BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046701
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 326 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATR 384
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 385 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 444
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 445 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 503
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 504 KTVLRE 509
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 346 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 404
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 405 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 462
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCL 132
AF GWF +GD+G D + L
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYL 392
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++ +R GPM+
Sbjct: 346 GLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVR-GPMIMS 404
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQR 130
+NNPEA N + GW SGD+ Y+D
Sbjct: 405 GYVNNPEATNALIDKDGWLHSGDIAYWDEDE 435
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 50 TVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INN 105
+ ++ P+ K + GK P + + G N G++C++ GPM+ + +NN
Sbjct: 381 SAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVK-GPMIMKGYVNN 439
Query: 106 PEANKTAF-QFGWFLSGDLGYFD 127
PEA + GW SGD+ Y+D
Sbjct: 440 PEATSALIDKDGWLHSGDIAYYD 462
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 38 FGCFVTSAISVCTVFVLLPKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIRE 96
FG TS +S + PK S G+P+ R +A+ D G++ +R
Sbjct: 302 FGQSETSGLSTFAPYRDRPK-------SAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLR- 353
Query: 97 GPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
GP V + NN A + AF+ GW +GD+G FD+ L
Sbjct: 354 GPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYL 391
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 63/195 (32%)
Query: 50 TVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGK-----MCIREGPMVQRIN 104
++++ PK G A VR + GVD+ NG+ + + V +N
Sbjct: 312 SLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIV-ANGEEGELIVAASDSAFVGYLN 367
Query: 105 NPEANKTAFQFGWFLSGD------------LGYFDSQRCLNMWKISPTEV---------- 142
PEA Q GW+ + D LG D I P+E+
Sbjct: 368 QPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGV 427
Query: 143 -------------------------------DAVKEFCKRN-VASFKVPKKVFIADSLSG 170
DA+ FC+ + +A FK PK+ FI D L
Sbjct: 428 TEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPK 487
Query: 171 KPLTGKIQRRIVAEL 185
L ++R++V ++
Sbjct: 488 NALNKVLRRQLVQQV 502
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 34 PRLEF-GCF----VTSAISVCTVFVL---LPKNGPHKASSVGKPVRREMAIPDENGVDQK 85
PRL G F S I V +F L K PH++ VG+ V + DE G +
Sbjct: 309 PRLHMTGTFDLKKTLSYIGVSKIFEEHGDLTKIAPHRSLKVGEAVHKAELKMDERGTEGA 368
Query: 86 ANVNGKMCIREGPMVQRINNP 106
A + E P+V +I+ P
Sbjct: 369 AGTGAQTLPMETPLVVKIDKP 389
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 75/214 (35%), Gaps = 65/214 (30%)
Query: 31 YLPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNG 90
+LP G T A++ ++++ PK G A VR + GVD+ NG
Sbjct: 295 HLPGEKVNGYGTTEAMN--SLYMRQPKTGTEMAPGFFSEVR---IVRIGGGVDEIV-ANG 348
Query: 91 K-----MCIREGPMVQRINNPEANKTAFQFGWFLSGD------------LGYFDSQRCLN 133
+ + + V +N P+A Q GW+ + D LG D
Sbjct: 349 EEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISG 408
Query: 134 MWKISPTEV-----------------------------------------DAVKEFCKRN 152
I P+E+ DA+ FC+ +
Sbjct: 409 GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468
Query: 153 -VASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
+A FK PK+ FI D L L ++R++V ++
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 143 DAVKEFCKRN-VASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
DA+ FC+ + +A FK PK+ FI D L L ++R++V ++
Sbjct: 459 DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 143 DAVKEFCKRN-VASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
DA+ FC+ + +A FK PK+ FI D L L ++R++V ++
Sbjct: 459 DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 143 DAVKEFCKRN-VASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
DA+ FC+ + +A FK PK+ FI D L L ++R++V ++
