BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046702
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ESI|A Chain A, R248l Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 227 RKIVKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLL-- 284
R +VKT+ A+ + K + W + L S+ A+ T G A+ CL F
Sbjct: 171 RTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATR 230
Query: 285 -ASTVLGYMVGS----GLPSDVKKVFH 306
TV+G ++ S L SD K+ +
Sbjct: 231 GGKTVIGTVLASTSIPALESDATKIMN 257
>pdb|1ES5|A Chain A, S216a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 227 RKIVKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLL-- 284
R +VKT+ A+ + K + W + L S+ A+ T G A+ CL F
Sbjct: 171 RTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATR 230
Query: 285 -ASTVLGYMVGS----GLPSDVKKVFH 306
TV+G ++ S SD K+ +
Sbjct: 231 GGKTVIGTVLASTSIPARESDATKIMN 257
>pdb|1J9M|A Chain A, K38h Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 227 RKIVKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLL-- 284
R +VKT+ A+ + K + W + L S+ A+ T G A+ CL F
Sbjct: 171 RTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATR 230
Query: 285 -ASTVLGYMVGS----GLPSDVKKVFH 306
TV+G ++ S SD K+ +
Sbjct: 231 GGKTVIGTVLASTSIPARESDATKIMN 257
>pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15
Dd-transpeptidase
Length = 262
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 227 RKIVKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLL-- 284
R +VKT+ A+ + K + W + L S+ A+ T G A+ CL F
Sbjct: 171 RTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATR 230
Query: 285 -ASTVLGYMVGS----GLPSDVKKVFH 306
TV+G ++ S SD K+ +
Sbjct: 231 GGKTVIGTVLASTSIPARESDATKIMN 257
>pdb|1ES2|A Chain A, S96a Mutant Of Streptomyces K15 Dd-transpeptidase
Length = 262
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 227 RKIVKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLL-- 284
R +VKT+ A+ + K + W + L S+ A+ T G A+ CL F
Sbjct: 171 RTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATR 230
Query: 285 -ASTVLGYMVGS----GLPSDVKKVFH 306
TV+G ++ S SD K+ +
Sbjct: 231 GGKTVIGTVLASTSIPARESDATKIMN 257
>pdb|1ES4|A Chain A, C98n Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 227 RKIVKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLL-- 284
R +VKT+ A+ + K + W + L S+ A+ T G A+ CL F
Sbjct: 171 RTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATR 230
Query: 285 -ASTVLGYMVGS----GLPSDVKKVFH 306
TV+G ++ S SD K+ +
Sbjct: 231 GGKTVIGTVLASTSIPARESDATKIMN 257
>pdb|1ES3|A Chain A, C98a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 227 RKIVKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLL-- 284
R +VKT+ A+ + K + W + L S+ A+ T G A+ CL F
Sbjct: 171 RTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATR 230
Query: 285 -ASTVLGYMVGS----GLPSDVKKVFH 306
TV+G ++ S SD K+ +
Sbjct: 231 GGKTVIGTVLASTSIPARESDATKIMN 257
>pdb|3Q3Q|A Chain A, Crystal Structure Of Spap: An Novel Alkaline Phosphatase
From Bacterium Sphingomonas Sp. Strain Bsar-1
Length = 565
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 230 VKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLLA---S 286
V+T AE A PSP P E W+ LI A FYP+ G P +++
Sbjct: 428 VQTVFTKAEIAATPSPSGPPESWS-----LIQEARASFYPSRSGDLLLLLKPRVMSIPEQ 482
Query: 287 TVLGYMVGSGLPSDVKK 303
V+G + G P D +
Sbjct: 483 AVMGSVATHGSPWDTDR 499
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,594,428
Number of Sequences: 62578
Number of extensions: 297442
Number of successful extensions: 796
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 11
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)