Query 046702
Match_columns 347
No_of_seqs 120 out of 143
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04125 murein hydrolase regu 99.9 3.3E-23 7.1E-28 181.5 9.8 114 109-234 8-124 (141)
2 PRK01658 holin-like protein; V 99.9 4.2E-23 9E-28 176.7 9.7 112 108-232 4-119 (122)
3 PRK01821 hypothetical protein; 99.9 6.4E-23 1.4E-27 178.1 10.2 113 107-231 8-123 (133)
4 COG1380 Putative effector of m 99.9 1.2E-22 2.7E-27 175.4 10.1 114 107-233 4-121 (128)
5 PF03788 LrgA: LrgA family; I 99.8 3.6E-21 7.8E-26 158.5 4.7 95 118-224 2-96 (96)
6 PF03616 Glt_symporter: Sodium 78.9 30 0.00065 35.0 11.9 105 112-224 224-328 (368)
7 PF04172 LrgB: LrgB-like famil 78.5 0.92 2E-05 42.9 1.0 37 287-323 1-38 (215)
8 TIGR00807 malonate_madL malona 70.0 14 0.00031 32.6 6.1 113 114-237 9-123 (125)
9 PF04172 LrgB: LrgB-like famil 60.4 40 0.00086 32.1 7.6 97 116-227 3-103 (215)
10 PF03616 Glt_symporter: Sodium 59.3 42 0.0009 34.0 8.0 46 106-153 4-52 (368)
11 COG0382 UbiA 4-hydroxybenzoate 55.4 2E+02 0.0043 27.6 12.5 89 224-324 64-158 (289)
12 TIGR00210 gltS sodium--glutama 54.7 1.3E+02 0.0028 31.0 10.8 106 112-225 222-327 (398)
13 PF01102 Glycophorin_A: Glycop 53.5 19 0.00042 31.5 4.0 58 194-251 59-117 (122)
14 PRK04288 antiholin-like protei 52.4 54 0.0012 31.7 7.1 97 116-227 18-119 (232)
15 COG1346 LrgB Putative effector 51.0 58 0.0012 31.6 7.0 96 117-227 17-116 (230)
16 TIGR00659 conserved hypothetic 49.2 1.3E+02 0.0028 29.0 9.1 96 116-227 13-113 (226)
17 TIGR00659 conserved hypothetic 48.0 13 0.00029 35.6 2.3 39 283-321 7-46 (226)
18 PRK10711 hypothetical protein; 46.5 87 0.0019 30.3 7.5 96 116-227 14-114 (231)
19 PRK04288 antiholin-like protei 39.8 24 0.00052 34.1 2.6 47 282-332 11-59 (232)
20 PF07672 MFS_Mycoplasma: Mycop 38.1 2.5E+02 0.0055 27.8 9.4 131 196-327 35-197 (267)
21 PF03390 2HCT: 2-hydroxycarbox 35.8 2.4E+02 0.0052 29.6 9.3 99 113-226 254-356 (414)
22 PF03817 MadL: Malonate transp 32.3 1.1E+02 0.0024 27.2 5.3 72 114-192 9-81 (125)
23 PF09656 PGPGW: Putative trans 30.2 1.4E+02 0.0031 22.7 5.0 20 133-154 19-38 (53)
24 PF06738 DUF1212: Protein of u 27.4 4.3E+02 0.0093 23.5 8.5 51 272-322 121-171 (193)
25 PRK12887 ubiA tocopherol phyty 26.3 6.4E+02 0.014 24.9 12.3 28 210-238 57-84 (308)
26 PF02447 GntP_permease: GntP f 25.5 8.1E+02 0.017 25.8 14.7 37 303-339 297-333 (441)
27 COG3493 CitS Na+/citrate sympo 25.2 64 0.0014 33.8 3.0 60 280-339 113-175 (438)
28 PHA03239 envelope glycoprotein 24.0 4.8E+02 0.01 27.7 9.1 91 121-227 250-355 (429)
29 PF05776 Papilloma_E5A: Papill 23.7 3.2E+02 0.007 22.8 6.3 71 93-186 10-80 (91)
30 COG0786 GltS Na+/glutamate sym 23.2 2.7E+02 0.0058 29.3 7.0 112 103-222 216-327 (404)
31 PRK15127 multidrug efflux syst 22.7 4.7E+02 0.01 30.2 9.5 39 201-239 1004-1042(1049)
32 PF10810 DUF2545: Protein of u 22.6 1.5E+02 0.0033 24.2 4.1 43 136-178 29-74 (80)
33 PF04277 OAD_gamma: Oxaloaceta 22.1 3.2E+02 0.0069 21.1 5.8 30 200-229 3-32 (79)
34 PLN02975 complex I subunit 21.5 2E+02 0.0043 24.5 4.8 45 246-294 26-70 (97)
35 COG3493 CitS Na+/citrate sympo 20.6 5.3E+02 0.011 27.4 8.5 33 117-154 276-308 (438)
No 1
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=99.89 E-value=3.3e-23 Score=181.54 Aligned_cols=114 Identities=14% Similarity=0.190 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccc
Q 046702 109 HLVVSLGIILVV---EKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPS 185 (347)
Q Consensus 109 ~~~~sL~lLl~~---ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS 185 (347)
+.+.+++++++| ||++.+.++ +|+||||+||++||++|+...-- .+|+|++++|+++||++||||+
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~---lPiPGsViGMlLL~l~L~~~~vk--------~~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLP---IPMPASVIGLVLLFVLLCTKVVK--------LEQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHHHhCCcC--------HHHHHHHHHHHHHHHHHHHhhh
Confidence 444555555555 999999997 99999999999999999954221 7999999999999999999999
Q ss_pred eeeccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046702 186 LVILPLSVRDIPAASGLKICYIIFGGWFASLCVAGFTAIAVRKIVKTEM 234 (347)
Q Consensus 186 ~VgLpls~~~i~~~eglkI~ai~VvstliTL~vTa~v~~~l~r~~~te~ 234 (347)
+||+|.|.+ ...+++++|++++++||+++|++||++++.+.|..+.+.
