BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046701
(187 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMT7|4CLLA_ARATH 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10
PE=2 SV=1
Length = 514
Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 111/212 (52%), Gaps = 64/212 (30%)
Query: 35 RLE--FGCFVTSAISVCTVFVL-----LPKNGPHKASSVGKPVRREMAIPDENGVDQKAN 87
RLE FG V A ++ L LP+ GPHK SVGKPV +EMAI +E G Q+ N
Sbjct: 299 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEPN 358
Query: 88 VNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNM----------- 134
G++CIR GP V + NNPEANK F+FGWF +GD+GYFD+ L++
Sbjct: 359 NKGEVCIR-GPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLVGRIKELINRG 417
Query: 135 -WKISPTEVDAV-----------------------------------------KEFCKRN 152
KISP EVDAV K FCK+N
Sbjct: 418 GEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTTVTEEDIKAFCKKN 477
Query: 153 VASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
+A+FKVPK+VFI D+L K +GKIQRRIVA+
Sbjct: 478 LAAFKVPKRVFITDNLP-KTASGKIQRRIVAQ 508
>sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1827.03c PE=1
SV=1
Length = 512
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 58/180 (32%)
Query: 61 HKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAF-QFGW 117
HK SVGKP E+ I D+ G + G++C+R G V + +NNP ANK++F + +
Sbjct: 325 HKPHSVGKPFGVELKILDQKGNEMPQGKEGEICVR-GINVTKGYLNNPAANKSSFTKDRF 383
Query: 118 FLSGDLGYFDSQRCLNMW------------KISPTEVDAV-------------------- 145
F +GD G D + + KISP E+DAV
Sbjct: 384 FRTGDEGKLDKDGYVFITGRIKELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKY 443
Query: 146 ---------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIVAE 184
++ ++ VA+FK+PKK + D + K TGK+QRR+V +
Sbjct: 444 GQDIQAAINPVAGKTVTPKQLHDYLEQKVAAFKIPKKFYFTDRIP-KTATGKVQRRLVCD 502
>sp|P38137|FAT2_YEAST Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCS60 PE=1 SV=1
Length = 543
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 57/182 (31%)
Query: 59 GPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIR-EGPMVQRINNPEANKTAF--QF 115
G K +VG+P + I D+N G++ IR E + NNP+ANK F +
Sbjct: 351 GKRKPGTVGQPQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRE 410
Query: 116 GWFLSGDLGYFDSQRCLNMW------------KISPTEVDAVK----------------- 146
+F +GD GYFD + L + KISP E+D +
Sbjct: 411 NYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDD 470
Query: 147 ------------------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRRIV 182
F K+++ASFK+P KV+ D L K TGKIQRR++
Sbjct: 471 MYGQVVQAAIVLKKGEKMTYEELVNFLKKHLASFKIPTKVYFVDKLP-KTATGKIQRRVI 529
Query: 183 AE 184
AE
Sbjct: 530 AE 531
>sp|Q65FT5|MENE_BACLD 2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain
DSM 13 / ATCC 14580) GN=menE PE=3 SV=1
Length = 478
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 54/171 (31%)
Query: 51 VFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEA 108
+ L P+ K S GKP+ ++NG + + +G++ ++ GP V + + N A
Sbjct: 296 IATLAPEYSIEKLGSAGKPLFASSIKIEKNGTECQPGEHGEITVK-GPTVMKGYLKNEAA 354
Query: 109 NKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV----------- 145
NK +F GWF +GD+GYFD L + I P EV+AV
Sbjct: 355 NKDSFNDGWFKTGDIGYFDDDGFLYVLDRRSDLIISGGENIYPAEVEAVLLSHPNVAEAG 414
Query: 146 ----------------------------KEFCKRNVASFKVPKKVFIADSL 168
EFCK +AS+KVPK D L
Sbjct: 415 VKGVDDKTWGKVPHAYLVADSPVDEEELSEFCKERLASYKVPKAFHFVDRL 465
>sp|Q92AY8|MENE_LISIN 2-succinylbenzoate--CoA ligase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=menE PE=3 SV=2
Length = 467
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 66/192 (34%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQ--RI 103
+ + L PK+ +K S GK + E+ I D +G++ ++ GP + +
Sbjct: 284 TASQIVTLPPKDALNKIGSSGKALFPAEVKIAD----------DGEILLK-GPSITPGYL 332
Query: 104 NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------ 145
+N +A AF GWF +GD+GY D + L + + I PTE++ V
