Query 046709
Match_columns 109
No_of_seqs 8 out of 10
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 05:51:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kkj_A Amine oxidase, flavin-c 82.9 0.19 6.6E-06 30.2 -0.4 21 55-75 316-336 (336)
2 3ckm_A YRAM (HI1655), LPOA; pe 66.1 1.6 5.4E-05 31.0 0.5 7 69-75 321-327 (327)
3 2i68_A Protein EMRE; transmemb 62.2 1.2 4.2E-05 30.9 -0.6 13 9-21 64-76 (137)
4 2i87_A D-alanine-D-alanine lig 53.4 2.5 8.6E-05 31.1 -0.2 21 55-75 344-364 (364)
5 3nk4_C ZONA pellucida 3; ferti 52.5 4 0.00014 23.6 0.6 10 66-75 21-30 (30)
6 3s3l_A CERJ; acyltransferase, 48.9 6.6 0.00023 29.6 1.4 58 13-75 300-357 (357)
7 4fc4_A Nitrite transporter NIR 46.4 3.8 0.00013 31.3 -0.2 31 41-75 231-261 (261)
8 1tvm_A PTS system, galactitol- 40.6 8.9 0.0003 25.0 0.9 6 77-82 27-32 (113)
9 4fu0_A D-alanine--D-alanine li 39.4 6 0.0002 29.3 -0.1 17 59-75 341-357 (357)
10 2wa2_A Non-structural protein 39.3 6.1 0.00021 29.1 -0.1 16 69-84 2-17 (276)
11 4f3p_A Glutamine-binding perip 38.6 15 0.0005 23.9 1.7 34 71-106 3-37 (249)
12 2uwf_A Endoxylanase, alkaline 37.2 9.5 0.00032 29.5 0.7 22 54-75 335-356 (356)
13 2asy_A Protein YDHR precursor; 37.1 10 0.00036 27.1 0.9 34 68-103 3-36 (123)
14 4frw_A Poliovirus receptor-rel 35.9 6.4 0.00022 23.9 -0.4 18 58-75 201-218 (218)
15 3v6g_A Probable transcriptiona 35.6 9.8 0.00034 25.1 0.5 20 56-75 189-208 (208)
16 3c9a_A Protein giant-lens; arg 34.4 9.8 0.00033 30.0 0.4 32 24-75 192-223 (223)
17 3aqp_A Probable secdf protein- 33.7 3 0.0001 35.2 -2.8 32 44-75 709-741 (741)
18 3o07_A Pyridoxine biosynthesis 33.1 10 0.00034 30.5 0.2 14 70-83 2-15 (291)
19 3v5u_A Uncharacterized membran 32.3 9.5 0.00032 29.5 0.0 9 67-75 311-319 (320)
20 3ct8_A Protein BH2160, putativ 29.8 6.6 0.00023 24.7 -1.1 29 70-98 7-37 (146)
21 3kpa_A Probable ubiquitin fold 29.5 25 0.00085 26.7 1.9 33 76-108 69-101 (168)
22 3tyj_A BCLA protein; exosporiu 28.9 12 0.0004 28.1 0.0 15 69-83 4-20 (155)
23 3tef_A VCTP, iron(III) ABC tra 28.6 12 0.00042 25.4 0.0 11 65-75 282-292 (292)
24 4f27_A Clumping factor B; DEV- 28.1 12 0.00042 27.4 0.0 8 69-76 4-11 (363)
25 3rh0_A Arsenate reductase; oxi 27.8 13 0.00046 25.6 0.1 7 77-83 26-32 (148)
26 3qsz_A STAR-related lipid tran 27.8 13 0.00044 24.6 0.0 15 26-40 119-133 (189)
27 2qc7_A ERP31, ERP28, endoplasm 27.6 13 0.00044 27.2 0.0 13 63-75 228-240 (240)
28 2fh5_A Signal recognition part 27.6 17 0.00058 27.0 0.7 16 69-84 2-25 (185)
29 1e5e_A MGL, methionine gamma-l 27.4 14 0.00049 27.2 0.2 16 60-75 389-404 (404)
30 2es4_D Lipase chaperone; prote 26.5 14 0.00047 29.2 0.0 13 81-93 16-28 (332)
31 4ecj_A Glutathione S-transfera 25.9 14 0.00049 25.1 0.0 13 63-75 224-236 (244)
32 2ddi_A WAP, follistatin/kazal, 25.7 19 0.00066 22.4 0.6 12 64-75 59-70 (70)
33 2j9o_A TLL2115 protein; penici 25.7 15 0.0005 26.3 0.0 7 69-75 292-298 (298)
34 2v2g_A Peroxiredoxin 6; oxidor 25.3 15 0.00051 26.3 0.0 6 23-28 108-113 (233)
35 2psd_A Renilla-luciferin 2-mon 25.1 15 0.00051 25.4 -0.0 12 64-75 307-318 (318)