T Consensus 77 gVGim~~~~-ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r~~~~~~ 124 (141)
T PRK04125 77 GISVINSLG-VMSQYPVQIIGVIIVATILLLACTGLFSQFILGKTEKEK 124 (141)
T ss_pred HhHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999955 999999999999999999999999999999887655433
No 2
>PRK01658 holin-like protein; Validated
Probab=99.89 E-value=4.2e-23 Score=176.75 Aligned_cols=112 Identities=18% Similarity=0.376 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhhhCCccCChhHHHHHHHHHHHHh-hhccCchhhhhhhhhhHHHHHHHHHcCCcccc
Q 046702 108 AHLVVSLGIILVV---EKLLKKAFVAAAIKFPSALFGMFCIFSILMI-LDSTIPDAATSLMSFFEPALLFIQRWLPLFYV 183 (347)
Q Consensus 108 ~~~~~sL~lLl~~---ge~I~~~f~aa~IpfPgsViGMlLLFalLl~-~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFV 183 (347)
.+.+.+++++++| ||++.+.++ +|+|||++||++||++|.. +.+ .+|+|++++|+++||++|||
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~---lpiPGsViGmlLL~~~L~~~~ik---------~~~v~~~a~~Ll~~m~llFV 71 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLH---LPIPGSIIGIFLLLLLLSFKILK---------LKWIELGAETLLAELPLFFI 71 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHhCCcC---------HHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666 999999997 9999999999999999985 333 79999999999999999999
Q ss_pred cceeeccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046702 184 PSLVILPLSVRDIPAASGLKICYIIFGGWFASLCVAGFTAIAVRKIVKT 232 (347)
Q Consensus 184 PS~VgLpls~~~i~~~eglkI~ai~VvstliTL~vTa~v~~~l~r~~~t 232 (347)
|++||++.|.+ ...+|+++|++++++||+++|++||++++++.|+.+.
T Consensus 72 Pa~VGi~~~~~-ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~~~~~~ 119 (122)
T PRK01658 72 PSAVGVMNYGD-FLSSKGISLFLVVVISTFVVMIVTGYLTQLLAKRKER 119 (122)
T ss_pred HhhhHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999955 9999999999999999999999999999998876544
No 3
>PRK01821 hypothetical protein; Provisional
Probab=99.89 E-value=6.4e-23 Score=178.13 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccc
Q 046702 107 IAHLVVSLGIILVV---EKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYV 183 (347)
Q Consensus 107 ~~~~~~sL~lLl~~---ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFV 183 (347)
+.+.+.+++++++| ||++.+.++ +|+||||+||++||++|....-- .+|+|++++|+++||++|||
T Consensus 8 ~~~~l~~l~ill~~~~~Ge~i~~~l~---lpiPGsViGmlLLf~~L~~~~vk--------~~~v~~~a~~LL~~m~LfFV 76 (133)
T PRK01821 8 IWQYLRAFVLIYACLYAGIFIASLLP---ITIPGSIIGMLILFVLLALQILP--------AKWVKPGCSLLIRYMALLFV 76 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHHHhCCcC--------HHHHHHHHHHHHHHHHHHHh
Confidence 34667777777666 999999997 99999999999999999853221 78999999999999999999
Q ss_pred cceeeccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046702 184 PSLVILPLSVRDIPAASGLKICYIIFGGWFASLCVAGFTAIAVRKIVK 231 (347)
Q Consensus 184 PS~VgLpls~~~i~~~eglkI~ai~VvstliTL~vTa~v~~~l~r~~~ 231 (347)
|++||++.|.+ ...+++++|++++++||+++|++||+++++++|+.+
T Consensus 77 Pa~VGim~~~~-ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~~~~~ 123 (133)
T PRK01821 77 PIGVGVMQYYD-LLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVHGERK 123 (133)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999955 999999999999999999999999999999987643
No 4
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=175.42 Aligned_cols=114 Identities=22% Similarity=0.356 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhhhCCccCChhHHHHHHHHHHHH-hhhccCchhhhhhhhhhHHHHHHHHHcCCccc
Q 046702 107 IAHLVVSLGIILVV---EKLLKKAFVAAAIKFPSALFGMFCIFSILM-ILDSTIPDAATSLMSFFEPALLFIQRWLPLFY 182 (347)
Q Consensus 107 ~~~~~~sL~lLl~~---ge~I~~~f~aa~IpfPgsViGMlLLFalLl-~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFF 182 (347)
..+...+++++++| ||++++.++ +|+|||++||++||++|. ...+ .+|+|++|+|++|+|++||
T Consensus 4 ~~~~~~q~~ii~~~~~~G~~i~~~l~---lplPGsIiGmvLLfllL~~~iv~---------l~wv~~~a~~Ll~~m~llF 71 (128)
T COG1380 4 VMQILRQLAIILGFLFLGEWIASLLH---LPLPGSIIGMVLLFLLLALKIVK---------LEWVERGATFLLRNMALLF 71 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHHHHHHH
Confidence 45666777777776 999999997 999999999999999999 4444 8999999999999999999
Q ss_pred ccceeeccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046702 183 VPSLVILPLSVRDIPAASGLKICYIIFGGWFASLCVAGFTAIAVRKIVKTE 233 (347)
Q Consensus 183 VPS~VgLpls~~~i~~~eglkI~ai~VvstliTL~vTa~v~~~l~r~~~te 233 (347)
||++||+|.|.+ ...+++++|++++++||+++|.+|||+++.+.|..+.+
T Consensus 72 VPa~VgVm~y~~-~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~~~~~~ 121 (128)
T COG1380 72 VPAGVGVMNYFD-LLAADGLPILVVIIISTLLVLLVTGWVVQLLIRWQSKR 121 (128)
T ss_pred hcchHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999944 99999999999999999999999999999998775544
No 5
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=99.83 E-value=3.6e-21 Score=158.49 Aligned_cols=95 Identities=24% Similarity=0.450 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceeeccccCCccc
Q 046702 118 LVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVILPLSVRDIP 197 (347)
Q Consensus 118 l~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~VgLpls~~~i~ 197 (347)
+.+||++++.++ +|+|||++||++||++|.. ... + .+++|++++++++||++||||++||++.+.+ ..
