJ02754.1| fatty acid CoA ligase [Streptomyces auratus AGR0001]
Length = 514
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRC 131
E+AI DE+G D A +G++C+R ++Q PE + GW +GD+G+ D +
Sbjct: 340 EVAIRDESGRDLPAGEHGEVCVRSDMIMQGYWKQPELTAEVLRDGWLHTGDIGFLDDEGY 399
Query: 132 LNM 134
L +
Sbjct: 400 LTI 402
>gi|217968853|ref|YP_002354087.1| acyl-CoA synthetase [Thauera sp. MZ1T]
gi|217506180|gb|ACK53191.1| AMP-dependent synthetase and ligase [Thauera sp. MZ1T]
Length = 522
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 82/210 (39%), Gaps = 60/210 (28%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNG 90
LP + C+ S I+ VL P+ + +S G+P+ E I D + D A G
Sbjct: 312 LPALQLYNCYGQSEIAPLAT-VLRPEEHAERPASAGRPIFNVETRIVDSDLNDVPAGEMG 370
Query: 91 KMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDS--------------------- 128
++ R ++ + PE +F+ GWF SGD+GY D
Sbjct: 371 EIVHRSPQLMSGYWDKPEETAASFRDGWFRSGDVGYLDEAGYLYITDRIKDIIKTGGVVV 430
Query: 129 -----QRCL----------------NMWKISPTEVDAVKEFCKRN-----------VASF 156
+ CL W + T V A+K+ + +A+F
Sbjct: 431 ASREVEECLYTHPAVAEVAVIGLPDERWIEAVTAVVALKQGAQATAAELIAHVHARLAAF 490
Query: 157 KVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
KVPK+VF + + + +GK+ +R ELR
Sbjct: 491 KVPKRVFFVEDMP-RNASGKLLKR---ELR 516
>gi|393760466|ref|ZP_10349276.1| AMP-binding protein [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393161323|gb|EJC61387.1| AMP-binding protein [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 651
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEA 108
+VFV + ++G +A +VG PV+ GV+ + NG++ +R G + NPE+
Sbjct: 391 SVFVCVQEDGHVRADTVGPPVK---------GVEIRVADNGEIQVRSPGLFKEYYRNPES 441
Query: 109 NKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKV 162
+F + GW+ +GD GY D+ L + +D K+ K S PK +
Sbjct: 442 TAESFTEDGWYHTGDAGYLDTDGQLKI-------IDRAKDVGKLADGSLFAPKYI 489
>gi|307941838|ref|ZP_07657192.1| 2-succinylbenzoate--CoA ligase [Roseibium sp. TrichSKD4]
gi|307774935|gb|EFO34142.1| 2-succinylbenzoate--CoA ligase [Roseibium sp. TrichSKD4]
Length = 511
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 42 VTSAISVCTVFVLL-PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPM 99
V + C + + L ++ + S GKP E + D++G D N +G++ I+ GP
Sbjct: 303 VYGSTETCPIAIYLKSEDAVSQLGSTGKPALHCEARVVDDHGTDIADNQSGEILIK-GPN 361
Query: 100 VQR--INNPEANKTAFQFGWFLSGDLGYFDS 128
+ R NN +K + + GWF +GD+GY D+
Sbjct: 362 LMRGYWNNETESKRSLREGWFYTGDVGYRDA 392
>gi|159898216|ref|YP_001544463.1| AMP-dependent synthetase/ligase [Herpetosiphon aurantiacus DSM 785]
gi|159891255|gb|ABX04335.1| AMP-dependent synthetase and ligase [Herpetosiphon aurantiacus DSM
785]
Length = 560
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFLSGDLGYF--DSQ 129
EMA+ D G G++ IR M+ N P+AN AF++GWF SGD G++ D+Q
Sbjct: 380 EMAVHDPQGHALSEGERGEIVIRGHNVMMGYFNRPDANAEAFKYGWFRSGDEGFYQWDAQ 439
>gi|441514917|ref|ZP_20996729.1| putative fatty-acid--CoA ligase [Gordonia amicalis NBRC 100051]
gi|441450313|dbj|GAC54690.1| putative fatty-acid--CoA ligase [Gordonia amicalis NBRC 100051]
Length = 489
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P +G K +VG + R+ + I D +G D G++ I GP M +NNPEA
Sbjct: 302 PVDGVRKLGTVGPALPRQRIRIVDADGHDVPTGETGEVII-SGPTVMAGYLNNPEATAET 360
Query: 113 FQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN 152
+ GW +GD+G D+ L + VD +K+ R
Sbjct: 361 IRDGWLHTGDIGRLDADGYLQI-------VDRIKDMIIRG 393
>gi|2911797|gb|AAC39365.1| 4-coumarate:CoA ligase 2 [Populus trichocarpa x Populus deltoides]
Length = 548
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
I++C F P K+ + G VR EM I D E G Q N G++CIR +++
Sbjct: 344 IAMCLAFAKEPFE--IKSGACGTVVRNAEMKIVDPETGESQPRNKTGEICIRGCQIMKGY 401
Query: 103 INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNM-----------WKISPTEVDAV 145
+N+PEA +T + GW +GD+GY D + ++++P E++A+
Sbjct: 402 LNDPEATERTIDKDGWLHTGDIGYIDEDELFIVDRLKELIKYKGFQVAPAELEAM 456
>gi|387316072|gb|AFJ73428.1| 4-coumarate: coenzyme A ligase, partial [Larix gmelinii var.
principis-rupprechtii]
Length = 457
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR +M I D E G + G++CIR GP + +
Sbjct: 323 LSMCLAFAKEPF--PMKSGSCGTVVRNAQMKIIDPETGASLPYSEPGEICIR-GPQIMKG 379
Query: 103 -INNPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+ E+ T + GW +GD+GY D + + VD VKE K F+VP
Sbjct: 380 YLNDDESTATTIDKDGWLHTGDIGYIDEDEEVFI-------VDRVKEIIKYK--GFQVP 429
>gi|345854888|ref|ZP_08807676.1| acyl-CoA synthetase [Streptomyces zinciresistens K42]
gi|345633644|gb|EGX55363.1| acyl-CoA synthetase [Streptomyces zinciresistens K42]
Length = 499
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R LP + CF S I VL P + S G+PV + + DE+G + +
Sbjct: 288 RARLPGLAFYNCFGQSEIGPLA-MVLAPDEHKGRLESCGRPVLFVDARLVDEDGEEVPDD 346
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQ 129
G++ R + + ++PEA AF+ GWF SGDL D+
Sbjct: 347 SAGEIVYRSPQLCEGYWDDPEATAAAFREGWFRSGDLAVRDAH 389
>gi|339328283|ref|YP_004687975.1| long-chain-fatty-acid--CoA ligase LcfB [Cupriavidus necator N-1]
gi|338170884|gb|AEI81937.1| long-chain-fatty-acid--CoA ligase LcfB [Cupriavidus necator N-1]
Length = 523
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 58 NGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF 115
N P ++ + P E+ + D+ G + A G++ IR GP V + NPEA FQ
Sbjct: 335 NRPLSSTGIALP-ETEIVVMDDEGHELPAGETGELWIR-GPGVIKGYYKNPEATAAEFQD 392
Query: 116 GWFLSGDLGYFDSQR 130
G++ SGDLGY D R
Sbjct: 393 GFWKSGDLGYIDEDR 407
>gi|195118487|ref|XP_002003768.1| GI21303 [Drosophila mojavensis]
gi|193914343|gb|EDW13210.1| GI21303 [Drosophila mojavensis]
Length = 535
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 40 CFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGP 98
+TSA ++ V+ G AS+ GKP+ ++ I D++G + N G++ + G
Sbjct: 321 AIITSAYAMTEAGVITLNVGVQNASATGKPMAGMKIRIVDDDGKNLAHNEVGEILVHTGM 380
Query: 99 MVQ-RINNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM 134
NP A F GW +GDLGYF+ LN+
Sbjct: 381 HWNGYYGNPVATSQILDFNGWIHTGDLGYFNDDNLLNV 418
>gi|380849778|gb|AFE85520.1| firefly luciferase-polyprotein fusion protein [synthetic construct]
Length = 1889
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|329941830|ref|ZP_08291095.1| acyl-CoA synthetase [Streptomyces griseoaurantiacus M045]
gi|329299547|gb|EGG43447.1| acyl-CoA synthetase [Streptomyces griseoaurantiacus M045]
Length = 538
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 34 PRLEF-GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGK 91
P L F CF S I + VL P+ + S G+PV E + DE G D G+
Sbjct: 328 PHLAFHNCFGQSEIGPLAM-VLGPEEHKGRMDSCGRPVLFVEAKVVDEEGRDVPDGERGE 386
Query: 92 MCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+ R + + + PE AF+ GWF SGDL D+ T VD VK+
Sbjct: 387 IVYRSPQLCEGYWDKPEETAEAFRDGWFHSGDLAVRDAHGYF-------TVVDRVKDVIN 439
Query: 151 RN---VASFKVPKKVFIADSLSGKPLTG 175
+AS +V ++ +S++ + G
Sbjct: 440 SGGVLIASRQVEDVLYTHESVAEAAVIG 467
>gi|398305756|ref|ZP_10509342.1| O-succinylbenzoic acid--CoA ligase [Bacillus vallismortis DV1-F-3]
Length = 486
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G K +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMQKLGSAGKPLFSCEIKIERDGQACKPFEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+++FQ GW +GDLGY DS+ L + I P EV++V
Sbjct: 350 RESANESSFQNGWLKTGDLGYLDSEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
+CK +A +K+P K F D L +
Sbjct: 410 AEAGVSGAEDKKWGKVPHAFLVLHKPVSAEDLTAYCKERLAKYKIPVKFFRLDRLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLLRNQLKDARK 482
>gi|375100495|ref|ZP_09746758.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora cyanea NA-134]
gi|374661227|gb|EHR61105.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora cyanea NA-134]
Length = 525
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
+++I D+ G + A G++C+ GP V +N+ +A+ AF+ GWF +GDLG D +
Sbjct: 352 QVSIQDDEGTELPAGRQGEICV-AGPAVFAGYLNDAQADAAAFRDGWFRTGDLGLLDDEG 410
Query: 131 CL 132
L
Sbjct: 411 YL 412
>gi|331699221|ref|YP_004335460.1| 4-coumarate--CoA ligase [Pseudonocardia dioxanivorans CB1190]
gi|326953910|gb|AEA27607.1| 4-coumarate--CoA ligase [Pseudonocardia dioxanivorans CB1190]
Length = 556
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTAFQFGWF 118
K +VG PV E+AI D +GV+ G++CIR GP M N PE GW
Sbjct: 375 KPGTVGLPVPDTEIAILDPDGVEVPVGEEGEVCIR-GPQVMAGYRNRPEETAATLVDGWL 433
Query: 119 LSGDLGYFDSQRCLNM 134
SGD+G D L +
Sbjct: 434 HSGDVGVLDEDGYLRI 449
>gi|37521519|ref|NP_924896.1| long-chain fatty-acid-CoA ligase [Gloeobacter violaceus PCC 7421]
gi|35212516|dbj|BAC89891.1| gll1950 [Gloeobacter violaceus PCC 7421]
Length = 532
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR--EMAIPD-ENGVDQKANVNGKMCIR 95
G +T +S T L P GP + S+GKP+ E+AI D + G G++ IR
Sbjct: 301 GYGLTECVSSTT---LNPLPGPVRPGSIGKPLPGGPELAICDPQTGALLGERQVGELLIR 357
Query: 96 EGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQ 129
GP V + N PEA+ F GW SGDLGY D+
Sbjct: 358 -GPHVFKGYHNRPEASAAVFLDGWLRSGDLGYRDAD 392
>gi|199599406|ref|ZP_03212801.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
rhamnosus HN001]
gi|199589697|gb|EDY97808.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
rhamnosus HN001]
Length = 510
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 54 LLPKNGPHKASSVGKPVRREMAIPDENGV-DQKANVNGKMCIREGPMVQRINNPEANKTA 112
L P + P K S GKPV E+ I +G +K V G++ +R ++ P + +
Sbjct: 316 LNPIHAP-KIGSAGKPVGTELRIKLADGTFTKKPFVEGEIVLRGDHVIHDYLEP--HPES 372
Query: 113 FQFGWFLSGDLGYFDSQRCL 132
F+ GWFL+GDLGY D L
Sbjct: 373 FENGWFLTGDLGYLDQDGYL 392
>gi|352106929|ref|ZP_08961689.1| acyl-CoA synthetase [Halomonas sp. HAL1]
gi|350597525|gb|EHA13660.1| acyl-CoA synthetase [Halomonas sp. HAL1]
Length = 517
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE 96
+ C+ S I+ VL P+ + +S G+P+ E I D + D +G++ R
Sbjct: 314 YNCYGQSEIAPLAT-VLRPEEHAERPASAGRPILTVETRIVDLDMNDVSPGEHGEIVHRS 372
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+++ + P + AFQ WF SGD+GYFD L + VD +K+
Sbjct: 373 PQLMKGYWDKPAMTEEAFQGDWFHSGDVGYFDEAGYLYV-------VDRIKDVINTGGVL 425
Query: 153 VASFKVPKKVFIADSLSGKPLTGK 176
VAS +V + +F ++S + G+
Sbjct: 426 VASREVEEGLFKHPAVSEVAVIGQ 449
>gi|392584835|gb|EIW74177.1| atromentin synthetase [Coniophora puteana RWD-64-598 SS2]
Length = 957
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVN-GKMCI 94
FG T A + V L + H+ ++G PV EM I D E+GV +++ G++ +
Sbjct: 354 FGMTETCAGCIYDVVDLAENSPKHEFLALGAPVHGCEMRIVDPEDGVTPRSDGQPGELQV 413
Query: 95 REGPM--VQRINNPEANKTAF-QFGWFLSGDLGYFDS 128
R GPM V+ NNPEA K++F + GW+ +GD+G ++
Sbjct: 414 R-GPMIFVRYYNNPEATKSSFVEGGWYRTGDIGIIEN 449
>gi|227533551|ref|ZP_03963600.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|227188810|gb|EEI68877.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
Length = 510
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|221370035|ref|YP_002521131.1| AMP-dependent synthetase and ligase [Rhodobacter sphaeroides KD131]
gi|221163087|gb|ACM04058.1| AMP-dependent synthetase and ligase [Rhodobacter sphaeroides KD131]
Length = 506
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P+ K S+G+PV ++A+ DE+ + G++C+R GP M +N PEA A
Sbjct: 317 PETAMGKPLSIGQPVPGVQVALLDEDLREVPPGALGEICVR-GPALMSGYLNRPEATAEA 375
Query: 113 FQFGWFLSGDLGYFDSQRCLNM 134
F GW +GDLG D + +++
Sbjct: 376 FAGGWLHTGDLGRVDEEGFVHL 397
>gi|304310639|ref|YP_003810237.1| linear gramicidin synthetase [gamma proteobacterium HdN1]
gi|301796372|emb|CBL44580.1| similar to linear gramicidin synthetase [gamma proteobacterium HdN1]
Length = 2144
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 58 NGPHKAS----SVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
N PH++S +G + E+ I DE+ K V G+M IR GP+V +NNP+AN
Sbjct: 1038 NEPHRSSHSFVDLGTLMPGTEIRITDEHNHLVKEGVIGRMQIR-GPVVTSGYLNNPDANT 1096
Query: 111 TAF-QFGWFLSGDLGYFDSQRCL 132
AF GWF SGDLG+ ++R +
Sbjct: 1097 EAFVGEGWFNSGDLGFIWNRRLI 1119
>gi|371534669|gb|AEX32786.1| Coumaroyl-CoA ligase [Vitis vinifera]
Length = 570
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+S+C F P P K+ S G VR E+ + D E G N G++CIR + M
Sbjct: 368 LSMCLGFAKQPF--PTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMKGY 425
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA + GW +GD+GY D + + VD VKE K F+VP
Sbjct: 426 LNDPEATASTIDVDGWLHTGDIGYVDDDEEVFI-------VDRVKELIK--FKGFQVP 474
>gi|429207667|ref|ZP_19198924.1| Long-chain-fatty-acid--CoA ligase [Rhodobacter sp. AKP1]
gi|428189431|gb|EKX57986.1| Long-chain-fatty-acid--CoA ligase [Rhodobacter sp. AKP1]
Length = 520
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P+ K S+G+PV ++A+ DE+ + G++C+R GP M +N PEA A
Sbjct: 331 PETAMGKPLSIGQPVPGVQVALLDEDLREVPPGALGEICVR-GPALMSGYLNRPEATAEA 389
Query: 113 FQFGWFLSGDLGYFDSQRCLNM 134
F GW +GDLG D + +++
Sbjct: 390 FAGGWLHTGDLGRVDEEGFVHL 411
>gi|418011839|ref|ZP_12651589.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei Lc-10]
gi|410551536|gb|EKQ25590.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei Lc-10]
Length = 510
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|344339618|ref|ZP_08770546.1| Long-chain-fatty-acid--CoA ligase [Thiocapsa marina 5811]
gi|343800354|gb|EGV18300.1| Long-chain-fatty-acid--CoA ligase [Thiocapsa marina 5811]
Length = 523
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P G K S+G P+ E I D G + G++C+R GP V + N PEA + +
Sbjct: 326 PIAGVRKPGSIGLPIPTVETRILDPEGREVPDGTYGEVCVR-GPSVMQGYHNQPEATRES 384
Query: 113 FQFGWFLSGDLGYFDSQ 129
F WF +GDLGY D+
Sbjct: 385 FFGDWFRTGDLGYRDAD 401
>gi|114321637|ref|YP_743320.1| AMP-dependent synthetase and ligase [Alkalilimnicola ehrlichii
MLHE-1]
gi|114228031|gb|ABI57830.1| AMP-dependent synthetase and ligase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 581
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 68/198 (34%)
Query: 51 VFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPE 107
V + P G + +VG PV E+ I D+N A G++ +R GP V P+
Sbjct: 382 VVAVNPPQGEARLGTVGLPVPGTEVRIVDDNDRPVPAGERGEVVVR-GPQVFDGYWKQPQ 440
Query: 108 ANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------- 142
++ A + GWF +GD+G D Q L + + + P EV
Sbjct: 441 ESEHALRGGWFHTGDVGVMDEQGYLRIVDRKKDMIDVGGFNVFPQEVEEALLEHPAIIMA 500
Query: 143 -------------------------------DAVKEFCKRNVASFKVPKKVFIADSLSGK 171
DA+++F R++ +K+P+++ DSL
Sbjct: 501 AVVGVPAGGDAGDEQVVAYVVCDERESAPDEDALRQFLNRHLTRYKIPRRILFRDSL--- 557
Query: 172 PLT--GKIQRRIVAELRK 187
P+T GK+ RR ELR+
Sbjct: 558 PVTTVGKVLRR---ELRE 572
>gi|418072292|ref|ZP_12709564.1| Acyl-CoA synthetase family protein [Lactobacillus rhamnosus R0011]
gi|423078488|ref|ZP_17067168.1| AMP-binding enzyme [Lactobacillus rhamnosus ATCC 21052]
gi|357537543|gb|EHJ21567.1| Acyl-CoA synthetase family protein [Lactobacillus rhamnosus R0011]
gi|357550734|gb|EHJ32544.1| AMP-binding enzyme [Lactobacillus rhamnosus ATCC 21052]
Length = 510
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 54 LLPKNGPHKASSVGKPVRREMAIPDENGV-DQKANVNGKMCIREGPMVQRINNPEANKTA 112
L P + P K S GKPV E+ I +G +K V G++ +R ++ P + +
Sbjct: 316 LNPIHAP-KIGSAGKPVGTELRIKLADGTFTKKPFVEGEIVLRGDHVIHDYLEP--HPES 372
Query: 113 FQFGWFLSGDLGYFDSQRCL 132
F+ GWFL+GDLGY D L
Sbjct: 373 FENGWFLTGDLGYLDQDGYL 392
>gi|383769190|ref|YP_005448253.1| putative long-chain-fatty-acid--CoA ligase [Bradyrhizobium sp.
S23321]
gi|381357311|dbj|BAL74141.1| putative long-chain-fatty-acid--CoA ligase [Bradyrhizobium sp.