36 3quf_A Extracellular solute-bi 24.7 23 0.00079 25.2 0.9 8 69-76 4-11 (414)
37 2wii_C H factor 1, complement 24.7 16 0.00053 26.4 0.0 8 68-75 270-277 (277)
38 3sd7_A Putative phosphatase; s 24.5 16 0.00054 23.6 0.0 18 70-87 2-19 (240)
39 2b3f_A Glucose-binding protein 24.2 17 0.00058 26.1 0.1 11 65-75 390-400 (400)
40 1vf7_A Multidrug resistance pr 24.1 16 0.00056 27.2 0.0 19 57-75 351-369 (369)
41 2pmi_A Negative RE, cyclin-dep 23.4 18 0.00062 25.2 0.1 15 49-63 273-287 (317)
42 2gha_A Maltose ABC transporter 23.4 14 0.0005 26.2 -0.4 14 62-75 369-382 (382)
43 4hw8_A Bacterial extracellular 23.4 17 0.00058 26.2 0.0 8 69-76 4-11 (420)
44 3rqt_A Putative uncharacterize 22.6 18 0.00062 27.7 0.0 28 69-104 4-32 (486)
45 2kln_A Probable sulphate-trans 22.5 22 0.00074 22.4 0.3 16 60-75 115-130 (130)
46 3lid_A Putative sensory BOX/gg 22.3 41 0.0014 24.2 1.9 36 35-75 260-295 (295)
47 1n1c_A TORA specific chaperone 22.2 24 0.00083 24.6 0.6 32 44-75 184-217 (217)
48 2ze6_A Isopentenyl transferase 22.0 19 0.00065 25.4 0.0 9 67-75 245-253 (253)
49 1pko_A Myelin oligodendrocyte 21.7 19 0.00066 21.8 0.0 12 64-75 128-139 (139)
50 3d5n_A Q97W15_sulso; NESG, SSR 21.5 20 0.00067 24.1 0.0 14 62-75 184-197 (197)
51 2bt9_A Lectin; sugar recogniti 21.5 15 0.0005 24.8 -0.6 43 51-95 5-47 (90)
52 3sv0_A Casein kinase I-like; t 21.2 20 0.00069 27.9 0.0 25 51-75 459-483 (483)
53 3okg_A Restriction endonucleas 21.0 20 0.0007 25.6 0.0 9 69-77 2-10 (412)
54 2lkg_A Acetylcholine receptor; 20.9 27 0.00091 24.3 0.6 14 69-82 2-15 (140)
55 2fek_A Low molecular weight pr 20.8 22 0.00075 24.9 0.1 13 77-95 28-40 (167)
56 3t0v_A Immunoglobulin variable 20.4 21 0.00073 22.5 0.0 7 69-75 117-123 (123)
57 3k7m_X 6-hydroxy-L-nicotine ox 20.4 22 0.00075 25.6 0.0 14 61-74 417-430 (431)
58 2oln_A NIKD protein; flavoprot 20.0 35 0.0012 24.3 1.1 23 53-75 375-397 (397)
No 1
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=82.89 E-value=0.19 Score=30.17 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=10.5
Q ss_pred ceeccchhhhhhhcccccccc
Q 046709 55 TWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 55 tWDvSrka~~a~~rdhh~h~h 75 (109)
.|...++..+++..|||+|+|
T Consensus 316 G~~aA~~I~~~L~~e~~~~~~ 336 (336)
T 3kkj_A 316 GQEAARRLLEHLQLEHHHHHH 336 (336)
T ss_dssp HHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHhhccCCccCC
Confidence 456677778888889998876
No 2
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=66.10 E-value=1.6 Score=31.00 Aligned_cols=7 Identities=71% Similarity=1.327 Sum_probs=0.0
Q ss_pred ccccccc
Q 046709 69 DHHVHNH 75 (109)
Q Consensus 69 dhh~h~h 75 (109)
|||||+|
T Consensus 321 d~~~~~~ 327 (327)
T 3ckm_A 321 DHHHHHH 327 (327)
T ss_dssp -------
T ss_pred cccccCC
Confidence 8888876
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=62.21 E-value=1.2 Score=30.85 Aligned_cols=13 Identities=0% Similarity=0.255 Sum_probs=7.4
Q ss_pred hchhhHhHHHHHH
Q 046709 9 GNLTTIYVAVIAG 21 (109)
Q Consensus 9 ~NlttIyvavia~ 21 (109)
.++..+++++++.
