Query 046702
Match_columns 347
No_of_seqs 120 out of 143
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 05:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046702.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046702hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dmda1 g.37.1.1 (A:34-61) Zin 9.1 21 0.0016 21.3 -0.8 12 28-39 17-28 (28)
2 d1srka_ g.37.1.1 (A:) Zinc fin 7.1 40 0.0029 20.8 -0.3 13 29-41 22-34 (35)
3 d1uaza_ f.13.1.1 (A:) Archaerh 6.3 4.9E+02 0.036 21.1 6.5 46 283-330 26-72 (236)
4 d3c7bb2 d.58.36.2 (B:4-122) Di 6.1 79 0.0058 24.5 1.0 12 298-309 9-20 (119)
5 d1znfa_ g.37.1.1 (A:) XFIN, th 5.1 82 0.006 18.2 0.4 9 31-39 17-25 (26)
6 d2ysca1 b.72.1.1 (A:8-33) Amyl 5.0 96 0.007 18.2 0.6 9 296-304 1-9 (26)
7 d2v4jb2 d.58.36.2 (B:2-135) Di 4.3 1.1E+02 0.0078 24.1 0.7 12 298-309 22-33 (134)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 4.0 5.3E+02 0.039 17.6 4.6 20 203-222 6-25 (158)
9 d1h2sa_ f.13.1.1 (A:) Sensory 3.8 5.3E+02 0.038 20.6 4.9 45 283-330 15-60 (225)
10 d1q90g_ f.23.26.1 (G:) PetG su 3.7 4.5E+02 0.033 15.5 3.3 19 204-222 9-27 (30)
No 1
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.09 E-value=21 Score=21.34 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=9.1
Q ss_pred hhcccccccCCC
Q 046702 28 NLKQSHHRIHPR 39 (347)
Q Consensus 28 ~~~~~~~~~~~~ 39 (347)
.++..|+|||.+
T Consensus 17 ssl~kh~rihs~ 28 (28)
T d2dmda1 17 SSLNKHLRIHSD 28 (28)
T ss_dssp HHHHHHHHHSCC
T ss_pred hhHhhhhhcccC
Confidence 456789999964
No 2
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.13 E-value=40 Score=20.78 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=9.9
Q ss_pred hcccccccCCCcc
Q 046702 29 LKQSHHRIHPRST 41 (347)
Q Consensus 29 ~~~~~~~~~~~~~ 41 (347)
.++.|+|+|.+++
T Consensus 22 ~L~~H~r~Ht~~~ 34 (35)
T d1srka_ 22 NCARHLKVHTDTL 34 (35)
T ss_dssp HHHHHHGGGTSCC
T ss_pred HHHHHccccCCcC
Confidence 3568999998764
No 3
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=6.26 E-value=4.9e+02 Score=21.14 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhhhhhHHHHHHHHHHHh-hhcCCCc
Q 046702 283 LLASTVLGYMVGSGLPSDVKKVFHPIICCALSADLAALAFG-YLSKSGL 330 (347)
Q Consensus 283 ~La~TVl~y~~g~~lP~~~kKvlHPIi~csl~t~l~a~~~g-~i~G~gl 330 (347)
|+++|+.=++...+.+++..|..|-+. ++++..+++..= +..|.|.
T Consensus 26 m~~~tv~f~~~~~~~~~~~~r~~~~~~--~lIt~IAa~~Y~~Ma~~~G~ 72 (236)
T d1uaza_ 26 MLIGTFYFIVKGWGVTDKEAREYYSIT--ILVPGIASAAYLSMFFGIGL 72 (236)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHH--HHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHccCCCCcceeeeeHH--HHHHHHHHHHHHHHHcCCCe
Confidence 444455445556677665666666543 444544444432 2344443
No 4
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.11 E-value=79 Score=24.51 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=10.9
Q ss_pred Ccccccchhhhh
Q 046702 298 PSDVKKVFHPII 309 (347)
Q Consensus 298 P~~~kKvlHPIi 309 (347)
|+.+++++||+|
T Consensus 9 pp~y~~~~ppvi 20 (119)
T d3c7bb2 9 PPYFRDLLHPVI 20 (119)
T ss_dssp SCCGGGGSCHHH
T ss_pred CCChHHhCCHHH
Confidence 788999999997
No 5
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=5.11 E-value=82 Score=18.19 Aligned_cols=9 Identities=33% Similarity=0.766 Sum_probs=6.9
Q ss_pred ccccccCCC
Q 046702 31 QSHHRIHPR 39 (347)
Q Consensus 31 ~~~~~~~~~ 39 (347)
..|+|+|-|
T Consensus 17 srhqrvhkn 25 (26)
T d1znfa_ 17 SRHQRVHKN 25 (26)
T ss_dssp HHHGGGTCC
T ss_pred HHHHHhhcc
Confidence 469999865
No 6
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.99 E-value=96 Score=18.15 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=6.9
Q ss_pred CCCcccccc
Q 046702 296 GLPSDVKKV 304 (347)
Q Consensus 296 ~lP~~~kKv 304 (347)
.+|++|||+
T Consensus 1 ~LPpGW~~i 9 (26)
T d2ysca1 1 GLPPGWRKI 9 (26)
T ss_dssp CCCTTEEEE
T ss_pred CcCccceee
Confidence 378889875
No 7
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=4.35 E-value=1.1e+02 Score=24.14 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=10.5
Q ss_pred Ccccccchhhhh
Q 046702 298 PSDVKKVFHPII 309 (347)
Q Consensus 298 P~~~kKvlHPIi 309 (347)
|+.+++++||+|
T Consensus 22 P~~y~~~lppvi 33 (134)
T d2v4jb2 22 PRKFDEFFPPVI 33 (134)
T ss_dssp SCCTTTTCCHHH
T ss_pred CCCHHHhCCHHH
Confidence 778999999987
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=4.02 E-value=5.3e+02 Score=17.57 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046702 203 KICYIIFGGWFASLCVAGFT 222 (347)
Q Consensus 203 kI~ai~VvstliTL~vTa~v 222 (347)
.++++.++|.++++++-.|.
T Consensus 6 LlVViaIIgILaaia~P~~~ 25 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQ 25 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999888775
No 9
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=3.83 E-value=5.3e+02 Score=20.58 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhhhhhHHHHHHHHHHH-hhhcCCCc
Q 046702 283 LLASTVLGYMVGSGLPSDVKKVFHPIICCALSADLAALAF-GYLSKSGL 330 (347)
Q Consensus 283 ~La~TVl~y~~g~~lP~~~kKvlHPIi~csl~t~l~a~~~-g~i~G~gl 330 (347)
|+++|+.-+...++.|+..++. | ++.++++-+++... .+..|.+.
T Consensus 15 m~~~tv~F~~~~~~~~~~~r~~-~--~~~~~It~iAa~~Y~~m~~g~g~ 60 (225)
T d1h2sa_ 15 MLVGTLAFAWAGRDAGSGERRY-Y--VTLVGISGIAAVAYVVMALGVGW 60 (225)
T ss_dssp HHHHHHHHHHHTTTCCTTTHHH-H--HHHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHcCCCCccchh-h--HHHHHHHHHHHHHHHHHHhCCCc
Confidence 5556665455666677766553 3 22233444443332 22345554
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.73 E-value=4.5e+02 Score=15.50 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046702 204 ICYIIFGGWFASLCVAGFT 222 (347)
Q Consensus 204 I~ai~VvstliTL~vTa~v 222 (347)
|+.-++--|++.+.+|+|.
T Consensus 9 ivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 9 IVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3444455677788888875
Done!