T Consensus 2 ~~~G~~i~~~l~---lpiPgsviGmllL~~~L~~-~~v-k------~~~i~~~a~~Ll~~m~lfFvPa~VGi~~~~~-~l 69 (96)
T PF03788_consen 2 QLLGEWISRLLP---LPIPGSVIGMLLLFLLLMF-KIV-K------LEWIEPAANFLLKNMALFFVPAGVGIMEYFD-LL 69 (96)
T ss_pred chHHHHHHHHcC---CCCChHHHHHHHHHHHHHc-CCc-c------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 467999999997 9999999999999999992 221 1 5999999999999999999999999999954 99
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 198 AASGLKICYIIFGGWFASLCVAGFTAI 224 (347)
Q Consensus 198 ~~eglkI~ai~VvstliTL~vTa~v~~ 224 (347)
.+|++++++++++||++++.+|||++|
T Consensus 70 ~~~~~~i~~~i~vsT~l~~~~tg~~~q 96 (96)
T PF03788_consen 70 AQEGLPILVVIVVSTLLVLAVTGWVVQ 96 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999875
No 6
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=78.90 E-value=30 Score=34.98 Aligned_cols=105 Identities=16% Similarity=0.070 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceeeccc
Q 046702 112 VSLGIILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVILPL 191 (347)
Q Consensus 112 ~sL~lLl~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~VgLpl 191 (347)
..+.+..++|.++.+.+.+..+.+|.-+.+|+.-.++=.+.++..... --.+.++.-.+..+. +|-+=+...+.+
T Consensus 224 ~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~--id~~~i~~I~~~sL~---~fl~~almsl~l 298 (368)
T PF03616_consen 224 ALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYK--IDRKTIDRISGISLD---LFLAMALMSLKL 298 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCccc--CCHHHHHHHHHHHHH---HHHHHHHHhccH
Confidence 345666667888888888788999999999977666655666642211 112223333333333 344455555655
Q ss_pred cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 192 SVRDIPAASGLKICYIIFGGWFASLCVAGFTAI 224 (347)
Q Consensus 192 s~~~i~~~eglkI~ai~VvstliTL~vTa~v~~ 224 (347)
. ...+.+.+++.+++++++++.+.+-+++.
T Consensus 299 ~---~l~~~a~Plliil~~q~i~~~~f~~fv~f 328 (368)
T PF03616_consen 299 W---VLADYALPLLIILAVQTILMVLFAYFVTF 328 (368)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 57777899999999999999888766543
No 7
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=78.55 E-value=0.92 Score=42.95 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCccccc-chhhhhhhHHHHHHHHHHHh
Q 046702 287 TVLGYMVGSGLPSDVKK-VFHPIICCALSADLAALAFG 323 (347)
Q Consensus 287 TVl~y~~g~~lP~~~kK-vlHPIi~csl~t~l~a~~~g 323 (347)
|+..|+.+.++.++||+ .+||++++.++..+.-+..+
T Consensus 1 Tl~~y~~~~~l~~r~~~~~l~P~l~a~~~ii~~L~~~~ 38 (215)
T PF04172_consen 1 TLAAYLIAKWLYKRFKSPFLNPLLIAIVLIIAFLLLTG 38 (215)
T ss_pred CcHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHC
Confidence 67899999999999997 69999999988887777665
No 8
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=70.04 E-value=14 Score=32.56 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHH-hhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceeecccc
Q 046702 114 LGIILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILM-ILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVILPLS 192 (347)
Q Consensus 114 L~lLl~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl-~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~VgLpls 192 (347)
|++..+.|..+-+.++.+ +-+|+.|-|--+--.+|+ .++++.+ ..++....+.=..+-+-+|+|.-|..-..
T Consensus 9 La~C~L~G~~lGdlLG~l-lGV~aNVGGVGiAMlLLi~~~~~l~k------~G~l~~~te~Gi~FW~aMYIPIVVAMAA~ 81 (125)
T TIGR00807 9 LAVCHLLGVYLGNILGMA-LGVKANVGGVGIAMILLIISKELLAK------RGHLPQVTQFGVGFWSAMYIPIVVAMAAG 81 (125)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCCcccchHHHHHHHHHHHHHHHHH------cCCCChhHHhHHHHHHccHhHHHHHHhhh
Confidence 344444466666666533 668888877544433333 2222211 23334444444444578999987765544
Q ss_pred CCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 046702 193 VRDI-PAASGLKICYIIFGGWFASLCVAGFTAIAVRKIVKTEMIDA 237 (347)
Q Consensus 193 ~~~i-~~~eglkI~ai~VvstliTL~vTa~v~~~l~r~~~te~~~~ 237 (347)
++. .+-++..+..+-- +.+.++...+...+.|.-+.+.+++
T Consensus 82 -QNVv~Al~gG~~Allag---i~av~~~~~~i~~l~r~g~~~~~~a 123 (125)
T TIGR00807 82 -QNVVAALSGGMLALLAS---VAALIVTVLVIRWISKSSYGTYEPA 123 (125)
T ss_pred -chhHHHhcCCchHHHHH---HHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 333 3334444433322 2233444445566777766655544
No 9
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=60.38 E-value=40 Score=32.06 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceee--ccccC
Q 046702 116 IILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVI--LPLSV 193 (347)
Q Consensus 116 lLl~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~Vg--Lpls~ 193 (347)
+.|.+++.+.|-++ +..+-=-++.++++-++|...+-- .+..+.+.+++..+| -|+.|. +|+|
T Consensus 3 ~~y~~~~~l~~r~~--~~~l~P~l~a~~~ii~~L~~~~i~--------y~~Y~~gg~~l~~lL----gPatVALAvPLY- 67 (215)
T PF04172_consen 3 AAYLIAKWLYKRFK--SPFLNPLLIAIVLIIAFLLLTGIP--------YEDYMQGGDILSFLL----GPATVALAVPLY- 67 (215)
T ss_pred HHHHHHHHHHHHcC--CCcccHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHH----HHHHHHHHHHHH-
Confidence 35667787887665 222333455666655555554432 445555666665554 477664 5666
Q ss_pred C--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 194 R--DIPAASGLKICYIIFGGWFASLCVAGFTAIAVR 227 (347)
Q Consensus 194 ~--~i~~~eglkI~ai~VvstliTL~vTa~v~~~l~ 227 (347)
+ +...+++.+|+..+++|.++.+..+.+..+++.