S23321]
Length = 537
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKM 92
P ++F F VL P++ KA S GKPV E + + D K G++
Sbjct: 315 PNVKFWNFYGQTEIAPLATVLRPEDQLRKAGSAGKPVLNVETRVVNTAMEDVKVGEVGEI 374
Query: 93 CIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK- 150
R ++ N+P AF GWF SGDL D + + T VD VK+ K
Sbjct: 375 VHRSPHLLSGYYNDPVKTAAAFTGGWFHSGDLATVDDEGHI-------TVVDRVKDMIKT 427
Query: 151 --RNVASFKVPKKVF 163
NVAS +V + V+
Sbjct: 428 GGENVASREVEEMVY 442
>gi|213971408|ref|ZP_03399522.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv. tomato
T1]
gi|301383595|ref|ZP_07232013.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv. tomato
Max13]
gi|302059978|ref|ZP_07251519.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv. tomato
K40]
gi|302132083|ref|ZP_07258073.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213923851|gb|EEB57432.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv. tomato
T1]
Length = 562
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 61/187 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P + +VG PV M + D+ GV+ G++CI+ GP V + N P+A A
Sbjct: 378 PYGTQARLGTVGIPVPGTAMKVIDDEGVELPFGERGELCIK-GPQVMKGYWNRPDATAEA 436
Query: 113 FQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV-------------- 145
GWF +GD+ + +++ + + P E++ V
Sbjct: 437 LDAEGWFKTGDIAVIAADGFVSIVDRKKDLIIVSGFNVYPNEIEDVIMTHPKVSNCACIG 496
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
K FCK N ++KVPK + + DSL P+ GKI R
Sbjct: 497 VPDERSGEAVKLFVVPRDPSVSVEELKAFCKENFTAYKVPKLIVLRDSLPMTPV-GKILR 555
Query: 180 RIVAELR 186
R ELR
Sbjct: 556 R---ELR 559
>gi|418006173|ref|ZP_12646135.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei UW1]
gi|410544422|gb|EKQ18749.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei UW1]
Length = 510
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|421770059|ref|ZP_16206762.1| Long-chain-fatty-acid--CoA ligase [Lactobacillus rhamnosus LRHMDP2]
gi|421773315|ref|ZP_16209962.1| Long-chain-fatty-acid--CoA ligase [Lactobacillus rhamnosus LRHMDP3]
gi|411182221|gb|EKS49374.1| Long-chain-fatty-acid--CoA ligase [Lactobacillus rhamnosus LRHMDP3]
gi|411183106|gb|EKS50247.1| Long-chain-fatty-acid--CoA ligase [Lactobacillus rhamnosus LRHMDP2]
Length = 510
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 54 LLPKNGPHKASSVGKPVRREMAIPDENGV-DQKANVNGKMCIREGPMVQRINNPEANKTA 112
L P + P K S GKPV E+ I +G +K V G++ +R ++ P + +
Sbjct: 316 LNPIHAP-KIGSAGKPVGTELRIKLADGTFTKKPFVEGEIVLRGDHVIHDYLEP--HPES 372
Query: 113 FQFGWFLSGDLGYFDSQRCL 132
F+ GWFL+GDLGY D L
Sbjct: 373 FENGWFLTGDLGYLDQDGYL 392
>gi|417997237|ref|ZP_12637498.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei M36]
gi|418014935|ref|ZP_12654519.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei Lpc-37]
gi|410533271|gb|EKQ07953.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei M36]
gi|410552457|gb|EKQ26481.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei Lpc-37]
Length = 510
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|229552758|ref|ZP_04441483.1| possible o-succinylbenzoate--CoA ligase [Lactobacillus rhamnosus
LMS2-1]
gi|258540627|ref|YP_003175126.1| acyl-CoA synthetase family protein [Lactobacillus rhamnosus Lc 705]
gi|385836267|ref|YP_005874042.1| AMP-binding protein [Lactobacillus rhamnosus ATCC 8530]
gi|229313863|gb|EEN79836.1| possible o-succinylbenzoate--CoA ligase [Lactobacillus rhamnosus
LMS2-1]
gi|257152303|emb|CAR91275.1| Acyl-CoA synthetase family protein [Lactobacillus rhamnosus Lc 705]
gi|355395759|gb|AER65189.1| AMP-binding enzyme family protein [Lactobacillus rhamnosus ATCC
8530]
Length = 510
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 54 LLPKNGPHKASSVGKPVRREMAIPDENGV-DQKANVNGKMCIREGPMVQRINNPEANKTA 112
L P + P K S GKPV E+ I +G +K V G++ +R ++ P + +
Sbjct: 316 LNPIHAP-KIGSAGKPVGTELRIKLADGTFTKKPFVEGEIVLRGDHVIHDYLEP--HPES 372
Query: 113 FQFGWFLSGDLGYFDSQRCL 132
F+ GWFL+GDLGY D L
Sbjct: 373 FENGWFLTGDLGYLDQDGYL 392
>gi|27382975|ref|NP_774504.1| acyl-CoA synthetase [Bradyrhizobium japonicum USDA 110]
gi|27356148|dbj|BAC53129.1| bll7864 [Bradyrhizobium japonicum USDA 110]
Length = 537
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANK 110
VL P++ KA S GKPV E + + D K G++ R ++ N+P
Sbjct: 334 VLRPEDQLRKAGSAGKPVLNVETRVVNTAMEDVKVGEVGEIVHRSPHLLSGYYNDPVKTA 393
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF GWF SGDL D + + T VD VK+ K NVAS +V + V+
Sbjct: 394 AAFSGGWFHSGDLATVDGEGHI-------TVVDRVKDMIKTGGENVASREVEEMVY 442
>gi|410584056|ref|ZP_11321161.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Thermaerobacter subterraneus DSM 13965]
gi|410504918|gb|EKP94428.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Thermaerobacter subterraneus DSM 13965]
Length = 567
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
R LP + C+ S I+ VL P+ + +S G+PV E + D + D
Sbjct: 352 RQRLPGVAVYNCYGQSEIAPLAT-VLRPEEHDARPASAGRPVLHVETRVVDPDMRDVPPG 410
Query: 88 VNGKMCIREGPM-VQRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
G++ R + V PE AFQ GWF SGDLGY D +
Sbjct: 411 QLGEIVHRSPQLLVGYWEKPEETAEAFQGGWFHSGDLGYMDEE 453
>gi|1469266|emb|CAA59281.1| firefly luciferase [Photinus pyralis]
Length = 550
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGGVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|441207968|ref|ZP_20973729.1| fadD2 [Mycobacterium smegmatis MKD8]
gi|440627703|gb|ELQ89510.1| fadD2 [Mycobacterium smegmatis MKD8]
Length = 527
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
L P A + G+PV E AI D++ G++ R M+ +++
Sbjct: 332 ALGPDEQDAHAGAAGRPVINVETAILDDDNRPVPPGEVGEIAHRSPHLMLGYLDDEAKTA 391
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGY+D L++ VD K+ K NVAS +V + V+
Sbjct: 392 EAFRGGWFHSGDLGYYDEHGLLHV-------VDRKKDMIKTGGENVASREVEEAVY 440
>gi|418000099|ref|ZP_12640297.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei T71499]
gi|410537345|gb|EKQ11920.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei T71499]
Length = 510
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|386284345|ref|ZP_10061567.1| long-chain-fatty-acid--CoA ligase [Sulfurovum sp. AR]
gi|385344630|gb|EIF51344.1| long-chain-fatty-acid--CoA ligase [Sulfurovum sp. AR]
Length = 559
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 60/187 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPD-ENGVDQ-KANVNGKMCIREGPMVQR--INNPEANK 110
P N P+K +S+G P+ E I D ENG D+ + G++ I+ GP + + PE
Sbjct: 366 PMNAPNKPNSIGVPMPDTECRIVDIENGKDEIEVGKEGELIIK-GPQLMKGYWMQPEMTN 424
Query: 111 TAFQFGWFLSGDL------GYF---DSQRCLNMWK---ISPTEVDAV------------- 145
A + GW +GD+ GYF D ++ + + K +SPTEV+ V
Sbjct: 425 EAIREGWLHTGDIVKMDEEGYFYVVDRKKDIIIVKGLNVSPTEVEKVCCTHPKVEDAAVV 484
Query: 146 ----------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
E+ ++ +A FKVP V D+L K + GK+
Sbjct: 485 GIPHEYKGEEIKAFIVLKEGEAAEAYEIIEYLRKKLARFKVPSSVEFVDALP-KNVMGKL 543
Query: 178 QRRIVAE 184
RR++ E
Sbjct: 544 MRRLLRE 550
>gi|379061389|gb|AFC89540.1| 4-coumarate: coenzyme A ligase 4 [Populus tomentosa]
Length = 556
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
I++C F P K+ + G VR EM I D E G Q N G++CIR +++
Sbjct: 344 IAMCLAFAKEPFE--IKSGACGTVVRNAEMKIVDPETGDSQPRNKAGEICIRGSQIMKGY 401
Query: 103 INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+N+PEA +T + GW +GD+GY D VD +KE K
Sbjct: 402 LNDPEATERTIDKDGWLHTGDIGYIDEDELFI--------VDRLKELIK 442
>gi|301067452|ref|YP_003789475.1| acyl-CoA synthetase [Lactobacillus casei str. Zhang]
gi|300439859|gb|ADK19625.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
casei str. Zhang]
Length = 510
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|258509431|ref|YP_003172182.1| acyl-CoA synthetase family protein [Lactobacillus rhamnosus GG]
gi|385829067|ref|YP_005866839.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase [Lactobacillus
rhamnosus GG]
gi|257149358|emb|CAR88331.1| Acyl-CoA synthetase family protein [Lactobacillus rhamnosus GG]
gi|259650712|dbj|BAI42874.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase [Lactobacillus
rhamnosus GG]
Length = 510
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 54 LLPKNGPHKASSVGKPVRREMAIPDENGV-DQKANVNGKMCIREGPMVQRINNPEANKTA 112
L P + P K S GKPV E+ I +G +K V G++ +R ++ P + +
Sbjct: 316 LNPIHAP-KIGSAGKPVGTELRIKLADGTFTKKPFVEGEIVLRGDHVIHDYLEP--HPES 372
Query: 113 FQFGWFLSGDLGYFDSQRCL 132
F+ GWFL+GDLGY D L
Sbjct: 373 FENGWFLTGDLGYLDQDGYL 392
>gi|417994075|ref|ZP_12634410.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei CRF28]
gi|410530731|gb|EKQ05499.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei CRF28]
Length = 510
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|384266621|ref|YP_005422328.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387899678|ref|YP_006329974.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens Y2]
gi|380499974|emb|CCG51012.1| O-succinylbenzoic acid-CoA ligase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387173788|gb|AFJ63249.1| O-succinylbenzoic acid--CoA ligase [Bacillus amyloliquefaciens Y2]
Length = 487
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVD-------AVKE--------------------------------FCKRNVASFKVP 159
P EV+ AV E FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLVLTSSVSSEELTVFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFEVDELP-RNASNKLMRHRLNELRK 483
>gi|239630302|ref|ZP_04673333.1| acyl-CoA synthetase /AMP-acid ligase II [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|417981643|ref|ZP_12622308.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei 12A]
gi|417984460|ref|ZP_12625082.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei 21/1]
gi|239527914|gb|EEQ66915.1| acyl-CoA synthetase /AMP-acid ligase II [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|410521782|gb|EKP96740.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei 12A]
gi|410525254|gb|EKQ00157.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei 21/1]
Length = 510
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|118472739|ref|YP_887203.1| acyl-CoA synthetase [Mycobacterium smegmatis str. MC2 155]
gi|118174026|gb|ABK74922.1| feruloyl-CoA synthetase [Mycobacterium smegmatis str. MC2 155]
Length = 521
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
L P A + G+PV E AI D++ G++ R M+ +++
Sbjct: 326 ALGPDEQDAHAGAAGRPVINVETAILDDDNRPVPPGEVGEIAHRSPHLMLGYLDDEAKTA 385
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGY+D L++ VD K+ K NVAS +V + V+
Sbjct: 386 EAFRGGWFHSGDLGYYDEHGLLHV-------VDRKKDMIKTGGENVASREVEEAVY 434
>gi|417990752|ref|ZP_12631218.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei A2-362]
gi|410533687|gb|EKQ08354.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei A2-362]
Length = 510
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|417987719|ref|ZP_12628273.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei 32G]
gi|410522541|gb|EKP97485.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei 32G]
Length = 510
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQILEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|392310426|ref|ZP_10272960.1| coenzyme A ligase [Pseudoalteromonas citrea NCIMB 1889]
Length = 498
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 65 SVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSG 121
++GKP+ ++ I D G NV GKM ++ GP V + NP+A K FQ GW+ SG
Sbjct: 317 TLGKPLEGYDIDIRDAAGHSVADNVCGKMWVK-GPSVAQGYWRNPQATKDKFQLGWYDSG 375
Query: 122 DLGYFDSQ-------RCLNMWKIS-----PTEVDA 144
DL D Q R +++K++ P E++A
Sbjct: 376 DLALRDVQGNIHFKGRADDLFKVNGRWVIPAEIEA 410
>gi|329895575|ref|ZP_08271071.1| Long-chain-fatty-acid--CoA ligase [gamma proteobacterium IMCC3088]
gi|328922254|gb|EGG29604.1| Long-chain-fatty-acid--CoA ligase [gamma proteobacterium IMCC3088]
Length = 522
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 56/167 (33%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGP-MVQRINNPEANKTAFQFGWFLSGDLGYFDSQ-- 129
E + D GV+ G++ +R M+ N PEA GW L+GD GY + +
Sbjct: 346 EAKVCDSTGVEVPMGETGEIWLRSANNMLHYFNLPEATAKTLVGGWVLTGDAGYINEEGF 405
Query: 130 -----RCLNM-----WKISPTEVDAVK--------------------------------- 146
R +M I P EV+ V
Sbjct: 406 IFLRDRIKDMVLSGGENIYPVEVENVLAQLPGVRETAVIGVPDEKYGEALLAFIAMNEGF 465
Query: 147 ---------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+FC+ +A +K+P+K+ I D+L P TGKIQ+ ++ E
Sbjct: 466 TPPSTQEMIDFCRDKLAGYKIPRKLEIIDALPRNP-TGKIQKMVLRE 511
>gi|387316233|gb|AFJ73471.1| 4-coumarate: coenzyme A ligase, partial [Sequoia sempervirens]
Length = 390
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 60 PHKASSVGKPVRREMA--IPDENGVDQKANVNGKMCIREGPMVQR--INNPEAN-KTAFQ 114
P K+ S G VR I E GV N G++CIR GP + + +N+PEA +T +
Sbjct: 313 PVKSGSCGTVVRNAQIKIIDTETGVSLPHNKPGEICIR-GPEIMKGYLNDPEATTRTIDK 371
Query: 115 FGWFLSGDLGYFDSQR 130
GW +GD+GY D
Sbjct: 372 EGWLHTGDVGYIDDDE 387
>gi|33445809|gb|AAQ19142.1| luciferase [Pyrophorus mellifluus]
Length = 543
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+GK P E G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGKVTPFMAVKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|302527568|ref|ZP_07279910.1| dicarboxylate-CoA ligase PimA [Streptomyces sp. AA4]
gi|302436463|gb|EFL08279.1| dicarboxylate-CoA ligase PimA [Streptomyces sp. AA4]
Length = 529
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
+L P KA S G+ + E I DE G + G++ R + + E
Sbjct: 336 ILRPHEQLAKAGSAGRASINVETRIVDEEGRELPPGEVGEIVHRSPHATLGYYEDEEKTA 395
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIADS 167
AF+ GWF SGDLG D + L++ VD K+ K NVAS +V + +++ D
Sbjct: 396 AAFEGGWFHSGDLGVLDEEGYLSV-------VDRKKDMIKTGGENVASREVEEALYLLDG 448
Query: 168 LS 169
++
Sbjct: 449 VA 450
>gi|29827799|ref|NP_822433.1| acyl-CoA synthetase [Streptomyces avermitilis MA-4680]
gi|29604900|dbj|BAC68968.1| putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase
[Streptomyces avermitilis MA-4680]
Length = 499
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNG 90
LP + CF S I ++ VL P + S G+PV E + DE+G + G
Sbjct: 291 LPELAFYNCFGQSEIGPLSM-VLGPDEHKRRMDSCGRPVLFVEARVVDESGKEVADGEQG 349
Query: 91 KMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFC 149
++ R + + + PE AF+ GWF SGDL D+ T VD VK+
Sbjct: 350 EIVYRSSQLCEGYWDKPEETAEAFRDGWFRSGDLAVRDAAGYF-------TVVDRVKDVI 402
Query: 150 KRN---VASFKVPKKVFIADSLSGKPLTG 175
VAS +V ++ + ++ + G
Sbjct: 403 NSGGVLVASRQVEDALYTHEGVAEAAVIG 431
>gi|399987219|ref|YP_006567568.1| AMP-dependent synthetase and ligase [Mycobacterium smegmatis str.
MC2 155]
gi|399231780|gb|AFP39273.1| AMP-dependent synthetase and ligase [Mycobacterium smegmatis str.
MC2 155]
Length = 527
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANK 110
L P A + G+PV E AI D++ G++ R M+ +++
Sbjct: 332 ALGPDEQDAHAGAAGRPVINVETAILDDDNRPVPPGEVGEIAHRSPHLMLGYLDDEAKTA 391
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF+ GWF SGDLGY+D L++ VD K+ K NVAS +V + V+
Sbjct: 392 EAFRGGWFHSGDLGYYDEHGLLHV-------VDRKKDMIKTGGENVASREVEEAVY 440
>gi|392415455|ref|YP_006452060.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Mycobacterium
chubuense NBB4]
gi|390615231|gb|AFM16381.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Mycobacterium
chubuense NBB4]
Length = 528
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 12/135 (8%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKM 92
P+L F L P A + G+PV E I DE+ G++
Sbjct: 315 PQLRLWNFYGQTEMAPLASALGPDEQDAHAGAAGRPVINVETVILDESDTPVAVGTVGEI 374
Query: 93 CIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK- 150
R M+ +++ AF GWF SGDLGY+D L++ VD K+ K
Sbjct: 375 AHRSPHLMLGYLDDARKTAEAFSGGWFHSGDLGYYDEHGLLHV-------VDRKKDMIKT 427
Query: 151 --RNVASFKVPKKVF 163
NVAS +V + ++
Sbjct: 428 GGENVASREVEEVLY 442
>gi|386837158|ref|YP_006242216.1| acyl-CoA synthetase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374097459|gb|AEY86343.1| acyl-CoA synthetase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451790517|gb|AGF60566.1| acyl-CoA synthetase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 529
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 63 ASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLS 120
A SVG+P E+ + D +G++ + GP V R + P AF GWF +
Sbjct: 351 AGSVGRPTAGEIRVLDAGRQPCAVGTDGELWV-HGPAVARGYLAEPAETAAAFHDGWFRT 409
Query: 121 GDLGYFDSQRCLNMW------------KISPTEVDAV 145
GDLGY D+ L + KISP V+ V
Sbjct: 410 GDLGYQDAAGRLYLTGRIKNLINRGGEKISPEHVEEV 446
>gi|406665916|ref|ZP_11073686.1| Long-chain-fatty-acid--CoA ligase [Bacillus isronensis B3W22]
gi|405386098|gb|EKB45527.1| Long-chain-fatty-acid--CoA ligase [Bacillus isronensis B3W22]
Length = 506
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFL 119
KA SVGK + ++ I D NGVD G++CI+ E M + N E + GW
Sbjct: 323 KAGSVGKALPNTQLKIVDANGVDLPVGEIGEICIKGEQIMKGYLKNDEETMQVIKNGWLY 382
Query: 120 SGDLGYFDSQRCLNMWK------------ISPTEVDAVKEFCKRNVASFKVPKKVFIADS 167
SGDLG D L + I P EV+ V +++P+ + A
Sbjct: 383 SGDLGRLDEDGYLYIIDRKKDLIIRGGENIYPIEVENV---------LYQIPQVIDAAVI 433
Query: 168 LSGKPLTGKIQRRIV 182
P+ G+I + IV
Sbjct: 434 GIPDPIYGEIPKAIV 448
>gi|386285774|ref|ZP_10062982.1| long-chain-fatty-acid--CoA ligase [gamma proteobacterium BDW918]
gi|385281227|gb|EIF45131.1| long-chain-fatty-acid--CoA ligase [gamma proteobacterium BDW918]
Length = 523
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 37 EFGCFVTSAISVCTVFVLLPK----NGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGK 91
+F F S S + +L P N H+ +S GKP+ E+ I D +G AN G+
Sbjct: 307 KFMQFYGSTESGGAITLLRPDDHDLNNEHRLTSCGKPLPLIEIKIIDTDGQTLPANQPGE 366
Query: 92 MCIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQ 129
M I+ + + EA + F GW+ SGD+GYFD +
Sbjct: 367 MLIKLPSIAKGYWQKGEAWQEVFNTGWYKSGDVGYFDDE 405
>gi|33333141|gb|AAQ11735.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+GK P E G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGKVTPFMAVKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDQDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|385265968|ref|ZP_10044055.1| hypothetical protein MY7_2737 [Bacillus sp. 5B6]
gi|385150464|gb|EIF14401.1| hypothetical protein MY7_2737 [Bacillus sp. 5B6]
Length = 487
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCVPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGAEDPKWGKVPHAFLVLTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFEVDGLP-RNASNKLMRHRLNELRK 483
>gi|126734258|ref|ZP_01750005.1| AMP-dependent synthetase and ligase [Roseobacter sp. CCS2]
gi|126717124|gb|EBA13988.1| AMP-dependent synthetase and ligase [Roseobacter sp. CCS2]
Length = 573
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 69/177 (38%), Gaps = 57/177 (32%)
Query: 59 GPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF 115
G + +S+G PV E+ DE+G D G++ I +GP + + N PE Q
Sbjct: 386 GKTRLNSIGVPVPGTEVKCVDEDGADVPQGEPGEL-IAKGPQIMKGYWNKPEETGKTIQN 444
Query: 116 GWFLSGDLGYFDS-------QRCLNMWKIS-----PTEV--------------------- 142
GW L+GD+G D R +M +S P E+
Sbjct: 445 GWLLTGDIGVMDDDGYFRVVDRKKDMILVSGFNVYPNEIEDTIAAHPGVEEVAVIGVPDG 504
Query: 143 -------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
DA++ +CK ++ ++KVPK V D L K GKI R+
Sbjct: 505 ASGEAVKAFIVKRDDTLDKDAMRAYCKEHLTAYKVPKAVEFRDELP-KSNVGKILRK 560
>gi|33333135|gb|AAQ11732.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333137|gb|AAQ11733.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333139|gb|AAQ11734.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+GK P E G N G++C++ GPMV + +NN EA K A G
Sbjct: 355 KSGSLGKVTPFMAVKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVEATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDQDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|296804524|ref|XP_002843114.1| acyl-CoA synthetases/AMP-acid ligases II [Arthroderma otae CBS
113480]
gi|238845716|gb|EEQ35378.1| acyl-CoA synthetases/AMP-acid ligases II [Arthroderma otae CBS
113480]
Length = 569
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 28/111 (25%)
Query: 62 KASSVGKPVRREMA-IPDENGVDQKANVNGKMCIREGPMV--------------QRINNP 106
KA SVG+ A I D +G D A G++ I+ GP V + +NP
Sbjct: 357 KAGSVGRLFAGHQARIVDGDGKDVTAGQPGQIIIK-GPTVFIYGGVVSLTTRDREYKDNP 415
Query: 107 EANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
EA K AF+ GWF SGD+G DS L + ++SP E++ V
Sbjct: 416 EATKAAFKDGWFCSGDIGRMDSDGFLWLTGRKKELIKYKGLQVSPAELEDV 466
>gi|329893928|ref|ZP_08269963.1| Long-chain-fatty-acid--CoA ligase [gamma proteobacterium IMCC3088]
gi|328923383|gb|EGG30700.1| Long-chain-fatty-acid--CoA ligase [gamma proteobacterium IMCC3088]
Length = 573
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGK 91
P L +G T+A+ VL N SS G+ P E I D G + G+
Sbjct: 362 PGLGYGLTETNALGAFNSGVLYLAN----PSSTGRAVPAVTEFKIIDSTGNHLGPDEIGE 417
Query: 92 MCIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+C++ V N PEA AF GWF +GDLG D L++ VD +K+
Sbjct: 418 VCMKSPANAVGYWNKPEATAVAFVDGWFHTGDLGKLDENGFLSI-------VDRIKDIII 470
Query: 151 RN 152
R
Sbjct: 471 RG 472
>gi|194700706|gb|ACF84437.1| unknown [Zea mays]
gi|194703976|gb|ACF86072.1| unknown [Zea mays]
gi|194704886|gb|ACF86527.1| unknown [Zea mays]
gi|223947631|gb|ACN27899.1| unknown [Zea mays]
gi|223948319|gb|ACN28243.1| unknown [Zea mays]
gi|224031337|gb|ACN34744.1| unknown [Zea mays]
gi|413935829|gb|AFW70380.1| putative AMP-dependent synthetase and ligase superfamily protein
[Zea mays]
Length = 555
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+++C F P P K+ S G VR E+ I D + G N G++CIR E M
Sbjct: 356 LAMCLAFAKEPY--PVKSGSCGTVVRNAELKIVDPDTGAALGRNQPGEICIRGEQIMKGY 413
Query: 103 INNPEANK-TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PE+ K T + GW +GD+GY D + + VD +KE K F+VP
Sbjct: 414 LNDPESTKNTIDKDGWLHTGDIGYVDDDDEIFI-------VDRLKEIIKYK--GFQVP 462
>gi|304392924|ref|ZP_07374855.1| putative peroxisomal-coenzyme A synthetase [Ahrensia sp. R2A130]
gi|303294922|gb|EFL89291.1| putative peroxisomal-coenzyme A synthetase [Ahrensia sp. R2A130]
Length = 482
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 66/185 (35%), Gaps = 56/185 (30%)
Query: 56 PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQ 114
P +G K S G P E+ I D ++ G++C+R +++ NP+A A
Sbjct: 296 PMHGLRKIGSPGIPYGNEVIIADPLQMELPCGEEGEICVRGSNVLREYRQNPQATADAIT 355
Query: 115 -FGWFLSGDLGYFDSQRCL------------NMWKISPTEV------------------- 142
GW +GDLG D + I+P EV
Sbjct: 356 PVGWLRTGDLGRMDEDGFVFVTGRLKELIIKGGENIAPREVDDALYTHPDVIEAGAFARA 415
Query: 143 ----------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
DA+ + C+ + +FK P V I L P +GKIQR
Sbjct: 416 CADYGQRVEAAVKLTEGSTLTSDALVKLCRERIGNFKAPDHVHILSELPKGP-SGKIQRL 474
Query: 181 IVAEL 185
+AEL
Sbjct: 475 TLAEL 479
>gi|113866892|ref|YP_725381.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Ralstonia
eutropha H16]
gi|113525668|emb|CAJ92013.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Ralstonia
eutropha H16]
Length = 523
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P SS G + E+ + DE G + G++ IR GP V + NPEA T
Sbjct: 331 PGQSNRHLSSTGIALPETEIVVMDEQGHELPVGETGELWIR-GPGVIKGYYKNPEATATE 389
Query: 113 FQFGWFLSGDLGYFDSQR 130
FQ G++ SGDLGY D R
Sbjct: 390 FQGGFWKSGDLGYVDEDR 407
>gi|317485073|ref|ZP_07943955.1| AMP-binding enzyme [Bilophila wadsworthia 3_1_6]
gi|316923608|gb|EFV44812.1| AMP-binding enzyme [Bilophila wadsworthia 3_1_6]
Length = 2095
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 64 SSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFLSG 121
+SVGKPV+ E+ I D++G A+ G + IR + + +NPEA +++F WF +G
Sbjct: 382 TSVGKPVQYCEVRIADKDGKPLPADRVGVVEIRGDNVISDYFDNPEATESSFNGEWFSTG 441
Query: 122 DLGYFDSQ 129
D+G+ D++
Sbjct: 442 DMGFMDAE 449
>gi|344174659|emb|CCA86464.1| putative o-succinylbenzoate--CoA ligase [Ralstonia syzygii R24]
Length = 497
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 59/186 (31%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQ 114
P K S G+PV + I E+G +G++CIR GP V E +TA
Sbjct: 311 PGRERQKIGSTGRPVPYVAIEIRSEDGRTLLPGEHGEICIR-GPKVTPGYWKEPERTASV 369
Query: 115 F---GWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV-------------- 145
F GWF +GD+GY D L + I+ +EV+ V
Sbjct: 370 FYPNGWFRTGDVGYLDEDGFLYLTDRLKDMIISGGENIASSEVERVLYLLPQISEAVAIG 429
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
C+ +A FKVP+++ I D+L P +GK+
Sbjct: 430 LPDERWGEQVAAVVVLRPGATLSEQEMMSHCRSLLAGFKVPRRLIITDTLPRTP-SGKVL 488
Query: 179 RRIVAE 184
+R++ E
Sbjct: 489 KRVLRE 494
>gi|393199653|ref|YP_006461495.1| acyl-CoA synthetase/AMP-acid ligase II [Solibacillus silvestris
StLB046]
gi|327438984|dbj|BAK15349.1| acyl-CoA synthetase/AMP-acid ligase II [Solibacillus silvestris
StLB046]
Length = 506
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 23/135 (17%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFL 119
KA SVGK + ++ I D NGVD G++CI+ E M + N E + GW
Sbjct: 323 KAGSVGKALPNTQLKIVDANGVDLPVGEIGEICIKGEQIMKGYLKNDEETMQVIKNGWLY 382
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEVDAVKEFCKRNVASFKVPKKVFIADS 167
SGDLG D L + I P EV+ V +++P+ + A
Sbjct: 383 SGDLGRLDEDGYLYIVDRKKDLIIRGGENIYPIEVENV---------LYQIPQVIDAAVI 433
Query: 168 LSGKPLTGKIQRRIV 182
P+ G+I + IV
Sbjct: 434 GIPDPIYGEIPKAIV 448
>gi|306836642|ref|ZP_07469608.1| possible long-chain-fatty-acid--CoA ligase [Corynebacterium
accolens ATCC 49726]
gi|304567472|gb|EFM43071.1| possible long-chain-fatty-acid--CoA ligase [Corynebacterium
accolens ATCC 49726]
Length = 610
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 77 PDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNM 134
P GV + N +G++CI+ G + + N+PEA + AF+ GW+ +GDLG D L +
Sbjct: 410 PPLGGVTLRINDDGEVCIKGGMVFEGYWNDPEATEEAFEDGWYNTGDLGEIDDDGKLTI 468
>gi|398821420|ref|ZP_10579883.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. YR681]
gi|398227918|gb|EJN14077.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Bradyrhizobium sp. YR681]
Length = 537
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 53 VLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANK 110
VL P + KA S GKPV E + + D K G++ R ++ N+P
Sbjct: 334 VLRPDDQLRKAGSAGKPVLNVETRVVNTAMEDVKVGEVGEIVHRSPHLLSGYYNDPVKTA 393
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
AF GWF SGDL D + + T VD VK+ K NVAS +V + V+
Sbjct: 394 AAFTGGWFHSGDLATVDDEGHI-------TVVDRVKDMIKTGGENVASREVEEMVY 442