T Consensus 64 ~~l~pv~~~l~g~ 76 (137)
T 2i68_A 64 SGVGIVLISLLSW 76 (137)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666655554
No 4
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=53.44 E-value=2.5 Score=31.13 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=11.5
Q ss_pred ceeccchhhhhhhcccccccc
Q 046709 55 TWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 55 tWDvSrka~~a~~rdhh~h~h 75 (109)
.+.-.|+-++.+.|.||+|+|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T 2i87_A 344 RHQDKQKNKYKIDRSHHHHHH 364 (364)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred hhhhhccceecccccccccCC
Confidence 455567888999999998887
No 5
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=52.48 E-value=4 Score=23.56 Aligned_cols=10 Identities=60% Similarity=1.075 Sum_probs=7.5
Q ss_pred hhcccccccc
Q 046709 66 ISRDHHVHNH 75 (109)
Q Consensus 66 ~~rdhh~h~h 75 (109)
+|.|||+|+|
T Consensus 21 lsadhhhhhh 30 (30)
T 3nk4_C 21 LSADHHHHHH 30 (30)
T ss_dssp BCSCTTCCCC
T ss_pred ecccccccCC
Confidence 4678888876
No 6
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Probab=48.89 E-value=6.6 Score=29.64 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=20.9
Q ss_pred hHhHHHHHHhhhhhceecceecceEEEEeehhHHHhhhhhhhceeccchhhhhhhcccccccc
Q 046709 13 TIYVAVIAGIKAYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 13 tIyvavia~ikAYg~~~GRsFSg~fVlivSt~~V~liLi~TLtWDvSrka~~a~~rdhh~h~h 75 (109)
+|++++--.++. ||-=.|-.|+.++.-.-.-.-...|.|.-.---...=+|.||+|+|
T Consensus 300 sipl~L~~~~~~-----g~l~~Gd~vll~~fG~G~t~~a~ll~~~~~p~~~~~~~~~~~~~~~ 357 (357)
T 3s3l_A 300 DQYAGLAHLVEN-----ALVQPGDRVLLFGGGAGYTCTAAVVEILRMPAQCMRGSRSHHHHHH 357 (357)
T ss_dssp HHHHHHHHHHHT-----TCCCTTCEEEEECCBTTTEEEEEEEEECCCC---------------
T ss_pred HHHHHHHHHHHc-----CCCCCCCEEEEEEEchhhhheeeeEEeccCCCCCCCCcccccccCC
Confidence 466666666554 4444566666665543211222334553222223356788888876
No 7
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=46.41 E-value=3.8 Score=31.26 Aligned_cols=31 Identities=39% Similarity=0.722 Sum_probs=14.1
Q ss_pred eehhHHHhhhhhhhceeccchhhhhhhcccccccc
Q 046709 41 LSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 41 vSt~~V~liLi~TLtWDvSrka~~a~~rdhh~h~h 75 (109)
+.-.+=|.+++|.+-|=..+|- ..|||+|+|
T Consensus 231 lGNiiGG~~fvgl~y~~~~~~~----~~~~~~~~~ 261 (261)
T 4fc4_A 231 LGNTLSGVVFMGLGYWYATPKS----ELEHHHHHH 261 (261)
T ss_dssp HHHHHHHHTTTHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHccc----cccccccCC
Confidence 3344557788999999888776 347777765
No 8
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=40.60 E-value=8.9 Score=24.98 Aligned_cols=6 Identities=33% Similarity=1.104 Sum_probs=3.4
Q ss_pred ccccce
Q 046709 77 MCKGGI 82 (109)
Q Consensus 77 ~CkGGI 82 (109)
.|-.|+
T Consensus 27 vC~sG~ 32 (113)
T 1tvm_A 27 ACGGAV 32 (113)
T ss_dssp ESCSCS
T ss_pred ECCCCH
Confidence 566654
No 9
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=39.41 E-value=6 Score=29.32 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=5.0
Q ss_pred cchhhhhhhcccccccc