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lg 103 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLG 103 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3 357888999999999999999999988777665
No 10
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=59.34 E-value=42 Score=34.01 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---HhhhCCccCChhHHHHHHHHHHHHhhh
Q 046702 106 GIAHLVVSLGIILVVEKLLKK---AFVAAAIKFPSALFGMFCIFSILMILD 153 (347)
Q Consensus 106 ~~~~~~~sL~lLl~~ge~I~~---~f~aa~IpfPgsViGMlLLFalLl~~~ 153 (347)
+..+.+..+.+++.+|+++++ .|. ..-+|+||+|=++..++.....
T Consensus 4 ~~~~tl~la~ilLliG~~Lr~ki~~lq--k~~IPasvIgGli~~il~~~l~ 52 (368)
T PF03616_consen 4 DALQTLALASILLLIGKFLRAKIPFLQ--KLFIPASVIGGLIFAILPLILG 52 (368)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHH--HccCCchHHHHHHHHHHHHHHH
Confidence 445667777888888999987 555 4778999999877433333333
No 11
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=55.39 E-value=2e+02 Score=27.64 Aligned_cols=89 Identities=18% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHHHhhcccccCCCCCCCCC-----CChHHHHHHHHHHHHHH-HhhhhccccCCCCchhhhhHHHHHHHHHHHHhcCC
Q 046702 224 IAVRKIVKTEMIDAEPMAKPSP-----FSPTEVWAWSGVFLISF-VAALFYPTALGTSARTCLPFLLASTVLGYMVGSGL 297 (347)
Q Consensus 224 ~~l~r~~~te~~~~ep~~k~~P-----Fs~~e~~~W~~v~~~s~-iv~~~~~~a~g~~~~~alPf~La~TVl~y~~g~~l 297 (347)
-.+++..+.|.|..+|.++..| .|..|.+....+..+.+ ++++.. ...+..+.+.+.++.+.-
T Consensus 64 ~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l-------~~~~~~l~~~~~~l~~~Y---- 132 (289)
T COG0382 64 YVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLL-------NPLAFLLSLAALVLALAY---- 132 (289)
T ss_pred HHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHH----
Confidence 5678889999998888754445 34445555543333333 323222 112233444444444433
Q ss_pred CcccccchhhhhhhHHHHHHHHHHHhh
Q 046702 298 PSDVKKVFHPIICCALSADLAALAFGY 324 (347)
Q Consensus 298 P~~~kKvlHPIi~csl~t~l~a~~~g~ 324 (347)
+..|+.-+.-..+...+.......|+
T Consensus 133 -~~~Kr~~~~~~~~lg~~~~~~~~~g~ 158 (289)
T COG0382 133 -PFLKRFTFLPQLVLGLAFGLGALAGA 158 (289)
T ss_pred -HHhhcCCchHHHHHHHHHHHHHHHHH
Confidence 34676666666665555555544444
No 12
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=54.74 E-value=1.3e+02 Score=31.03 Aligned_cols=106 Identities=17% Similarity=0.067 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceeeccc
Q 046702 112 VSLGIILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVILPL 191 (347)
Q Consensus 112 ~sL~lLl~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~VgLpl 191 (347)
..+.+..++|..+.+.+++..+.+|.-+.+|+.-.+.=.+.|+...... ..+.++.-.+.. +.+|-+=+...+.+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~--~~~~i~~I~~~s---Ldlfl~~AlmsL~L 296 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWV--AERAVSVIGNVS---LSLFLAIALMSLQL 296 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCcccc--chHHHHHHHHHH---HHHHHHHHHHhCcH
Confidence 3466666678888888865569999999999987777777776432111 112333333333 34566666777777
Q ss_pred cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 192 SVRDIPAASGLKICYIIFGGWFASLCVAGFTAIA 225 (347)
Q Consensus 192 s~~~i~~~eglkI~ai~VvstliTL~vTa~v~~~ 225 (347)
. ...+.+.+++.+++.+++.+...+-|++..
T Consensus 297 ~---~l~~~a~Plliil~~q~i~~~l~~~fv~fr 327 (398)
T TIGR00210 297 W---ELADLAGPIALILLVQVMFMALYAIFVTFR 327 (398)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6 678889999999999999999888776543
No 13
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=53.47 E-value=19 Score=31.49 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=25.6
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCC-CCCCCCChHHH
Q 046702 194 RDIPAASGLKICYIIFGGWFASLCVAGFTAIAVRKIVKTEMIDAEPM-AKPSPFSPTEV 251 (347)
Q Consensus 194 ~~i~~~eglkI~ai~VvstliTL~vTa~v~~~l~r~~~te~~~~ep~-~k~~PFs~~e~ 251 (347)
.+....+...|++-++.|.+.++++..|..+.+||..+.+.++.++. -...|++.-|.
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p~P~~~d~~~p~~~~~~ 117 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQPLPEEDDTDVPLSSVEI 117 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-------------------------
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcceeee
Confidence 34666777788888888888888888888777776655555442222 13346665443
No 14
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=52.42 E-value=54 Score=31.71 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhhCCccCChh-HHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceee--cccc
Q 046702 116 IILVVEKLLKKAFVAAAIKFPSA-LFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVI--LPLS 192 (347)
Q Consensus 116 lLl~~ge~I~~~f~aa~IpfPgs-ViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~Vg--Lpls 192 (347)
+.|.+++.+.+-++ ..|+=-| ++.++++-++|...+-- .+..+.+++|+..+ --|+.|. +|+|
T Consensus 18 ~~y~~~~~l~~r~~--~~~~lnPll~s~~~ii~~L~~~~i~--------Y~~Y~~g~~~l~~l----LgPAtVALAvPLY 83 (232)
T PRK04288 18 IAFGIGTILFKKSK--GFFLFTPLFVAMVLGIAFLKLTGIS--------YEEYNIGGDIISFF----LEPATIAFAIPLY 83 (232)
T ss_pred HHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHHHHHhCCC--------HHHHHhhhHHHHHH----HHHHHHHHHHHHH
Confidence 34555777777662 1443334 55666666666654432 45556676665544 4587774 5777
Q ss_pred CCc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 193 VRD--IPAASGLKICYIIFGGWFASLCVAGFTAIAVR 227 (347)
Q Consensus 193 ~~~--i~~~eglkI~ai~VvstliTL~vTa~v~~~l~ 227 (347)
++ ...+++..|...+++|.+++++.+.++.+++.