>gi|319949163|ref|ZP_08023252.1| acyl-CoA synthetase [Dietzia cinnamea P4]
gi|319437149|gb|EFV92180.1| acyl-CoA synthetase [Dietzia cinnamea P4]
Length = 518
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P+ + +S G+PV E + DE+G++ G++ R
Sbjct: 318 YNCFGQSEIGPLAC-VLRPEEHDDRPASAGRPVFFVEARVVDESGLEVADGERGEVVYRS 376
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN-- 152
P + R N P+A + AF+ GWF SGDL D+ + + VD +K+
Sbjct: 377 -PQLCRGYWNKPDATREAFRDGWFHSGDLVVRDAGGYIEV-------VDRIKDVINTGGV 428
Query: 153 -VASFKVPKKVF 163
VAS +V V+
Sbjct: 429 LVASREVEDAVY 440
>gi|423667635|ref|ZP_17642664.1| O-succinylbenzoate-CoA ligase [Bacillus cereus VDM034]
gi|423676301|ref|ZP_17651240.1| O-succinylbenzoate-CoA ligase [Bacillus cereus VDM062]
gi|401303300|gb|EJS08862.1| O-succinylbenzoate-CoA ligase [Bacillus cereus VDM034]
gi|401307422|gb|EJS12847.1| O-succinylbenzoate-CoA ligase [Bacillus cereus VDM062]
Length = 496
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 60/143 (41%), Gaps = 25/143 (17%)
Query: 7 SIHGA----AQLTITPYTNVFLFYKGRVYLPPRLE-------------FGCFVTSAISVC 49
+IH A A+ T +V FY G P L FG TS
Sbjct: 247 TIHQALINCAKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSP---- 302
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNP 106
TVF+L + K S+GKPV + + DEN + G++ IR GP V + N P
Sbjct: 303 TVFMLSEEEARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKGYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDSQ 129
+A + Q GW +GDL D +
Sbjct: 362 DATEETIQDGWLYTGDLAKVDEE 384
>gi|387316080|gb|AFJ73432.1| 4-coumarate: coenzyme A ligase, partial [Thuja occidentalis]
Length = 491
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 18/134 (13%)
Query: 34 PRLEFG--CFVTSAISVCTVFVLLPKNG-PHKASSVGKPVRR-EMAIPDENGVDQ-KANV 88
PR FG +T A V ++ + K+ P + S G VR +M I D + D N
Sbjct: 281 PRATFGQGYGMTEAGPVLSMSLAFAKDPFPTSSGSCGTVVRNAQMKIVDPDTSDSLPYNK 340
Query: 89 NGKMCIREGPMVQR--INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAV 145
G++CIR GP + + +N+PEA +T + GW +GD+GY D + + VD V
Sbjct: 341 PGEICIR-GPQIMKGYLNDPEATERTIDKDGWLHTGDIGYIDDGDEVFI-------VDRV 392
Query: 146 KEFCKRNVASFKVP 159
KE K F+VP
Sbjct: 393 KELIKYK--GFQVP 404
>gi|444430294|ref|ZP_21225472.1| putative fatty-acid--CoA ligase [Gordonia soli NBRC 108243]
gi|443888838|dbj|GAC67193.1| putative fatty-acid--CoA ligase [Gordonia soli NBRC 108243]
Length = 545
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKT 111
L P + ++ S G+P + + I DE G++ R V +N PE
Sbjct: 347 LGPDDQETRSGSAGRPALNVQTQIVDEADRPVGNGTVGEIVHRSPQATVGYLNQPEKTAE 406
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
+F+ GWF SGDLGYFD + L W VD K+ K NV+S +V + +F
Sbjct: 407 SFRSGWFHSGDLGYFDEEGYL--WV-----VDRQKDMIKTGGENVSSREVEEVLF 454
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 143 DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ V FC+ +A +KVPK V +AD+L P +GKI +R +
Sbjct: 495 ETVLRFCRERLAGYKVPKYVIVADALPKNP-SGKILKRTL 533
>gi|241895786|ref|ZP_04783082.1| possible o-succinylbenzoate--CoA ligase [Weissella
paramesenteroides ATCC 33313]
gi|241870829|gb|EER74580.1| possible o-succinylbenzoate--CoA ligase [Weissella
paramesenteroides ATCC 33313]
Length = 503
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 31 YLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNG 90
Y P +E G +T A S+ L P + P KA +VG P+ ++A+ + + +KA +G
Sbjct: 296 YHLPIIE-GYGMTEAASLIA---LNPFDAP-KAGTVGLPIATDVALLIDGKISKKAGQSG 350
Query: 91 KMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKIS 138
++ +R ++ + ++ +F GW L+GDLG FD+ L + K++
Sbjct: 351 EILLRGDHVI--TDYLDSRPDSFYNGWLLTGDLGQFDTDGYLKIVGRIKEIISHGGEKVA 408
Query: 139 PTEVDAV 145
P ++AV
Sbjct: 409 PLAIEAV 415
>gi|335040750|ref|ZP_08533872.1| AMP-dependent synthetase and ligase [Caldalkalibacillus thermarum
TA2.A1]
gi|334179325|gb|EGL81968.1| AMP-dependent synthetase and ligase [Caldalkalibacillus thermarum
TA2.A1]
Length = 511
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 54 LLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKT 111
L P +G K S+G + + + + DE G + G++ ++ E MV +NNPEA
Sbjct: 318 LNPLDGKRKVGSIGLALPGQTVKVVDEQGQEVPRGERGELIVKGENIMVGYLNNPEATCE 377
Query: 112 AFQFGWFLSGDLGYFDSQ 129
+ GW +GD+GY D +
Sbjct: 378 TIKDGWLYTGDIGYQDEE 395
>gi|227503119|ref|ZP_03933168.1| possible long-chain-fatty-acid--CoA ligase [Corynebacterium
accolens ATCC 49725]
gi|227076180|gb|EEI14143.1| possible long-chain-fatty-acid--CoA ligase [Corynebacterium
accolens ATCC 49725]
Length = 610
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 77 PDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNM 134
P GV + N +G++CI+ G + + N+PEA + AF+ GW+ +GDLG D L +
Sbjct: 410 PPLGGVTLRINDDGEVCIKGGMVFEGYWNDPEATEEAFEDGWYNTGDLGEIDDDGKLTI 468
>gi|126361413|gb|ABO10009.1| GUS-Luciferase fusion protein [Binary gene-trap vector piGL]
Length = 1163
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 954 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 1012
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQR 130
+NNPEA N + GW SGD+ Y+D
Sbjct: 1013 GYVNNPEATNALIDKDGWLHSGDIAYWDEDE 1043
>gi|257060018|ref|YP_003137906.1| AMP-dependent synthetase and ligase [Cyanothece sp. PCC 8802]
gi|256590184|gb|ACV01071.1| AMP-dependent synthetase and ligase [Cyanothece sp. PCC 8802]
Length = 493
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAF 113
P NG A VG+P+ R E+ + DE G + G++ ++ G ++ PEA AF
Sbjct: 309 PLNGQRMAGYVGQPLPRVEVRLVDEQGQLVPSGTPGEIQVKSPGVFLEYWQKPEATAKAF 368
Query: 114 QFGWFLSGDLGYFD 127
Q GWF +GDL +
Sbjct: 369 QDGWFCTGDLAVVE 382
>gi|418003235|ref|ZP_12643326.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei UCD174]
gi|410542612|gb|EKQ17047.1| long-chain-fatty-acid--CoA ligase [Lactobacillus casei UCD174]
Length = 510
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQVLEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|195130076|ref|XP_002009480.1| GI15371 [Drosophila mojavensis]
gi|193907930|gb|EDW06797.1| GI15371 [Drosophila mojavensis]
Length = 576
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQK---ANVNGKMCIREGPMVQR--INN 105
V ++ P+ AS+ P E I + D K A + G++C+R GP V +NN
Sbjct: 381 VILMTPEGNTRYASTGVLPGSTEAKIVPLDATDLKGVGARMTGELCVR-GPQVMSGYLNN 439
Query: 106 PEANKTAFQFG-WFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
PEAN+ F G W +GD+ +FD + D +KE K V F+VP
Sbjct: 440 PEANELTFFPGKWLRTGDVAFFDEDGYFYI-------TDRMKELIK--VKGFQVP 485
>gi|196036763|ref|ZP_03104154.1| putative feruloyl-CoA synthetase [Bacillus cereus W]
gi|228945573|ref|ZP_04107923.1| Feruloyl-CoA synthetase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|195990646|gb|EDX54623.1| putative feruloyl-CoA synthetase [Bacillus cereus W]
gi|228814091|gb|EEM60362.1| Feruloyl-CoA synthetase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|407694322|ref|YP_006819110.1| AMP-dependent synthetase and ligase [Alcanivorax dieselolei B5]
gi|407251660|gb|AFT68767.1| AMP-dependent synthetase and ligase [Alcanivorax dieselolei B5]
Length = 521
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 58/188 (30%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEAN 109
+L + K SVGKP V +M I DEN D G++ +R GP + P+A
Sbjct: 331 ILSSGDAVRKNGSVGKPLVYVQMRIVDENDQDVPPGEVGELILR-GPTMFLSYWGRPDAT 389
Query: 110 KTAFQFGWFLSGDLG-------YFDSQRCLNMW-----KISPTEVDAV------------ 145
+ A + GWF SGDL Y+ R +M + PTEV+ V
Sbjct: 390 EEACRNGWFHSGDLARRDQEGFYYIVDRKKDMLISGGENVYPTEVEQVLYKHEQILEVAV 449
Query: 146 -----------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGK 176
++FC + FK+PK + + D L + TGK
Sbjct: 450 IGVPDDKWGEVPMAIVVPRDGQTPTLESLRDFCDGKLGRFKIPKHLALVDELP-RNATGK 508
Query: 177 IQRRIVAE 184
I +R + +
Sbjct: 509 ILKRTLRD 516
>gi|86137759|ref|ZP_01056335.1| coenzyme a synthetase-like protein [Roseobacter sp. MED193]
gi|85825351|gb|EAQ45550.1| coenzyme a synthetase-like protein [Roseobacter sp. MED193]
Length = 623
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFLS 120
K +VG+ ++I D+ G A+ G + I+ G + + NPEAN AF+ G F +
Sbjct: 337 KPGTVGQARGTSISILDDAGRPIGADAVGNVVIQGGAVTPGYLQNPEANSEAFRQGGFWT 396
Query: 121 GDLGYFDSQRCLNM------------WKISPTEVD 143
GDLG D++ L + KISP E+D
Sbjct: 397 GDLGMVDAEGYLTLTGRRKEIVNRGGQKISPREID 431
>gi|332663907|ref|YP_004446695.1| o-succinylbenzoate--CoA ligase [Haliscomenobacter hydrossis DSM
1100]
gi|332332721|gb|AEE49822.1| o-succinylbenzoate--CoA ligase [Haliscomenobacter hydrossis DSM
1100]
Length = 495
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 39 GCFVTSAISVCTV----FVLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMC 93
G F+ + V F L ++ K S+G+P E+ I DENG + N G++
Sbjct: 293 GVFIRQGFGMTEVGPNLFSLHHRDAMRKKGSIGRPNFYVEIKIVDENGQEVAPNTPGELL 352
Query: 94 IREGPMVQ--RINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
+R GPM NP A ++ + GWF SGD+ D + L
Sbjct: 353 LR-GPMTTPGYWGNPIATASSIREGWFYSGDMLRQDEEGYL 392
>gi|228927023|ref|ZP_04090089.1| Feruloyl-CoA synthetase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228832758|gb|EEM78329.1| Feruloyl-CoA synthetase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|229059626|ref|ZP_04197004.1| Feruloyl-CoA synthetase [Bacillus cereus AH603]
gi|228719639|gb|EEL71238.1| Feruloyl-CoA synthetase [Bacillus cereus AH603]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 7 SIHGA----AQLTITPYTNVFLFYKG---------RVYLPPRLEFGCFVTSAISVCTVFV 53
+IH A A+ T +V FY G R ++ FG + TVF+
Sbjct: 247 TIHQALINCAKFETTNLQSVRWFYNGGAPCSEELMREFIDRGFLFGQGFGMTETSPTVFM 306
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L ++ K S+GKPV + + DEN + G++ IR GP V + N P+A +
Sbjct: 307 LSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGKVGELLIR-GPNVMKGYWNRPDATE 365
Query: 111 TAFQFGWFLSGDLGYFDS 128
Q GW +GDL D
Sbjct: 366 ETIQDGWLYTGDLARVDE 383
>gi|116495895|ref|YP_807629.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
casei ATCC 334]
gi|116106045|gb|ABJ71187.1| Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lactobacillus
casei ATCC 334]
Length = 510
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQVLEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|409998239|ref|YP_006752640.1| peroxisomal-coenzyme A synthetase [Lactobacillus casei W56]
gi|406359251|emb|CCK23521.1| Putative peroxisomal-coenzyme A synthetase [Lactobacillus casei
W56]
Length = 511
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 295 QTYFHTQVLEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 350
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 351 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 393
>gi|423509848|ref|ZP_17486379.1| O-succinylbenzoate-CoA ligase [Bacillus cereus HuA2-1]
gi|402456080|gb|EJV87858.1| O-succinylbenzoate-CoA ligase [Bacillus cereus HuA2-1]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 7 SIHGA----AQLTITPYTNVFLFYKG---------RVYLPPRLEFGCFVTSAISVCTVFV 53
+IH A A+ T +V FY G R ++ FG + TVF+
Sbjct: 247 TIHQALINCAKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFM 306
Query: 54 LLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK 110
L ++ K S+GKPV + + DEN + G++ IR GP V + N P+A +
Sbjct: 307 LSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKGYWNRPDATE 365
Query: 111 TAFQFGWFLSGDLGYFDS 128
Q GW +GDL D
Sbjct: 366 ETIQDGWLYTGDLARVDE 383
>gi|365880573|ref|ZP_09419934.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. ORS
375]
gi|365291322|emb|CCD92465.1| putative O-succinylbenzoate--CoA ligase [Bradyrhizobium sp. ORS
375]
Length = 516
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 70/185 (37%), Gaps = 58/185 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPE 107
V L ++ KA S GKPV E+ I +G D G++ +R GP V N P+
Sbjct: 314 VLALDREDAARKAGSAGKPVLHTEVRIVRPDGSDADVGELGELWVR-GPNVTPGYWNRPD 372
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ---RCLNMWK---------ISPTEVDAVKE-------- 147
AN+++F GW +GD D ++ WK + P EV++V
Sbjct: 373 ANRSSFTDGWLHTGDATRVDEDGFYYIVDRWKDMYISGGENVYPAEVESVLHQLSAVAEA 432
Query: 148 ---------------------------------FCKRNVASFKVPKKVFIADSLSGKPLT 174
C+ N+A FK P+ V D+L + T
Sbjct: 433 AVIGIADPQWGETGMAIVAVKPGQSLSEAEIVAHCQANLARFKCPRTVRFVDALP-RNAT 491
Query: 175 GKIQR 179
GKI +
Sbjct: 492 GKIHK 496
>gi|291442742|ref|ZP_06582132.1| acyl-CoA synthetase [Streptomyces ghanaensis ATCC 14672]
gi|291345637|gb|EFE72593.1| acyl-CoA synthetase [Streptomyces ghanaensis ATCC 14672]
Length = 538
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 76/210 (36%), Gaps = 63/210 (30%)
Query: 38 FGCFVT---SAISVCTVFVLLP----KNGPHKASSVGKPV-RREMAIPDENGVDQKANVN 89
FGC + ++ +V V LP K G + GKP E+ + D +G +
Sbjct: 321 FGCQLAQIYASTEAGSVAVCLPPSAHKPGGPLLKAAGKPCPGNEIKVVDRDGNELPPGEI 380
Query: 90 GKMCIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WK 136
G++CIR MV N PEA A GW GD GY D L +
Sbjct: 381 GQVCIRTPAHMVGYWNRPEATAEALVDGWLRMGDAGYLDEDGHLFLCDRINDTIIVAGQN 440
Query: 137 ISPTEV------------------------DAVKE-----------------FCKRNVAS 155
I P EV +AV F + +A
Sbjct: 441 IYPAEVEKQLSEHPAVADAAVVGVPDDHWGEAVHAAVVLRPGAEVRPRQLLLFLRGRLAD 500
Query: 156 FKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
+K+P + + DSL P +GKI RR V EL
Sbjct: 501 YKIPIRYHVLDSLPRNP-SGKILRRSVREL 529
>gi|229011260|ref|ZP_04168453.1| Feruloyl-CoA synthetase [Bacillus mycoides DSM 2048]
gi|228750143|gb|EEL99975.1| Feruloyl-CoA synthetase [Bacillus mycoides DSM 2048]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 7 SIHGA----AQLTITPYTNVFLFYKGRVYLPPRLE-------------FGCFVTSAISVC 49
+IH A A+ T +V FY G P L FG TS
Sbjct: 247 TIHQALINCAKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSP---- 302
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP V + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKGYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLYTGDLAKVDE 383
>gi|225863891|ref|YP_002749269.1| putative feruloyl-CoA synthetase [Bacillus cereus 03BB102]
gi|229184166|ref|ZP_04311375.1| Feruloyl-CoA synthetase [Bacillus cereus BGSC 6E1]
gi|376265823|ref|YP_005118535.1| long-chain-fatty-acid--CoA ligase [Bacillus cereus F837/76]
gi|225789846|gb|ACO30063.1| putative feruloyl-CoA synthetase [Bacillus cereus 03BB102]
gi|228599281|gb|EEK56892.1| Feruloyl-CoA synthetase [Bacillus cereus BGSC 6E1]
gi|364511623|gb|AEW55022.1| Long-chain-fatty-acid--CoA ligase [Bacillus cereus F837/76]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|115399384|ref|XP_001215281.1| hypothetical protein ATEG_06103 [Aspergillus terreus NIH2624]
gi|114192164|gb|EAU33864.1| hypothetical protein ATEG_06103 [Aspergillus terreus NIH2624]
Length = 445
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKA-NVNGKMCIREGPMVQ--R 102
C + + P SVG+ + E + D+ G + A + G++C+R GP V
Sbjct: 233 ETCCIATMFPYPEQDDTGSVGRLIPNLEAKLVDDAGNNISAFGIRGELCVR-GPTVTPGY 291
Query: 103 INNPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKV 158
NNP+AN +F + GWF +GD+ Y D W I VD KE K V F+V
Sbjct: 292 FNNPQANAESFDRDGWFHTGDIAYCDE--ATKKWYI----VDRKKELIK--VRGFQV 340
>gi|375093963|ref|ZP_09740228.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora marina XMU15]
gi|374654696|gb|EHR49529.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora marina XMU15]
Length = 505
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I+ VL P+ + S G+PV E+ + D +G D G++ R
Sbjct: 303 YNCFGQSEIAPLAT-VLRPEEHQQRPDSAGRPVLFVELRVVDPDGNDVAPGEQGEVVYRS 361
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVAS 155
+ + + P+ + AF+ GWF SGDL D + L + VD +K+ N
Sbjct: 362 PQLCEGYWDKPQETEEAFRDGWFHSGDLVRIDEEGYLYV-------VDRIKDVI--NTGG 412
Query: 156 FKVPKKVFIADSLSGKPLTGKI 177
V + + D+L P G++
Sbjct: 413 VLVASRE-VEDALYTHPAVGEV 433
>gi|229121509|ref|ZP_04250736.1| Feruloyl-CoA synthetase [Bacillus cereus 95/8201]
gi|228661973|gb|EEL17586.1| Feruloyl-CoA synthetase [Bacillus cereus 95/8201]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|229166832|ref|ZP_04294580.1| Feruloyl-CoA synthetase [Bacillus cereus AH621]
gi|423420072|ref|ZP_17397161.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BAG3X2-1]
gi|423487081|ref|ZP_17463763.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BtB2-4]
gi|423492805|ref|ZP_17469449.1| O-succinylbenzoate-CoA ligase [Bacillus cereus CER057]
gi|423500403|ref|ZP_17477020.1| O-succinylbenzoate-CoA ligase [Bacillus cereus CER074]
gi|423594089|ref|ZP_17570120.1| O-succinylbenzoate-CoA ligase [Bacillus cereus VD048]
gi|228616635|gb|EEK73712.1| Feruloyl-CoA synthetase [Bacillus cereus AH621]
gi|401101981|gb|EJQ09968.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BAG3X2-1]
gi|401155407|gb|EJQ62818.1| O-succinylbenzoate-CoA ligase [Bacillus cereus CER074]
gi|401156289|gb|EJQ63696.1| O-succinylbenzoate-CoA ligase [Bacillus cereus CER057]
gi|401224890|gb|EJR31442.1| O-succinylbenzoate-CoA ligase [Bacillus cereus VD048]
gi|402438958|gb|EJV70967.1| O-succinylbenzoate-CoA ligase [Bacillus cereus BtB2-4]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 7 SIHGA----AQLTITPYTNVFLFYKGRVYLPPRLE-------------FGCFVTSAISVC 49
+IH A A+ T +V FY G P L FG TS
Sbjct: 247 TIHQALINCAKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSP---- 302
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP V + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKGYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLYTGDLAKVDE 383
>gi|191639378|ref|YP_001988544.1| AMP-dependent synthetase and ligase [Lactobacillus casei BL23]
gi|385821141|ref|YP_005857528.1| hypothetical protein LC2W_2613 [Lactobacillus casei LC2W]
gi|385824332|ref|YP_005860674.1| hypothetical protein LCBD_2638 [Lactobacillus casei BD-II]
gi|190713680|emb|CAQ67686.1| AMP-dependent synthetase and ligase [Lactobacillus casei BL23]
gi|327383468|gb|AEA54944.1| hypothetical protein LC2W_2613 [Lactobacillus casei LC2W]
gi|327386659|gb|AEA58133.1| hypothetical protein LCBD_2638 [Lactobacillus casei BD-II]
Length = 510
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENG-VDQKAN 87
+ Y ++ G +T S T L P N P K S GKPV E+ + +G + Q+
Sbjct: 294 QTYFHTQVLEGYGMTETASQST---LNPINAP-KIGSAGKPVGTELRLMLADGSLSQQPY 349
Query: 88 VNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
V G++ +R ++ P + +F+ WFL+GDLGY D L
Sbjct: 350 VEGEIALRGDHVIHDYLEP--HPESFKDDWFLTGDLGYLDEDGYL 392
>gi|254721282|ref|ZP_05183072.1| acyl-CoA synthetase [Bacillus anthracis str. A1055]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|167590686|ref|ZP_02383074.1| AMP-dependent synthetase and ligase [Burkholderia ubonensis Bu]
Length = 545
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 62/202 (30%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKAS---SVGKPV-RREMAIPDENGVDQKANVNGKMCI 94
GCF+ + ++ N P + + G P+ ++ + D+N + G++C+
Sbjct: 340 GCFIREGYGLSETSPVVTFNPPSIDAFTGTTGLPLPSTDVKLLDDNDREAGIGAPGEVCV 399
Query: 95 REGPMVQR--INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISP 139
+ GP V R PEAN AF G+F +GD+G FD Q L + + + P
Sbjct: 400 K-GPQVMRGYWQQPEANARAFTADGYFRTGDIGVFDDQGFLKIVDRKKDMVIVSGFNVYP 458
Query: 140 TEVDAVK-----------------------------------------EFCKRNVASFKV 158
EV+AV C+ N+A++KV
Sbjct: 459 NEVEAVATAFPGVAECACIGVPDPRTGEAVRLFVVAAEDAAVTEADLIAHCRANLAAYKV 518
Query: 159 PKKVFIADSLSGKPLTGKIQRR 180
PK + + L K GKI RR
Sbjct: 519 PKVIRFVERLP-KSTVGKILRR 539
>gi|220925904|ref|YP_002501206.1| acyl-CoA synthetase [Methylobacterium nodulans ORS 2060]
gi|219950511|gb|ACL60903.1| AMP-dependent synthetase and ligase [Methylobacterium nodulans ORS
2060]
Length = 536
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 57/167 (34%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
E+ I D G + G++C+ GP V NN +A+ AF+ GWF +GDLG+ D++R
Sbjct: 354 EVQIQDAEGREVPPGETGEICVC-GPAVFAGYWNNSKADAEAFRDGWFRTGDLGFLDAER 412
Query: 131 CL-------NMW-----KISPTEVD-------AVKE------------------------ 147
L +M+ I P E++ AV E
Sbjct: 413 FLTITGRASDMYISGGSNIYPREIEEKILAHPAVAETAVLGVPDPTWGEIGIAVCVPREG 472
Query: 148 ----------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
F +A +K+PK+VF+ +L K GKI +++V E
Sbjct: 473 AALTEAELLAFLDGRIARYKLPKRVFLRPALP-KSGYGKITKKLVRE 518
>gi|409406420|ref|ZP_11254882.1| long-chain acyl-CoA synthetase [Herbaspirillum sp. GW103]
gi|386434969|gb|EIJ47794.1| long-chain acyl-CoA synthetase [Herbaspirillum sp. GW103]
Length = 653
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEAN 109
V V + +G K SVG+P++ GV+ + + NG++ +R G M + P+A
Sbjct: 392 VTVCMQPSGDVKLDSVGRPMK---------GVEVRIDANGEVLVRSPGLMKEYFKRPDAT 442
Query: 110 KTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKV 162
A Q G+F +GD G+FDS L + +D K+ K S PK +
Sbjct: 443 AEAIDQDGYFHTGDAGFFDSDGHLKI-------IDRAKDVGKMASGSMFAPKYI 489
>gi|170696106|ref|ZP_02887242.1| AMP-dependent synthetase and ligase [Burkholderia graminis C4D1M]
gi|170139009|gb|EDT07201.1| AMP-dependent synthetase and ligase [Burkholderia graminis C4D1M]
Length = 543
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 59/174 (33%)
Query: 64 SSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQF-GWFL 119
S+ G P+ ++ + DE+ V+ G++CI+ GP V NPEAN +F G+F
Sbjct: 366 STAGLPLPSTDIKLLDEDDVEVNIGEAGEICIK-GPQVMGGYWENPEANAKSFTSDGYFR 424
Query: 120 SGDLGYFDSQRCLNM------------WKISPTEVDAVK--------------------- 146
+GD+G FD + L + +K+ P EV+AV
Sbjct: 425 TGDVGVFDRKGFLKIVDRKKDMVVVSGFKVYPNEVEAVATTFPGVAECACVGIPDEKTGE 484
Query: 147 --------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
C+ +A +KVPK + D+L K GKI RR
Sbjct: 485 AVKLFVVKAPAVEIDEAALIAHCRAGMAGYKVPKFIGFVDALP-KSSVGKIMRR 537
>gi|218903081|ref|YP_002450915.1| acyl-CoA synthetase [Bacillus cereus AH820]
gi|218536223|gb|ACK88621.1| putative feruloyl-CoA synthetase [Bacillus cereus AH820]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|431927595|ref|YP_007240629.1| LOW QUALITY PROTEIN: acyl-CoA synthetase [Pseudomonas stutzeri
RCH2]
gi|431825882|gb|AGA86999.1| LOW QUALITY PROTEIN: acyl-CoA synthetase (AMP-forming)/AMP-acid
ligase II [Pseudomonas stutzeri RCH2]
Length = 542
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMA--IPDENGVDQKANVN 89
LP + C+ S I+ VL P+ + +S G+PV + I G + V
Sbjct: 311 LPQSGLYNCYGQSEIAPLAT-VLTPEEHRERPTSCGRPVSNVLTRIIDPSTGEECAPGVA 369
Query: 90 GKMCIREGP-MVQRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
G++ R MV P AF GWF SGDLGY D+Q
Sbjct: 370 GELVHRSPQLMVGYWEKPAETAEAFADGWFHSGDLGYRDAQ 410
>gi|229017267|ref|ZP_04174172.1| Feruloyl-CoA synthetase [Bacillus cereus AH1273]
gi|229023440|ref|ZP_04179940.1| Feruloyl-CoA synthetase [Bacillus cereus AH1272]
gi|228737850|gb|EEL88346.1| Feruloyl-CoA synthetase [Bacillus cereus AH1272]
gi|228744020|gb|EEL94117.1| Feruloyl-CoA synthetase [Bacillus cereus AH1273]
Length = 496
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 7 SIHGA----AQLTITPYTNVFLFYKGRVYLPPRLE-------------FGCFVTSAISVC 49
+IH A A+ T +V FY G P L FG TS
Sbjct: 247 TIHQALINCAKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSP---- 302
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP V + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYVLIDENKNKVEIGEVGELLIR-GPNVMKGYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLYTGDLAKVDE 383
>gi|387316237|gb|AFJ73473.1| 4-coumarate: coenzyme A ligase, partial [Thuja occidentalis]
Length = 390
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 60 PHKASSVGKPVRREMA--IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK-TAFQ 114
P K+ S G VR I E GV N G++CIR GP + + +N+PEA T +
Sbjct: 313 PVKSGSCGTVVRNAQIKIIDTETGVSLSRNKPGEICIR-GPEIMKGYLNDPEATALTIDK 371
Query: 115 FGWFLSGDLGYFDSQR 130
GW +GD+GY D
Sbjct: 372 AGWLHTGDVGYIDEDE 387
>gi|310639551|ref|YP_003944309.1| acyl-CoA ligase [Paenibacillus polymyxa SC2]
gi|386038763|ref|YP_005957717.1| feruloyl-CoA synthetase, putative [Paenibacillus polymyxa M1]
gi|309244501|gb|ADO54068.1| Acyl-CoA ligase [Paenibacillus polymyxa SC2]
gi|343094801|emb|CCC83010.1| feruloyl-CoA synthetase, putative [Paenibacillus polymyxa M1]
Length = 486
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 67 GKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAFQFGWFLSGDLG 124
GKP+ ++ I D G Q + G++ IR G M +N P+ ++ Q GWF +GDLG
Sbjct: 309 GKPLPGVDLKILDSTGNQQADGIVGEVWIRSAGCMEGYLNRPDLTQSVLQDGWFKTGDLG 368
Query: 125 YFDS 128
Y D
Sbjct: 369 YLDD 372
>gi|229029657|ref|ZP_04185733.1| Feruloyl-CoA synthetase [Bacillus cereus AH1271]
gi|228731661|gb|EEL82567.1| Feruloyl-CoA synthetase [Bacillus cereus AH1271]
Length = 496
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKIGSIGKPVLFCDYVLIDENKNKVGIGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A K Q GW +GDL D
Sbjct: 362 DATKETIQDGWLYTGDLAKVDE 383
>gi|260830431|ref|XP_002610164.1| hypothetical protein BRAFLDRAFT_216949 [Branchiostoma floridae]
gi|229295528|gb|EEN66174.1| hypothetical protein BRAFLDRAFT_216949 [Branchiostoma floridae]
Length = 499
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 34 PRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPD-ENGVDQKANVNGK 91
P + G +T A V + + G SVG+P+ E I D ++G +G+
Sbjct: 287 PTIRQGFGMTEASPVTHIVM----EGEDLPGSVGQPMPNTECKIVDIQSGKLLGEGEDGE 342
Query: 92 MCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFC 149
+C+R GP V + +NNPEA + GW +GD+G++D + VD +KE
Sbjct: 343 LCVR-GPQVMKGYLNNPEATANTIKDGWLHTGDIGHYDGTGNFYI-------VDRLKELI 394
Query: 150 KRNVASFKVP 159
K ++VP
Sbjct: 395 KYK--GYQVP 402
>gi|30261960|ref|NP_844337.1| acyl-CoA synthetase [Bacillus anthracis str. Ames]
gi|47527224|ref|YP_018573.1| acyl-CoA synthetase [Bacillus anthracis str. 'Ames Ancestor']
gi|49184801|ref|YP_028053.1| acyl-CoA synthetase [Bacillus anthracis str. Sterne]
gi|65319244|ref|ZP_00392203.1| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[Bacillus anthracis str. A2012]
gi|165870247|ref|ZP_02214903.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0488]
gi|167633121|ref|ZP_02391447.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0442]
gi|167638350|ref|ZP_02396627.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0193]
gi|170686403|ref|ZP_02877624.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0465]
gi|170706090|ref|ZP_02896552.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0389]
gi|177650895|ref|ZP_02933792.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0174]
gi|190566506|ref|ZP_03019424.1| putative feruloyl-CoA synthetase [Bacillus anthracis str.