Q 046709 59 SQKAVYAISRDHHVHNH 75 (109)
Q Consensus 59 Srka~~a~~rdhh~h~h 75 (109)
.|=...|+-|+||+|+|
T Consensus 341 ~~li~~aler~~~~~~~ 357 (357)
T 4fu0_A 341 DKLIGLYVELEHHHHHH 357 (357)
T ss_dssp HHHHHTTC---------
T ss_pred HHHHHHHhcccccccCC
Confidence 34456789999999987
No 10
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=39.27 E-value=6.1 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=2.8
Q ss_pred ccccccccccccceee
Q 046709 69 DHHVHNHEMCKGGICW 84 (109)
Q Consensus 69 dhh~h~h~~CkGGICW 84 (109)
-||+|+|.+|..|.=|
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (276)
T 2wa2_A 2 AHHHHHHGICSSAPTL 17 (276)
T ss_dssp -----------CHHHH
T ss_pred CccccccccccccchH
Confidence 3788889888877543
No 11
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=38.59 E-value=15 Score=23.90 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=8.0
Q ss_pred ccccccccccceeeeeccccCCcceeeeecC-CCCCC
Q 046709 71 HVHNHEMCKGGICWHGVAVRSPASQVRFRLP-QQVPY 106 (109)
Q Consensus 71 h~h~h~~CkGGICWHGVAvrSpASQvrfrLP-q~~P~ 106 (109)
|+|+|.|=.-|-|=||-+. .+..+|+-.. ...||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~~~~P~ 37 (249)
T 4f3p_A 3 HHHHHHMGTLEAQTQGPGS--MAKELVVGTDTSFMPF 37 (249)
T ss_dssp -----------------------CCEEEEEESCBTTT
T ss_pred cccccccchhhhhhcCCcc--cCceEEEEeCCCCCCe
Confidence 4455666666777777553 3445666665 55776
No 12
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*
Probab=37.19 E-value=9.5 Score=29.50 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=17.5
Q ss_pred hceeccchhhhhhhcccccccc
Q 046709 54 LTWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 54 LtWDvSrka~~a~~rdhh~h~h 75 (109)
+.-|.++|.+|.--.+||+|+|
T Consensus 335 fd~~~~pKpAy~~~~~~~~~~~ 356 (356)
T 2uwf_A 335 FDHNYRVKPAYWRIIDHHHHHH 356 (356)
T ss_dssp BCTTSBBCHHHHHHHSCCCCCC
T ss_pred ECCCCCCCHHHHHHHHhhccCC
Confidence 3456788988888889988876
No 13
>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} SCOP: d.58.4.12
Probab=37.09 E-value=10 Score=27.15 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=9.7
Q ss_pred cccccccccccccceeeeeccccCCcceeeeecCCC
Q 046709 68 RDHHVHNHEMCKGGICWHGVAVRSPASQVRFRLPQQ 103 (109)
Q Consensus 68 rdhh~h~h~~CkGGICWHGVAvrSpASQvrfrLPq~ 103 (109)
.+||+|+|..-+...-+.++ -+-==||+|++|--
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--m~~lLqVdF~~~gP 36 (123)
T 2asy_A 3 TSHHHHHHSSGRENLYFQGH--MATLLQLHFAFNGP 36 (123)
T ss_dssp ----------------------CCEEEEEEEESSSS
T ss_pred cccccccccccchheehhhe--eeEeEEEeecCCCc
Confidence 46788888766666667766 23356999999864
No 14
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=35.89 E-value=6.4 Score=23.95 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=10.1
Q ss_pred ccchhhhhhhcccccccc
Q 046709 58 VSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 58 vSrka~~a~~rdhh~h~h 75 (109)
-+++++.-+...||+|+|
T Consensus 201 ~~~~~t~~v~V~~~~~~~ 218 (218)
T 4frw_A 201 QDQRITHILHVSHHHHHH 218 (218)
T ss_dssp SCEEEEEECCEECCC---
T ss_pred eEEEEEEEEEECcCccCC
Confidence 345666677777877766
No 15