Sbjct: 459 DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 143 DAVKEFCKRN-VASFKVPKKVFIADSLSGKPLTGKIQRRIVAEL 185
DA+ FC+ + +A FK PK+ FI D L L ++R++V ++
Sbjct: 459 DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFL 119
P KA +G VR+E A E +Q K R G VQ I+ PEA A W +
Sbjct: 218 PAKAPRIGV-VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEA----WRI 272
Query: 120 SGDLGYFDSQRCLNMWKIS 138
+ F++ R L W+ S
Sbjct: 273 HPIIQDFEAHRAL-AWEFS 290
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFL 119
P KA +G VR+E A E +Q K R G VQ I+ PEA A W +
Sbjct: 218 PAKAPRIGV-VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEA----WRI 272
Query: 120 SGDLGYFDSQRCLNMWKIS 138
+ F++ R L W+ S
Sbjct: 273 HPIIQDFEAHRAL-AWEFS 290
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFL 119
P KA +G VR+E A E +Q K R G VQ I+ PEA A W +
Sbjct: 218 PAKAPRIGV-VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEA----WRI 272
Query: 120 SGDLGYFDSQRCLNMWKIS 138
+ F++ R L W+ S
Sbjct: 273 HPIIQDFEAHRAL-AWEFS 290
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFL 119
P KA +G VR+E A E +Q K R G VQ I+ PEA A W +
Sbjct: 218 PAKAPRIGV-VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEA----WRI 272
Query: 120 SGDLGYFDSQRCLNMWKIS 138
+ F++ R L W+ S
Sbjct: 273 HPIIQDFEAHRAL-AWEFS 290
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFL 119
P KA +G VR+E A E +Q K R G VQ I+ PEA A W +
Sbjct: 218 PAKAPRIGV-VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEA----WRI 272
Query: 120 SGDLGYFDSQRCLNMWKIS 138
+ F++ R L W+ S
Sbjct: 273 HPIIQDFEAHRAL-AWEFS 290
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFL 119
P KA +G VR+E A E +Q K R G VQ I+ PEA A W +
Sbjct: 218 PAKAPRIGV-VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEA----WRI 272
Query: 120 SGDLGYFDSQRCLNMWKIS 138
+ F++ R L W+ S
Sbjct: 273 HPIIQDFEAHRAL-AWEFS 290
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFL 119
P KA +G VR+E A E +Q K R G VQ I+ PEA A W +
Sbjct: 218 PAKAPRIGV-VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEA----WRI 272
Query: 120 SGDLGYFDSQRCLNMWKIS 138
+ F++ R L W+ S
Sbjct: 273 HPIIQDFEAHRAL-AWEFS 290
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 60 PHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQRINNPEANKTAFQFGWFL 119
P KA +G VR+E A E +Q K R G VQ I+ PEA A W +
Sbjct: 218 PAKAPRIGV-VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEA----WRI 272
Query: 120 SGDLGYFDSQRCLNMWKIS 138
+ F++ R L W+ S
Sbjct: 273 HPIIQDFEAHRAL-AWEFS 290
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 35 RLEFGCFVTSA---ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVN 89
RL G +T A +++C F P + K + G VR EM I D E G N
Sbjct: 325 RLGQGYGMTEAGPVLAMCLAFAKEPFD--IKPGACGTVVRNAEMKIVDPETGASLPRNQP 382
Query: 90 GKMCIREGPMVQ-RINNPEA-NKTAFQFGWFLSG---------DLGYFDSQRCLNMWK-- 136
G++CIR +++ +N+PEA ++T + GW +G +L D + L +K
Sbjct: 383 GEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGF 442
Query: 137 -ISPTEVDAV 145
++P E++A+
Sbjct: 443 QVAPAELEAL 452
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 136 KISPTEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
K S D VK+F + V +K KVF +S+ P +GKI R+
Sbjct: 531 KDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAP-SGKILRK 574
>pdb|3MI6|A Chain A, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|B Chain B, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|C Chain C, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|D Chain D, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
Length = 745
Score = 28.1 bits (61), Expect = 2.9, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 9/43 (20%)
Query: 121 GDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVF 163
GDLGY L++ K +PTE+D V K+ VA +K +++F
Sbjct: 600 GDLGYE-----LDITKXAPTELDQV----KKQVAFYKCYRQLF 633
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 152 NVASFKVPKKVFIADSLSGKPLTGKIQRRIVAELRK 187
+A FK PKKV D L + GK+Q+ ++ E K
Sbjct: 465 QLAKFKXPKKVIFVDDLP-RNTXGKVQKNVLRETYK 499
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,483,522
Number of Sequences: 62578
Number of extensions: 212719
Number of successful extensions: 419
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 39
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)