Tsiankovskii-I]
gi|227815251|ref|YP_002815260.1| acyl-CoA synthetase [Bacillus anthracis str. CDC 684]
gi|229600600|ref|YP_002866332.1| acyl-CoA synthetase [Bacillus anthracis str. A0248]
gi|254684524|ref|ZP_05148384.1| acyl-CoA synthetase [Bacillus anthracis str. CNEVA-9066]
gi|254734827|ref|ZP_05192539.1| acyl-CoA synthetase [Bacillus anthracis str. Western North America
USA6153]
gi|254741228|ref|ZP_05198916.1| acyl-CoA synthetase [Bacillus anthracis str. Kruger B]
gi|254755482|ref|ZP_05207516.1| acyl-CoA synthetase [Bacillus anthracis str. Vollum]
gi|254760018|ref|ZP_05212042.1| acyl-CoA synthetase [Bacillus anthracis str. Australia 94]
gi|386735699|ref|YP_006208880.1| feruloyl-CoA synthetase [Bacillus anthracis str. H9401]
gi|421510042|ref|ZP_15956941.1| acyl-CoA synthetase [Bacillus anthracis str. UR-1]
gi|421635754|ref|ZP_16076353.1| acyl-CoA synthetase [Bacillus anthracis str. BF1]
gi|30256586|gb|AAP25823.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. Ames]
gi|47502372|gb|AAT31048.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178728|gb|AAT54104.1| feruloyl-CoA synthetase, putative [Bacillus anthracis str. Sterne]
gi|164714135|gb|EDR19656.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0488]
gi|167513651|gb|EDR89020.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0193]
gi|167531933|gb|EDR94598.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0442]
gi|170129092|gb|EDS97957.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0389]
gi|170669479|gb|EDT20221.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0465]
gi|172083356|gb|EDT68417.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0174]
gi|190562641|gb|EDV16608.1| putative feruloyl-CoA synthetase [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004733|gb|ACP14476.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. CDC 684]
gi|229265008|gb|ACQ46645.1| putative feruloyl-CoA synthetase [Bacillus anthracis str. A0248]
gi|384385551|gb|AFH83212.1| Feruloyl-CoA synthetase [Bacillus anthracis str. H9401]
gi|401819884|gb|EJT19055.1| acyl-CoA synthetase [Bacillus anthracis str. UR-1]
gi|403396282|gb|EJY93519.1| acyl-CoA synthetase [Bacillus anthracis str. BF1]
Length = 496
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|118477388|ref|YP_894539.1| acyl-CoA synthetase [Bacillus thuringiensis str. Al Hakam]
gi|118416613|gb|ABK85032.1| acyl-CoA synthase [Bacillus thuringiensis str. Al Hakam]
Length = 496
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|452749357|ref|ZP_21949122.1| acyl-CoA synthetase [Pseudomonas stutzeri NF13]
gi|452006774|gb|EMD99041.1| acyl-CoA synthetase [Pseudomonas stutzeri NF13]
Length = 526
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDE-NGVDQKANVNGKMCIR 95
+ C+ S I+ VL P+ + +S G+PV E I D G D V G++ R
Sbjct: 320 YNCYGQSEIAPLAA-VLSPEEHKERPASCGRPVINVETRIIDPLTGEDCSPGVPGELVHR 378
Query: 96 EGP-MVQRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
M + P+ AF GWF SGDLGY D Q
Sbjct: 379 SPQLMTGYWDKPDETAEAFAGGWFHSGDLGYHDEQ 413
>gi|254486439|ref|ZP_05099644.1| long-chain-fatty-acid-CoA ligase, putative [Roseobacter sp. GAI101]
gi|214043308|gb|EEB83946.1| long-chain-fatty-acid-CoA ligase, putative [Roseobacter sp. GAI101]
Length = 531
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 59 GPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQF 115
G ++ S+G V E+ I D NG D + +G++ I+ GPMV NNPE K+ FQ
Sbjct: 350 GAERSDSIGIAVPCGEIRIVDPNGNDVEDGEHGELWIK-GPMVVPGYWNNPEKTKSEFQD 408
Query: 116 GWFLSGDLGYFDSQ 129
G++ SGD+G D+Q
Sbjct: 409 GFWKSGDVGSRDAQ 422
>gi|1669525|dbj|BAA05005.1| luciferase [Photuris pennsylvanica]
Length = 552
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDEN-GVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K +VGK V + + D N G N G++C GPM+ +
Sbjct: 340 GLTETTCAIVITAEGEFKPGAVGKVVPFYSLKVLDLNTGKKLGPNERGEICFT-GPMIMK 398
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
INNPEA + + GW SGD+GYFD + + +++ P E++A+
Sbjct: 399 GYINNPEATREIIDEEGWIHSGDIGYFDEDGHVYIVDRLKSLIKYKGYQVPPAELEAL 456
>gi|397781356|ref|YP_006545829.1| acetyl-CoA synthetase [Methanoculleus bourgensis MS2]
gi|396939858|emb|CCJ37113.1| acetyl-CoA synthetase [Methanoculleus bourgensis MS2]
Length = 627
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 61 HKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP-----MVQRINNPEANKTAFQ 114
HK S+GKPV + + D++G + G++ +R P V+ ++NPEAN+ +FQ
Sbjct: 433 HKPGSMGKPVPGWHIELHDDDGNPVEVGEEGRIAVRLNPRPVGLFVEYLDNPEANQASFQ 492
Query: 115 FGWFLSGDLGYFDSQ 129
G++ +GD D
Sbjct: 493 NGFYYTGDKASMDED 507
>gi|268318449|gb|ACZ01944.1| acyl-CoA ligase [Paenibacillus polymyxa SC2]
Length = 470
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 67 GKPV-RREMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAFQFGWFLSGDLG 124
GKP+ ++ I D G Q + G++ IR G M +N P+ ++ Q GWF +GDLG
Sbjct: 293 GKPLPGVDLKILDSTGNQQADGIVGEVWIRSAGCMEGYLNRPDLTQSVLQDGWFKTGDLG 352
Query: 125 YFDS 128
Y D
Sbjct: 353 YLDD 356
>gi|196047047|ref|ZP_03114266.1| putative feruloyl-CoA synthetase [Bacillus cereus 03BB108]
gi|196022151|gb|EDX60839.1| putative feruloyl-CoA synthetase [Bacillus cereus 03BB108]
Length = 496
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQRINNP 106
TVF+L ++ K S+GKPV + + DEN + G++ IR GP M + N P
Sbjct: 303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIR-GPNVMKEYWNRP 361
Query: 107 EANKTAFQFGWFLSGDLGYFDS 128
+A + Q GW +GDL D
Sbjct: 362 DATEETIQDGWLCTGDLARVDE 383
>gi|387316223|gb|AFJ73466.1| 4-coumarate: coenzyme A ligase, partial [Cryptomeria japonica]
Length = 390
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 60 PHKASSVGKPVRREMA--IPDENGVDQKANVNGKMCIREGPMVQR--INNPEAN-KTAFQ 114
P K+ S G VR I E GV N G++CIR GP + + +N+PEA +T +
Sbjct: 313 PVKSGSCGTVVRNAQIKIIDTETGVSLPHNKPGEICIR-GPEIMKGYLNDPEATAQTIDK 371
Query: 115 FGWFLSGDLGYFDSQR 130
GW +GD+GY D
Sbjct: 372 EGWLHTGDVGYIDDDE 387
>gi|33333047|gb|AAQ11688.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333051|gb|AAQ11690.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333053|gb|AAQ11691.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333055|gb|AAQ11692.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333057|gb|AAQ11693.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333059|gb|AAQ11694.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333061|gb|AAQ11695.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333063|gb|AAQ11696.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|397689621|ref|YP_006526875.1| long-chain-fatty-acid-CoA ligase [Melioribacter roseus P3M]
gi|395811113|gb|AFN73862.1| long-chain-fatty-acid-CoA ligase [Melioribacter roseus P3M]
Length = 636
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 61 HKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWF 118
HK S G+ V E+ I D NG + A G++ +R E MV N +A + GW
Sbjct: 397 HKLGSSGRIVDNLEVKICDSNGSELPAGQKGEIVVRGENVMVGYWKNEKATAETIKDGWL 456
Query: 119 LSGDLGYFDSQRCL 132
SGDLGY D L
Sbjct: 457 YSGDLGYLDEDGFL 470
>gi|389879984|ref|YP_006382214.1| putative long-chain-fatty-acid CoA ligase [Tistrella mobilis
KA081020-065]
gi|388531374|gb|AFK56569.1| putative long-chain-fatty-acid CoA ligase [Tistrella mobilis
KA081020-065]
Length = 512
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRC 131
++I D +G + G++C+ EGP V R N PEA + GW +GDLG+ D++
Sbjct: 331 VSIRDADGRELAPGETGEICV-EGPTVMRGYWNRPEATAETLKDGWLHTGDLGHLDAEGF 389
Query: 132 LNM 134
L++
Sbjct: 390 LHL 392
>gi|124266087|ref|YP_001020091.1| acyl-CoA synthetase [Methylibium petroleiphilum PM1]
gi|124258862|gb|ABM93856.1| putative long-chain-fatty-acid--CoA ligase [Methylibium
petroleiphilum PM1]
Length = 520
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANK 110
VL P++ KA S G+ + E + D+ D G++ R ++ + E +
Sbjct: 328 VLKPEDQLRKAGSAGRATLNVETRVVDDAMRDVAVGEIGEIVHRSPQLLSGYFRDEERTR 387
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIADS 167
AF+ GWF SGDLG D++ L T VD K+ K NVAS +V + ++ +
Sbjct: 388 AAFEGGWFHSGDLGVLDAEGYL-------TVVDRKKDMIKTGGENVASREVEETIYALEG 440
Query: 168 LSGKPLTG 175
+S + G
Sbjct: 441 VSEVAVIG 448
>gi|387316078|gb|AFJ73431.1| 4-coumarate: coenzyme A ligase, partial [Metasequoia
glyptostroboides]
Length = 491
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 34 PRLEFG--CFVTSA---ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKA 86
PR FG +T A +S+C F P P K+ S G VR +M I D + G
Sbjct: 281 PRATFGQGYGMTEAGPVLSMCLAFAKEPF--PTKSGSCGTVVRNAQMKIVDPDTGESLPY 338
Query: 87 NVNGKMCIREGPMVQ-RINNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDA 144
N G++CIR +++ +N+PE+ +T + GW +GD+GY D + + VD
Sbjct: 339 NKPGEICIRGSQIMKGYLNDPESTARTIDKDGWLHTGDIGYIDDGDEVFI-------VDR 391
Query: 145 VKEFCKRNVASFKVP 159
VKE K F+VP
Sbjct: 392 VKELIKYK--GFQVP 404
>gi|429197568|ref|ZP_19189456.1| long-chain-fatty-acid--CoA ligase [Streptomyces ipomoeae 91-03]
gi|428666740|gb|EKX65875.1| long-chain-fatty-acid--CoA ligase [Streptomyces ipomoeae 91-03]
Length = 498
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 14/148 (9%)
Query: 34 PRLEF-GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGK 91
P+L F CF S I ++ VL P + S G+PV E + DENG D G+
Sbjct: 291 PKLAFHNCFGQSEIGPLSM-VLGPYEHKGRMDSCGRPVMFVEARVVDENGEDVPDGTPGE 349
Query: 92 MCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+ + + + PE AF+ GWF SGDL D+ + VD VK+
Sbjct: 350 IVYQSPQLCEGYWEKPEETAEAFRDGWFHSGDLAVRDADGFFTI-------VDRVKDVIN 402
Query: 151 RN---VASFKVPKKVFIADSLSGKPLTG 175
+AS +V ++ D ++ + G
Sbjct: 403 SGGVLIASRQVEDALYTHDRVAEVAVIG 430
>gi|148642434|ref|YP_001272947.1| long-chain fatty-acid-CoA ligase (AMP-forming), CaiC
[Methanobrevibacter smithii ATCC 35061]
gi|261349392|ref|ZP_05974809.1| AMP-dependent synthetase and ligase [Methanobrevibacter smithii DSM
2374]
gi|148551451|gb|ABQ86579.1| long-chain fatty-acid-CoA ligase (AMP-forming), CaiC
[Methanobrevibacter smithii ATCC 35061]
gi|288861756|gb|EFC94054.1| AMP-dependent synthetase and ligase [Methanobrevibacter smithii DSM
2374]
Length = 492
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 42 VTSAISVCTVFVLLPKN--GPHKASSVGKPV-RREMAIPDENGVDQKAN--VNGKMCIRE 96
++ I + T V+ P++ + SVG PV E+ I DE+ ++ +G++ +R
Sbjct: 288 LSETIVIGTGTVIRPEDYRTADRFESVGHPVCFSEVKIVDEHDYTKELEKYEHGEIALR- 346
Query: 97 GPMVQR--INNPEANKTAF-QFGWFLSGDLGYFDSQR------------CLNMWKISPTE 141
GP V + A K +F GWFL+GD+GY D ++ WKI PTE
Sbjct: 347 GPAVAKGYWRREVATKESFLDDGWFLTGDIGYLDEDNRLFITDRKKDMIVMSGWKIYPTE 406
Query: 142 VDAV--KEFCKRNVASFKVP 159
V+ V K + +A F +P
Sbjct: 407 VEEVLIKYPEVKEIAIFSIP 426
>gi|392378952|ref|YP_004986111.1| amP-dependent synthetase and ligase [Azospirillum brasilense Sp245]
gi|356881319|emb|CCD02304.1| amP-dependent synthetase and ligase [Azospirillum brasilense Sp245]
Length = 541
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 72 REMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQ- 129
R+ I DE+G G++C+R G + N EA AF+ GWF +GDL DS
Sbjct: 355 RDAMIADEDGNPVPTGATGELCVRGRGLLKSYFGNEEATAQAFRKGWFRTGDLARVDSSG 414
Query: 130 ------RCLNMWKISPTEVDAVK-EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
R +M + S + A + E R + + V + D G+ + IQ
Sbjct: 415 YHYILGRTKDMVRRSGENISAREVEVVLRTLDGIQDAAIVPVPDDYRGEEIKAYIQ 470
>gi|384176668|ref|YP_005558053.1| 2-succinylbenzoate--CoA ligase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595892|gb|AEP92079.1| 2-succinylbenzoate--CoA ligase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 486
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 58/195 (29%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--I 103
C+ V L P+ K S GKP+ E+ I + V + +G++ ++ GP V +
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPFE-HGEIMVK-GPNVMKSYF 348
Query: 104 NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------ 145
N AN+ +FQ GW +GDLGY D++ L + I P EV++V
Sbjct: 349 NRESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPA 408
Query: 146 ---------------------------------KEFCKRNVASFKVPKKVFIADSLSGKP 172
+CK +A +K+P K F+ D L +
Sbjct: 409 VAEAGVSGAEDKKWGKVPHAYLVLHKPVSAEELTAYCKERLAKYKIPAKFFVLDRLP-RN 467
Query: 173 LTGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 468 ASNKLLRNQLKDARK 482
>gi|33333065|gb|AAQ11697.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|294516918|gb|ADE96996.1| p-coumarate:CoA-ligase 2 [Sorbus aucuparia]
Length = 547
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ- 101
A+S+C F P K+ + G VR EM I D + G N G++CIR +++
Sbjct: 346 ALSMCLAFAKEPFE--IKSGACGTVVRNAEMKIVDPDTGASLPRNQAGEICIRGSQIMKG 403
Query: 102 RINNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+N+PEA +T + GW +GD+GY D L + VD +KE K
Sbjct: 404 YLNDPEATERTVDKQGWLHTGDIGYIDGDDELFI-------VDRLKELIK 446
>gi|227505086|ref|ZP_03935135.1| acyl-CoA synthetase [Corynebacterium striatum ATCC 6940]
gi|227198289|gb|EEI78337.1| acyl-CoA synthetase [Corynebacterium striatum ATCC 6940]
Length = 604
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 65/203 (32%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKP---VRREMAIPDENGVDQKANVNGKMCI 94
+G S + C P +A +G P +A PD Q V G++ +
Sbjct: 364 YGLTEASPVVTCN-----PLTDARRAGHIGLPFPDTEVRIANPDNLDETQPDGVEGELLV 418
Query: 95 REGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPT 140
R GP V ++N EA F GWF +GD+ D + + + + + P
Sbjct: 419 R-GPQVFPGYLHNEEATAATFHNGWFRTGDMAVMDEEGFIRLVSRIKEMIITGGFNVYPA 477
Query: 141 EVDAV-----------------------------------------KEFCKRNVASFKVP 159
EV+A+ K+FC+ + +KVP
Sbjct: 478 EVEAIINQHPDVVNVAVVGRPRHDGSEDVVACVILREGAALDPEGLKDFCRERLTRYKVP 537
Query: 160 KKVFIADSLSGKPLTGKIQRRIV 182
+ + + L+ L GKI+RR V
Sbjct: 538 RTFYHFEHLASDQL-GKIRRREV 559
>gi|409358919|ref|ZP_11237277.1| AMP-dependent synthetase and ligase [Dietzia alimentaria 72]
Length = 529
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 76/206 (36%), Gaps = 65/206 (31%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
FG TS + C L P+ A S+G+PV + I DE G + + G++C+R
Sbjct: 322 FGMTETSPNAAC----LQPEEVVDHAGSIGRPVLLMDFRIVDEQGYEVPTDEVGELCVR- 376
Query: 97 GP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV 142
GP V P A + GWF +GDL D Q + + P EV
Sbjct: 377 GPNVFVGYWGKPAETDRALRGGWFHTGDLARRDEQGFYTLVDRKKDMVITGGENVYPIEV 436
Query: 143 -----------------------------------------DAVKEFCKRNVASFKVPKK 161
D ++++ + +A FK P +
Sbjct: 437 EQVMYQHPEVREVAVVGIPDDAWGERVMAVVVRTDGSTLQADELRQWTRERIAHFKAPSE 496
Query: 162 VFIADSLSGKPLTGKIQRRIVAELRK 187
V A+ L + TGK+ +R ELRK
Sbjct: 497 VRFAEELP-RTATGKLLKR---ELRK 518
>gi|397737075|ref|ZP_10503750.1| AMP-dependent synthetase and ligase [Rhodococcus sp. JVH1]
gi|396927151|gb|EJI94385.1| AMP-dependent synthetase and ligase [Rhodococcus sp. JVH1]
Length = 179
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K SVG+ + + D +G A G++ +R GP V R + +P +F GWF
Sbjct: 2 KLGSVGRATGVGLRVVDPDGRTCPAGTVGEVWVR-GPTVSRGYLADPVETAHSFVDGWFR 60
Query: 120 SGDLGYFDSQRCLNMW----------KISPTEVDAVKEFCK--RNVASFKVPKKVF 163
+GDLG D L + KISP V+A+ C A F +P ++
Sbjct: 61 TGDLGSLDEDGYLFLTGRIKNLVGGEKISPEHVEAILGGCSAVTEAAVFAIPDAIY 116
>gi|158521683|ref|YP_001529553.1| AMP-dependent synthetase and ligase [Desulfococcus oleovorans Hxd3]
gi|158510509|gb|ABW67476.1| AMP-dependent synthetase and ligase [Desulfococcus oleovorans Hxd3]
Length = 608
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 56/178 (31%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFLS 120
K SVGK + ++ + DE G + G++ R G +++ + E A Q GWF
Sbjct: 429 KERSVGKSIL-DVRVVDEKGDEVPRGEIGEIMYRSGWIMKGYYKDDEKTAEAMQDGWFKG 487
Query: 121 GDLGYFDS----------QRCLNMW--KISPTEV-------------------------- 142
GDLGY D + C+N K+ P EV
Sbjct: 488 GDLGYIDEDGEVRLVDRKKECINTGGEKVFPLEVEEVLHHHPAVDDVCIIGIPDEEWGHT 547
Query: 143 ---------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
D + FCK +A FK+P+ V + + L P+ GK+ R + EL
Sbjct: 548 VRAVIKPVAGATPAPDDILAFCKGKLAGFKIPRSVVLVEELPLSPV-GKMLRAKIREL 604
>gi|222446068|ref|ZP_03608583.1| hypothetical protein METSMIALI_01717 [Methanobrevibacter smithii
DSM 2375]
gi|222435633|gb|EEE42798.1| AMP-binding enzyme [Methanobrevibacter smithii DSM 2375]
Length = 492
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 42 VTSAISVCTVFVLLPKN--GPHKASSVGKPV-RREMAIPDENGVDQKAN--VNGKMCIRE 96
++ I + T V+ P++ + SVG PV E+ I DE+ ++ +G++ +R
Sbjct: 288 LSETIVIGTGTVIRPEDYRTADRFESVGHPVCFSEVKIVDEHDYTKELEKYEHGEIALR- 346
Query: 97 GPMVQR--INNPEANKTAF-QFGWFLSGDLGYFDSQR------------CLNMWKISPTE 141
GP V + A K +F GWFL+GD+GY D ++ WKI PTE
Sbjct: 347 GPAVAKGYWRREVATKESFLDDGWFLTGDIGYLDEDNRLFITDRKKDMIVMSGWKIYPTE 406
Query: 142 VDAV--KEFCKRNVASFKVP 159
V+ V K + +A F +P
Sbjct: 407 VEEVLIKYPEVKEIAIFSIP 426
>gi|94969885|ref|YP_591933.1| AMP-dependent synthetase/ligase [Candidatus Koribacter versatilis
Ellin345]
gi|94551935|gb|ABF41859.1| AMP-dependent synthetase and ligase [Candidatus Koribacter
versatilis Ellin345]
Length = 918
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 33/118 (27%)
Query: 65 SVGKP-VRREMAI----PDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
S+GKP V E+ I PDENG G++ IR G MV + N P+A + GW
Sbjct: 372 SIGKPFVGAEIEIHDPKPDENG-----RPVGELKIR-GGMVMKGYYNRPDATAAVLRDGW 425
Query: 118 FLSGDLGYFDSQRCLNMW-------------KISPTEVDA-------VKEFCKRNVAS 155
F SGDLGY D+Q L + I P E++A +KE C + S
Sbjct: 426 FYSGDLGYKDTQGNLYISGRAKEIIVLSSGKNIYPEEIEAHYLKSPFIKELCVMGLES 483
>gi|33333069|gb|AAQ11699.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|33333049|gb|AAQ11689.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|33333075|gb|AAQ11702.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333085|gb|AAQ11707.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|33333067|gb|AAQ11698.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333105|gb|AAQ11717.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|256824004|ref|YP_003147964.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Kytococcus
sedentarius DSM 20547]
gi|256687397|gb|ACV05199.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Kytococcus
sedentarius DSM 20547]
Length = 516
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 59 GPHKASSVGKPVRR-EMAIPDE-NGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF 115
G +A S+G P+R EMAI D G + G++ IR E M +NPEA + A +
Sbjct: 323 GRTRAGSIGHPIRGVEMAILDPVTGQPVEPGEVGEVVIRGENIMKGYWDNPEATERAIRD 382
Query: 116 GWFLSGDLGYFD 127
GWF SGDLG D
Sbjct: 383 GWFHSGDLGRVD 394
>gi|367466820|ref|ZP_09466907.1| Long-chain-fatty-acid--CoA ligase [Patulibacter sp. I11]
gi|365817934|gb|EHN12876.1| Long-chain-fatty-acid--CoA ligase [Patulibacter sp. I11]
Length = 506
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 53 VLLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKT 111
+L P++ KA S G+P V E + D+ G G++ R P +A KT
Sbjct: 313 ILAPEDQVRKAGSAGRPAVNVETRVVDDAGATLPPGEVGEIVHRS-PQATLGYWDQAGKT 371
Query: 112 AFQF--GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVF 163
A F GWF SGDLG FD + L T VD K+ K NVAS +V + ++
Sbjct: 372 AESFAGGWFHSGDLGVFDEEGYL-------TVVDRKKDMIKTGGENVASREVEEVLY 421
>gi|443686823|gb|ELT89970.1| hypothetical protein CAPTEDRAFT_227109 [Capitella teleta]
Length = 544
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 59 GPHKASSVGKPV-RREMAIPD-ENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF 115
P SSVG P+ ++A+ D +NG AN +G++C+ G M+ +NN EA
Sbjct: 348 APDLPSSVGLPMPHYKLAVRDLKNGEFLPANKHGEICVSGPGVMMGYLNNKEATDAMIDA 407
Query: 116 -GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
GW +GD+GY+DS + VD +KE K
Sbjct: 408 NGWLATGDIGYYDSNGYFYI-------VDRLKELIK 436
>gi|312198108|ref|YP_004018169.1| AMP-dependent synthetase and ligase [Frankia sp. EuI1c]
gi|311229444|gb|ADP82299.1| AMP-dependent synthetase and ligase [Frankia sp. EuI1c]
Length = 568
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 65 SVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSG 121
SVG+P + ++ D +G G++C R P V R N+ A + +FQ GWF SG
Sbjct: 384 SVGRPNLTADVRTVDADGTPLPPGDTGELCFRS-PQVARGYWNDEAATRASFQDGWFRSG 442
Query: 122 DLGYFDS 128
DLGY D+
Sbjct: 443 DLGYVDA 449
>gi|33333087|gb|AAQ11708.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333089|gb|AAQ11709.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333091|gb|AAQ11710.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333093|gb|AAQ11711.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333099|gb|AAQ11714.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|453076445|ref|ZP_21979220.1| o-succinylbenzoate--CoA ligase [Rhodococcus triatomae BKS 15-14]
gi|452761097|gb|EME19410.1| o-succinylbenzoate--CoA ligase [Rhodococcus triatomae BKS 15-14]
Length = 515
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 61 HKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
H+ +S G+P + I DE G +A G++ +R G +V ++ PEA A FGW
Sbjct: 328 HRLASAGRPGPSTTVGIMDETGALLQAGEKGEIVVR-GDIVMSGYLDQPEATAEAQAFGW 386
Query: 118 FLSGDLGYFDSQ 129
+GD+GY D
Sbjct: 387 HHTGDIGYIDED 398
>gi|33333097|gb|AAQ11713.1| luciferase [Pyrophorus plagiophthalamus]