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=35.65 E-value=9.8 Score=25.12 Aligned_cols=20 Identities=40% Similarity=0.543 Sum_probs=0.0
Q ss_pred eeccchhhhhhhcccccccc
Q 046709 56 WDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 56 WDvSrka~~a~~rdhh~h~h 75 (109)
=++.|.+...-..|||+|+|
T Consensus 189 ~~~~~~a~~gR~pD~~~~~~ 208 (208)
T 3v6g_A 189 REVGQSAHAGRTPDHHHHHH 208 (208)
T ss_dssp --------------------
T ss_pred cccCCCccccCCCccccccC
Confidence 34556666666679998876
No 16
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor, developmental protein, glycoprotein, secreted, sensory transduction, vision; 1.60A {Drosophila melanogaster} PDB: 3cgu_A
Probab=34.42 E-value=9.8 Score=29.97 Aligned_cols=32 Identities=31% Similarity=0.625 Sum_probs=17.7
Q ss_pred hhhceecceecceEEEEeehhHHHhhhhhhhceeccchhhhhhhcccccccc
Q 046709 24 AYGLVTGRSFSSAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 24 AYg~~~GRsFSg~fVlivSt~~V~liLi~TLtWDvSrka~~a~~rdhh~h~h 75 (109)
.+|.+.|+||-+--+=.- ..|++..|||+|+|
T Consensus 192 ~~g~~~~~~~~~~~i~ty--------------------sgyc~~~~~~~~~~ 223 (223)
T 3c9a_A 192 QSGVIAGESFLEDNIQTY--------------------SGYCMANDHHHHHH 223 (223)
T ss_dssp STTEEEEEECSSTTEEEE--------------------EEECEECC------
T ss_pred CCCccchhhhhhhhhhee--------------------eeeEeccccccccC
Confidence 478888888865332222 35899999998876
No 17
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=33.66 E-value=3 Score=35.23 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=6.3
Q ss_pred hHHHhhhhhhhceec-cchhhhhhhcccccccc
Q 046709 44 TIVGVVLIGTLTWDV-SQKAVYAISRDHHVHNH 75 (109)
Q Consensus 44 ~~V~liLi~TLtWDv-Srka~~a~~rdhh~h~h 75 (109)
+...++++-.|.--. .|+-.+.-+..||||+|
T Consensus 709 ~~~sl~l~Pal~~~~~~~~~~~~~~~~~~~~~~ 741 (741)
T 3aqp_A 709 TYSSIYVVSALVVAWKNRRKAQEASKAHHHHHH 741 (741)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhhhcccccCccccccccCC
Confidence 334444444332222 24444455566776665
No 18
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=33.09 E-value=10 Score=30.52 Aligned_cols=14 Identities=57% Similarity=1.037 Sum_probs=4.8
Q ss_pred ccccccccccccee
Q 046709 70 HHVHNHEMCKGGIC 83 (109)
Q Consensus 70 hh~h~h~~CkGGIC 83 (109)
||+|+|.|-|||.-
T Consensus 2 ~~~~~~~~~~~~vi 15 (291)
T 3o07_A 2 HHHHHHGMLKGGVI 15 (291)
T ss_dssp --------CTTCEE
T ss_pred CcccccccccCCee
Confidence 78889999999964
No 19
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=32.31 E-value=9.5 Score=29.46 Aligned_cols=9 Identities=67% Similarity=1.132 Sum_probs=0.0
Q ss_pred hcccccccc
Q 046709 67 SRDHHVHNH 75 (109)
Q Consensus 67 ~rdhh~h~h 75 (109)
+|+||||+|
T Consensus 311 ~~~~~~~~~ 319 (320)
T 3v5u_A 311 SRSHHHHHH 319 (320)
T ss_dssp ---------
T ss_pred ccccccccC
Confidence 678887776
No 20
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=29.77 E-value=6.6 Score=24.70 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=14.5
Q ss_pred ccccccc--ccccceeeeeccccCCcceeee
Q 046709 70 HHVHNHE--MCKGGICWHGVAVRSPASQVRF 98 (109)
Q Consensus 70 hh~h~h~--~CkGGICWHGVAvrSpASQvrf 98 (109)
||+|+|| +-..++.|=+..++.+..-.+|