Sbjct: 333 HNEKATAKAFIDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVIGAYEA 392
Query: 146 ---------------------------------KEFCKRNVASFKVPKKVFIADSLSGKP 172
K+ C+ N+ASFK+PK++ I + L K
Sbjct: 393 VEEVAVVGKSDAKWGSVPVAFIVVNEGFDEGVLKDICQTNLASFKIPKQITIVEHLP-KT 451
Query: 173 LTGKIQRRIVAE 184
+GKIQR + E
Sbjct: 452 ASGKIQRNKLKE 463
>sp|P58730|MENE_LISMO 2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=menE PE=3 SV=2
Length = 467
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 66/192 (34%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQ--RI 103
+ + L PK+ +K S GK + E+ I D +G++ ++ GP + +
Sbjct: 284 TASQIVTLPPKDALNKIGSSGKALFPAEVKIAD----------DGEILLK-GPSITPGYL 332
Query: 104 NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVD-------A 144
+N +A + +F GWF +GD+GY D + L + + I PTE++ A
Sbjct: 333 HNKKATEASFVDGWFKTGDIGYLDEEGFLFVVERRSDLIISGGENIYPTEIEHVIGEYVA 392
Query: 145 VKE--------------------------------FCKRNVASFKVPKKVFIADSLSGKP 172
VKE C+ N+AS+K+PK++ I + L K
Sbjct: 393 VKEVAVIGQPDDKWGSVPVAFIVAEETFDEDELQLICQTNLASYKIPKQIIIVEKLP-KT 451
Query: 173 LTGKIQRRIVAE 184
+GKIQR + E
Sbjct: 452 ASGKIQRNKLKE 463
>sp|O53306|FAC13_MYCTU Long-chain-fatty-acid--CoA ligase FadD13 OS=Mycobacterium
tuberculosis GN=fadD13 PE=1 SV=1
Length = 503
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 56/186 (30%)
Query: 53 VLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQRI-NNPEANK 110
+LL ++ KA S G+ ++A+ ++GV ++ G++ I+ +++ N PEA +
Sbjct: 312 LLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATR 370
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV------------- 145
AF GWF +GD+G D + L + + P E+++V
Sbjct: 371 DAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 430
Query: 146 ---------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQ 178
E+C +A +K+PKKV A+++ P TGKI
Sbjct: 431 GLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNP-TGKIL 489
Query: 179 RRIVAE 184
+ ++ E
Sbjct: 490 KTVLRE 495
>sp|Q42982|4CL2_ORYSJ Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica
GN=4CL2 PE=2 SV=2
Length = 569
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQR- 102
+S+C F P P K+ S G VR E+ + D + G N+ G++CIR GP + +
Sbjct: 372 LSMCPAFAKEPT--PAKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIR-GPQIMKG 428
Query: 103 -INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+N+PEA GW +GD+GY D + + VD VKE K F+VP
Sbjct: 429 YLNDPEATAATIDVEGWLHTGDIGYVDDDDEVFI-------VDRVKELIK--FKGFQVP 478
>sp|P23971|MENE_BACSU 2-succinylbenzoate--CoA ligase OS=Bacillus subtilis (strain 168)
GN=menE PE=3 SV=2
Length = 486
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 56/194 (28%)
Query: 48 VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
C+ V L P+ K S GKP+ + +G + +G++ ++ GP V + N
Sbjct: 291 TCSQIVTLSPEFSMEKLGSAGKPLFSCEIKIERDGQVCEPYEHGEIMVK-GPNVMKSYFN 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
AN+ +FQ GW +GDLGY D++ L + I P EV++V
Sbjct: 350 RESANEASFQNGWLKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAV 409
Query: 146 --------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPL 173
++CK +A +K+P K F+ D L +
Sbjct: 410 AEAGVSGAEDKKWGKVPHAYLVLHKPVSAGELTDYCKERLAKYKIPAKFFVLDRLP-RNA 468
Query: 174 TGKIQRRIVAELRK 187
+ K+ R + + RK
Sbjct: 469 SNKLLRNQLKDARK 482
>sp|Q71YZ5|MENE_LISMF 2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes serotype
4b (strain F2365) GN=menE PE=3 SV=1
Length = 467
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 66/192 (34%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVR-REMAIPDENGVDQKANVNGKMCIREGPMVQ--RI 103
+ + L PK+ +K S GK + E+ I D +G++ ++ GP + +
Sbjct: 284 TASQIVTLPPKDALNKIGSSGKALFPAEVKIAD----------DGEILLK-GPSITPGYL 332
Query: 104 NNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEV-------DA 144
+N +A + +F GWF +GD+GY D + L + + I PTE+ +
Sbjct: 333 HNKKATEASFVDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVISEYEG 392