gi|33333103|gb|AAQ11716.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++CI+ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCIK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|21672887|ref|NP_660952.1| long-chain-fatty-acid-CoA ligase [Chlorobium tepidum TLS]
gi|21645939|gb|AAM71294.1| long-chain-fatty-acid--CoA ligase [Chlorobium tepidum TLS]
Length = 560
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 58/186 (31%)
Query: 56 PKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVN-GKMCIREGP-MVQRINNPEANKT 111
P NG K SVG PV EM I D + G++ ++ G++ IR M NPE
Sbjct: 371 PLNGIRKNGSVGLPVPDVEMRIVDADTGIEVLPSMEIGEIVIRSPQLMTGYWKNPEETAE 430
Query: 112 AFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV-------------- 145
+ GW +GDLGY D L + +++ P+EV+ V
Sbjct: 431 VLRDGWLYTGDLGYIDDDGYLYIVDRKKDVIKPSGFQVWPSEVEEVIAMHPAVLETGVAG 490
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
K +C++ +A +KVPK + + L L GK+
Sbjct: 491 VPDDYQSEAVKAWVVLHKGHSLDAEQLKNWCRQTLAPYKVPKHIEFCEQLPKSAL-GKVL 549
Query: 179 RRIVAE 184
R+ + E
Sbjct: 550 RQALVE 555
>gi|339321483|ref|YP_004680377.1| long-chain-fatty-acid--CoA ligase LcfB [Cupriavidus necator N-1]
gi|338168091|gb|AEI79145.1| long-chain-fatty-acid--CoA ligase LcfB [Cupriavidus necator N-1]
Length = 516
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNG 90
LP + C+ S I VL P + +S G+PV E I DE D G
Sbjct: 300 LPALRFYNCYGQSEIGPLAT-VLGPDEHAGRPASAGRPVLNVETRIVDETMQDVLPGELG 358
Query: 91 KMCIREGPMV-QRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
++ R ++ + PE AF GWF SGDLGY D++ L
Sbjct: 359 EIVHRSPQLLTEYWAKPEQTAEAFTGGWFHSGDLGYMDAEGYL 401
>gi|344998744|ref|YP_004801598.1| AMP-dependent synthetase and ligase [Streptomyces sp. SirexAA-E]
gi|344314370|gb|AEN09058.1| AMP-dependent synthetase and ligase [Streptomyces sp. SirexAA-E]
Length = 555
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 60/166 (36%)
Query: 76 IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLN 133
I DENG D G++ +R GP V N PEA + AF G +GD+G+ D+Q L
Sbjct: 392 IIDENGDDVPFGEQGEIAVR-GPQVVSGYWNLPEATEAAFPDGELRTGDIGFMDAQGWLY 450
Query: 134 M------------WKISPTEVD-------AVKE--------------------------- 147
+ +K+ P EV+ AV+E
Sbjct: 451 VVDRKKDMINASGFKVWPREVEDVLHTHPAVREAAVVGVPDAYRGESVRAYVSLRPGAEV 510
Query: 148 -------FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
+CK +A++K P++V I L K +GKI RR ELR
Sbjct: 511 DPAALGAYCKERLAAYKYPREVEILTELP-KTASGKILRR---ELR 552
>gi|255074551|ref|XP_002500950.1| predicted protein [Micromonas sp. RCC299]
gi|226516213|gb|ACO62208.1| predicted protein [Micromonas sp. RCC299]
Length = 1664
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 56 PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAF 113
P +A S G+ + E+AI D++G ++ AN + +G +V R N+PEA K +F
Sbjct: 437 PGYALERAGSSGQAICPEIAIVDDSG-ERVANGRVAHIVVKGSIVTRGYENDPEATKASF 495
Query: 114 Q-FGWFLSGDLGYFDSQRCL 132
GWF +GD+G+ D+ L
Sbjct: 496 HPGGWFKTGDMGWMDADGYL 515
>gi|255584945|ref|XP_002533186.1| AMP dependent CoA ligase, putative [Ricinus communis]
gi|223527010|gb|EEF29200.1| AMP dependent CoA ligase, putative [Ricinus communis]
Length = 557
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 64/213 (30%)
Query: 29 RVYLP-PRLEFGCFVTSA---ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGV 82
R LP +L G +T A +S+C F P K+ + G VR EM I D + G
Sbjct: 336 RAKLPNAKLGQGYGMTEAGPVLSMCLAFAKEPFE--IKSGACGTVVRNAEMKIVDPDTGK 393
Query: 83 DQKANVNGKMCIREGPMVQ-RINNPEAN-KTAFQFGWFLSGDLGYFDSQRCL-------- 132
+ N G++CIR +++ +N+PEA +T + GW +GD+GY D L
Sbjct: 394 SLQRNQAGEICIRGSQIMKGYLNDPEATERTIDKEGWLHTGDVGYIDGDDELFIVDRLKE 453
Query: 133 ----NMWKISPTEVDA-----------------------------------------VKE 147
N ++++P E++A V++
Sbjct: 454 LIKYNGFQVAPAELEAMLIAHPSISDAAVVPMKDEAAGEIPAAFVVRSNGSKITEDDVQQ 513
Query: 148 FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+ + V +K ++VF DS+ P +GKI R+
Sbjct: 514 YISKQVIYYKRIRRVFFTDSIPKAP-SGKILRK 545
>gi|332018273|gb|EGI58878.1| Luciferin 4-monooxygenase [Acromyrmex echinatior]
Length = 532
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 93 CIREGPMVQRINNPEANK-TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
C+ E M+ NNPEA K T Q GW +GD+GYFD++ L++ +D VKE K
Sbjct: 382 CMGEQVMLGYWNNPEATKQTIDQDGWLHTGDIGYFDNKNRLHV-------IDRVKELIK 433
>gi|254460388|ref|ZP_05073804.1| AMP-dependent synthetase and ligase [Rhodobacterales bacterium
HTCC2083]
gi|206676977|gb|EDZ41464.1| AMP-dependent synthetase and ligase [Rhodobacteraceae bacterium
HTCC2083]
Length = 501
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE---GPMVQ 101
+S C+ F+ P +++G+ R +A+ +NG + G + + G M+
Sbjct: 302 MSECSTFISSSPTRPAPTNTLGRTQNGRRIAVIRDNGTEAATGDLGTIAVHHSDPGLMLG 361
Query: 102 RINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+N P+ + FQ WF++GDLG D+ ++ +++SP E++A
Sbjct: 362 YLNAPDETEARFQGDWFMTGDLGRCDTNGAISYEGRSDDMLNAGGFRVSPLEIEAA 417
>gi|452840872|gb|EME42809.1| hypothetical protein DOTSEDRAFT_88860 [Dothistroma septosporum
NZE10]
Length = 593
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 65 SVGKPVRR-EMAIPDENGVDQKANVN-GKMCIREGP--MVQRINNPEANKTAFQFGWFLS 120
SVG+P+ E+ + +EN G++ +R GP M + + NPEA AF GW +
Sbjct: 408 SVGRPIPGFEIKMSEENRSQLTGGQEVGELFVR-GPEMMSEYLGNPEATAKAFVDGWLRT 466
Query: 121 GDLGYFDSQRC-----------LNMWKISPTEV-DAVKEFCKRNVASFKVPKKVFIADSL 168
GD+GY + +N W++SP+E+ DA+ R+V V + + + +
Sbjct: 467 GDVGYIKDGKVYLVDRAKDLIKVNGWQVSPSEIEDAL--LVSRDVKDAAV---IGVGEGI 521
Query: 169 SGKPL 173
S P+
Sbjct: 522 SEHPM 526
>gi|403746432|ref|ZP_10954965.1| AMP-dependent synthetase and ligase [Alicyclobacillus hesperidum
URH17-3-68]
gi|403120763|gb|EJY55117.1| AMP-dependent synthetase and ligase [Alicyclobacillus hesperidum
URH17-3-68]
Length = 453
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 58/185 (31%)
Query: 59 GPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF 115
G K S+G P E I DENG D A G++ +R GP V + N P + +
Sbjct: 268 GERKNGSIGIPFPDTEARIVDENGNDVAAGEIGELVVR-GPQVMKGYWNKPAETASVLRD 326
Query: 116 GWFLSGDLGYFDSQRCLNM------------WKISPTEVD-------------------- 143
GW +GD+G D + + I P E++
Sbjct: 327 GWLFTGDIGKMDENGFFYIVDRKKDVIIAGGYNIYPREIEEILYEHPAVAEAAVVGVTDS 386
Query: 144 ----AVKEF-----------------CKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
VK F C+ N+A++KVP+ +SL K GKI RR +
Sbjct: 387 YRGQTVKAFIQLKPGQQVTAEEMDAWCRANLAAYKVPRAYEFRESLP-KSAVGKILRREL 445
Query: 183 AELRK 187
E K
Sbjct: 446 TEESK 450
>gi|37930570|gb|AAP68991.1| 4-coumarate:coenzyme A ligase 2 [Salvia miltiorrhiza]
Length = 540
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 18/116 (15%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+S+C F P K+ + G VR EM I D + GV N +G++CIR +++
Sbjct: 342 LSMCLAFAKEPFE--IKSGACGTVVRNAEMKIIDPQTGVSLGRNQSGEICIRGDQIMKGY 399
Query: 103 INNPEANK-TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+N+PE+ K T + GW +GD+G+ D+ L + ++++P E++A+
Sbjct: 400 LNDPESTKNTIDEDGWLHTGDIGFIDADDELFIVDRLKEIIKYKGFQVAPAEIEAL 455
>gi|423017061|ref|ZP_17007782.1| acyl-CoA synthetase [Achromobacter xylosoxidans AXX-A]
gi|338779908|gb|EGP44334.1| acyl-CoA synthetase [Achromobacter xylosoxidans AXX-A]
Length = 543
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQR 130
+++I D+ G A G++C+ GP V NP+AN AF+ GWF +GDLGY D +
Sbjct: 368 QISIQDDAGRPLPAGQTGEICVC-GPAVFAGYYANPQANAKAFRDGWFRTGDLGYQDEEG 426
Query: 131 CL 132
L
Sbjct: 427 YL 428
>gi|313849029|dbj|BAJ41367.1| firefly luciferase [Luciola cruciata]
Length = 548
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>gi|220906757|ref|YP_002482068.1| AMP-dependent synthetase/ligase [Cyanothece sp. PCC 7425]
gi|219863368|gb|ACL43707.1| AMP-dependent synthetase and ligase [Cyanothece sp. PCC 7425]
Length = 502
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF 113
P +G + VG+P+ E+ + DE G A V G++ ++ G ++ NPEA AF
Sbjct: 316 PLHGDRRPGYVGQPLPGVEVRLVDEQGETVPAGVAGEIQVKGPGVFLEYWQNPEATAKAF 375
Query: 114 QFGWFLSGDLGYF--DSQRCLNMWKISPTEVDAVK 146
Q GWF +GD D R L T VD +K
Sbjct: 376 QSGWFRTGDYAVVEQDDYRILGR-----TSVDIIK 405
>gi|126500|sp|P13129.1|LUCI_LUCCR RecName: Full=Luciferin 4-monooxygenase; Short=Luciferase
gi|159051|gb|AAA29135.1| luciferase [Luciola cruciata]
Length = 548
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>gi|418299695|ref|ZP_12911527.1| acyl-CoA synthetase [Agrobacterium tumefaciens CCNWGS0286]
gi|355534848|gb|EHH04147.1| acyl-CoA synthetase [Agrobacterium tumefaciens CCNWGS0286]
Length = 546
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 57/167 (34%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFD--- 127
E+ I ++ G + A G++C+ GP V +NPEAN AF+ GWF +GDLG+ D
Sbjct: 365 EVQIQNDAGEEVGAGETGEICVI-GPAVFAGYYDNPEANAKAFRNGWFRTGDLGHRDENG 423
Query: 128 ----SQRCLNMW-----KISPTEV-------------------DAV-------------- 145
+ R +M+ I P E+ DAV
Sbjct: 424 FVYITGRASDMYISGGSNIYPREIEEKILMHPDISETAVLGVPDAVWGEVGVAVCVAREG 483
Query: 146 --------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K + + +A +K+PK V D++ K GKI ++++ E
Sbjct: 484 ADIAAIDLKAYLEGKMARYKLPKSVVFWDAMP-KSAYGKITKKMIRE 529
>gi|93279181|pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
gi|93279182|pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>gi|88703606|ref|ZP_01101322.1| AMP-dependent synthetase and ligase [Congregibacter litoralis KT71]
gi|88702320|gb|EAQ99423.1| AMP-dependent synthetase and ligase [Congregibacter litoralis KT71]
Length = 566
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 78 DENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK 136
D G D AN G++ +R P+++ +N P+A + GWF +GD+ Y D + +
Sbjct: 398 DSEGADLAANEIGELVVRGAPVIKGYLNRPDATAESIVDGWFRTGDIAYIDEDGFIYL-- 455
Query: 137 ISPTEVDAVKEFCKR---NVASFKVPKKVFIADSLS 169
VD K+ R NV +V +F D+++
Sbjct: 456 -----VDRAKDMVLRGGENVYCAEVENALFSHDAVA 486
>gi|93279183|pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>gi|295396259|ref|ZP_06806437.1| long-chain-fatty-acid-CoA ligase [Brevibacterium mcbrellneri ATCC
49030]
gi|294970913|gb|EFG46810.1| long-chain-fatty-acid-CoA ligase [Brevibacterium mcbrellneri ATCC
49030]
Length = 514
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 61/185 (32%)
Query: 57 KNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAF 113
K KA ++G+PV EM + D + D G++ + GP + N P+ N T+F
Sbjct: 326 KTAVTKAGTIGRPVMHVEMRVVDASRNDVPVGEVGELAL-SGPSIISAYWNRPDTNATSF 384
Query: 114 QFGWFLSGDLGYFDS-------QRCLNMW-----KISPTEV-------DAV--------- 145
+ GWF +GD+ D R +M + P EV DAV
Sbjct: 385 EDGWFFTGDMAKVDEDGYWYIVDRKKDMLITGGENVYPVEVEQMLYRHDAVAEVAVVGTA 444
Query: 146 ----------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKI 177
+EF + ++AS+K+P+++ D L K TGKI
Sbjct: 445 DETWGEVVTAYIVLAGGHTPSDELATRIEEFSREHLASYKIPRRIRFVDELP-KTATGKI 503
Query: 178 QRRIV 182
++ ++
Sbjct: 504 RKTLL 508
>gi|194741830|ref|XP_001953390.1| GF17741 [Drosophila ananassae]
gi|190626449|gb|EDV41973.1| GF17741 [Drosophila ananassae]
Length = 533
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 6 LSIHGAAQLTITPYTNVFLFYKGRVYLPP-----RLEFGCFVTSAISVCTVFVLLPKNGP 60
L GA Q T++ F F GR+ P +L + S+ + V + G
Sbjct: 286 LEYPGATQETMSSIIK-FTFGGGRMTAPTVERLKKLLVNAVLNSSYGMTEVGFMAFNYGH 344
Query: 61 HKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREG-PMVQRINNPEANKTAF-QFGW 117
K ++ G P+ ++ I D++G N G++ + G +P++ K A + GW
Sbjct: 345 LKLTAAGNPLPGAQIKIVDDDGHKLGPNETGEIVVSNGFNWNGYYADPKSTKEALDEEGW 404
Query: 118 FLSGDLGYFDSQRCLNM---------WK---ISPTEVDAV 145
F +GD+GYFD + L M WK + P EV+AV
Sbjct: 405 FRTGDVGYFDDDQYLYMTDRKKEVLKWKGLQMWPAEVEAV 444
>gi|125561726|gb|EAZ07174.1| hypothetical protein OsI_29419 [Oryza sativa Indica Group]
Length = 539
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+S+C F P P K+ + G VR E+ I D + G+ N G++CIR +++
Sbjct: 338 LSMCMAFAKEPT--PVKSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGY 395
Query: 103 INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+NNPEA KT + GW +GD+G+ D + + VD +KE K
Sbjct: 396 LNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFI-------VDRLKELIK 437
>gi|93279184|pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>gi|153832529|ref|ZP_01985196.1| long-chain-fatty-acid--CoA ligase [Vibrio harveyi HY01]
gi|148871324|gb|EDL70196.1| long-chain-fatty-acid--CoA ligase [Vibrio harveyi HY01]
Length = 521
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 58/179 (32%)
Query: 58 NGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQ 114
+G SVG+P+ + I D G Q G++CI+ P V + PEA + A +
Sbjct: 330 DGDRLPGSVGQPLCGYVIKIADVKGHAQAVGELGEVCIKS-PSVMKGYYGRPEATRDALR 388
Query: 115 FGWFLSGDLGYFDSQ-------RCLNM-----WKISPTEV-------------------- 142
GWFL+GD+G D R +M + + P E+
Sbjct: 389 DGWFLTGDIGRVDEHGNLFIVDRVKDMIIRGGYNVYPREIEEVLMCHPDVEMVAVVGEHD 448
Query: 143 ---------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
D + +C+ +A +K P++VFI +L TGKI +R
Sbjct: 449 DRLGEEVHAHVVLHQDAHCCPDTLIAWCREQLADYKYPRRVFIRKALP-MTATGKILKR 506
>gi|71907970|ref|YP_285557.1| acyl-CoA synthetase [Dechloromonas aromatica RCB]
gi|71847591|gb|AAZ47087.1| AMP-dependent synthetase and ligase [Dechloromonas aromatica RCB]
Length = 517
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 80/214 (37%), Gaps = 60/214 (28%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
R LP F C+ S I+ VL P++ +S G+PV E + +E D
Sbjct: 305 RHRLPSMRVFNCYGQSEIAPLAT-VLSPEDHLIAPASAGRPVMNVETRVVNEQMEDMAPG 363
Query: 88 VNGKMCIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDS------------------ 128
G++ R M+ + P+ + AF GWF SGD+GY D
Sbjct: 364 EMGEIIHRSPQAMIGYWDKPDQTEEAFLGGWFHSGDVGYIDENGFLFICDRIKDVINTGG 423
Query: 129 --------QRCL----------------NMWKISPTEVDAVK-----------EFCKRNV 153
+ CL W + + V ++K +F K +
Sbjct: 424 VVVSSREVEECLYTHPAVAEVAVIALPDEKWVEAVSAVVSLKVGAQVSEAELIDFAKGRI 483
Query: 154 ASFKVPKKVFIADSLSGKPLTGKIQRRIVAELRK 187
A FKVPK +F L + GK+ +R ELR+
Sbjct: 484 APFKVPKSIFFKQELP-RNTAGKLLKR---ELRR 513
>gi|115476678|ref|NP_001061935.1| Os08g0448000 [Oryza sativa Japonica Group]
gi|75294215|sp|Q6ZAC1.1|4CL5_ORYSJ RecName: Full=Probable 4-coumarate--CoA ligase 5; Short=4CL 5;
Short=Os4CL5; AltName: Full=4-coumaroyl-CoA synthase 5
gi|42408287|dbj|BAD09442.1| putative 4-coumarate-CoA ligase [Oryza sativa Japonica Group]
gi|42409468|dbj|BAD09825.1| putative 4-coumarate-CoA ligase [Oryza sativa Japonica Group]
gi|113623904|dbj|BAF23849.1| Os08g0448000 [Oryza sativa Japonica Group]
gi|125603597|gb|EAZ42922.1| hypothetical protein OsJ_27512 [Oryza sativa Japonica Group]
Length = 539
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+S+C F P P K+ + G VR E+ I D + G+ N G++CIR +++
Sbjct: 338 LSMCMAFAKEPT--PVKSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGY 395
Query: 103 INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+NNPEA KT + GW +GD+G+ D + + VD +KE K
Sbjct: 396 LNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFI-------VDRLKELIK 437
>gi|403237890|ref|ZP_10916476.1| O-succinylbenzoic acid--CoA ligase [Bacillus sp. 10403023]
Length = 490
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 57/196 (29%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
+ V L P+ K S GKP+ +++G+ N G++ ++ GP V + +N
Sbjct: 294 TASQVVTLAPEYSISKLGSAGKPLFPVEIKIEKDGLIANPNEVGEIVVK-GPNVTKGYLN 352
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDA-------- 144
+A T+ GW SGD+GY D + L + I P E++A
Sbjct: 353 RVDATTTSIIDGWLYSGDMGYLDEEGFLFVMDRRSDLIISGGENIYPAEIEAALLAHPSI 412
Query: 145 ---------------------------------VKEFCKRNVASFKVPKKVFIADSLSGK 171
+ FC +A +KVPK + DSL +
Sbjct: 413 LEAGVTGLEHEEWGQVPAAFVKLDDGSGLTEDDIMAFCYERLARYKVPKSIHFVDSLP-R 471
Query: 172 PLTGKIQRRIVAELRK 187
+ K+ RR + +L K
Sbjct: 472 NASNKLMRRKLVDLIK 487
>gi|18859661|ref|NP_572988.1| pudgy, isoform A [Drosophila melanogaster]
gi|320542075|ref|NP_001188590.1| pudgy, isoform B [Drosophila melanogaster]
gi|386764429|ref|NP_001245673.1| pudgy, isoform C [Drosophila melanogaster]
gi|5052510|gb|AAD38585.1|AF145610_1 BcDNA.GH02901 [Drosophila melanogaster]
gi|22832255|gb|AAF48408.2| pudgy, isoform A [Drosophila melanogaster]
gi|220943636|gb|ACL84361.1| CG9009-PA [synthetic construct]
gi|281183439|gb|ADA53588.1| MIP13254p [Drosophila melanogaster]
gi|318069377|gb|ADV37672.1| pudgy, isoform B [Drosophila melanogaster]
gi|383293396|gb|AFH07387.1| pudgy, isoform C [Drosophila melanogaster]
Length = 597
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKA---NVNGKMCIREGP--MVQRINN 105
V +L P+ AS+ P E I +G D K G++C+R GP M +NN
Sbjct: 402 VVLLTPEGNKVYASTGVLPASTEAKIVPLDGSDAKGVGPRTTGELCVR-GPQVMAGYLNN 460
Query: 106 PEANKTAFQFG-WFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
EAN+ F G W SGD+ ++D + D +KE K V F+VP
Sbjct: 461 DEANQVTFYPGNWLRSGDVAFYDEDGLFYI-------TDRMKELIK--VKGFQVP 506
>gi|407696003|ref|YP_006820791.1| AMP-dependent synthetase and ligase [Alcanivorax dieselolei B5]
gi|407253341|gb|AFT70448.1| AMP-dependent synthetase and ligase [Alcanivorax dieselolei B5]
Length = 518
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWF 118
K S G+P+ EM I D+N A+ +G++ +R GP+V + N PE A + GW
Sbjct: 331 KMMSAGRPLPMVEMRIVDDNDNPVPAHTHGEIVVR-GPVVMQGYWNKPEQTDDALRGGWM 389
Query: 119 LSGDLGYFDSQRCLNMWKISPTEVDAVKEFC---KRNVASFKVPKKVF 163
+GD GY D + + VD +K+ NV S +V + V
Sbjct: 390 HTGDAGYMDEDGFVYV-------VDRIKDMIVTGGENVYSAEVEEAVL 430
>gi|418409716|ref|ZP_12983027.1| acyl-CoA synthetase [Agrobacterium tumefaciens 5A]
gi|358003765|gb|EHJ96095.1| acyl-CoA synthetase [Agrobacterium tumefaciens 5A]
Length = 546
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 57/167 (34%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFD--- 127
E+ I ++ G + A G++C+ GP V +NPEAN AF+ GWF +GDLG+ D
Sbjct: 365 EVQIQNDAGEEVGAGETGEICVI-GPAVFAGYYDNPEANAKAFRNGWFRTGDLGHRDENG 423
Query: 128 ----SQRCLNMW-----KISPTEV-------------------DAV-------------- 145
+ R +M+ I P E+ DAV
Sbjct: 424 FVYITGRASDMYISGGSNIYPREIEEKILMHPDISETAVLGVPDAVWGEVGVAVCVAREG 483
Query: 146 --------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K + + +A +K+PK V D++ K GKI ++++ E
Sbjct: 484 ADIAAIDLKAYLEGKMARYKLPKSVVFWDAMP-KSAYGKITKKMIRE 529
>gi|312197912|ref|YP_004017973.1| AMP-dependent synthetase and ligase [Frankia sp. EuI1c]
gi|311229248|gb|ADP82103.1| AMP-dependent synthetase and ligase [Frankia sp. EuI1c]
Length = 529
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 86 ANVNGKMCIREGPMVQ--RINNPEANKTAFQF-GWFLSGDLGYFDSQRCL 132
A V G++ +R GP V NNPEA AF GWF SGD+GY D CL
Sbjct: 371 AGVAGEIVVR-GPNVTPGYWNNPEATSAAFDDDGWFHSGDVGYLDDDGCL 419
>gi|149919197|ref|ZP_01907680.1| putative long-chain-fatty-acid--CoA ligase [Plesiocystis pacifica
SIR-1]
gi|149819911|gb|EDM79333.1| putative long-chain-fatty-acid--CoA ligase [Plesiocystis pacifica
SIR-1]
Length = 530
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 52 FVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEA 108
F L P+ K +VG P+ ++ + DE G A+ G++ IR GP V NPEA
Sbjct: 335 FWLPPERVREKPGAVGWPLMHVDVRVADETGEPCPADGVGELWIR-GPHVSPGYYANPEA 393
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNM 134
+F GW +GDL D++ C+ +
Sbjct: 394 TAASFVDGWLRTGDLAVADAEGCVTI 419
>gi|376252120|ref|YP_005139001.1| putative substrate-CoA ligase [Corynebacterium diphtheriae HC03]
gi|372113624|gb|AEX79683.1| putative substrate-CoA ligase [Corynebacterium diphtheriae HC03]
Length = 537
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 64/193 (33%)
Query: 54 LLPKNGPHKASSVGKPV---RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEA 108
L P K S G P+ + ++ PD ++ +V G++ +R GP V NNPE
Sbjct: 337 LPPAMTEKKIGSCGVPMPYTQVKLVDPDTGKDIKEPHVTGELWVR-GPNVATGYWNNPEM 395
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV-------------- 142
+ A+ GWF SGDLGY D + + P EV
Sbjct: 396 TQKAYTAGWFHSGDLGYKDEDGYFYIVDRLKDLIITGGENVYPAEVERVIAENDDIFGNA 455
Query: 143 ---------------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTG 175
DA++ C+R++A +K+P+ + + D + + G
Sbjct: 456 VVGFPDERWGETIVAVVQPRPGATITIDALRAHCERHLARYKLPRHLVVVDEIL-RNSAG 514
Query: 176 KIQ----RRIVAE 184
KI RR+V E
Sbjct: 515 KIDKIGLRRVVEE 527
>gi|312200539|ref|YP_004020600.1| AMP-dependent synthetase and ligase [Frankia sp. EuI1c]
gi|311231875|gb|ADP84730.1| AMP-dependent synthetase and ligase [Frankia sp. EuI1c]
Length = 532
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 49 CTVFVLLPKNGPHKA---SSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGP--MVQR 102
CT + + P +A SVGKPV E+ I +G + +G++C+R GP M
Sbjct: 336 CTEAAAIVSSAPRRAIRIGSVGKPVGGVEVRIERRDGTEAVVGEDGEICLR-GPSLMSGY 394
Query: 103 INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN 152
N PE + GW +GD+G D L + VD +K+ RN
Sbjct: 395 WNAPEETAKVLRGGWLHTGDVGKCDEDGYLYV-------VDRIKDVIIRN 437
>gi|226295471|gb|ACO40513.1| 4-coumarate:CoA ligase [Pinus massoniana]
Length = 537
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 58/177 (32%)
Query: 60 PHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR--INNPEANK-TAFQ 114
P K+ S G VR ++ I D E G N G++CIR GP + + IN+PE+ T +
Sbjct: 354 PVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIR-GPEIMKGYINDPESTAATIDE 412
Query: 115 FGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA------------------ 144
GW +GD+GY D + + ++++P E++A