T Consensus 7 ~~~~~~~~~~~~~~i~hv~l~v~Dl~~a~~F 37 (146)
T 3ct8_A 7 HHHHHHENLYFQGMLHHVEINVDHLEESIAF 37 (146)
T ss_dssp -------CTTTTTSCCEEEEEESCHHHHHHH
T ss_pred cccccccccccccceeEEEEEeCCHHHHHHH
Confidence 5555565 5666788777777766554444
No 21
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=29.51 E-value=25 Score=26.66 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=25.1
Q ss_pred cccccceeeeeccccCCcceeeeecCCCCCCCC
Q 046709 76 EMCKGGICWHGVAVRSPASQVRFRLPQQVPYGA 108 (109)
Q Consensus 76 ~~CkGGICWHGVAvrSpASQvrfrLPq~~P~~~ 108 (109)
+..--|.||+=-...-=-=++.|.+|...|..|
T Consensus 69 GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tP 101 (168)
T 3kpa_A 69 GTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAP 101 (168)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEECCTTTTTSC
T ss_pred CCcccCccceeeccceeEEEEEEeCCccCCCCC
Confidence 355578899876666566689999999999765
No 22
>3tyj_A BCLA protein; exosporium, protein binding; 2.15A {Bacillus anthracis} PDB: 3twi_A
Probab=28.89 E-value=12 Score=28.06 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=0.5
Q ss_pred cccccccc--cccccee
Q 046709 69 DHHVHNHE--MCKGGIC 83 (109)
Q Consensus 69 dhh~h~h~--~CkGGIC 83 (109)
+||+|+|| +-.||--
T Consensus 4 ~~~~~~~~~~~~~~~~s 20 (155)
T 3tyj_A 4 SHHHHHHENLYFQGGPS 20 (155)
T ss_dssp ----------------C
T ss_pred ccccccccceeeccCCC
Confidence 57777777 7778765
No 23
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding protein; siderophore-binding protein, transport protein; 1.70A {Vibrio cholerae}
Probab=28.55 E-value=12 Score=25.43 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=0.0
Q ss_pred hhhcccccccc
Q 046709 65 AISRDHHVHNH 75 (109)
Q Consensus 65 a~~rdhh~h~h 75 (109)
-+.-|||||+|
T Consensus 282 g~~~~~~~~~~ 292 (292)
T 3tef_A 282 GMQLEHHHHHH 292 (292)
T ss_dssp -----------
T ss_pred chhhhhcccCC
Confidence 34458888876
No 24
>4f27_A Clumping factor B; DEV-IGG fold, protein-peptide complex, fibronogen, cell SURF adhesion-blood clotting complex; 1.92A {Staphylococcus aureus} PDB: 4f20_A 4f24_A 4f1z_A 3au0_A 3at0_A 3asw_A
Probab=28.12 E-value=12 Score=27.40 Aligned_cols=8 Identities=63% Similarity=1.136 Sum_probs=0.0
Q ss_pred cccccccc
Q 046709 69 DHHVHNHE 76 (109)
Q Consensus 69 dhh~h~h~ 76 (109)
.||||+|+
T Consensus 4 ~~~~~~~~ 11 (363)
T 4f27_A 4 SHHHHHHE 11 (363)
T ss_dssp --------
T ss_pred cccccccc
Confidence 57777776
No 25
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=27.81 E-value=13 Score=25.65 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=6.3
Q ss_pred cccccee
Q 046709 77 MCKGGIC 83 (109)
Q Consensus 77 ~CkGGIC 83 (109)
.|.|.||
T Consensus 26 VC~gN~c 32 (148)
T 3rh0_A 26 VCVGNGG 32 (148)
T ss_dssp EESSSSS
T ss_pred ECCCchh
Confidence 7999999
No 26
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=27.75 E-value=13 Score=24.63 Aligned_cols=15 Identities=20% Similarity=0.122 Sum_probs=9.3
Q ss_pred hceecceecceEEEE
Q 046709 26 GLVTGRSFSSAIVLI 40 (109)
Q Consensus 26 g~~~GRsFSg~fVli 40 (109)
|++-++.+.|+|++.
