BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046702
         (347 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P39042|DACX_STRSK D-alanyl-D-alanine carboxypeptidase OS=Streptomyces sp. (strain
           K15) PE=1 SV=1
          Length = 291

 Score = 34.3 bits (77), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 227 RKIVKTEMIDAEPMAKPSPFSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLL-- 284
           R +VKT+   A+ + K       + W  +   L S+  A+   T  G  A+ CL F    
Sbjct: 200 RTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATR 259

Query: 285 -ASTVLGYMVGS----GLPSDVKKVFH 306
              TV+G ++ S       SD  K+ +
Sbjct: 260 GGKTVIGTVLASTSIPARESDATKIMN 286


>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
           sativa subsp. japonica GN=HPT1 PE=2 SV=1
          Length = 404

 Score = 32.3 bits (72), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 22/98 (22%)

Query: 9   PQNLSSHHSQSHFSFANCVNL---KQSHHRIHPRSTLVAPNGVSAP-------HKFSS-- 56
           P +LSS  +Q   SF  C      K SHHRI  R T  + +    P       H  SS  
Sbjct: 43  PVSLSSQRTQGP-SFDQCQKFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSSSIW 101

Query: 57  ---------FKKFSKPITVLGHNSKFLQMGSQETQNLS 85
                    F +FS+P TV+G     + +     +NLS
Sbjct: 102 KPISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLS 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,551,870
Number of Sequences: 539616
Number of extensions: 4659222
Number of successful extensions: 14300
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 14296
Number of HSP's gapped (non-prelim): 10
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)