Sbjct: 413 EGWLHTGDVGYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKH 472
Query: 145 ---------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+KEF + V +K +V+ D++ P +GKI R+
Sbjct: 473 EETGEVPVAFVVKSSEISEQEIKEFVAKQVVFYKKIHRVYFVDAIPKSP-SGKILRK 528
>gi|195443650|ref|XP_002069512.1| GK11566 [Drosophila willistoni]
gi|194165597|gb|EDW80498.1| GK11566 [Drosophila willistoni]
Length = 532
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40 CFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP 98
++SA + V + G K S+ GKP+ + + I +E G + + G++C+ G
Sbjct: 323 AIISSAYGMTEVGSIALNLGQVKLSAAGKPLPGKRIRIINEQGKNLGYHEIGEICVHTGR 382
Query: 99 MVQ-RINNPE-ANKTAFQFGWFLSGDLGYFDSQRCL 132
+ NNPE +++ GWF +GD+GYFD L
Sbjct: 383 VWSGYYNNPEESHRVQDDEGWFHTGDMGYFDEDNYL 418
>gi|422320904|ref|ZP_16401958.1| AMP-dependent synthetase and ligase, partial [Achromobacter
xylosoxidans C54]
gi|317404271|gb|EFV84703.1| AMP-dependent synthetase and ligase [Achromobacter xylosoxidans
C54]
Length = 418
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDS 128
+++I DE G A G++C+ GP V +NP AN AF+ GWF +GDLGY D
Sbjct: 243 QVSIQDEAGNPLPAGRTGEICVC-GPAVFAGYYDNPAANAKAFRNGWFRTGDLGYQDD 299
>gi|256861692|gb|ACV32532.1| codon optimized luciferase RE9 [synthetic construct]
Length = 548
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILVTPIGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|222636016|gb|EEE66148.1| hypothetical protein OsJ_22216 [Oryza sativa Japonica Group]
Length = 531
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQRINNPEANK-TAFQFGW 117
K+ S G VR E+ I D + G N +G++CIR E M +N+PE+ K T + GW
Sbjct: 337 KSGSCGTVVRNAELKIVDPDTGATLGRNQSGEICIRGEQIMKGYLNDPESTKNTIDKGGW 396
Query: 118 FLSGDLGYFDSQRCLNM------------WKISPTEVDA--------------------- 144
+GD+GY D + + +++ P E++A
Sbjct: 397 LHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIA 456
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+K+F + V +K KVF ADS+ P +GKI R+
Sbjct: 457 GEVPVAFIVRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSP-SGKILRK 511
>gi|332715694|ref|YP_004443160.1| acyl-CoA synthase [Agrobacterium sp. H13-3]
gi|325062379|gb|ADY66069.1| acyl-CoA synthase [Agrobacterium sp. H13-3]
Length = 546
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 57/167 (34%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFD--- 127
E+ I ++ G + A G++C+ GP V +NPEAN AF+ GWF +GDLG+ D
Sbjct: 365 EVQIQNDAGEEIGAGETGEICVI-GPAVFAGYYDNPEANAKAFRNGWFRTGDLGHRDENG 423
Query: 128 ----SQRCLNMW-----KISPTEV-------------------DAV-------------- 145
+ R +M+ I P E+ DAV
Sbjct: 424 FLYITGRASDMYISGGSNIYPREIEEKILMHPDISETAVLGVPDAVWGEVGVAVCVAREG 483
Query: 146 --------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K + + +A +K+PK V D++ K GKI ++++ E
Sbjct: 484 ADIAAIDLKAYLEGKMARYKLPKSVVFWDAMP-KSAYGKITKKMIRE 529
>gi|410630782|ref|ZP_11341469.1| AMP-dependent synthetase and ligase [Glaciecola arctica BSs20135]
gi|410149748|dbj|GAC18336.1| AMP-dependent synthetase and ligase [Glaciecola arctica BSs20135]
Length = 531
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 68/176 (38%), Gaps = 61/176 (34%)
Query: 67 GKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDL 123
G PV E AI DE G + G++ R GP V NPEA+ A +FGW +GDL
Sbjct: 349 GVPVCTAEQAILDEFGNELPNGEVGEIVWR-GPQVMSGYYKNPEASDEAVRFGWHHTGDL 407
Query: 124 GYFDSQR---------------------------------------------------CL 132
G D+Q C+
Sbjct: 408 GLIDNQGQLLFIDRIKDTIKSGGENVSSQKVEQILESLEGVERAAAFGISHPHWGEAVCV 467
Query: 133 NMWKISPTEVD--AVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELR 186
M S E+D ++ CK ++ F+VPK +F DSL P+TG + R V ELR
Sbjct: 468 CMIIQSGAEMDKAEIELHCKAHLGKFEVPKAIFFCDSL---PVTGTGKVRKV-ELR 519
>gi|119505624|ref|ZP_01627695.1| acyl-CoA synthase [marine gamma proteobacterium HTCC2080]
gi|119458567|gb|EAW39671.1| acyl-CoA synthase [marine gamma proteobacterium HTCC2080]
Length = 520
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 63/197 (31%)
Query: 50 TVFVLLPKN-------GPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP-MV 100
TV L P++ PH +S GK E+ I D GV+ N G++C+R M+
Sbjct: 314 TVIALSPEDHDKAIAGSPHLLTSCGKACPGNEVKIVDTEGVELGPNQTGEICLRSASNML 373
Query: 101 QRINNPEANKTAFQFGWFLSGDLGYFDSQ-------RCLNM-----WKISPTEV------ 142
+ N +A GW ++GD G D + R +M + P EV
Sbjct: 374 EYFNRSQATAETLLDGWVMTGDAGTIDEEGYIYLRDRLKDMVVTGGENVYPVEVENVLSG 433
Query: 143 -----------------------------------DAVKEFCKRNVASFKVPKKVFIADS 167
D V FC+ +A FK+P++V +
Sbjct: 434 IPGVIEVAVIGIPDETYGEALLAIFALQPNHMIDADDVIAFCRDKLAGFKIPRRVECIPA 493
Query: 168 LSGKPLTGKIQRRIVAE 184
L P +GKI + + E
Sbjct: 494 LPRNP-SGKILKTTLRE 509
>gi|115469306|ref|NP_001058252.1| Os06g0656500 [Oryza sativa Japonica Group]
gi|75289194|sp|Q67W82.1|4CL4_ORYSJ RecName: Full=Probable 4-coumarate--CoA ligase 4; Short=4CL 4;
Short=Os4CL4; AltName: Full=4-coumaroyl-CoA synthase 4
gi|51536394|dbj|BAD37587.1| putative 4-coumarate--CoA ligase 4CL2 [Oryza sativa Japonica Group]
gi|113596292|dbj|BAF20166.1| Os06g0656500 [Oryza sativa Japonica Group]
gi|215697203|dbj|BAG91197.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 559
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQRINNPEANK-TAFQFGW 117
K+ S G VR E+ I D + G N +G++CIR E M +N+PE+ K T + GW
Sbjct: 365 KSGSCGTVVRNAELKIVDPDTGATLGRNQSGEICIRGEQIMKGYLNDPESTKNTIDKGGW 424
Query: 118 FLSGDLGYFDSQRCLNM------------WKISPTEVDA--------------------- 144
+GD+GY D + + +++ P E++A
Sbjct: 425 LHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIA 484
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+K+F + V +K KVF ADS+ P +GKI R+
Sbjct: 485 GEVPVAFIVRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSP-SGKILRK 539
>gi|384917851|ref|ZP_10017955.1| acyl-CoA synthetase [Citreicella sp. 357]
gi|384468268|gb|EIE52709.1| acyl-CoA synthetase [Citreicella sp. 357]
Length = 500
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 59/178 (33%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWF 118
K SVG+PV E+ I D+ G G++C+R GP V R +PE A F
Sbjct: 317 KIGSVGRPVSMVEVEIRDDTGTSLPVGEVGEICMR-GPKVTRGYWKDPERTAAAMHTDGF 375
Query: 119 L-SGDLGYFDSQRCLNM------------------------------------------W 135
L SGD+GY D++ L + W
Sbjct: 376 LRSGDMGYLDAEGFLYLTDRKKDMIISGGENIASSELERVIFQMPQVADVAVIAKPDEKW 435
Query: 136 KISPT-----------EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
P E++ + FC+ ++A FK PK + + +L P +GKI +R++
Sbjct: 436 GEVPMAVIVPQAGQSLEMEELNAFCRSHLAGFKCPKDMKLVAALPRNP-SGKILKRVL 492
>gi|323500676|gb|ADX86901.1| AMP-binding protein [Helianthus annuus]
Length = 400
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 24/96 (25%)
Query: 103 INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISP-------TEVDAVKE-------- 147
+ NP+AN AF GWF SGDL + W SP TEVD E
Sbjct: 298 LKNPKANSEAFAHGWFHSGDLAV------KHPWGESPCAFVTLKTEVDKSDEGIVAKDIM 351
Query: 148 -FCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
FC ++ + VPK + L K TGK+Q+ ++
Sbjct: 352 KFCLAHMPGYWVPKSIVFG--LLPKTATGKVQKHLL 385
>gi|322697606|gb|EFY89384.1| hypothetical protein MAC_04570 [Metarhizium acridum CQMa 102]
Length = 545
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 19/123 (15%)
Query: 42 VTSAISVCTVFVLLPKNGPHKAS-SVGKPV-RREMAIPDENGVD-QKANVNGKMCIREGP 98
+T V T+F+ G H + SVG+ + E+ + D++G + V G++C+R GP
Sbjct: 332 MTETSCVATMFLY----GEHDDTGSVGRIIPNVELKLIDDDGREILDYGVRGEICVR-GP 386
Query: 99 MVQ--RINNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVAS 155
V NNP+AN +F GW+ +GD+GY D + W I VD KE K V
Sbjct: 387 TVTPGYFNNPKANAESFDSDGWYKTGDIGYCDEKTL--KWYI----VDRKKELIK--VRG 438
Query: 156 FKV 158
F+V
Sbjct: 439 FQV 441
>gi|350530832|ref|ZP_08909773.1| long-chain-fatty-acid--CoA ligase [Vibrio rotiferianus DAT722]
Length = 521
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 58/179 (32%)
Query: 58 NGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQ 114
+G SVG+P+ + I D G Q G++CI+ P V + PEA + A +
Sbjct: 330 DGDRLPGSVGQPLCGYVIKIADVKGHGQAIGELGEVCIKS-PSVMKGYYGRPEATRDALR 388
Query: 115 FGWFLSGDLGYFDSQ-------RCLNM-----WKISPTEV-------------------- 142
GWFL+GD+G D R +M + + P E+
Sbjct: 389 DGWFLTGDIGRVDEHGNLFIVDRVKDMIIRGGYNVYPREIEEVLMCHPDVEMVAVVGEHD 448
Query: 143 ---------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
D + +C+ +A +K P++VFI +L TGKI +R
Sbjct: 449 DRLGEEVHAHVVLHQDAHCKSDVLIAWCREQLADYKYPRRVFIRKALP-MTATGKILKR 506
>gi|515503|gb|AAA92669.1| 4-coumarate-CoA ligase enzyme [Pinus taeda]
gi|1143308|gb|AAB42382.1| 4-coumarate:CoA ligase [Pinus taeda]
gi|1143310|gb|AAB42383.1| 4-coumarate:CoA ligase [Pinus taeda]
Length = 537
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 60 PHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR--INNPEANK-TAFQ 114
P K+ S G VR ++ I D E G N G++CIR GP + + IN+PE+ T +
Sbjct: 354 PVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIR-GPEIMKGYINDPESTAATIDE 412
Query: 115 FGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
GW +GD+GY D + + VD VKE K
Sbjct: 413 EGWLHTGDVGYIDDDEEIFI-------VDRVKEIIK 441
>gi|383820793|ref|ZP_09976045.1| long-chain-fatty-acid--CoA ligase [Mycobacterium phlei RIVM601174]
gi|383334339|gb|EID12779.1| long-chain-fatty-acid--CoA ligase [Mycobacterium phlei RIVM601174]
Length = 516
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 65 SVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEAN-KTAFQFGWFLSGDL 123
SVGKP+ ++ I DENG + G++ G + +N+PE K+ + GW GD+
Sbjct: 338 SVGKPMTGKVHILDENGNELPPGEPGEIYFEGGNTFEYLNDPEKTAKSRNEHGWMTVGDV 397
Query: 124 GYFDSQRCLNM 134
GY D + L +
Sbjct: 398 GYVDEEGFLYL 408
>gi|375099320|ref|ZP_09745583.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora cyanea NA-134]
gi|374660052|gb|EHR59930.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora cyanea NA-134]
Length = 504
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 34 PRLEF-GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGK 91
P+L F CF S I+ VL P+ + S G+PV E + D +G D G+
Sbjct: 297 PQLGFYNCFGQSEIAPLAT-VLRPEEHEERPDSAGRPVLFVEARVVDPDGNDVAPGEQGE 355
Query: 92 MCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+ R + N PE + AF+ GWF SGDL D + L + VD +K+
Sbjct: 356 IVYRSPQLATGYWNKPEETEEAFRDGWFHSGDLVRVDEEGYLYV-------VDRIKDVIN 408
Query: 151 RN---VASFKVPKKVF 163
VAS +V ++
Sbjct: 409 TGGVLVASREVEDALY 424
>gi|326381643|ref|ZP_08203337.1| AMP-dependent synthetase and ligase [Gordonia neofelifaecis NRRL
B-59395]
gi|326199890|gb|EGD57070.1| AMP-dependent synthetase and ligase [Gordonia neofelifaecis NRRL
B-59395]
Length = 530
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 70 VRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDS 128
V ++AI +G + G++ R +++ NN +AN TAF GWF GD+GY D
Sbjct: 364 VATDIAIMGGDGTLLPIDAEGEIVYRTPQLMEGYWNNRDANTTAFAHGWFHGGDIGYLDD 423
Query: 129 QRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIADSL 168
+ +W D K+ K NV+S +V + + D++
Sbjct: 424 EAV--VWF-----TDRAKDIIKSGGENVSSVEVERVLLGHDAV 459
>gi|317122446|ref|YP_004102449.1| o-succinylbenzoate--CoA ligase [Thermaerobacter marianensis DSM
12885]
gi|315592426|gb|ADU51722.1| O-succinylbenzoate-CoA ligase [Thermaerobacter marianensis DSM
12885]
Length = 608
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 54 LLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANK 110
L P + K S GKP+ E+ I D++G G++ +R GP V N P+A
Sbjct: 362 LAPADALRKLGSAGKPLFFNELRIVDDDGRPVPPGEVGEIVVR-GPTVTPGYHNRPDATA 420
Query: 111 TAFQFGWFLSGDLGYFD 127
A++ GWF +GDLGY D
Sbjct: 421 RAWRDGWFHTGDLGYVD 437
>gi|315658004|ref|ZP_07910878.1| acetate-CoA ligase [Staphylococcus lugdunensis M23590]
gi|315497040|gb|EFU85361.1| acetate-CoA ligase [Staphylococcus lugdunensis M23590]
Length = 569
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREG---PMVQRINNPEANKTAFQFGW 117
K S+GKP+ E AI D+ G + AN G + I++G M + +NPE ++ F W
Sbjct: 373 KLGSMGKPIPGVEAAIIDDEGNELPANRMGNLAIKKGWPSMMYEIWDNPEKYRSYFIGDW 432
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGK 176
++SGD Y D VD V V F+V K+ ++++ + GK
Sbjct: 433 YISGDSAYKDEDGYFWF----QGRVDDVIMTAGERVGPFEVESKLVEHEAVAEAGVIGK 487
>gi|268609485|ref|ZP_06143212.1| putative long-chain-fatty-acid CoA ligase [Ruminococcus
flavefaciens FD-1]
Length = 859
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 25/133 (18%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINN 105
IS VF P +G K S + V+ +A PD GV G++ I+ +++
Sbjct: 353 ISSTNVFEKYPVSGTGKVSEL-PYVKIRIANPDSEGV-------GEIRIKTKMIMKGYFK 404
Query: 106 PEA-NKTAF-QFGWFLSGDLGYFDSQRCLNMW-------------KISPTEVDA-VKEFC 149
EA K AF + GWF +GDLGY D ++ L++ K+SPT+VD K C
Sbjct: 405 DEALTKAAFDKNGWFCTGDLGYVDKEKNLHIIGRIKESIVLRNGKKVSPTDVDDFYKTLC 464
Query: 150 KR-NVASFKVPKK 161
N+AS +P +
Sbjct: 465 PDINIASCGIPDQ 477
>gi|195566786|ref|XP_002106957.1| GD15826 [Drosophila simulans]
gi|194204353|gb|EDX17929.1| GD15826 [Drosophila simulans]
Length = 600
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKA---NVNGKMCIREGP--MVQRINN 105
V +L P+ AS+ P E I +G D K G++C+R GP M +NN
Sbjct: 405 VVLLTPEGNKVYASTGVLPASTEAKIVPLDGSDAKGVGPRTTGELCVR-GPQVMAGYLNN 463
Query: 106 PEANKTAFQFG-WFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
EAN+ F G W SGD+ ++D + D +KE K V F+VP
Sbjct: 464 DEANQVTFYPGNWLRSGDVAFYDEDGLFYI-------TDRMKELIK--VKGFQVP 509
>gi|111019998|ref|YP_702970.1| AMP-binding acyl-CoA synthetase [Rhodococcus jostii RHA1]
gi|110819528|gb|ABG94812.1| probable AMP-binding acyl-CoA synthetase [Rhodococcus jostii RHA1]
Length = 515
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 13 QLTITPYTNVFLFYKGRVYLPPRLEF--GCFVTSAISVCTVFVLLPKNGPHKASSVGKPV 70
Q +P + L R + PR +F G +T A T + + +S G+P+
Sbjct: 279 QYGASPISETLLREAQRTF--PRADFVQGYGMTEAGPGLTSLSADDHHAATRLNSAGRPM 336
Query: 71 RR-EMAIPDENGVDQKANVNGKMCIREGP-MVQRINNPEANKTAFQFGWFLSGDLGYFDS 128
E+ + D+ GV+ G++ R G M N PE TA + GW +GD GY D
Sbjct: 337 GHVEVRVVDDGGVELPRGEVGEIIARGGNIMAGYWNRPEETATALRDGWLYTGDGGYMDE 396
Query: 129 QRCL 132
L
Sbjct: 397 DGYL 400
>gi|393231486|gb|EJD39078.1| acetyl-CoA synthetase-like protein [Auricularia delicata TFB-10046
SS5]
Length = 1355
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 19/108 (17%)
Query: 56 PKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI--NNPEANKTA 112
P++ P+ S+GKPV EM + E G + A +G + +R GPM+ + NN A +A
Sbjct: 340 PESAPYL--SLGKPVPGMEMRVASEEGAIRLAGESGHLQVR-GPMLFKAYHNNVSATASA 396
Query: 113 F-QFGWFLSGDLGYFDS----------QRCLNM--WKISPTEVDAVKE 147
F + GWF +GDL D+ + CLN+ K+S T+V+ E
Sbjct: 397 FTEDGWFSTGDLALIDADGKLHLVGRDKDCLNINGAKLSSTDVETYIE 444
>gi|374430467|gb|AEZ51502.1| Firefly luciferase [Cloning vector p*Mos_SmActin_Luciferase]
Length = 550
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDNPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>gi|341820060|emb|CCC56290.1| putative O-succinylbenzoate--CoA ligase [Weissella thailandensis
fsh4-2]
Length = 503
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 26 YKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQK 85
++ + YLP +G +T A S+ L P + P KA +VG P+ ++A+ + V +K
Sbjct: 292 FEKQYYLPIIEGYG--MTEAASLIA---LNPFDAP-KAGTVGLPIATDVALLIDGKVSKK 345
Query: 86 ANVNGKMCIREGPMVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
A +G++ +R ++ + ++ +F GW +GDLG FD+ L +
Sbjct: 346 AGQSGEILLRGEHVIT--DYLDSRPDSFHNGWLRTGDLGRFDADGYLKIVGRIKEIISHG 403
Query: 135 -WKISPTEVDAV 145
K++P ++AV
Sbjct: 404 GEKVAPIAIEAV 415
>gi|194754263|ref|XP_001959415.1| GF12065 [Drosophila ananassae]
gi|190620713|gb|EDV36237.1| GF12065 [Drosophila ananassae]
Length = 536
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 40 CFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREG- 97
C +TS + G ++ GKPV ++ I D++G N G++C++ G
Sbjct: 325 CVLTSGYGFTEAGGVTAVLGLGSGNTAGKPVSGVKIRIVDDDGKFLTYNEVGEICVKTGL 384
Query: 98 PMVQRINNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
P NP ++ F GW+ SGDLGYFD + L + VD KE K
Sbjct: 385 PWNGYYGNPLESRRMQDFEGWYHSGDLGYFDEKNLLYI-------VDRKKEILK 431
>gi|407976422|ref|ZP_11157321.1| acyl-CoA synthetase [Nitratireductor indicus C115]
gi|407428033|gb|EKF40718.1| acyl-CoA synthetase [Nitratireductor indicus C115]
Length = 543
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDSQ 129
++ I DE G + G++C+ GP V NNPEAN +F+ GWF +GDLG D Q
Sbjct: 362 QVQIQDEVGNEVALGEPGEICVI-GPAVFAGYYNNPEANAKSFRDGWFRTGDLGRMDEQ 419
>gi|311109344|ref|YP_003982197.1| AMP-binding protein [Achromobacter xylosoxidans A8]
gi|310764033|gb|ADP19482.1| AMP-binding enzyme family protein 27 [Achromobacter xylosoxidans
A8]
Length = 648
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 25/144 (17%)
Query: 21 NVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDEN 80
++F+FY+ + + + +G TS VFV + +G + +VG PV +
Sbjct: 363 DLFVFYRS-IGINLKQLYGSTETS------VFVCVQPDGQVRDDTVGPPV---------D 406
Query: 81 GVDQKANVNGKMCIRE-GPMVQRINNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKIS 138
GV+ + NG++ ++ G + NPEA A GWF +GD GY D+ L +
Sbjct: 407 GVEIRVADNGEILVKSPGLFKEYYRNPEATAEARSADGWFHTGDAGYLDTDGQLKI---- 462
Query: 139 PTEVDAVKEFCKRNVASFKVPKKV 162
+D K+ K S PK +
Sbjct: 463 ---IDRAKDVGKLANGSLFAPKYI 483
>gi|134100572|ref|YP_001106233.1| acyl-CoA synthase [Saccharopolyspora erythraea NRRL 2338]
gi|291006421|ref|ZP_06564394.1| acyl-CoA synthase [Saccharopolyspora erythraea NRRL 2338]
gi|133913195|emb|CAM03308.1| acyl-CoA synthase [Saccharopolyspora erythraea NRRL 2338]
Length = 497
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 65/178 (36%), Gaps = 58/178 (32%)
Query: 59 GPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGW 117
G ++ +VG+PV E+ + D +G G++ IR M + +N PE GW
Sbjct: 303 GFNRLGTVGRPVSAFELQVRDADGAVLGDQQQGELWIRPVRMTEYLNQPELTGRTLVDGW 362
Query: 118 FLSGD------------LGYFDSQRCLNMWKISPTEVDAVK------------------- 146
F SGD G D + K+SP EV+AV
Sbjct: 363 FRSGDRVSREPDGSYLHHGRMDDLEMVGGIKVSPLEVEAVLGAHPGVEEIGVAAVPDEVG 422
Query: 147 -------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
E +R +A FKVP+ V +SL + +GK++R
Sbjct: 423 ATKLRAFVVPADPAQDPAVLERELIELARRRLAPFKVPRSVRTVESLP-RTHSGKLRR 479
>gi|111026995|ref|YP_708973.1| acyl-CoA synthetase [Rhodococcus jostii RHA1]
gi|110825534|gb|ABH00815.1| probable acid-CoA ligase [Rhodococcus jostii RHA1]
Length = 618
Score = 45.1 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQRC 131
E++I D+ G A G +C P+ +NN AN AF GWF +GD+GY +++ C
Sbjct: 434 ELSIQDDRGNLLPAGQRGHICAAGLPVFAGYLNNDAANDEAFVDGWFRTGDIGYLNTRGC 493
Query: 132 L 132
L
Sbjct: 494 L 494
>gi|346421738|gb|AEO27382.1| AMP-dependent synthetase and ligase [Pseudomonas sp. 19-rlim]
Length = 514
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFL 119
+ S G+P + I D G ANV G++CIR ++ +++P++ + GW
Sbjct: 328 RIKSAGQPAPGVSLRIVDSTGAPVAANVLGEICIRSTALMDGYLHSPDSTQAVLHDGWMH 387
Query: 120 SGDLGYFDSQRCL 132
+GD GY D Q L
Sbjct: 388 TGDAGYLDEQGFL 400
>gi|198409907|gb|ACH87769.1| putative fatty acyl-CoA synthetase [Nicrophorus vespillo]
Length = 236
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 12/108 (11%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR- 102
++ T+ VL+ K + SVG+ V ++ I DE+G N G++C + GPM+ +
Sbjct: 137 GMTETTLGVLMTKYNECRFGSVGQIVPSMKVKIVDEDGRALGPNQEGELCFK-GPMIMKG 195
Query: 103 -INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEF 148
+ NP + T + GW +GD+GY+D+ + + VD +KE
Sbjct: 196 YVGNPVSTANTIDKDGWLHTGDIGYYDNDKYFFI-------VDRIKEL 236
>gi|83943343|ref|ZP_00955802.1| acyl-CoA synthase [Sulfitobacter sp. EE-36]
gi|83845575|gb|EAP83453.1| acyl-CoA synthase [Sulfitobacter sp. EE-36]
Length = 522
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 50 TVFVLLPKN----GPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE-GPMVQRI 103
T+ +L P++ G + S G+P E+AI D +G KA G++ +R M+
Sbjct: 318 TIAILPPEDHVPEGSERMRSAGRPAMGCEIAIFDPDGKPVKAGEIGEVAVRAPANMLGYW 377
Query: 104 NNPEAN-KTAFQFGWFLSGDLGYFDSQRCL 132
NPEA KT GW LSGD GY D L
Sbjct: 378 KNPEATTKTLRDDGWLLSGDAGYLDEDGYL 407
>gi|33603673|ref|NP_891233.1| acyl-CoA synthetase [Bordetella bronchiseptica RB50]
gi|33577798|emb|CAE35063.1| putative substrate-CoA ligase [Bordetella bronchiseptica RB50]
Length = 497
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 58/177 (32%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWF 118
K S G+ + E+ I D G AN G++C+R GP V + N PE AF W
Sbjct: 317 KIGSTGRALPHVEIRIADGAGGWLPANQKGEICMR-GPKVTKGYWNAPEKTAEAFYGDWL 375
Query: 119 LSGDLGYFDSQ-------RCLNMW-----KISPTEVDA---------------------- 144
SGD+GY D + R +M ++ +EV+A
Sbjct: 376 RSGDVGYLDEEGFLFVTDRTKDMILTGAENVASSEVEAALYELPQIAEAAVIGVHDDKWG 435
Query: 145 -------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ C++ +ASFKVP+++ + L P +GK+ +R++
Sbjct: 436 ERITAVVVLNPGQTLTLEEIDRHCRQRLASFKVPRELKVVAELPRNP-SGKVLKRVL 491
>gi|421872069|ref|ZP_16303688.1| O-succinylbenzoate-CoA ligase [Brevibacillus laterosporus GI-9]
gi|372458681|emb|CCF13237.1| O-succinylbenzoate-CoA ligase [Brevibacillus laterosporus GI-9]
Length = 519
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 21 NVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDE 79
+ L+Y+ R LP FG TS TV +L ++ HK S+GKPV E+ + DE
Sbjct: 302 ELILYYQDRG-LPFGQGFGLTETSP----TVCMLSAEDARHKVGSIGKPVLFCEIRLVDE 356