Query: 145 VKE--------------------------------FCKRNVASFKVPKKVFIADSLSGKP 172
VKE C+ N+A +K+PK++ I + L K
Sbjct: 393 VKEVAVIGKPDDKWGSVPVAFIVAEETFDEAELRLICETNLAGYKIPKQITIVEKLP-KT 451
Query: 173 LTGKIQRRIVAE 184
+GKIQR + E
Sbjct: 452 ASGKIQRNKLKE 463
>sp|C5D6U5|MENE_GEOSW 2-succinylbenzoate--CoA ligase OS=Geobacillus sp. (strain WCH70)
GN=menE PE=3 SV=1
Length = 492
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 56/177 (31%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
+ + L P+ K S GKP+ +++G + G++ ++ GP V + ++
Sbjct: 292 TASQIATLAPEYSLTKLGSAGKPLFPSQLRIEKDGQVARPYEPGEIVVK-GPNVTKGYLH 350
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
P+A A + GWF +GD+GY D L + + P E++AV
Sbjct: 351 RPDATAKAIRGGWFYTGDIGYIDEDGFLYVLDRRSDLIISGGENVYPAEIEAVLLSHEAV 410
Query: 146 ----------------------------------KEFCKRNVASFKVPKKVFIADSL 168
K+FC+ ++A +K+PK+++ D L
Sbjct: 411 EEAGVTGIDDETWGQVPCAFVKRKRGYSVTVEQLKQFCQAHLAKYKIPKQIYFVDEL 467
>sp|A7Z809|MENE_BACA2 2-succinylbenzoate--CoA ligase OS=Bacillus amyloliquefaciens
(strain FZB42) GN=menE PE=3 SV=1
Length = 487
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 57/208 (27%)
Query: 35 RLEFGCFVTSAIS-VCTVFVLL-PKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKM 92
R +F F + ++ C+ V L P+ K S GKP+ +++G +G++
Sbjct: 278 RKQFPVFQSYGLTETCSQIVTLSPEFSMDKLGSAGKPLFSCEIRIEKDGNPCAPFEHGEI 337
Query: 93 CIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------IS 138
++ GP V + + +AN+ AF GWF +GDLGY D + L + I
Sbjct: 338 TVK-GPNVMKGYYHRDDANQAAFHNGWFKTGDLGYLDDEGFLYVLDRRSDLIISGGENIY 396
Query: 139 PTEVDA---------------------------------------VKEFCKRNVASFKVP 159
P EV+A + FC+ +A +K+P
Sbjct: 397 PAEVEAALLAHPAVAEAGVSGSEDPKWGKVPHAFLVLTSSVSSEELTAFCRERLAKYKIP 456
Query: 160 KKVFIADSLSGKPLTGKIQRRIVAELRK 187
F D L + + K+ R + ELRK
Sbjct: 457 AAFFEVDGLP-RNASNKLMRHRLNELRK 483
>sp|P08659|LUCI_PHOPY Luciferin 4-monooxygenase OS=Photinus pyralis PE=1 SV=1
Length = 550
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +L+ G K +VGK P + + G N G++C+R GPM+
Sbjct: 341 GLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR-GPMIMS 399
Query: 103 --INNPEA-NKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+NNPEA N + GW SGD+ Y+D + ++++P E++++
Sbjct: 400 GYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESI 457
>sp|P13129|LUCI_LUCCR Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1
Length = 548
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
+NNPEA K + GW +GD+GY+D ++
Sbjct: 402 GYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432
>sp|Q6ZAC1|4CL5_ORYSJ Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica
GN=4CL5 PE=2 SV=1
Length = 539
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+S+C F P P K+ + G VR E+ I D + G+ N G++CIR +++
Sbjct: 338 LSMCMAFAKEPT--PVKSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGY 395
Query: 103 INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
+NNPEA KT + GW +GD+G+ D + + VD +KE K
Sbjct: 396 LNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFI-------VDRLKELIK 437
>sp|Q67W82|4CL4_ORYSJ Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica
GN=4CL4 PE=2 SV=1
Length = 559
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 58/176 (32%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQRINNPEANK-TAFQFGW 117
K+ S G VR E+ I D + G N +G++CIR E M +N+PE+ K T + GW
Sbjct: 365 KSGSCGTVVRNAELKIVDPDTGATLGRNQSGEICIRGEQIMKGYLNDPESTKNTIDKGGW 424
Query: 118 FLSGDLGYFDSQRCLNM------------WKISPTEVDA--------------------- 144
+GD+GY D + + +++ P E++A
Sbjct: 425 LHTGDIGYVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALLITHPDIKDAAVVPMIDEIA 484
Query: 145 --------------------VKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+K+F + V +K KVF ADS+ P +GKI R+
Sbjct: 485 GEVPVAFIVRIEGSAISENEIKQFVAKEVVFYKRLNKVFFADSIPKSP-SGKILRK 539
>sp|P17814|4CL1_ORYSJ Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica
