Query 046702
Match_columns 347
No_of_seqs 120 out of 143
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 10.5 3.2E+02 0.011 19.1 3.9 34 200-233 8-41 (44)
2 2jwa_A Receptor tyrosine-prote 10.4 4.6E+02 0.016 18.3 4.8 30 203-232 12-41 (44)
3 1pfi_A Major coat protein of P 9.5 5E+02 0.017 18.3 4.6 27 202-228 19-45 (46)
4 2ks1_B Epidermal growth factor 7.9 2.9E+02 0.01 19.2 2.8 32 201-232 10-41 (44)
5 1afo_A Glycophorin A; integral 6.7 6.1E+02 0.021 17.5 3.9 33 196-228 7-39 (40)
6 2kfq_A FP1; protein, de novo p 6.2 2.2E+02 0.0075 16.1 1.3 14 28-41 16-29 (32)
7 1xio_A Anabaena sensory rhodop 5.1 7.7E+02 0.026 22.5 4.9 47 283-332 15-62 (261)
8 4dve_A Biotin transporter BIOY 4.7 1.5E+03 0.051 19.9 6.4 21 275-295 99-119 (198)
9 3ug9_A Archaeal-type opsin 1, 4.7 4.4E+02 0.015 25.4 3.1 23 283-306 79-101 (333)
10 2k1k_A Ephrin type-A receptor 4.6 6.7E+02 0.023 16.7 3.0 23 201-223 10-32 (38)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.54 E-value=3.2e+02 Score=19.09 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046702 200 SGLKICYIIFGGWFASLCVAGFTAIAVRKIVKTE 233 (347)
Q Consensus 200 eglkI~ai~VvstliTL~vTa~v~~~l~r~~~te 233 (347)
+...|++-+++|.++..++...+...+||+...+
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3445777778888877777777777777765443
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.36 E-value=4.6e+02 Score=18.34 Aligned_cols=30 Identities=7% Similarity=0.041 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046702 203 KICYIIFGGWFASLCVAGFTAIAVRKIVKT 232 (347)
Q Consensus 203 kI~ai~VvstliTL~vTa~v~~~l~r~~~t 232 (347)
..++..++|-++..++...+..++||+...
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 334555566444444444446667766443
No 3
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=9.48 E-value=5e+02 Score=18.25 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 202 LKICYIIFGGWFASLCVAGFTAIAVRK 228 (347)
Q Consensus 202 lkI~ai~VvstliTL~vTa~v~~~l~r 228 (347)
++=++--++|.++-++|++++...+||
T Consensus 19 m~si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 19 MKAIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455677888889999999988886
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.89 E-value=2.9e+02 Score=19.20 Aligned_cols=32 Identities=19% Similarity=0.025 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046702 201 GLKICYIIFGGWFASLCVAGFTAIAVRKIVKT 232 (347)
Q Consensus 201 glkI~ai~VvstliTL~vTa~v~~~l~r~~~t 232 (347)
...|++-+++|.++..++...+.-.+||+...
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 33456666777777666666666777765443
No 5
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=6.69 E-value=6.1e+02 Score=17.53 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=25.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046702 196 IPAASGLKICYIIFGGWFASLCVAGFTAIAVRK 228 (347)
Q Consensus 196 i~~~eglkI~ai~VvstliTL~vTa~v~~~l~r 228 (347)
....+...|+..++.|.+-+++.-+|..+.++|
T Consensus 7 fs~p~i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 7 FSEPEITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455577778888888888899999888776653
No 6
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=6.25 E-value=2.2e+02 Score=16.08 Aligned_cols=14 Identities=7% Similarity=-0.066 Sum_probs=9.6
Q ss_pred hhcccccccCCCcc
Q 046702 28 NLKQSHHRIHPRST 41 (347)
Q Consensus 28 ~~~~~~~~~~~~~~ 41 (347)
..++.|.|+|.+..
T Consensus 16 ~~L~~H~~~H~~~k 29 (32)
T 2kfq_A 16 DALSKHIKTAFIVV 29 (32)
T ss_dssp HTTSSSTTSSSSSS
T ss_pred HHHHHHHHHHccCC
Confidence 34568999987643
No 7
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=5.06 E-value=7.7e+02 Score=22.51 Aligned_cols=47 Identities=6% Similarity=-0.025 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhhhhhHHHHHHHHHH-HhhhcCCCchh
Q 046702 283 LLASTVLGYMVGSGLPSDVKKVFHPIICCALSADLAALA-FGYLSKSGLDP 332 (347)
Q Consensus 283 ~La~TVl~y~~g~~lP~~~kKvlHPIi~csl~t~l~a~~-~g~i~G~gl~~ 332 (347)
|+++|+.=|....+.|+++|+...-. ++++.+++.. +.+..|.|+.+
T Consensus 15 m~~atv~F~~~~~~v~~~~R~~~~~~---~lit~iAa~~Y~~Ma~~~G~~~ 62 (261)
T 1xio_A 15 MTIGALHFWSLSRNPRGVPQYEYLVA---MFIPIWSGLAYMAMAIDQGKVE 62 (261)
T ss_dssp HHHHHHHHHHHHTSCTTCCHHHHHHH---HHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhcccCCCcceeeehHH---HHHHHHHHHHHHHHHhCCCeee
Confidence 44444444666677777777664322 3333333333 55555655543
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=4.73 E-value=1.5e+03 Score=19.87 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=11.9
Q ss_pred CchhhhhHHHHHHHHHHHHhc
Q 046702 275 SARTCLPFLLASTVLGYMVGS 295 (347)
Q Consensus 275 ~~~~alPf~La~TVl~y~~g~ 295 (347)
+..|-.=|.+++-+.||+...
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~ 119 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKK 119 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666543
No 9
>3ug9_A Archaeal-type opsin 1, archaeal-type opsin 2; microbialrhodopsin, seven-transmembrane, light-gated cation membrane protein; HET: RET OLA; 2.30A {Chlamydomonas reinhardtii}
Probab=4.73 E-value=4.4e+02 Score=25.44 Aligned_cols=23 Identities=0% Similarity=-0.338 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCCCcccccchh
Q 046702 283 LLASTVLGYMVGSGLPSDVKKVFH 306 (347)
Q Consensus 283 ~La~TVl~y~~g~~lP~~~kKvlH 306 (347)
|+++|+.=++...|.|.+|| .+|
T Consensus 79 M~aatlfF~~~~~rv~~~wR-~~~ 101 (333)
T 3ug9_A 79 SALCLMFYGYQTWKSTCGWE-EIY 101 (333)
T ss_dssp HHHHHHHC--------CCHH-HHH
T ss_pred HHHHHHHHHHHHhcCCCCeE-EEe
Confidence 44455554666678999998 777
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=4.58 E-value=6.7e+02 Score=16.68 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046702 201 GLKICYIIFGGWFASLCVAGFTA 223 (347)
Q Consensus 201 glkI~ai~VvstliTL~vTa~v~ 223 (347)
+..|+.+++++.+...++++...
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHHHHHHHHH
Confidence 55666666655544444444443
Done!