T Consensus 84 -~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lg 119 (232)
T PRK04288 84 -KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQ 119 (232)
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 43 47788999999999999999999877776654
No 15
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=51.03 E-value=58 Score=31.62 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCccccccee--eccccCC
Q 046702 117 ILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLV--ILPLSVR 194 (347)
Q Consensus 117 Ll~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~V--gLpls~~ 194 (347)
.|.+++.+.+=++ +..+=--++.|+++-++|...+-- .+....+++|+.-+| =|+.| .+|+| +
T Consensus 17 ~y~~a~~l~~r~~--~~~l~PlLv~~~~li~~L~~~~i~--------Y~~Y~~g~~~i~~lL----gPAtVAlAvPLY-k 81 (230)
T COG1346 17 AYFAAKRLYKRTK--SPFLNPLLVATVLLIAFLLLFGIS--------YEDYMKGGQWINFLL----GPATVALAVPLY-K 81 (230)
T ss_pred HHHHHHHHHHhcC--CcccchHHHHHHHHHHHHHHcCCC--------HHHHhcccHHHHHHH----HHHHHHHhhHHH-H
Confidence 3455777777665 233334577888888888865432 344444555544444 36665 46887 5
Q ss_pred c--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 195 D--IPAASGLKICYIIFGGWFASLCVAGFTAIAVR 227 (347)
Q Consensus 195 ~--i~~~eglkI~ai~VvstliTL~vTa~v~~~l~ 227 (347)
+ +..++|..|.+.+++|.++.+..+.+..+++.
T Consensus 82 q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g 116 (230)
T COG1346 82 QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFG 116 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 47888999999999999999999877776654
No 16
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=49.16 E-value=1.3e+02 Score=28.96 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhhhCCccCChhH-HHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceee--cccc
Q 046702 116 IILVVEKLLKKAFVAAAIKFPSAL-FGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVI--LPLS 192 (347)
Q Consensus 116 lLl~~ge~I~~~f~aa~IpfPgsV-iGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~Vg--Lpls 192 (347)
+.|.+++.+.+-.+ .|+=.|+ +.++++-.+|...+-- .+..+.+++|+.- |--|+.|. +|+|
T Consensus 13 ~~y~~~~~l~~r~~---~~~lnPvl~~~~~ii~~L~~~~i~--------Y~~Y~~g~~~l~~----lLgPAtVALAvPLY 77 (226)
T TIGR00659 13 LVFFGAKKLYQRFK---RPYLNPLLLTPLVLVGILLLVGIP--------YESYMLGGGVIND----LLGPAVVALAIPLY 77 (226)
T ss_pred HHHHHHHHHHHHcC---CccccHHHHHHHHHHHHHHHhCCC--------HHHHHHhhHHHHH----hhHHHHHHHHHHHH
Confidence 34555777777554 4444444 5555555555554331 4555677776654 44587774 5666
Q ss_pred CCc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 193 VRD--IPAASGLKICYIIFGGWFASLCVAGFTAIAVR 227 (347)
Q Consensus 193 ~~~--i~~~eglkI~ai~VvstliTL~vTa~v~~~l~ 227 (347)
+. ...+++..|...+.+|.++.+..+.++.+.+.
T Consensus 78 -~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg 113 (226)
T TIGR00659 78 -KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLG 113 (226)
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 43 37788999999999999999988877766654
No 17
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=48.02 E-value=13 Score=35.61 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCccccc-chhhhhhhHHHHHHHHHH
Q 046702 283 LLASTVLGYMVGSGLPSDVKK-VFHPIICCALSADLAALA 321 (347)
Q Consensus 283 ~La~TVl~y~~g~~lP~~~kK-vlHPIi~csl~t~l~a~~ 321 (347)
.+..|+..|+.+.++-+++|. .+||++++.+.-...-..
T Consensus 7 ~l~lTl~~y~~~~~l~~r~~~~~lnPvl~~~~~ii~~L~~ 46 (226)
T TIGR00659 7 SLFLTLLVFFGAKKLYQRFKRPYLNPLLLTPLVLVGILLL 46 (226)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHH
Confidence 467799999999999888875 689999988766555444
No 18
>PRK10711 hypothetical protein; Provisional
Probab=46.49 E-value=87 Score=30.27 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhhCCccCChhH-HHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceee--cccc
Q 046702 116 IILVVEKLLKKAFVAAAIKFPSAL-FGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVI--LPLS 192 (347)
Q Consensus 116 lLl~~ge~I~~~f~aa~IpfPgsV-iGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~Vg--Lpls 192 (347)
+.|.+++.+.+-.+ .++=.|+ +.++++-++|...+-- .+..+.+++|+ ..|--|+.|. +|+|
T Consensus 14 ~~y~~~~~l~~k~~---~~~l~Pll~s~~~ii~~L~~~~i~--------Y~~Y~~g~~~l----~~lLgPAtVALAvPLY 78 (231)
T PRK10711 14 IVFFAARKLAARFK---FPLLNPLLVAMVVIIPFLLLTGIP--------YEHYFKGSEVL----NDLLQPAVVALAFPLY 78 (231)
T ss_pred HHHHHHHHHHHHcC---CCcccHHHHHHHHHHHHHHHhCCC--------HHHHHhccHHH----HhhhhHHHHHHHHHHH
Confidence 34555777777554 4444444 4555555555544331 35556666555 4555688775 5777
Q ss_pred CCc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 193 VRD--IPAASGLKICYIIFGGWFASLCVAGFTAIAVR 227 (347)
Q Consensus 193 ~~~--i~~~eglkI~ai~VvstliTL~vTa~v~~~l~ 227 (347)
++ ...+++..|...+++|.++.+..+..+.+++.