GN=4CL1 PE=2 SV=2
Length = 564
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 64/200 (32%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQR 102
+S+C F P K+ + G VR E+ I D + G N+ G++CIR + M
Sbjct: 362 LSMCLAFAKEPFK--VKSGACGTVVRNAELKIIDPDTGKSLGRNLPGEICIRGQQIMKGY 419
Query: 103 INNPEANKTAFQF-GWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----- 144
+NNPEA K GW +GD+GY D + + ++++P E++A
Sbjct: 420 LNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKYRGFQVAPAELEALLITH 479
Query: 145 -------------------------------------VKEFCKRNVASFKVPKKVFIADS 167
VK+F + V +K ++VF D
Sbjct: 480 PSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDK 539
Query: 168 LSGKPLTGKIQRRIVAELRK 187
+ P +GKI R+ ELRK
Sbjct: 540 IPKAP-SGKILRK---ELRK 555
>sp|Q6ETN3|4CL3_ORYSJ Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica
GN=4CL3 PE=2 SV=1
Length = 554
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQRINNPEANK-TAFQFGW 117
K+ S G VR E+ I D + G N +G++CIR E M +N+PEA K T + GW
Sbjct: 355 KSGSCGTVVRNAELKIVDPDTGTSLGRNQSGEICIRGEQIMKGYLNDPEATKNTIDEDGW 414
Query: 118 FLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
+GD+G+ D + + VD +KE K F+VP
Sbjct: 415 LHTGDIGFVDDDDEIFI-------VDRLKEIIKYK--GFQVP 447
>sp|Q5KVX9|MENE_GEOKA 2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus (strain
HTA426) GN=menE PE=3 SV=1
Length = 490
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 56/177 (31%)
Query: 47 SVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--IN 104
+ + L P+ K S GKP+ ++G + G++ ++ GP V +
Sbjct: 291 TASQIATLAPEYSLTKLGSAGKPLFPAELCILKDGKPAAPHEAGEIVVK-GPNVTKGYWQ 349
Query: 105 NPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK------------ISPTEVDAV------- 145
PEA A + GWF +GD+GY D L + + P EV+AV
Sbjct: 350 RPEATAQAIRGGWFFTGDIGYLDEDGFLYVLDRRSDLIISGGENVYPAEVEAVLLSHPDV 409
Query: 146 ----------------------------------KEFCKRNVASFKVPKKVFIADSL 168
+ FC+ +A +KVP +++ D L
Sbjct: 410 EEAGVTGVENETWGQVPYAFVRLKRGASPDEAALRAFCRERLAKYKVPARIYFVDEL 466
>sp|Q01158|LUCI_LUCLA Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1
Length = 548
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 45 AISVCTVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGPMVQR 102
++ T +++ G K + GK P+ + I + N G++C++ GPM+ +
Sbjct: 343 GLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKTLGPNRRGEVCVK-GPMLMK 401
Query: 103 --INNPEANKTAF-QFGWFLSGDLGYFDSQR 130
++NPEA + + GW +GD+GY+D ++
Sbjct: 402 GYVDNPEATREIIDEEGWLHTGDIGYYDEEK 432
>sp|Q9LU36|4CL4_ARATH 4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1
Length = 570
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 62 KASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-RINNPEAN-KTAFQFGW 117
K+ + G +R EM + D E G+ N +G++C+R +++ +N+PEA +T + GW
Sbjct: 384 KSGACGTVIRNAEMKVVDTETGISLPRNKSGEICVRGHQLMKGYLNDPEATARTIDKDGW 443
Query: 118 FLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
+GD+G+ D + + ++++P E++A+
Sbjct: 444 LHTGDIGFVDDDDEIFIVDRLKELIKFKGYQVAPAELEAL 483
>sp|Q8ENZ7|MENE_OCEIH 2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=menE PE=3
SV=1
Length = 480
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 32 LPPRLEFGCFVTSAISVCTVFVLLPKNGPHKASSVGKPVR-REMAIP-DENGVDQKANVN 89
+P +G TS+ + L P++ K S GKP+ ++ I +EN +Q
Sbjct: 283 IPVFQSYGMTETSS----QIVTLTPEDALKKIGSAGKPLFPAQLKIAHNENNPNQI---- 334
Query: 90 GKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCL 132
G++ ++ GPMV + E NK F+ W +GD+GY D Q L
Sbjct: 335 GEILVK-GPMVTKGYYKRAETNKEVFENNWLHTGDMGYLDEQGYL 378
>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1
Length = 547
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 60/192 (31%)
Query: 46 ISVCTVFVLLPKNGPHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-R 102
+++C F P + K+ + G VR EM I D + G N G++CIR +++
Sbjct: 347 LAMCLAFAKEPFD--IKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGY 404