Query: 80 NGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
+ + G++ I+ GP V + N P A + GWF +GDL D + L
Sbjct: 357 HDQEVPNGEVGELAIK-GPHVMKEYWNLPNETAKAMRNGWFYTGDLARRDEEGFL 410
>gi|326513880|dbj|BAJ87958.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 554
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 60/192 (31%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+S+C F P K+ S G VR E+ I D + G N+ G++CIR +++
Sbjct: 346 LSMCLAFAKEPFA--VKSGSCGTVVRNAELKIVDPDTGASLARNLPGEICIRGKQIMKGY 403
Query: 103 INNPEANK-TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----- 144
+N+PEA K T + GW +GD+GY D + + +++ P E++A
Sbjct: 404 LNDPEATKNTIDKDGWLHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITH 463
Query: 145 ------------------------------------VKEFCKRNVASFKVPKKVFIADSL 168
+K+F + V +K KVF ADS+
Sbjct: 464 AEIKDAAVVSMQDELTGEVPVAFIVRIEGSEISESEIKQFVAKEVVFYKRIHKVFFADSV 523
Query: 169 SGKPLTGKIQRR 180
P GKI R+
Sbjct: 524 PKSP-AGKILRK 534
>gi|159036889|ref|YP_001536142.1| AMP-dependent synthetase and ligase [Salinispora arenicola CNS-205]
gi|157915724|gb|ABV97151.1| AMP-dependent synthetase and ligase [Salinispora arenicola CNS-205]
Length = 5154
Score = 45.1 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 72/197 (36%), Gaps = 60/197 (30%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPVRR---EMAIPDENGVDQKANVNGKMCIREGP--M 99
+ C + P +GP S G PV + P G D A G++ + GP M
Sbjct: 308 STETCGAITINPPDGPRINGSCGLPVPGVGVRIVDPTTGG-DLPAGAEGEVWV-SGPNVM 365
Query: 100 VQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVKE 147
V N+PEA A + GWF +GDL D L + I P EV+AV
Sbjct: 366 VGYHNSPEATAKAMRDGWFRTGDLARRDGAGYLTISGRIKELVIRGGENIHPVEVEAVLR 425
Query: 148 F----------------------------------------CKRNVASFKVPKKVFIADS 167
C+ ++++KVP +V S
Sbjct: 426 TVPGVADVAVAGVPHETLGEVPVAYVIPGPDGFDVESLVTRCREQLSAYKVPHQVHEVAS 485
Query: 168 LSGKPLTGKIQRRIVAE 184
+ + +GK+QRR++ E
Sbjct: 486 IP-RTASGKVQRRLLVE 501
>gi|88603692|ref|YP_503870.1| AMP-dependent synthetase/ligase [Methanospirillum hungatei JF-1]
gi|88189154|gb|ABD42151.1| AMP-dependent synthetase and ligase [Methanospirillum hungatei
JF-1]
Length = 517
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 21/113 (18%)
Query: 53 VLLPKNGP--HKASSVGKPVRREMAIPDENGVDQKANVN---GKMCIREGPMVQ--RINN 105
V+ P++ P + +SVGKPV E G K + G++ +R GP V N
Sbjct: 315 VIRPEDYPTADEYNSVGKPVGYAEVKIVEVGNPAKELTSPHAGEIALR-GPGVALGYWNQ 373
Query: 106 PEANKTAF-QFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
PE K F + GWFL+GD+GY D L + WK+ PTEV+ V
Sbjct: 374 PEETKEVFMEDGWFLTGDIGYIDDHGMLVITDRKKDMIIMSGWKVYPTEVENV 426
>gi|410474743|ref|YP_006898024.1| ligase [Bordetella parapertussis Bpp5]
gi|412341004|ref|YP_006969759.1| substrate-CoA ligase [Bordetella bronchiseptica 253]
gi|427816684|ref|ZP_18983748.1| putative substrate-CoA ligase [Bordetella bronchiseptica 1289]
gi|408444853|emb|CCJ51634.1| putative ligase [Bordetella parapertussis Bpp5]
gi|408770838|emb|CCJ55636.1| putative substrate-CoA ligase [Bordetella bronchiseptica 253]
gi|410567684|emb|CCN25255.1| putative substrate-CoA ligase [Bordetella bronchiseptica 1289]
Length = 497
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 58/177 (32%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWF 118
K S G+ + E+ I D G AN G++C+R GP V + N PE AF W
Sbjct: 317 KIGSTGRALPHVEIRIADGAGGWLPANQKGEICMR-GPKVTKGYWNAPEKTAEAFYGDWL 375
Query: 119 LSGDLGYFDSQ-------RCLNMW-----KISPTEVDA---------------------- 144
SGD+GY D + R +M ++ +EV+A
Sbjct: 376 RSGDVGYLDEEGFLFVTDRTKDMILTGAENVASSEVEAALYELPQIAEAAVIGVHDDKWG 435
Query: 145 -------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ C++ +ASFKVP+++ + L P +GK+ +R++
Sbjct: 436 ERITAVVVLNPGQTLTLEEIDRHCRQRLASFKVPRELKVVAELPRNP-SGKVLKRVL 491
>gi|423279416|ref|ZP_17258329.1| hypothetical protein HMPREF1203_02546 [Bacteroides fragilis HMW
610]
gi|404584985|gb|EKA89619.1| hypothetical protein HMPREF1203_02546 [Bacteroides fragilis HMW
610]
Length = 485
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRREMAIP--DENGVDQKANVNGKMCIREGPMVQRINNPE 107
+ F+ ++ H +S+GKPV +AI D G + G++C++ ++ PE
Sbjct: 297 STFIEFHQSKGH-LNSIGKPVSSAVAIQIMDSMGKECPVKTEGEICVKGNMVISSYLLPE 355
Query: 108 ANKTAFQFGWFLSGDLGYFDSQRCLNMW------------KISPTEVD 143
N+ AF+ G+F +GD GY D + + K+SP EV+
Sbjct: 356 DNQNAFRDGFFRTGDWGYKDEDGFIYLTGRLKEMINVGGKKVSPVEVE 403
>gi|104781648|ref|YP_608146.1| long-chain-fatty-acid--CoA ligase [Pseudomonas entomophila L48]
gi|95110635|emb|CAK15346.1| putative long-chain-fatty-acid--CoA ligase [Pseudomonas entomophila
L48]
Length = 513
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 60 PHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGW 117
P A+SVG+ E+ + D +G G++ +R P++Q +NP+A + A GW
Sbjct: 323 PRIAASVGRAQACVEVRVVDADGHPLPPGQTGEIAVRGAPVMQGYWDNPQATRAALVDGW 382
Query: 118 FLSGDLGYFDSQRCLNM 134
L+GD+G D Q L +
Sbjct: 383 LLTGDIGQLDEQGYLTL 399
>gi|324998481|ref|ZP_08119593.1| AMP-dependent synthetase and ligase [Pseudonocardia sp. P1]
Length = 542
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 61/187 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P + K SS G PV ++ I + +G G++ R GP + N +AN A
Sbjct: 353 PSHQWQKFSSWGAPVATTDVQIMNADGRLLPPGEEGEIVYR-GPQAMQGYHGNEDANTVA 411
Query: 113 FQFGWFLSGDLGYFDSQRCL---------------------------------------- 132
F GWF SGD+GY D L
Sbjct: 412 FAHGWFHSGDVGYLDEDGVLWFTDRLKDIVKSGGENVSSVEVERVLLAHPDVADCAVVGT 471
Query: 133 --NMWKISPT-----------EVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
+ W + T +V+ ++ + K+++A +KVPK+ F+A K TGKIQ+
Sbjct: 472 PDDRWGEAVTAVVVPGDGVAVDVETLRSYAKQHLAGYKVPKR-FVAVEQLPKTTTGKIQK 530
Query: 180 RIVAELR 186
ELR
Sbjct: 531 H---ELR 534
>gi|289550513|ref|YP_003471417.1| acetyl-coenzyme A synthetase [Staphylococcus lugdunensis HKU09-01]
gi|385784142|ref|YP_005760315.1| acetyl-coenzyme A synthetase [Staphylococcus lugdunensis N920143]
gi|418413818|ref|ZP_12987034.1| hypothetical protein HMPREF9308_00199 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180045|gb|ADC87290.1| Acetyl-coenzyme A synthetase [Staphylococcus lugdunensis HKU09-01]
gi|339894398|emb|CCB53676.1| acetyl-coenzyme A synthetase [Staphylococcus lugdunensis N920143]
gi|410877456|gb|EKS25348.1| hypothetical protein HMPREF9308_00199 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 569
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREG---PMVQRINNPEANKTAFQFGW 117
K S+GKP+ E AI D+ G + AN G + I++G M + +NPE ++ F W
Sbjct: 373 KLGSMGKPIPGVEAAIIDDEGNELPANRMGNLAIKKGWPSMMYEIWDNPEKYRSYFIGDW 432
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGK 176
++SGD Y D VD V V F+V K+ ++++ + GK
Sbjct: 433 YISGDSAYKDEDGYFWF----QGRVDDVIMTAGERVGPFEVESKLVEHEAVAEAGVIGK 487
>gi|33333121|gb|AAQ11725.1| luciferase [Pyrophorus plagiophthalamus]
Length = 543
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 20/117 (17%)
Query: 62 KASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF-G 116
K+ S+G+ P+ E G N G++C++ GPMV + +NN +A K A G
Sbjct: 355 KSGSLGRVTPLMAAKIADRETGKALGPNQVGELCVK-GPMVSKGYVNNVKATKEAIDDDG 413
Query: 117 WFLSGDLGYFDSQR---CLNMWK---------ISPTEVDAV--KEFCKRNVASFKVP 159
W SGD GY+D ++ +K ++P E++ + K C R+VA +P
Sbjct: 414 WLHSGDFGYYDEDEHFYVVDRYKELIKYKGSQVAPAELEEILLKNPCIRDVAVVGIP 470
>gi|428135550|gb|AFY97682.1| 4-coumarate:coenzyme A ligase 2 [Pyrus pyrifolia]
Length = 547
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 17/130 (13%)
Query: 29 RVYLP-PRLEFGCFVTSA---ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGV 82
R LP +L G +T A +S+C F P K+ + G VR EM I D + G
Sbjct: 326 RAKLPNAKLGQGYGMTEAGPVLSMCLAFAKEPFE--IKSGACGTVVRNAEMKIVDPDTGA 383
Query: 83 DQKANVNGKMCIREGPMVQ-RINNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPT 140
N G++CIR +++ +N+PEA +T + GW +GD+GY D L +
Sbjct: 384 SLTRNQAGEICIRGSQIMKGYLNDPEATERTVDKRGWLHTGDIGYIDGDDELFI------ 437
Query: 141 EVDAVKEFCK 150
VD +KE K
Sbjct: 438 -VDRLKELIK 446
>gi|339008736|ref|ZP_08641309.1| long-chain-fatty-acid--CoA ligase [Brevibacillus laterosporus LMG
15441]
gi|338774536|gb|EGP34066.1| long-chain-fatty-acid--CoA ligase [Brevibacillus laterosporus LMG
15441]
Length = 519
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 21 NVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDE 79
+ L+Y+ R LP FG TS TV +L ++ HK S+GKPV E+ + DE
Sbjct: 302 ELILYYQDR-GLPFGQGFGLTETSP----TVCMLSAEDARHKVGSIGKPVLFCEIRLVDE 356
Query: 80 NGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
+ + G++ I+ GP V + N P A + GWF +GDL D + L
Sbjct: 357 HDQEVPNGEVGELAIK-GPHVMKEYWNLPNETAKAMRNGWFYTGDLARRDEEGFL 410
>gi|418636580|ref|ZP_13198926.1| acetyl-coenzyme A synthetase [Staphylococcus lugdunensis VCU139]
gi|374840635|gb|EHS04120.1| acetyl-coenzyme A synthetase [Staphylococcus lugdunensis VCU139]
Length = 569
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREG---PMVQRINNPEANKTAFQFGW 117
K S+GKP+ E AI D+ G + AN G + I++G M + +NPE ++ F W
Sbjct: 373 KLGSMGKPIPGVEAAIIDDEGNELPANRMGNLAIKKGWPSMMYEIWDNPEKYRSYFIGDW 432
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGK 176
++SGD Y D VD V V F+V K+ ++++ + GK
Sbjct: 433 YISGDSAYKDEDGYFWF----QGRVDDVIMTAGERVGPFEVESKLVEHEAVAEAGVIGK 487
>gi|145225137|ref|YP_001135815.1| acyl-CoA synthetase [Mycobacterium gilvum PYR-GCK]
gi|145217623|gb|ABP47027.1| AMP-dependent synthetase and ligase [Mycobacterium gilvum PYR-GCK]
Length = 529
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP-MVQRINNPEANKT 111
L P + G+P V E AI D++ G++ R MV +++P+
Sbjct: 338 LGPDEQDRHGGAAGRPAVNVETAILDDSDNPVPPGTVGEIAHRSPHLMVGYLDDPQRTAE 397
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIADSL 168
AF+ WF SGDLGY+D L++ VD K+ K NVAS +V + ++ D +
Sbjct: 398 AFRGDWFHSGDLGYYDEFGLLHV-------VDRKKDMIKSGGENVASREVEEVLYQHDDV 450
Query: 169 SGKPLTG 175
+ G
Sbjct: 451 QEAAVFG 457
>gi|410422146|ref|YP_006902595.1| substrate-CoA ligase [Bordetella bronchiseptica MO149]
gi|427820164|ref|ZP_18987227.1| putative substrate-CoA ligase [Bordetella bronchiseptica D445]
gi|427822757|ref|ZP_18989819.1| putative substrate-CoA ligase [Bordetella bronchiseptica Bbr77]
gi|408449441|emb|CCJ61132.1| putative substrate-CoA ligase [Bordetella bronchiseptica MO149]
gi|410571164|emb|CCN19382.1| putative substrate-CoA ligase [Bordetella bronchiseptica D445]
gi|410588022|emb|CCN03075.1| putative substrate-CoA ligase [Bordetella bronchiseptica Bbr77]
Length = 497
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 58/178 (32%)
Query: 61 HKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
K S G+ + E+ I D G AN G++C+R GP V + N PE AF W
Sbjct: 316 EKIGSTGRALPHVEIRIADGAGGWLPANQKGEICMR-GPKVTKGYWNAPEKTAEAFYGDW 374
Query: 118 FLSGDLGYFDSQ-------RCLNMW-----KISPTEVDA--------------------- 144
SGD+GY D + R +M ++ +EV+A
Sbjct: 375 LRSGDVGYLDEEGFLFVTDRTKDMILTGAENVASSEVEAALYELPQIAEAAVIGVHDDKW 434
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ C++ +ASFKVP+++ + L P +GK+ +R++
Sbjct: 435 GERITAVVVLNPGQTLTLEEIDRHCRQRLASFKVPRELKVVAELPRNP-SGKVLKRVL 491
>gi|91081621|ref|XP_966892.1| PREDICTED: similar to AMP dependent coa ligase [Tribolium
castaneum]
gi|270005089|gb|EFA01537.1| hypothetical protein TcasGA2_TC007097 [Tribolium castaneum]
Length = 575
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 65 SVGKPVRREMA----IPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWF 118
S+G+P+ + + D G N G++ ++ GP V + +N PE + AF GWF
Sbjct: 391 SIGRPIPNTLVKIINVDDPTGTPLGPNATGELLVK-GPQVMKGYLNRPEETENAFLDGWF 449
Query: 119 LSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKV 158
+GD+ Y++ + D +KE K V F+V
Sbjct: 450 RTGDMAYYNEDHVFFI-------TDRLKELIK--VKGFQV 480
>gi|441522662|ref|ZP_21004305.1| putative fatty-acid--CoA ligase [Gordonia sihwensis NBRC 108236]
gi|441457767|dbj|GAC62266.1| putative fatty-acid--CoA ligase [Gordonia sihwensis NBRC 108236]
Length = 535
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 59/179 (32%)
Query: 62 KASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAFQFGWFL 119
K +S G P V ++AI +G G++ R +++ NN +AN AF GWF
Sbjct: 355 KDASWGPPTVSTDIAIMGGDGTLLPTGREGEIVYRAPQLMEGYWNNRDANTEAFAHGWFH 414
Query: 120 SGDLGYFDSQ-------RCLNMWK-----ISPTEVDAV---------------------- 145
GD+GY D + R ++ K +S EV+ V
Sbjct: 415 GGDIGYLDDEAVVWFTDRAKDIIKSGGENVSSVEVERVLLGHESVAEVAVVGVPDEHWGE 474
Query: 146 ----------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ + + +A FK PK V + D+L K TGKIQ+ ++
Sbjct: 475 AVTAFVVLGEPADSGEARSEEIQSWARERLAGFKAPKSVVVVDALP-KTATGKIQKHLM 532
>gi|315445504|ref|YP_004078383.1| acyl-CoA synthetase [Mycobacterium gilvum Spyr1]
gi|315263807|gb|ADU00549.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Mycobacterium
gilvum Spyr1]
Length = 529
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 54 LLPKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP-MVQRINNPEANKT 111
L P + G+P V E AI D++ G++ R MV +++P+
Sbjct: 338 LGPDEQDRHGGAAGRPAVNVETAILDDSDNPVPPGTVGEIAHRSPHLMVGYLDDPQRTAE 397
Query: 112 AFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK---RNVASFKVPKKVFIADSL 168
AF+ WF SGDLGY+D L++ VD K+ K NVAS +V + ++ D +
Sbjct: 398 AFRGDWFHSGDLGYYDEFGLLHV-------VDRKKDMIKSGGENVASREVEEVLYQHDDV 450
Query: 169 SGKPLTG 175
+ G
Sbjct: 451 QEAAVFG 457
>gi|326366171|gb|ADZ54779.1| 4-coumarate-CoA ligase [Prunus avium]
Length = 604
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+S+C F P P K+ S G +R E+ + D E G N G++CIR +++
Sbjct: 403 LSMCLAFAKEPL--PSKSGSCGTVIRNAELKVIDSETGCSLGYNQPGEICIRGSQIMKGY 460
Query: 103 INNPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+ EA T + GW +GD+GY D + + VD VKE K F+VP
Sbjct: 461 LNDAEATATTVDKEGWLHTGDVGYVDDDEEVFI-------VDRVKELIK--FKGFQVP 509
>gi|148982248|ref|ZP_01816671.1| putative long-chain-fatty-acid-CoA ligase [Vibrionales bacterium
SWAT-3]
gi|145960582|gb|EDK25936.1| putative long-chain-fatty-acid-CoA ligase [Vibrionales bacterium
SWAT-3]
Length = 535
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 71/233 (30%)
Query: 6 LSIHGAAQLTITPYTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASS 65
L + G A + + V ++ R LP +G T+ ++ +G + S
Sbjct: 303 LGVSGGASMPL----EVIRQFESRFELPVLEGYGLSETAPVATFNHI-----DGDRLSGS 353
Query: 66 VGKPVRREM-AIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGD 122
VG+P+ + I D G G++CI+ P V + PEA A + GWFL+GD
Sbjct: 354 VGQPLCGHLIKITDVQGNSVAMGELGEVCIK-SPSVMKGYYQRPEATTEAIRDGWFLTGD 412
Query: 123 LGYFDSQ-------RCLNM-----WKISPTEVD--------------------------- 143
+G D R +M + + P E++
Sbjct: 413 IGRVDEHGNLFIVDRVKDMIIRGGYNVYPREIEEVLMCHPDVEMVAVVGEHHEQLGEEIH 472
Query: 144 --------------AVKEFCKRNVASFKVPKKVFIADSLSGKPL--TGKIQRR 180
A+ +C+ +A +K P+KVFI +L P+ TGKI +R
Sbjct: 473 AHVVLHEHTQCDSKALMAWCREQLADYKYPRKVFIRSAL---PMTATGKILKR 522
>gi|365902488|ref|ZP_09440311.1| acyl-CoA synthetase family protein [Lactobacillus malefermentans
KCTC 3548]
Length = 513
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGP 98
G +T S CT+ P + P K S GKP ++ + + + +V G++ +R
Sbjct: 308 GYGMTETASQCTIN---PLDAP-KVGSAGKPFATDLKLIVDGEMVDAPDVVGEIAVRGDH 363
Query: 99 MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
++ + E N +F WFL+GDLGY D L
Sbjct: 364 VIS--DYLETNPESFHNDWFLTGDLGYLDEDGYL 395
>gi|154245648|ref|YP_001416606.1| AMP-dependent synthetase and ligase [Xanthobacter autotrophicus
Py2]
gi|154159733|gb|ABS66949.1| AMP-dependent synthetase and ligase [Xanthobacter autotrophicus
Py2]
Length = 531
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQR 130
E+AI DE A G++ IR GP V + NPEA + AF+ G L+GD+G+ D +
Sbjct: 360 EIAIVDEAAAPLPAGATGEILIR-GPGVGKGYFRNPEATQAAFRAGGILTGDVGHLDPEG 418
Query: 131 CL 132
L
Sbjct: 419 YL 420
>gi|297204824|ref|ZP_06922221.1| O-succinylbenzoate-CoA ligase [Streptomyces sviceus ATCC 29083]
gi|197712539|gb|EDY56573.1| O-succinylbenzoate-CoA ligase [Streptomyces sviceus ATCC 29083]
Length = 490
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P GP +A +VG P +E+ I D G + V+G++ +R GP V R + P+
Sbjct: 299 PVAGPRRAGTVGLPFPGQEIRILDAEGSEVPPGVDGEVVVR-GPNVMRGYLGRPDETAKV 357
Query: 113 FQFGWFLSGDLGYFDSQRCLNM 134
GW +GD+G D+ L +
Sbjct: 358 LVDGWLHTGDVGRLDADGYLTL 379
>gi|125560726|gb|EAZ06174.1| hypothetical protein OsI_28410 [Oryza sativa Indica Group]
Length = 561
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 64/200 (32%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+S+C F P K+ + G VR E+ I D + G N+ G++CIR +++
Sbjct: 359 LSMCLAFAKEPFK--VKSGACGTVVRNAELKIIDPDTGKSLGRNLPGEICIRRQQIMKGY 416
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----- 144
+NNPEA K GW +GD+GY D + + ++++P E++A
Sbjct: 417 LNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITH 476
Query: 145 -------------------------------------VKEFCKRNVASFKVPKKVFIADS 167
VK+F + V +K ++VF D
Sbjct: 477 PSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDK 536
Query: 168 LSGKPLTGKIQRRIVAELRK 187
+ P +GKI R+ ELRK
Sbjct: 537 IPKAP-SGKILRK---ELRK 552
>gi|254481946|ref|ZP_05095188.1| AMP-binding enzyme, putative [marine gamma proteobacterium
HTCC2148]
gi|214037636|gb|EEB78301.1| AMP-binding enzyme, putative [marine gamma proteobacterium
HTCC2148]
Length = 537
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 65 SVGKPVRR-EMAIPDENGVDQKANVNGKMCIR----EGPMVQRINNPEANKTAFQFGWFL 119
++G+PV ++ + D++G + A G++CIR +NPE AF+ WFL
Sbjct: 339 ALGRPVADIDVKLCDDDGNEVTAGEPGEICIRPKKPHTIFSGYFDNPEGTAAAFRGDWFL 398
Query: 120 SGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKV 158
SGD+ D + +++ + + DAV+ F RN+++ +V
Sbjct: 399 SGDMARKDPE--TSIYFFTDRKKDAVR-FAGRNISTLEV 434
>gi|392409826|ref|YP_006446433.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Desulfomonile
tiedjei DSM 6799]
gi|390622962|gb|AFM24169.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Desulfomonile
tiedjei DSM 6799]
Length = 560
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 64/192 (33%)
Query: 55 LPKNGPHKASSVGKPVRREMA----IPDENGVDQKANVNGKMCIREGPMVQR--INNPEA 108
+P G K +G P+ A I D + N G++C++ GP V + +NNP+
Sbjct: 362 IPLGGKEKPGCIGLPLPSTEAKLVDIDDYSREITAFNEPGELCVK-GPQVMKGYLNNPKE 420
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAVK---------- 146
K + GW L+GD+ D + + + I P E+D V
Sbjct: 421 TKAVLKEGWLLTGDIAVMDEEGYFTIVDRKKDMIISGGFNIYPREIDEVLYTHPKILEAC 480
Query: 147 -------------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTG 175
EFC++ + +KVPK++ L K G
Sbjct: 481 AVGVSDSYSGERVKAFVVLKPGETATDKEIIEFCRQKMTRYKVPKEIEFVSDLP-KSAVG 539
Query: 176 KIQRRIVAELRK 187
KI R+ ELR+
Sbjct: 540 KILRK---ELRR 548
>gi|389629598|ref|XP_003712452.1| hypothetical protein MGG_04956 [Magnaporthe oryzae 70-15]
gi|351644784|gb|EHA52645.1| hypothetical protein MGG_04956 [Magnaporthe oryzae 70-15]
gi|440475989|gb|ELQ44635.1| long-chain-fatty-acid-CoA ligase 1 [Magnaporthe oryzae Y34]
gi|440487755|gb|ELQ67530.1| long-chain-fatty-acid-CoA ligase 1 [Magnaporthe oryzae P131]
Length = 700
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 74 MAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANKTAF-QFGWFLSGDLGYFDSQRC 131
++IPD N G++ IR GP+V+ NNPE AF + GWF +GD+G +D+
Sbjct: 492 VSIPDLNYSTDTKPPRGEVLIRGGPVVREYYNNPEETAKAFTEDGWFRTGDVGEWDADGN 551
Query: 132 LNMWKISPTEVDAVKEFCK 150
L + +D VK K
Sbjct: 552 LRI-------IDRVKNLVK 563
>gi|76177061|gb|ABA40922.1| 4-coumaroyl CoA ligase [Camellia sinensis]
Length = 588
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR E+ + D E G N +G++CIR GP + +
Sbjct: 367 LSMCLAFAKQPF--PTKSGSCGTVVRNAELKVIDPETGCSLGPNHSGEICIR-GPQIMKG 423
Query: 103 -INNPEANKTAFQF-GWFLSGDLGY 125
+N+ EA T GW +GD+GY
Sbjct: 424 YLNHAEATATTIDVDGWLHTGDIGY 448
>gi|392410413|ref|YP_006447020.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Desulfomonile
tiedjei DSM 6799]
gi|390623549|gb|AFM24756.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Desulfomonile
tiedjei DSM 6799]
Length = 501
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 17/105 (16%)
Query: 61 HKASSVGKPV-RREMAIPD-ENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFG 116
K++S GKPV ++ I D ++GV G++ + GPMV + +NPEA + AF G
Sbjct: 321 EKSNSQGKPVFHGDLKIVDPQSGVPLPTGEVGEILCK-GPMVFKEYWDNPEATRAAFVDG 379
Query: 117 WFLSGDLGYFDSQ-------RCLNMW-----KISPTEVDAVKEFC 149
W+ SGDLG D++ R +M I P E++AV C
Sbjct: 380 WYRSGDLGRVDTEGFFYVVDRLKDMIISGGENIYPAELEAVICMC 424
>gi|168830130|gb|ACA34358.1| acyl-CoA ligase [Paenibacillus polymyxa]
Length = 470
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 73 EMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAFQFGWFLSGDLGYFDS 128
++ I D G Q + G++ IR G M +N P+ ++ Q GWF +GDLGY D
Sbjct: 300 DLKILDSTGNQQADGIVGEVWIRSAGCMEGYLNRPDLTQSVLQDGWFKTGDLGYLDD 356
>gi|434385395|ref|YP_007096006.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Chamaesiphon
minutus PCC 6605]
gi|428016385|gb|AFY92479.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Chamaesiphon
minutus PCC 6605]
Length = 496
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 58 NGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQF 115
+G A SVG P+ + E+ + DENG G++ ++ +G ++ NP A AFQ
Sbjct: 311 HGQRTAGSVGTPLPQVEVRLVDENGELVPPGTPGEIQVKSQGVFLEYWQNPAATAKAFQS 370
Query: 116 GWFLSGDLGYFD 127
GWF +GDL +
Sbjct: 371 GWFCTGDLAVVE 382