T Consensus 79 -~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg 114 (231)
T PRK10711 79 -EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMG 114 (231)
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 43 57888999999999999999988877766654
No 19
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=39.76 E-value=24 Score=34.07 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCccc-cc-chhhhhhhHHHHHHHHHHHhhhcCCCchh
Q 046702 282 FLLASTVLGYMVGSGLPSDV-KK-VFHPIICCALSADLAALAFGYLSKSGLDP 332 (347)
Q Consensus 282 f~La~TVl~y~~g~~lP~~~-kK-vlHPIi~csl~t~l~a~~~g~i~G~gl~~ 332 (347)
|.+..|+..|..+.++=+++ |. .+||++++.++-...-+. .|.++++
T Consensus 11 ~~l~lTl~~y~~~~~l~~r~~~~~~lnPll~s~~~ii~~L~~----~~i~Y~~ 59 (232)
T PRK04288 11 FGILVSLIAFGIGTILFKKSKGFFLFTPLFVAMVLGIAFLKL----TGISYEE 59 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHH----hCCCHHH
Confidence 56778999999999887777 43 389999887776665554 4455544
No 20
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=38.06 E-value=2.5e+02 Score=27.83 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=62.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCC-C-----CChHHHHHHHHHHHHHHHhhhhcc
Q 046702 196 IPAASGLKICYIIFGGWFASLCVAGFTAIAVRKIVKTEMIDAEPMAKPS-P-----FSPTEVWAWSGVFLISFVAALFYP 269 (347)
Q Consensus 196 i~~~eglkI~ai~VvstliTL~vTa~v~~~l~r~~~te~~~~ep~~k~~-P-----Fs~~e~~~W~~v~~~s~iv~~~~~ 269 (347)
-...+|.-+..++..=.++.+++=.+.-+-..-..+.|++|.+...... | ..+.|-|.|..++-+-.+ ..+.|
T Consensus 35 ~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv-~~V~p 113 (267)
T PF07672_consen 35 ALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEKENSTLSKKPSYKSILKEKETWKWILIYGIWLV-VVVFP 113 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccccccccccccccchHHHHHccchHHHHHHHHHHHhe-eEEEe
Confidence 4455676666666655555555543332211111122222222211111 2 113356788766553332 33444
Q ss_pred ccCC-------------------CCchhhhhHHHHHHHHHHHHhcCCCccc-------ccchhhhhhhHHHHHHHHHHHh
Q 046702 270 TALG-------------------TSARTCLPFLLASTVLGYMVGSGLPSDV-------KKVFHPIICCALSADLAALAFG 323 (347)
Q Consensus 270 ~a~g-------------------~~~~~alPf~La~TVl~y~~g~~lP~~~-------kKvlHPIi~csl~t~l~a~~~g 323 (347)
++.+ +......|.++..=|+|+.+|--+=.+| |++.|=++.+..+-.+.+..++
T Consensus 114 ~t~~~~~~~~~~s~~ni~~~~~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~ 193 (267)
T PF07672_consen 114 FTPSWFNILIWISPANIKSVVSGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVV 193 (267)
T ss_pred ccchhHhHhhhcCcccccccccccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1223334566666666666663322233 5677777777666666666665
Q ss_pred hhcC
Q 046702 324 YLSK 327 (347)
Q Consensus 324 ~i~G 327 (347)
+.-|
T Consensus 194 ~~~g 197 (267)
T PF07672_consen 194 YFVG 197 (267)
T ss_pred HHhC
Confidence 4444
No 21
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=35.83 E-value=2.4e+02 Score=29.63 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccc-eeeccc
Q 046702 113 SLGIILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPS-LVILPL 191 (347)
Q Consensus 113 sL~lLl~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS-~VgLpl 191 (347)
--..+|.+|..+++.+ .+|+.+. |+++.+++-..+-+ .+.+|.++....++..=-+++. +|++=.
T Consensus 254 la~~~y~~G~ll~~~i-----~ih~~a~-mIi~~~i~K~~~lv--------P~~~e~~a~~~~~f~~~~lt~~lLvgiGv 319 (414)
T PF03390_consen 254 LACSFYILGVLLSKLI-----GIHAYAW-MIILVAIVKAFGLV--------PESLEEGAKQWYKFFSKNLTWPLLVGIGV 319 (414)
T ss_pred HHHHHHHHHHHHHHhc-----CCcHHHH-HHHHHHHHHHhCcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677799888866 6788885 77666655555444 7788888888888877767664 222222
Q ss_pred c---CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 192 S---VRDIPAASGLKICYIIFGGWFASLCVAGFTAIAV 226 (347)
Q Consensus 192 s---~~~i~~~eglkI~ai~VvstliTL~vTa~v~~~l 226 (347)
. ++++.+.= -.--.++++.++++++.++++.-.+
T Consensus 320 ~~~~l~~l~~a~-t~~~vv~~~~~Vl~~~~~a~~vG~l 356 (414)
T PF03390_consen 320 AYTDLNDLIAAF-TPQYVVIVLATVLGAVIGAFLVGKL 356 (414)
T ss_pred hhCcHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11121111 1223344555555566655554433
No 22
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=32.28 E-value=1.1e+02 Score=27.20 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHH-hhhccCchhhhhhhhhhHHHHHHHHHcCCcccccceeecccc
Q 046702 114 LGIILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILM-ILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSLVILPLS 192 (347)
Q Consensus 114 L~lLl~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl-~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~VgLpls 192 (347)
|++.++.|..+-+.+++. +-+++.|-|--+--.+|+ ..+++.. ..++...++.=..+-+-+|+|.-|..-..
T Consensus 9 La~C~l~G~~~GdlLG~l-lGV~aNVGGVGiAMlLLI~~~~~l~k------~g~l~~~te~Gi~FW~amYIPIVVAMAA~ 81 (125)
T PF03817_consen 9 LAICTLAGVFLGDLLGAL-LGVKANVGGVGIAMLLLIFARLWLQK------KGLLSKPTEQGIEFWSAMYIPIVVAMAAQ 81 (125)
T ss_pred HHHHHHHHHHHHHHHHHH-hCCCcccccHHHHHHHHHHHHHHHHH------cCCCChHHHhHHHHHHccHHHHHHHHhhh
Confidence 334444455555555422 568888877544444443 3333211 22333333333444577899987765544
No 23
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=30.22 E-value=1.4e+02 Score=22.69 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.0
Q ss_pred ccCChhHHHHHHHHHHHHhhhc
Q 046702 133 IKFPSALFGMFCIFSILMILDS 154 (347)
Q Consensus 133 IpfPgsViGMlLLFalLl~~~~ 154 (347)
+++||| |++++|+.|.++..