Query: 103 INNPEAN-KTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDA----- 144
+N+PEA +T + GW +GD+G+ D L + ++++P E++A
Sbjct: 405 LNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNH 464
Query: 145 ------------------------------------VKEFCKRNVASFKVPKKVFIADSL 168
VK+F + V +K K+VF +++
Sbjct: 465 PNISDAAVVPMKDEQAGEVPVAFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETV 524
Query: 169 SGKPLTGKIQRR 180
P +GKI R+
Sbjct: 525 PKSP-SGKILRK 535
>sp|Q838K1|MENE_ENTFA 2-succinylbenzoate--CoA ligase OS=Enterococcus faecalis (strain
ATCC 700802 / V583) GN=menE PE=3 SV=1
Length = 485
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 55/193 (28%)
Query: 49 CTVFVLLP-KNGPHKASSVGKPVRR-EMAIPDENGVDQKANVNGKMCIREGPMVQRINNP 106
C+ V L ++ K S G+P++ ++ I DE G +Q G++ ++ +V N
Sbjct: 289 CSQVVALKFEDAALKIGSAGQPLKDMQIKIVDELGQEQPEKQVGEILLKGPNVVSGYLNQ 348
Query: 107 EANKTAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV--------- 145
+ GWF +GD+GY D+Q L + I PTEV+ V
Sbjct: 349 RQPEKWTADGWFKTGDMGYLDAQSYLYLVSRLSELIISGGENIYPTEVEQVLQAITGIKA 408
Query: 146 ------------------------------KEFCKRNVASFKVPKKVFIADSLSGKPLTG 175
++ C R +A +K PK+++ S + +G
Sbjct: 409 AAVVGEPDAQWGAVPVAYVISDQEITLAQIQDQCSRKLAKYKRPKRIYFCHSFP-QTASG 467
Query: 176 KI-QRRIVAELRK 187
KI + R + E R+
Sbjct: 468 KIAKHRFMTEERE 480
>sp|P63521|LCFA_SALTY Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=fadD PE=3 SV=1
Length = 561
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 60/186 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P + + + S+G PV E + D++ + G++C++ GP M+ P+A
Sbjct: 370 PHDIDYHSGSIGLPVPSTEAKLVDDDDNEVAPGEAGELCVK-GPQVMLGYWQRPDATDEI 428
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
+ GW +GD+ D L + + + P E+
Sbjct: 429 IKDGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGV 488
Query: 143 ----------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
DA+ FC+R++ +KVPK+V + L K GKI RR
Sbjct: 489 PSGSSGEAVKLFVVKKDPALTDDALITFCRRHLTGYKVPKQVEFREELP-KSNVGKILRR 547
Query: 181 IVAELR 186
ELR
Sbjct: 548 ---ELR 550
>sp|P63522|LCFA_SALTI Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3
SV=1
Length = 561
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 60/186 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P + + + S+G PV E + D++ + G++C++ GP M+ P+A
Sbjct: 370 PHDIDYHSGSIGLPVPSTEAKLVDDDDNEVAPGEAGELCVK-GPQVMLGYWQRPDATDEI 428
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
+ GW +GD+ D L + + + P E+
Sbjct: 429 IKDGWLHTGDIAVMDEDGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGV 488
Query: 143 ----------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
DA+ FC+R++ +KVPK+V + L K GKI RR
Sbjct: 489 PSGSSGEAVKLFVVKKDPALTDDALITFCRRHLTGYKVPKQVEFREELP-KSNVGKILRR 547
Query: 181 IVAELR 186
ELR
Sbjct: 548 ---ELR 550
>sp|Q8ZES9|LCFA_YERPE Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3
SV=1
Length = 562
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 60/186 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P + H + S+G PV ++ + D++G D + G++ +R GP M+ P+A
Sbjct: 370 PYDLKHYSGSIGLPVPSTDVRLRDDDGNDVELGKPGELWVR-GPQVMLGYWQRPDATDDV 428
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
+ GW +GD+ D L + + + P E+
Sbjct: 429 LKDGWLATGDIATMDEDGFLRIVDRKKDMILVSGFNVYPNEIEEVVALHAKVLESAVIGV 488
Query: 143 ------DAVKEF----------------CKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+AVK F C+R + +KVPK V D L K GKI RR
Sbjct: 489 PNEVSGEAVKVFVVKNDASLTPEELLTHCRRYLTGYKVPKIVEFRDELP-KSNVGKILRR 547
Query: 181 IVAELR 186
ELR
Sbjct: 548 ---ELR 550
>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7
PE=1 SV=1
Length = 544
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 56 PKNGPHKASSVG--KPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANK- 110
P+ G + S G P + E G Q N G++ +R GP + + +NNP+A K
Sbjct: 354 PRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVR-GPNMMKGYLNNPQATKE 412