>gi|373855403|ref|ZP_09598149.1| AMP-dependent synthetase and ligase [Bacillus sp. 1NLA3E]
gi|372454472|gb|EHP27937.1| AMP-dependent synthetase and ligase [Bacillus sp. 1NLA3E]
Length = 517
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 18/108 (16%)
Query: 56 PKNGPHKASSVGKP-VRREMAIPDENGVDQKANVNGKMCIREGP----MVQRINNPEANK 110
P NG S+GKP + E I DE G + N+ G++ I+ P M + ++PEA
Sbjct: 332 PPNGERNWPSIGKPGLSYEAKIIDEEGNELPPNMIGEIYIKGIPGRTLMKEYYHDPEATA 391
Query: 111 TAFQ-FGWFLSGDLGYFDS-------QRCLNMWK-----ISPTEVDAV 145
A + GW +GD GY D R +NM K IS TE++ +
Sbjct: 392 KALKPGGWLYTGDKGYVDESGWFYFVDRKVNMIKRAGENISTTEIENI 439
>gi|199584523|gb|ACH90386.1| atromentin synthetase [Tapinella panuoides]
Length = 957
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVN-GKMCI 94
FG T A + V L + H+ ++G PV EM I D E+G +++ G++ +
Sbjct: 354 FGMTETCAGCIYDVVDLAENSPKHEFLALGAPVHGCEMRIVDPEDGATPRSDGQPGELQV 413
Query: 95 REGPM--VQRINNPEANKTAF-QFGWFLSGDLGYFDS 128
R GPM V+ NNPEA K++F + GW+ +GD+G ++
Sbjct: 414 R-GPMIFVRYYNNPEATKSSFVEGGWYRTGDIGIIEN 449
>gi|119387543|ref|YP_918577.1| acyl-CoA synthetase [Paracoccus denitrificans PD1222]
gi|119378118|gb|ABL72881.1| AMP-dependent synthetase and ligase [Paracoccus denitrificans
PD1222]
Length = 533
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFDS 128
E+ I D+ G + G++C+ GP V NP+AN AF+ GWF +GDLG+ D
Sbjct: 358 EIQIQDDQGRELPPGQTGEICVI-GPAVFAGYYRNPQANAKAFRDGWFRTGDLGHMDE 414
>gi|297196379|ref|ZP_06913777.1| acyl-CoA synthetase [Streptomyces pristinaespiralis ATCC 25486]
gi|197720854|gb|EDY64762.1| acyl-CoA synthetase [Streptomyces pristinaespiralis ATCC 25486]
Length = 499
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE 96
+ CF S I VL P + S G+PV E + DE+G + G++ R
Sbjct: 298 YNCFGQSEIGPLAT-VLRPDEHEGRMESCGRPVLFVEAKVVDEDGKEVADGTAGEVVYRS 356
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
+ + + PE + AF+ GWF SGDL D + T VD VK+
Sbjct: 357 PQLCEGYWDKPEETQEAFRGGWFHSGDLAVRDGEGYF-------TVVDRVKDVINSGGVL 409
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
VAS +V ++ +++ + G R +
Sbjct: 410 VASRQVEDALYTHPAVAEAAVIGLPDERWI 439
>gi|169829504|ref|YP_001699662.1| long-chain-fatty-acid--CoA ligase [Lysinibacillus sphaericus C3-41]
gi|168993992|gb|ACA41532.1| Long-chain-fatty-acid--CoA ligase [Lysinibacillus sphaericus C3-41]
Length = 575
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 75/207 (36%), Gaps = 64/207 (30%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVN--GKMCIR 95
+G TS ++ T P G S+G P A+ G ++ V G++ ++
Sbjct: 367 YGLTETSPVTHAT-----PIWGKRVIGSIGLPWPNTEAVILRTGDTEELPVGEVGEIAVK 421
Query: 96 EGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTE 141
GP V + N PE F WFL+GDLGY D Q + + I P E
Sbjct: 422 -GPQVMKGYWNRPEDTAATFADDWFLTGDLGYMDEQGFFYVVDRKKDLIIAGGFNIYPRE 480
Query: 142 V-----------------------------------------DAVKEFCKRNVASFKVPK 160
V D + ++C++++A+FKVP+
Sbjct: 481 VEEVLYEREEIQECVVAGIPDPYRGETVKAYIVLKEGYSITEDELNKYCRQHLAAFKVPR 540
Query: 161 KVFIADSLSGKPLTGKIQRRIVAELRK 187
L K GKI RR + E K
Sbjct: 541 YYEFKQELP-KTAVGKILRRTLVEEEK 566
>gi|407800909|ref|ZP_11147755.1| acyl-CoA synthase [Oceaniovalibus guishaninsula JLT2003]
gi|407057247|gb|EKE43237.1| acyl-CoA synthase [Oceaniovalibus guishaninsula JLT2003]
Length = 517
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 38 FGCFVTS-AISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIR 95
+G TS ++V T P +G K +VG P+ ++ I DE+ D G++ R
Sbjct: 311 YGMTETSPVVTVLTSDHHAPDSG--KLDTVGLPMPHADLRIVDEDDRDLPTGATGQILTR 368
Query: 96 EGP--MVQRINNPEANKTAFQFGWFLSGDLGYFDSQRCLNM 134
GP M N PEA A + GW+ +GD G+ D+ L++
Sbjct: 369 -GPHVMCGYWNQPEATAKALRGGWYHTGDAGWLDTDGFLHI 408
>gi|118566977|gb|ABL01799.1| 4-coumarate:CoA ligase [Leucaena leucocephala]
Length = 409
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR 95
+G A+S+ F P K+ + G +R EM I D E G N G++CIR
Sbjct: 304 YGMTEGGALSISLSFAKEPVE--MKSGACGSVIRNAEMKIVDIETGASLPRNRAGEICIR 361
Query: 96 EGPMVQ-RINNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+++ +N+ EA KT + GW SGD+GY D
Sbjct: 362 GNQVMKGYLNDSEATKTTIDEEGWLHSGDIGYIDDDE 398
>gi|424911273|ref|ZP_18334650.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|392847304|gb|EJA99826.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Rhizobium
leguminosarum bv. viciae USDA 2370]
Length = 546
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 57/167 (34%)
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMV--QRINNPEANKTAFQFGWFLSGDLGYFD--- 127
E+ I ++ G + +A G++C+ GP V +NP+AN AF+ GWF +GDLG+ D
Sbjct: 365 EVQIQNDAGEEVEAGETGEICVI-GPAVFAGYYDNPDANAKAFRNGWFRTGDLGHRDENG 423
Query: 128 ----SQRCLNMW-----KISPTEV-------------------DAV-------------- 145
+ R +M+ I P E+ DAV
Sbjct: 424 FVYITGRASDMYISGGSNIYPREIEEKILMHPDISEAAVLGVPDAVWGEVGVAVCVAREG 483
Query: 146 --------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
K + + +A +K+PK V D++ K GKI ++++ E
Sbjct: 484 ADITGIDLKAYLEGKMARYKLPKTVVFWDAMP-KSAYGKITKKMIRE 529
>gi|418595333|ref|ZP_13158951.1| acetyl-coenzyme A synthetase [Staphylococcus aureus subsp. aureus
21342]
gi|374401860|gb|EHQ72912.1| acetyl-coenzyme A synthetase [Staphylococcus aureus subsp. aureus
21342]
Length = 568
Score = 44.7 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 62 KASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREG--PMVQRI-NNPEANKTAFQFGW 117
K SS+GKP+ + AI D+ G + N G + I++G M+ RI NPE K+ F W
Sbjct: 373 KLSSMGKPLPGIQAAIIDDAGNELPPNRMGDLAIKKGWPSMMYRIWKNPEKYKSYFIGDW 432
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIADSLS-----GK- 171
++SGD Y D W VD V V F+V K+ ++++ GK
Sbjct: 433 YVSGDSAYKDEDGYF--W--FQGRVDDVIMTAGERVGPFEVESKLVEHEAVAEAGIIGKP 488
Query: 172 -PLTGKIQRRIVAELRK 187
P+ G+I + VA LRK
Sbjct: 489 DPVRGEIIKAFVA-LRK 504
>gi|311069576|ref|YP_003974499.1| O-succinylbenzoic acid--CoA ligase [Bacillus atrophaeus 1942]
gi|419819763|ref|ZP_14343383.1| O-succinylbenzoic acid--CoA ligase [Bacillus atrophaeus C89]
gi|310870093|gb|ADP33568.1| O-succinylbenzoic acid--CoA ligase [Bacillus atrophaeus 1942]
gi|388476116|gb|EIM12819.1| O-succinylbenzoic acid--CoA ligase [Bacillus atrophaeus C89]
Length = 486
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 54/171 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEA 108
+ L P+ K S GKP+ +++G + +G++ ++ GP V + N
Sbjct: 295 IVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGETCEPLEHGEIMVK-GPNVMKSYFNRESV 353
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEV-------------- 142
N+ +F GWF +GDLGY D + L + I P EV
Sbjct: 354 NEASFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIYPAEVESALLAHPSVAEAG 413
Query: 143 -------------------------DAVKEFCKRNVASFKVPKKVFIADSL 168
+A+ FC+ +A +K+P K F+ D L
Sbjct: 414 VSGAEDPKWGKVPHAYLVLRNPVSAEALASFCRERLAKYKIPAKFFVLDQL 464
>gi|444379507|ref|ZP_21178686.1| Long-chain-fatty-acid--CoA ligase [Enterovibrio sp. AK16]
gi|443676381|gb|ELT83083.1| Long-chain-fatty-acid--CoA ligase [Enterovibrio sp. AK16]
Length = 516
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 65 SVGKPVRREM-AIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSG 121
SVG+P+ M I D G G++CI+ P V + N PEA + F GWF SG
Sbjct: 336 SVGQPLCGHMIKIIDLAGNSVPTGERGEVCIK-SPSVMKGYYNRPEATEETFVDGWFKSG 394
Query: 122 DLGYFDSQRCLNMWKISPTEVDAVKEFCKR---NVASFKVPKKVFIADSLSGKPLTGKIQ 178
D+GY D + C N++ VD VK+ R NV ++ + + ++ + G+
Sbjct: 395 DIGYLD-EHC-NLFI-----VDRVKDMILRGGYNVYPREIEEVMMCHPAIEMVAVVGEPH 447
Query: 179 RRIVAELR 186
R+ E+
Sbjct: 448 ERLGEEIH 455
>gi|152990284|ref|YP_001356006.1| acyl-CoA synthetase [Nitratiruptor sp. SB155-2]
gi|151422145|dbj|BAF69649.1| long-chain fatty-acid-CoA ligase [Nitratiruptor sp. SB155-2]
Length = 517
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 56/195 (28%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQRI 103
+S C+ V + K SVG + E+ I DE+ V+ G++ ++ ++Q
Sbjct: 317 GLSECSPVVAVNLPNKQKPKSVGPALPGVEVKIVDEDMVELSRGEVGEIIVKGDNVMQGY 376
Query: 104 -NNPEANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV----- 145
PEA GW +GDLGY D + + + I P E++ V
Sbjct: 377 WKRPEATAETIVNGWLKTGDLGYMDDEGFIYIVDRKKDLIISKGINIYPREIEEVLMNNP 436
Query: 146 ------------------------------------KEFCKRNVASFKVPKKVFIADSLS 169
K + K ++A+FKVP+ V+I D L
Sbjct: 437 HIKAAAVIGIKDEKSGEVPVAYVELEDGEKISENEIKRYLKEHLANFKVPRSVYIVDELP 496
Query: 170 GKPLTGKIQRRIVAE 184
K TGK+ +R++ E
Sbjct: 497 -KNATGKVLKRVLKE 510
>gi|33591821|ref|NP_879465.1| acyl-CoA synthetase [Bordetella pertussis Tohama I]
gi|384203124|ref|YP_005588863.1| acyl-CoA synthetase [Bordetella pertussis CS]
gi|33571464|emb|CAE44950.1| putative substrate-CoA ligase [Bordetella pertussis Tohama I]
gi|332381238|gb|AEE66085.1| acyl-CoA synthetase [Bordetella pertussis CS]
Length = 497
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 58/178 (32%)
Query: 61 HKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGW 117
K S G+ + E+ I D G AN G++C+R GP V + N PE AF W
Sbjct: 316 EKIGSTGRALPHVEIRIADGAGGWLPANRKGEICMR-GPKVTKGYWNAPEKTAEAFYGDW 374
Query: 118 FLSGDLGYFDSQ-------RCLNMW-----KISPTEVDA--------------------- 144
SGD+GY D + R +M ++ +EV+A
Sbjct: 375 LRSGDVGYLDEEGFLFVTDRTKDMILTGAENVASSEVEAALYELPQIAEAAVIGVHDDKW 434
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
+ C++ +ASFKVP+++ + L P +GK+ +R++
Sbjct: 435 GERITAVVVLNPGQTLTLEEIDRHCRQRLASFKVPRELKVVAELPRNP-SGKVLKRVL 491
>gi|260906952|ref|ZP_05915274.1| O-succinylbenzoate-CoA ligase [Brevibacterium linens BL2]
Length = 380
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 58 NGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQ 114
N KA S G+ V E+ + D G D +A V G++ +R GP V NN A AF
Sbjct: 156 NALDKAGSAGRAVPFTEVRVRDLAGNDCEAGVKGEIVVR-GPNVTSGYWNNQAATDAAFS 214
Query: 115 -FGWFLSGDLGYFDSQRCL 132
GWF +GD+GY D++ L
Sbjct: 215 PGGWFHTGDIGYLDAEGFL 233
>gi|195489640|ref|XP_002092821.1| GE11456 [Drosophila yakuba]
gi|194178922|gb|EDW92533.1| GE11456 [Drosophila yakuba]
Length = 537
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 16 ITPYTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKAS-SVGK--PVRR 72
I + ++ L + + LP + T+ V T+ N H SVG+ P R
Sbjct: 308 IGGWISLALLRRAQELLPKTYVMFSYGTTETGVVTI------NVDHGLECSVGRLAPGMR 361
Query: 73 EMAIPDENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAFQFGWFLSGDLGYFDSQRC 131
+ I DENG N G++ I G + ++NPE T Q GW GDLGYFD
Sbjct: 362 -IKIQDENGQQLGVNQTGEVLIDIGLKWEGYLSNPEDTATTLQNGWINLGDLGYFDEDNN 420
Query: 132 LNM 134
L +
Sbjct: 421 LYL 423
>gi|352101855|ref|ZP_08959002.1| acyl-CoA synthetase [Halomonas sp. HAL1]
gi|350600309|gb|EHA16377.1| acyl-CoA synthetase [Halomonas sp. HAL1]
Length = 509
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 60/213 (28%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKAN 87
RV+ R G +T + S T+ + P K S G+ + E+ I DE G N
Sbjct: 286 RVFTSARYIDGYGLTESCSGDTL--MPPGMEIEKIGSTGRALAHVEIRICDEQGHPLPPN 343
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFD------------------ 127
+G++C+ GP V R N+P +F WF +GD+G+ D
Sbjct: 344 TDGEICLC-GPKVTRGYWNDPVKTAESFFGEWFRTGDIGHLDGDGFLFVTDRRKDMILTG 402
Query: 128 -----SQRCLNMWKISPTEVDA------------------------------VKEFCKRN 152
S N+ + P +A +++ C+ +
Sbjct: 403 AENVASSEVENVIYLLPQVAEAAVVGLPDEQWGERLVAVVVLREGKTLSYSQLEQHCRGH 462
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
+A+FKVPK++ I++ L P +GKI +R + E+
Sbjct: 463 LANFKVPKQLLISEGLPRNP-SGKILKRELREM 494
>gi|406910414|gb|EKD50442.1| hypothetical protein ACD_62C00542G0002 [uncultured bacterium]
Length = 595
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPH--KASSVGKPVRREMAIPDENGVDQKANVNGKMCIR 95
FG + + L N H K +VG+P+ E+ V K +G++C+R
Sbjct: 362 FGFTILEGYGLTETTAGLSFNRSHFIKFGTVGQPI--------EDAVAVKIAGDGEICVR 413
Query: 96 EGPMVQR--INNPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN 152
G +V + NNP+A + A + GWF +GD+G FD+ L KI+ + D + +N
Sbjct: 414 -GKIVFKGYFNNPQATREAIDEEGWFHTGDIGEFDTDGFL---KITDRKKDIIVTAGGKN 469
Query: 153 VA 154
+A
Sbjct: 470 IA 471
>gi|90411458|ref|ZP_01219469.1| putative long-chain-fatty-acid-CoA ligase [Photobacterium profundum
3TCK]
gi|90327671|gb|EAS44014.1| putative long-chain-fatty-acid-CoA ligase [Photobacterium profundum
3TCK]
Length = 515
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 6 LSIHGAAQLTITPYTNVFLFYKGRVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASS 65
L+I G A L T V ++ + +P +G TS I+ + S
Sbjct: 285 LAISGGASLP----TEVIHTFESKFDVPILEGYGLSETSPIACFNHL-----DAERIPGS 335
Query: 66 VGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAFQFGWFLSGDL 123
VG+PV+ E+ + D G K G++ IR M +N P+A + + GWF +GD+
Sbjct: 336 VGQPVQGVEIQLMDLQGNKAKQGDTGEVVIRGHNVMKGYLNRPDATEASIVNGWFYTGDI 395
Query: 124 GYFDSQRCLNMWKISPTEVDAVKEFCKR 151
G FD + L + VD VK+ R
Sbjct: 396 GKFDEEGNLFI-------VDRVKDLIIR 416
>gi|58262454|ref|XP_568637.1| AMP binding protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134118940|ref|XP_771973.1| hypothetical protein CNBN1530 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254577|gb|EAL17326.1| hypothetical protein CNBN1530 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230811|gb|AAW47120.1| AMP binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 577
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 39 GCFVTSAISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIRE 96
G +T V V L H ++G+ P + + ENG D + G++ ++
Sbjct: 351 GYGLTETTPVSHVMTL--DESRHHPGAIGRVIPTYQARLVDAENGKDVEIGERGELWLK- 407
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVA 154
GP V + N EA + F+ GWF +GD+ D ++ + VD VKE K
Sbjct: 408 GPSVMKGYWRNEEATRNVFEDGWFKTGDIAIVDDRKYFTI-------VDRVKELIKYK-- 458
Query: 155 SFKVP 159
F+VP
Sbjct: 459 GFQVP 463
>gi|422657167|ref|ZP_16719610.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331015737|gb|EGH95793.1| long-chain-fatty-acid--CoA ligase [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 562
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 61/187 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTA 112
P + +VG PV M + ++ GV+ G++CI+ GP V + N P+A A
Sbjct: 378 PYGTQARLGTVGIPVPGTAMKVINDEGVELAFGERGELCIK-GPQVMKGYWNRPDATAEA 436
Query: 113 FQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV-------------- 145
GWF +GD+ + +++ + + P E++ V
Sbjct: 437 LDAEGWFKTGDIAVIAADGFVSIVDRKKDLIIVSGFNVYPNEIEDVIMTHPKVSNCACIG 496
Query: 146 --------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQR 179
K FCK N ++KVPK + + DSL P+ GKI R
Sbjct: 497 VPDERSGEAVKLFVVPRDPSVSVEELKAFCKENFTAYKVPKLIVLRDSLPMTPV-GKILR 555
Query: 180 RIVAELR 186
R ELR
Sbjct: 556 R---ELR 559
>gi|257054919|ref|YP_003132751.1| acyl-CoA synthetase [Saccharomonospora viridis DSM 43017]
gi|256584791|gb|ACU95924.1| acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
[Saccharomonospora viridis DSM 43017]
Length = 516
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 29 RVYLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKAN 87
R LP + CF S I+ VL P+ + S GKP E+ + D +G D
Sbjct: 296 REALPQLGFYNCFGQSEIAPLAT-VLRPEEHDERPDSAGKPALFVELRVVDPDGNDVAPG 354
Query: 88 VNGKMCIREGPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQ 129
G++ R + N PE AF+ GWF SGDL D +
Sbjct: 355 EQGEVVYRSPQLATGYWNKPEETAEAFRDGWFHSGDLVRIDDE 397
>gi|302530461|ref|ZP_07282803.1| dicarboxylate-CoA ligase PimA [Streptomyces sp. AA4]
gi|302439356|gb|EFL11172.1| dicarboxylate-CoA ligase PimA [Streptomyces sp. AA4]
Length = 511
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 56/180 (31%)
Query: 63 ASSVGKPVR-REMAIPDENGVDQKANVNGKMCIRE-GPMVQRINNPEANKTAFQFGWFLS 120
A +G+P R RE+ I +G G++ IR G M +PEA AF GWF +
Sbjct: 320 AGCIGRPTRDREVMIAGPDGKPLPRGETGELLIRGIGLMHGYHEDPEATARAFAGGWFHT 379
Query: 121 GDLGYFDSQ-------RCLNMWK-----ISPTEV-------------------------- 142
GDL D++ R +M + IS EV
Sbjct: 380 GDLARMDAEGRVYYLGRTKDMIRRSGENISADEVERALLQHPKVRLAAVLAVPDDLRGEE 439
Query: 143 --------------DAVKEFCKRNVASFKVPKKVFIADSLSGKP--LTGKIQRRIVAELR 186
+ + EFC + +A FKVP+ AD L P K + R VA+LR
Sbjct: 440 VKAYVVCGEDRPSPEELAEFCAQQLAYFKVPRFWTFADDLPRTPSERVAKGELRKVADLR 499
>gi|40253228|dbj|BAD05189.1| putative 4-coumarate--CoA ligase 1 [Oryza sativa Japonica Group]
Length = 561
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 64/200 (32%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+S+C F P K+ + G VR E+ I D + G N+ G++CIR + M
Sbjct: 359 LSMCLAFAKEPFK--VKSGACGTVVRNAELKIIDPDTGKSLGRNLPGEICIRGQQIMKGY 416
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----- 144
+NNPEA K GW +GD+GY D + + ++++P E++A
Sbjct: 417 LNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITH 476
Query: 145 -------------------------------------VKEFCKRNVASFKVPKKVFIADS 167
VK+F + V +K ++VF D
Sbjct: 477 PSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDK 536
Query: 168 LSGKPLTGKIQRRIVAELRK 187
+ P +GKI R+ ELRK
Sbjct: 537 IPKAP-SGKILRK---ELRK 552
>gi|407780852|ref|ZP_11128073.1| AMP-dependent synthetase and ligase [Oceanibaculum indicum P24]
gi|407209079|gb|EKE78986.1| AMP-dependent synthetase and ligase [Oceanibaculum indicum P24]
Length = 555
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 69/181 (38%), Gaps = 58/181 (32%)
Query: 50 TVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPE 107
T+FV L + S GKP RE + DE+G D G++ +R +G M PE
Sbjct: 346 TLFVPLEATEMVGSGSCGKPTAFRECRVVDEDGKDVPQGEIGELVVRGKGLMQGYYKKPE 405
Query: 108 ANKTAFQFGWFLSGDLGYFDSQ-------RCLNMWK-----ISPTEVDAVK--------- 146
AN+ ++ WF +GDL D Q R +M + I+ EV+AV
Sbjct: 406 ANRDSYFGEWFRTGDLFRKDEQGYHYIVGRLKDMVRRAGENIAAREVEAVLKNLPEVMDA 465
Query: 147 -----------------------------------EFCKRNVASFKVPKKVFIADSLSGK 171
E C RN+A+FKVP+ + D+L
Sbjct: 466 AVVAVPDDTRGQEVKAYIVRQPDLPEDALPLARIFEHCDRNLAAFKVPRYIEFIDTLPRT 525
Query: 172 P 172
P
Sbjct: 526 P 526
>gi|448748416|ref|ZP_21730048.1| AMP-dependent synthetase/ligase [Halomonas titanicae BH1]
gi|445564001|gb|ELY20134.1| AMP-dependent synthetase/ligase [Halomonas titanicae BH1]
Length = 517
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIRE 96
+ C+ S I+ VL P+ + +S G+P+ E I D + D +G++ R
Sbjct: 314 YNCYGQSEIAPLAT-VLRPEEHAERPASAGRPILTVETRIVDLDMNDVPPGEHGEIVHRS 372
Query: 97 GPMVQRI-NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRN--- 152
++ + P + AFQ WF SGD+GYFD L + VD +K+
Sbjct: 373 PQLMNGYWDKPVMTEEAFQGDWFHSGDVGYFDEAGYLYV-------VDRIKDVINTGGVL 425
Query: 153 VASFKVPKKVFIADSLSGKPLTGK 176
VAS +V + +F ++S + G+
Sbjct: 426 VASREVEEGLFKHPAVSEVAVIGQ 449
>gi|354543500|emb|CCE40219.1| hypothetical protein CPAR2_102570 [Candida parapsilosis]
Length = 719
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 90 GKMCIREGPMV--QRINNPEANKTAF-QFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVK 146
G++ +R GP + + NPEA +F + GWF SGD+ DS+R M+ I D VK
Sbjct: 514 GELLLR-GPQIFKEYYKNPEATAESFDKDGWFCSGDVARIDSRRNNQMYVI-----DRVK 567
Query: 147 EFCKRNVASFKVPKKVFIA 165
F K F P+K+ +A
Sbjct: 568 NFFKLAQGEFVTPEKIELA 586
>gi|115475513|ref|NP_001061353.1| Os08g0245200 [Oryza sativa Japonica Group]
gi|76789646|sp|P17814.2|4CL1_ORYSJ RecName: Full=Probable 4-coumarate--CoA ligase 1; Short=4CL 1;
Short=Os4CL1; AltName: Full=4-coumaroyl-CoA synthase 1
gi|113623322|dbj|BAF23267.1| Os08g0245200 [Oryza sativa Japonica Group]
gi|215697691|dbj|BAG91685.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 564
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 64/200 (32%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+S+C F P K+ + G VR E+ I D + G N+ G++CIR + M
Sbjct: 362 LSMCLAFAKEPFK--VKSGACGTVVRNAELKIIDPDTGKSLGRNLPGEICIRGQQIMKGY 419
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----- 144
+NNPEA K GW +GD+GY D + + ++++P E++A
Sbjct: 420 LNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITH 479
Query: 145 -------------------------------------VKEFCKRNVASFKVPKKVFIADS 167
VK+F + V +K ++VF D
Sbjct: 480 PSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDK 539
Query: 168 LSGKPLTGKIQRRIVAELRK 187
+ P +GKI R+ ELRK
Sbjct: 540 IPKAP-SGKILRK---ELRK 555
>gi|441521598|ref|ZP_21003257.1| putative fatty-acid--CoA ligase [Gordonia sihwensis NBRC 108236]
gi|441458821|dbj|GAC61218.1| putative fatty-acid--CoA ligase [Gordonia sihwensis NBRC 108236]
Length = 504
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 50 TVFVLLPKNGPHKAS-----SVGKPVRR-EMAIPDENGVDQKANVNGKMCIR-EGPMVQR 102
T+ V+ P PH ++ S G+P E+ + +++G D A G++ +R + M
Sbjct: 304 TIAVMKPDEVPHDSADPRRRSCGQPFTGVEVRVVNDDGADSPAGTTGEIQVRGDVVMAGY 363
Query: 103 INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM 134
++P A A GW +GD+G+FD L +
Sbjct: 364 WSDPNATAAAISDGWLRTGDVGHFDENGFLYL 395
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,917,607,779
Number of Sequences: 23463169
Number of extensions: 114425954
Number of successful extensions: 222902
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 3646
Number of HSP's that attempted gapping in prelim test: 220411
Number of HSP's gapped (non-prelim): 5839
length of query: 187
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 53
effective length of database: 9,215,130,721
effective search space: 488401928213
effective search space used: 488401928213
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)