T Consensus 119 ~~VR~~~~~~~~~i~ 133 (189)
T 3qsz_A 119 GKVRIPRAKGQWTLV 133 (189)
T ss_dssp TSEECCCEEEEEEEE
T ss_pred CeEEeeEeeEEEEEE
Confidence 455566666776654
No 27
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=27.62 E-value=13 Score=27.22 Aligned_cols=13 Identities=46% Similarity=0.521 Sum_probs=0.0
Q ss_pred hhhhhcccccccc
Q 046709 63 VYAISRDHHVHNH 75 (109)
Q Consensus 63 ~~a~~rdhh~h~h 75 (109)
.+.-+|.||+|+|
T Consensus 228 ~~~~~~~~~~~~~ 240 (240)
T 2qc7_A 228 EELGSRSHHHHHH 240 (240)
T ss_dssp -------------
T ss_pred hhcccccccccCC
Confidence 3556788887776
No 28
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=27.56 E-value=17 Score=27.02 Aligned_cols=16 Identities=56% Similarity=1.282 Sum_probs=7.5
Q ss_pred cccccccccc-------cccee-e
Q 046709 69 DHHVHNHEMC-------KGGIC-W 84 (109)
Q Consensus 69 dhh~h~h~~C-------kGGIC-W 84 (109)
.||+|+|.|- |||++ |
T Consensus 2 ~~~~~~~~~~D~~~IfTkGGvVLW 25 (185)
T 2fh5_A 2 SHHHHHHSMVDFFTIFSKGGLVLW 25 (185)
T ss_dssp ------CCSCSEEEEEETTSBEEE
T ss_pred CcccccccceeEEEEEeCCeEEEE
Confidence 4777777754 89987 5
No 29
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=27.43 E-value=14 Score=27.19 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=7.6
Q ss_pred chhhhhhhcccccccc
Q 046709 60 QKAVYAISRDHHVHNH 75 (109)
Q Consensus 60 rka~~a~~rdhh~h~h 75 (109)
+++...+-|.||+|+|
T Consensus 389 ~~al~~~~~~~~~~~~ 404 (404)
T 1e5e_A 389 KQGLDALLRSHHHHHH 404 (404)
T ss_dssp HHHHHHHHCC------
T ss_pred HHHHHHHHHhccccCC
Confidence 4677788889988876
No 30
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=26.51 E-value=14 Score=29.24 Aligned_cols=13 Identities=38% Similarity=0.097 Sum_probs=0.0
Q ss_pred ceeeeeccccCCc
Q 046709 81 GICWHGVAVRSPA 93 (109)
Q Consensus 81 GICWHGVAvrSpA 93 (109)
=+-||++..-|||
T Consensus 16 ~~~~~~~~~~~~~ 28 (332)
T 2es4_D 16 IEGRHMPAAPSPA 28 (332)
T ss_dssp -------------
T ss_pred eeeeecCCCCccC
Confidence 3579988776654
No 31
>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*
Probab=25.86 E-value=14 Score=25.12 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=0.0
Q ss_pred hhhhhcccccccc
Q 046709 63 VYAISRDHHVHNH 75 (109)
Q Consensus 63 ~~a~~rdhh~h~h 75 (109)
+...+..||+|+|
T Consensus 224 ~~~~~~~~~~~~~ 236 (244)
T 4ecj_A 224 ENLYFQSHHHHHH 236 (244)
T ss_dssp -------------
T ss_pred hcccccccccccc
Confidence 3344456666665
No 32
>2ddi_A WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1; kunitz domain, protein binding; NMR {Homo sapiens} PDB: 2ddj_A
Probab=25.72 E-value=19 Score=22.45 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=8.3
Q ss_pred hhhhcccccccc
Q 046709 64 YAISRDHHVHNH 75 (109)
Q Consensus 64 ~a~~rdhh~h~h 75 (109)
.+..+|||+|+|
T Consensus 59 ~C~~~~~~~~~~ 70 (70)
T 2ddi_A 59 ACPVVDHHHHHH 70 (70)
T ss_dssp HSCCCCCCCSCC
T ss_pred HccCcCccccCC
Confidence 355678888765
No 33
>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioestera DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A*
Probab=25.70 E-value=15 Score=26.34 Aligned_cols=7 Identities=71% Similarity=1.327 Sum_probs=0.0
Q ss_pred ccccccc
Q 046709 69 DHHVHNH 75 (109)
Q Consensus 69 dhh~h~h 75 (109)
|||+|+|
T Consensus 292 ~~~~~~~ 298 (298)
T 2j9o_A 292 DHHHHHH 298 (298)
T ss_dssp -------
T ss_pred hccccCC
Confidence 7887776
No 34
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=25.26 E-value=15 Score=26.33 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=3.6
Q ss_pred hhhhce
Q 046709 23 KAYGLV 28 (109)
Q Consensus 23 kAYg~~ 28 (109)
++||+.
T Consensus 108 ~~ygv~ 113 (233)
T 2v2g_A 108 VKLGMV 113 (233)
T ss_dssp HHTTCE
T ss_pred HHhCCc
Confidence 566665
No 35
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Probab=25.06 E-value=15 Score=25.40 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=0.4
Q ss_pred hhhhcccccccc
Q 046709 64 YAISRDHHVHNH 75 (109)
Q Consensus 64 ~a~~rdhh~h~h 75 (109)
..-++|||+|+|
T Consensus 307 ~~~~~~~~~~~~ 318 (318)
T 2psd_A 307 KNEQVDHHHHHH 318 (318)
T ss_dssp C-----------
T ss_pred ccccccccccCC
Confidence 344557776655
No 36
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=24.74 E-value=23 Score=25.24 Aligned_cols=8 Identities=50% Similarity=0.995 Sum_probs=0.0
Q ss_pred cccccccc
Q 046709 69 DHHVHNHE 76 (109)
Q Consensus 69 dhh~h~h~ 76 (109)
.||||+|.