Query: 111 TAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCK 150
T + W +GDLGYF+ L + VD +KE K
Sbjct: 413 TIDKKSWVHTGDLGYFNEDGNLYV-------VDRIKELIK 445
>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica
GN=4CLL1 PE=2 SV=2
Length = 552
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 87 NVNGKMCIREGPMVQR--INNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWKISPTEVDA 144
N G++C+R GP V + NN +A + + GW +GDLGYFD L + VD
Sbjct: 395 NQVGEICVR-GPNVMQGYFNNVQATEFTIKQGWLHTGDLGYFDGGGQLFV-------VDR 446
Query: 145 VKEFCK 150
+KE K
Sbjct: 447 LKELIK 452
>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1
Length = 561
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 60 PHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIR-EGPMVQRINNPEA-NKTAFQF 115
P K+ S G VR E+ + E + N G++CIR + M + +N+PEA + T +
Sbjct: 378 PTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEE 437
Query: 116 GWFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVP 159
GW +GD+GY D + + VD +KE K F+VP
Sbjct: 438 GWLHTGDIGYVDEDDEIFI-------VDRLKEVIK--FKGFQVP 472
>sp|Q26304|LUCI_LUCMI Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1
Length = 548
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 50 TVFVLLPKNGPHKASSVGK--PVRREMAIPDENGVDQKANVNGKMCIREGP--MVQRINN 105
+ F++ P+ G K + GK P+ + I + N G++C++ GP M+ NN
Sbjct: 349 SAFIITPE-GDDKPGASGKVVPLFKVKVIDLDTKKTLGVNRRGEICVK-GPSLMLGYSNN 406
Query: 106 PEANK-TAFQFGWFLSGDLGYFDSQRCLNM------------WKISPTEVDAV 145
PEA + T + GW +GD+GY+D + +++ P E+++V
Sbjct: 407 PEATRETIDEEGWLHTGDIGYYDEDEHFFIVDRLKSLIKYKGYQVPPAELESV 459
>sp|B9J2F2|MENE_BACCQ 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain Q1)
GN=menE PE=3 SV=1
Length = 481
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFL 119
K S GKP+ + +++GV A G++ ++ GP V N +A + Q GW
Sbjct: 303 KVGSAGKPLFQCQLRIEKDGVVVPAFTEGEIVVK-GPNVTGGYFNREDATRETIQNGWLH 361
Query: 120 SGDLGYFDSQ 129
+GDLGY D +
Sbjct: 362 TGDLGYLDEE 371
>sp|Q9P7D7|LCF2_SCHPO Long-chain-fatty-acid--CoA ligase 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=lcf2 PE=3 SV=1
Length = 689
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 52 FVLLPKNGPHKASSVGKPVR----REMAIPDENGVDQKANVNGKMCIREGPMV--QRINN 105
FVL P+ A++VG P+ + + IPD + G++ IR GP V +N
Sbjct: 449 FVLSPEQWHLYANTVGFPIPSIEFKLVDIPDLGYYTDSSPPRGEVWIR-GPAVCNGYLNR 507
Query: 106 PEANKTAF-QFGWFLSGDLG 124
PE NK AF + GWF +GD+G
Sbjct: 508 PEDNKAAFTEDGWFKTGDVG 527
>sp|Q8XDR6|LCFA_ECO57 Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7
GN=fadD PE=3 SV=1
Length = 561
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 60/186 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P + + + S+G PV E + D++ + G++C+R GP M+ P+A
Sbjct: 370 PYDIDYHSGSIGLPVPSTEAKLVDDDDNEVSPGQPGELCVR-GPQVMLGYWQRPDATDEI 428
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
+ GW +GD+ D + L + + + P E+
Sbjct: 429 IKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGV 488
Query: 143 ------DAVK----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+AVK FC+R + +KVPK V D L K GKI RR
Sbjct: 489 PSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELP-KSNVGKILRR 547
Query: 181 IVAELR 186
ELR
Sbjct: 548 ---ELR 550
>sp|B7HTW3|MENE_BACC7 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH187)
GN=menE PE=3 SV=1
Length = 481
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFL 119
K S GKP+ + +++GV A G++ ++ GP V N +A + Q GW
Sbjct: 303 KVGSAGKPLFQCRLRIEKDGVVVPAFTEGEIVVK-GPNVTGGYFNREDATRETIQNGWLH 361
Query: 120 SGDLGYFDSQ 129
+GDLGY D +
Sbjct: 362 TGDLGYLDEE 371
>sp|Q632I5|MENE_BACCZ 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ZK /
E33L) GN=menE PE=3 SV=1
Length = 482
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 67/213 (31%)
Query: 32 LPPRLEFGCFVTSAISVCTV---FVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANV 88
+P +G TS+ +CT+ ++L+ K S GKP+ + +++GV