T Consensus 19 ~~lPGp--G~l~i~~GL~iLa~ 38 (53)
T PF09656_consen 19 LPLPGP--GLLVIFLGLAILAT 38 (53)
T ss_pred hcCCCC--cHHHHHHHHHHHHH
Confidence 789998 99999999997744
No 24
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=27.43 E-value=4.3e+02 Score=23.49 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=24.7
Q ss_pred CCCCchhhhhHHHHHHHHHHHHhcCCCcccccchhhhhhhHHHHHHHHHHH
Q 046702 272 LGTSARTCLPFLLASTVLGYMVGSGLPSDVKKVFHPIICCALSADLAALAF 322 (347)
Q Consensus 272 ~g~~~~~alPf~La~TVl~y~~g~~lP~~~kKvlHPIi~csl~t~l~a~~~ 322 (347)
+|++..-+..-++...+.+++.-..--.+.-+++.+++..-+.+.++....
T Consensus 121 fgg~~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~~~ 171 (193)
T PF06738_consen 121 FGGSWIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAALLA 171 (193)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 566666655555555554444322122233456666655444444444433
No 25
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=26.32 E-value=6.4e+02 Score=24.87 Aligned_cols=28 Identities=21% Similarity=0.595 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 046702 210 GGWFASLCVAGFTAIAVRKIVKTEMIDAE 238 (347)
Q Consensus 210 vstliTL~vTa~v~~~l~r~~~te~~~~e 238 (347)
+.++..++.-.|+ .++++..+.|.|..+
T Consensus 57 ~~~~~~~~~nv~i-~~iNd~~D~~iD~in 84 (308)
T PRK12887 57 GAWIACLCGNVYI-VGLNQLTDIEIDRIN 84 (308)
T ss_pred HHHHHHHHHHHHH-HHHhhhhhHHHHhcC
Confidence 3334444443333 347877777766554
No 26
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=25.46 E-value=8.1e+02 Score=25.76 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=20.2
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhcCCCchhhhhhhcc
Q 046702 303 KVFHPIICCALSADLAALAFGYLSKSGLDPVLGNYLT 339 (347)
Q Consensus 303 KvlHPIi~csl~t~l~a~~~g~i~G~gl~~~L~~Y~T 339 (347)
+-+.|.-.--+++..+...=+.++..|..+.+..-..
T Consensus 297 ~al~~~g~IlLItgaGGafg~vl~~sgi~~~i~~~~~ 333 (441)
T PF02447_consen 297 KALKPAGMILLITGAGGAFGQVLKDSGIGDAIANLLS 333 (441)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHhCCHHHHHHHHHH
Confidence 4455544444444444444445777777777665443
No 27
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=25.16 E-value=64 Score=33.82 Aligned_cols=60 Identities=20% Similarity=0.365 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHhcC---CCcccccchhhhhhhHHHHHHHHHHHhhhcCCCchhhhhhhcc
Q 046702 280 LPFLLASTVLGYMVGSG---LPSDVKKVFHPIICCALSADLAALAFGYLSKSGLDPVLGNYLT 339 (347)
Q Consensus 280 lPf~La~TVl~y~~g~~---lP~~~kKvlHPIi~csl~t~l~a~~~g~i~G~gl~~~L~~Y~T 339 (347)
+=|+.++.++|=..|.+ +=|..+|++-|++...+.+.+..-+.|.+-|.++++++=+|..
T Consensus 113 L~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m~~vl 175 (438)
T COG3493 113 LDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMMYVVL 175 (438)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeeeeEEe
Confidence 33666666777777764 6788999999999999999999999999999999999998876
No 28
>PHA03239 envelope glycoprotein M; Provisional
Probab=23.97 E-value=4.8e+02 Score=27.66 Aligned_cols=91 Identities=21% Similarity=0.187 Sum_probs=60.2
Q ss_pred HHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCcccccce--------ee----
Q 046702 121 EKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFYVPSL--------VI---- 188 (347)
Q Consensus 121 ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFFVPS~--------Vg---- 188 (347)
+..+.+=|. +.++..|.|.+-+|+.|.+.--+ -.=-++-|++-+.|=|.+ .+
T Consensus 250 ~m~~gNsF~---v~~~~~v~~ai~~F~vL~iiyli-------------v~E~vL~~Yv~vl~G~~lG~lia~~iL~~aa~ 313 (429)
T PHA03239 250 ALIMALHFG---LDIPKATSGALSMFIVLGIIYLM-------------MAELTVAHYVHVLIGPHLGMIIACAIAGTAAH 313 (429)
T ss_pred HHHHhccee---eehhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Confidence 555556665 99999999999999999855221 122356666666666632 22
Q ss_pred -ccccC-Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 189 -LPLSV-RDIP-AASGLKICYIIFGGWFASLCVAGFTAIAVR 227 (347)
Q Consensus 189 -Lpls~-~~i~-~~eglkI~ai~VvstliTL~vTa~v~~~l~ 227 (347)
.|... +.+. ..+.+.......++.+..+++...+.|.+|
T Consensus 314 ~Y~~~~Y~~v~v~a~~l~~~v~~~Laviail~l~~~ivRlvR 355 (429)
T PHA03239 314 AYADRLYDEIMIASPKLIQGAAGILAAFAVISIALAILRATR 355 (429)
T ss_pred hhhHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 3343 344466667788888888888888888888
No 29
>PF05776 Papilloma_E5A: Papillomavirus E5A protein; InterPro: IPR008736 Human papillomaviruses (HPVs) are epitheliotropic viruses, and their life cycle is intimately linked to the stratification and differentiation state of the host epithelial tissues. The kinetics of E5a protein expression during the complete viral life cycle has been studied and the highest level was found to be coincidental with the onset of virion morphogenesis [].
Probab=23.73 E-value=3.2e+02 Score=22.82 Aligned_cols=71 Identities=20% Similarity=0.407 Sum_probs=43.7
Q ss_pred CCCCcchhhhhHhhHHHHHHHHHHHHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHH
Q 046702 93 SGSTSATLSKRVLGIAHLVVSLGIILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALL 172 (347)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~sL~lLl~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~ 172 (347)
++.||...++-+.....-+.|+-++..+.|.+.. .||.-+-++.-+|+++ .+.++..
T Consensus 10 ~~tTs~siLP~vIA~~VC~vSIilii~is~F~vY----------tsvLVLTLllYlLLWL-------------LLTt~LQ 66 (91)
T PF05776_consen 10 AGTTSTSILPVVIALTVCFVSIILIIFISDFVVY----------TSVLVLTLLLYLLLWL-------------LLTTPLQ 66 (91)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH-------------HHcchHH
Confidence 5667777777666666666677666666665544 3444443333333322 2345677
Q ss_pred HHHHcCCcccccce
Q 046702 173 FIQRWLPLFYVPSL 186 (347)
Q Consensus 173 fLLrwLpLFFVPS~ 186 (347)
|.+--+++.|.|++
T Consensus 67 F~lLTL~~C~~PAf 80 (91)
T PF05776_consen 67 FYLLTLSVCYLPAF 80 (91)
T ss_pred HHHHHHHHHHhHHH
Confidence 88888888998886
No 30
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=23.19 E-value=2.7e+02 Score=29.30 Aligned_cols=112 Identities=17% Similarity=0.111 Sum_probs=69.3
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhccCchhhhhhhhhhHHHHHHHHHcCCccc
Q 046702 103 RVLGIAHLVVSLGIILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDSTIPDAATSLMSFFEPALLFIQRWLPLFY 182 (347)
Q Consensus 103 ~~~~~~~~~~sL~lLl~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~l~~~~a~~~~~~iep~A~fLLrwLpLFF 182 (347)
+....+..+.-+.+..++|+.|.+++++-.+.+|.=|-+|+.=-+.-.+.++..... -..+.++.-.|..| ++|-
T Consensus 216 ~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~--v~~~~v~~ig~vsL---~lfl 290 (404)
T COG0786 216 TAEPLIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYR--VFRRAVDVIGNVSL---SLFL 290 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcccc--ccHHHHHHHhhhHH---HHHH
Confidence 344444556666677777999999998888999999999887766666666642221 11233333333333 3444
Q ss_pred ccceeeccccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 046702 183 VPSLVILPLSVRDIPAASGLKICYIIFGGWFASLCVAGFT 222 (347)
Q Consensus 183 VPS~VgLpls~~~i~~~eglkI~ai~VvstliTL~vTa~v 222 (347)
.=++..+=+. -+..-++++++++.+.+++....+-++
T Consensus 291 amALmSlkLw---eL~~l~lpl~viL~vQ~i~m~lfa~fv 327 (404)
T COG0786 291 AMALMSLKLW---ELADLALPLLVILAVQTIVMALFAIFV 327 (404)
T ss_pred HHHHHHHHHH---HHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 355567788888888887776666444
No 31
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=22.66 E-value=4.7e+02 Score=30.20 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 046702 201 GLKICYIIFGGWFASLCVAGFTAIAVRKIVKTEMIDAEP 239 (347)
Q Consensus 201 glkI~ai~VvstliTL~vTa~v~~~l~r~~~te~~~~ep 239 (347)
+.-++.-+++||++|+.+.=.+...+.|..+.++++.|.
T Consensus 1004 ai~ii~GL~~St~ltL~~vP~ly~~~~~~~~~~~~~~~~ 1042 (1049)
T PRK15127 1004 GTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRKNEDIEH 1042 (1049)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 445556667888888888877777788776666666554
No 32
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=22.64 E-value=1.5e+02 Score=24.23 Aligned_cols=43 Identities=26% Similarity=0.445 Sum_probs=30.6
Q ss_pred ChhHHHHHHHHHHHHhhhc-c--CchhhhhhhhhhHHHHHHHHHcC
Q 046702 136 PSALFGMFCIFSILMILDS-T--IPDAATSLMSFFEPALLFIQRWL 178 (347)
Q Consensus 136 PgsViGMlLLFalLl~~~~-l--~~~~a~~~~~~iep~A~fLLrwL 178 (347)
=++.+||.+|-++.-.... + +.+......-++.|+++.+.|.|
T Consensus 29 vSsf~gm~iL~alIy~ft~wlt~g~e~vtglflflapacgliirfm 74 (80)
T PF10810_consen 29 VSSFFGMVILAALIYYFTMWLTGGNEIVTGLFLFLAPACGLIIRFM 74 (80)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHHHhccccceeeee
Confidence 3678999988776653322 2 44556677788899998888876
No 33
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=22.05 E-value=3.2e+02 Score=21.06 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 200 SGLKICYIIFGGWFASLCVAGFTAIAVRKI 229 (347)
Q Consensus 200 eglkI~ai~VvstliTL~vTa~v~~~l~r~ 229 (347)
|++.+.++-++-.++.|.+-.+++..+.+.
T Consensus 3 ~gl~i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 3 EGLQIMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555
No 34
>PLN02975 complex I subunit
Probab=21.53 E-value=2e+02 Score=24.54 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHHHHHhhhhccccCCCCchhhhhHHHHHHHHHHHHh
Q 046702 246 FSPTEVWAWSGVFLISFVAALFYPTALGTSARTCLPFLLASTVLGYMVG 294 (347)
Q Consensus 246 Fs~~e~~~W~~v~~~s~iv~~~~~~a~g~~~~~alPf~La~TVl~y~~g 294 (347)
|+..++..|.++.++++.+++.. +......-|-|-.++.+|++-|
T Consensus 26 fr~sDY~~~a~~ta~s~~~~~~~----~~~~~~~~~~mr~ag~iG~~gG 70 (97)
T PLN02975 26 FSALDYLRFATITGVSVTVGYLS----GIKPGIRGPSMVTGGLIGLMGG 70 (97)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH----ccCccccchHHHHHHHHHHhhh
Confidence 66778889998888788766442 2234455667788888887765
No 35
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=20.57 E-value=5.3e+02 Score=27.36 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhCCccCChhHHHHHHHHHHHHhhhc
Q 046702 117 ILVVEKLLKKAFVAAAIKFPSALFGMFCIFSILMILDS 154 (347)
Q Consensus 117 Ll~~ge~I~~~f~aa~IpfPgsViGMlLLFalLl~~~~ 154 (347)
+|.+|..+.+.+. +|+++.=|+++-+.|-...-
T Consensus 276 lf~~g~il~kf~~-----~P~~va~MIil~a~lk~~nl 308 (438)
T COG3493 276 LFMAGGILGKFIG-----LPGPVAFMIILVAILKAANL 308 (438)
T ss_pred HHHHHHHHHHhhc-----CCchHHHHHHHHHHHHHhCc
Confidence 4455777777663 78999999988888875544
Done!