Sbjct: 278 IPVYQTYGMTETSS-QICTLSADYMLM------KVGSAGKPLFQCQLRIEKDGVVVPPFA 330
Query: 89 NGKMCIREGPMVQ--RINNPEANKTAFQFGWFLSGDLGYFDSQRCLNMWK---------- 136
G++ ++ GP V N +A + Q GW +GDLGY D + L +
Sbjct: 331 EGEIVVK-GPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGG 389
Query: 137 --ISPTEVDAV---------------------------------------KEFCKRNVAS 155
I P +++ V FC+ +A
Sbjct: 390 ENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITEEEILHFCEEKLAK 449
Query: 156 FKVPKKVFIADSL---SGKPLTGKIQRRIVAEL 185
+KVPKK + + L + K L + R++V E+
Sbjct: 450 YKVPKKAWFLEELPRNASKKLLRRELRQLVEEM 482
>sp|Q816I1|MENE_BACCR 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=menE PE=3 SV=1
Length = 482
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFL 119
K S GKP+ + +++GV V G++ ++ GP V N +A + Q GW
Sbjct: 304 KVGSAGKPLFQCQLRIEKDGVVVPPLVEGEIVVK-GPNVTGGYFNREDATRETIQNGWLH 362
Query: 120 SGDLGYFDSQ 129
+GDLGY D +
Sbjct: 363 TGDLGYLDEE 372
>sp|A0RK73|MENE_BACAH 2-succinylbenzoate--CoA ligase OS=Bacillus thuringiensis (strain Al
Hakam) GN=menE PE=3 SV=1
Length = 482
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFL 119
K S GKP+ + +++GV V G++ ++ GP V N +A + Q GW
Sbjct: 304 KVGSAGKPLFQCQLRIEKDGVVVPPFVEGEIVVK-GPNVTGGYFNREDATRETIQNGWLH 362
Query: 120 SGDLGYFDSQ 129
+GDLGY D +
Sbjct: 363 TGDLGYLDEE 372
>sp|Q72YK9|MENE_BACC1 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC
10987) GN=menE PE=3 SV=1
Length = 481
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFL 119
K S GKP+ + +++GV A G++ ++ GP V N +A + Q GW
Sbjct: 303 KVGSAGKPLFQCQLRIEKDGVVVPAFTEGEIVVK-GPNVTGGYFNREDATRETIQNGWLH 361
Query: 120 SGDLGYFDSQ 129
+GD+GY D +
Sbjct: 362 TGDIGYLDEE 371
>sp|P39062|ACSA_BACSU Acetyl-coenzyme A synthetase OS=Bacillus subtilis (strain 168)
GN=acsA PE=1 SV=1
Length = 572
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 62 KASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREG--PMVQRI-NNPEANKTAFQ-FG 116
K S+GKP+ E AI D G + G + I++G M+ I NNPE ++ F G
Sbjct: 375 KPGSMGKPIPGVEAAIVDNQGNELPPYRMGNLAIKKGWPSMMHTIWNNPEKYESYFMPGG 434
Query: 117 WFLSGDLGYFDSQRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGK 176
W++SGD Y D + VD V V F+V K+ +++ + GK
Sbjct: 435 WYVSGDSAYMDEEGYFWF----QGRVDDVIMTSGERVGPFEVESKLVEHPAIAEAGVIGK 490
>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2
Length = 556
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 58/178 (32%)
Query: 60 PHKASSVGKPVRR-EMAIPD-ENGVDQKANVNGKMCIREGPMVQ-RINNPEANKTAF-QF 115
P K+ + G VR EM I D + G N G++CIR +++ +N+P A + +
Sbjct: 368 PVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKD 427
Query: 116 GWFLSGDLGYFDSQRCLNM------------WKISPTEV--------------------- 142
GW +GD+G+ D L + ++++P E+
Sbjct: 428 GWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQVAPAELESLLIGHPEINDVAVVAMKEE 487
Query: 143 --------------------DAVKEFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
D +K+F + V +K KVF DS+ P +GKI R+
Sbjct: 488 DAGEVPVAFVVRSKDSNISEDEIKQFVSKQVVFYKRINKVFFTDSIPKAP-SGKILRK 544
>sp|A7GU88|MENE_BACCN 2-succinylbenzoate--CoA ligase OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=menE PE=3 SV=1
Length = 481
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQFGWFL 119
K S GKP+ +++G ANV G++ ++ GP V R +A + GW
Sbjct: 303 KVGSAGKPLFPCQLRIEKDGKVMPANVEGEIVVK-GPNVTRGYFKREDATRETIVDGWLH 361
Query: 120 SGDLGYFDSQ 129
+GDLGY D +
Sbjct: 362 TGDLGYVDDE 371
>sp|A9VM74|MENE_BACWK 2-succinylbenzoate--CoA ligase OS=Bacillus weihenstephanensis
(strain KBAB4) GN=menE PE=3 SV=1
Length = 481
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 43 TSAISVCTVFVLLPKNGPHKASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ- 101
+S I T +L K G S GKP+ + +++GV G++ ++ GP V
Sbjct: 289 SSQICTLTADYMLTKVG-----SAGKPLFQCQLRIEKDGVVVPPRAEGEIVVK-GPNVTG 342
Query: 102 -RINNPEANKTAFQFGWFLSGDLGYFDSQ 129
N +A A + GW +GDLGY D +
Sbjct: 343 GYFNREDATHEAIRNGWLHTGDLGYLDEE 371
>sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis
thaliana GN=AAE1 PE=2 SV=1
Length = 556
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 103 INNPEANKTAFQFGWFLSGDLG 124
+ NPEA K AF+ GWF SGDLG
Sbjct: 408 LKNPEATKEAFKGGWFWSGDLG 429
>sp|P69451|LCFA_ECOLI Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12)
GN=fadD PE=1 SV=1
Length = 561
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 60/186 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P + + + S+G PV E + D++ + G++C++ GP M+ P+A
Sbjct: 370 PYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVK-GPQVMLGYWQRPDATDEI 428
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
+ GW +GD+ D + L + + + P E+
Sbjct: 429 IKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGV 488
Query: 143 ------DAVK----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+AVK FC+R + +KVPK V D L K GKI RR
Sbjct: 489 PSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELP-KSNVGKILRR 547
Query: 181 IVAELR 186
ELR
Sbjct: 548 ---ELR 550
>sp|P69452|LCFA_ECOL6 Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=fadD PE=3 SV=1
Length = 561
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 60/186 (32%)
Query: 56 PKNGPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGP--MVQRINNPEANKTA 112
P + + + S+G PV E + D++ + G++C++ GP M+ P+A
Sbjct: 370 PYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVK-GPQVMLGYWQRPDATDEI 428
Query: 113 FQFGWFLSGDLGYFDSQRCLNM------------WKISPTEV------------------ 142
+ GW +GD+ D + L + + + P E+
Sbjct: 429 IKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGV 488
Query: 143 ------DAVK----------------EFCKRNVASFKVPKKVFIADSLSGKPLTGKIQRR 180
+AVK FC+R + +KVPK V D L K GKI RR
Sbjct: 489 PSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELP-KSNVGKILRR 547
Query: 181 IVAELR 186
ELR
Sbjct: 548 ---ELR 550
>sp|P39518|LCF2_YEAST Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FAA2 PE=1 SV=1
Length = 744
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 72 REMAIPDENGVDQKANVNGKMCIREGPMV--QRINNP-EANKTAFQFGWFLSGDLGYFDS 128
R ++P E G ++ G++ IR GP V + NP E +K Q GWF +GD+ + D
Sbjct: 523 RLKSVP-EMGYHADKDLKGELQIR-GPQVFERYFKNPNETSKAVDQDGWFSTGDVAFIDG 580
Query: 129 QRCLNMWKISPTEVDAVKEFCKRNVASFKVPKKV 162
+ +++ +D VK F K + P+K+
Sbjct: 581 KGRISV-------IDRVKNFFKLAHGEYIAPEKI 607
>sp|B7JDD6|MENE_BACC0 2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH820)
GN=menE PE=3 SV=1
Length = 482
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFL 119
K S GKP+ + +++GV G++ ++ GP V N +A + Q GW
Sbjct: 304 KVGSAGKPLFQCQLRIEKDGVVVPPFAEGEIVVK-GPNVTGGYFNREDATRETIQNGWLH 362
Query: 120 SGDLGYFDSQ 129
+GDLGY D +
Sbjct: 363 TGDLGYLDEE 372
>sp|P94547|LCFA_BACSU Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis (strain 168)
GN=lcfA PE=3 SV=1
Length = 560
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 59 GPHKASSVGKPV-RREMAIPDENGVDQKANVNGKMCIREGPMVQR--INNPEANKTAFQF 115
G +K S+G P + AI E + A I +GP V + N PE +
Sbjct: 371 GKNKPGSIGCPWPSTDAAIYSEETGELAAPYEHGEIIVKGPQVMKGYWNKPEETAAVLRD 430
Query: 116 GWFLSGDLGYFDSQ 129
GW +GD+GY D +
Sbjct: 431 GWLFTGDMGYMDEE 444
>sp|Q6HC29|MENE_BACHK 2-succinylbenzoate--CoA ligase OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=menE PE=3 SV=1
Length = 482
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 62 KASSVGKPVRREMAIPDENGVDQKANVNGKMCIREGPMVQ--RINNPEANKTAFQFGWFL 119
K S GKP+ + +++GV G++ ++ GP V N +A + Q GW
Sbjct: 304 KVGSAGKPLFQCQLRIEKDGVVVPPFAEGEIVVK-GPNVTGGYFNREDATRETIQNGWLH 362
Query: 120 SGDLGYFDSQ 129
+GDLGY D +
Sbjct: 363 TGDLGYLDEE 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,258,005
Number of Sequences: 539616
Number of extensions: 2742578
Number of successful extensions: 4919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 4828
Number of HSP's gapped (non-prelim): 173
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)