T Consensus 4 ~~~~~~~~ 11 (414)
T 3quf_A 4 SHHHHHHS 11 (414)
T ss_dssp --------
T ss_pred cccccccc
Confidence 46666665
No 37
>2wii_C H factor 1, complement factor H; immune system, sushi, secreted, polymorphism, glycoprotein, complement system, complement pathway, immune response; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A
Probab=24.66 E-value=16 Score=26.41 Aligned_cols=8 Identities=63% Similarity=1.078 Sum_probs=0.0
Q ss_pred cccccccc
Q 046709 68 RDHHVHNH 75 (109)
Q Consensus 68 rdhh~h~h 75 (109)
.|||+|+|
T Consensus 270 ~~~~~~~~ 277 (277)
T 2wii_C 270 VDHHHHHH 277 (277)
T ss_dssp --------
T ss_pred hcccccCC
Confidence 37777766
No 38
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=24.51 E-value=16 Score=23.62 Aligned_cols=18 Identities=22% Similarity=0.010 Sum_probs=0.0
Q ss_pred cccccccccccceeeeec
Q 046709 70 HHVHNHEMCKGGICWHGV 87 (109)
Q Consensus 70 hh~h~h~~CkGGICWHGV 87 (109)
||+|+|..-|.=+||--.
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (240)
T 3sd7_A 2 HHHHHHSSGVDLGTENLY 19 (240)
T ss_dssp ------------------
T ss_pred CcccccccccccCcccch
Confidence 677777777777777543
No 39
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=24.17 E-value=17 Score=26.12 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=1.3
Q ss_pred hhhcccccccc
Q 046709 65 AISRDHHVHNH 75 (109)
Q Consensus 65 a~~rdhh~h~h 75 (109)
-.-|.||||+|
T Consensus 390 ~~~~~~~~~~~ 400 (400)
T 2b3f_A 390 GRLGQHHHHHH 400 (400)
T ss_dssp TCC--------
T ss_pred cccccccccCC
Confidence 34456666665
No 40
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=24.10 E-value=16 Score=27.17 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=0.0
Q ss_pred eccchhhhhhhcccccccc
Q 046709 57 DVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 57 DvSrka~~a~~rdhh~h~h 75 (109)
|.+.....+.+..||||+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~ 369 (369)
T 1vf7_A 351 KADAAPAKTDSKGHHHHHH 369 (369)
T ss_dssp -------------------
T ss_pred ccccCccccCcccccccCC
Confidence 4455556778888888876
No 41
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=23.41 E-value=18 Score=25.17 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=9.6
Q ss_pred hhhhhhceeccchhh
Q 046709 49 VLIGTLTWDVSQKAV 63 (109)
Q Consensus 49 iLi~TLtWDvSrka~ 63 (109)
++-..|.+|-+++.+
T Consensus 273 li~~~L~~dP~~Rpt 287 (317)
T 2pmi_A 273 FLHGLLQLNPDMRLS 287 (317)
T ss_dssp HHHHHSCSSGGGSCC
T ss_pred HHHHHCCCCcccCCC
Confidence 455677777766544
No 42
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=23.40 E-value=14 Score=26.19 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=2.7
Q ss_pred hhhhhhcccccccc
Q 046709 62 AVYAISRDHHVHNH 75 (109)
Q Consensus 62 a~~a~~rdhh~h~h 75 (109)
+...+.-.||||+|
T Consensus 369 ~~~~l~~~~~~~~~ 382 (382)
T 2gha_A 369 IKAQIQGSHHHHHH 382 (382)
T ss_dssp HHHHHC--------
T ss_pred HHHHhcccccccCC
Confidence 33445557777765
No 43
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=23.39 E-value=17 Score=26.19 Aligned_cols=8 Identities=63% Similarity=1.136 Sum_probs=0.0
Q ss_pred cccccccc
Q 046709 69 DHHVHNHE 76 (109)
Q Consensus 69 dhh~h~h~ 76 (109)
.||||+||
T Consensus 4 ~~~~~~~~ 11 (420)
T 4hw8_A 4 SHHHHHHE 11 (420)
T ss_dssp --------
T ss_pred cccccccc
Confidence 46666666
No 44
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=22.58 E-value=18 Score=27.71 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=6.4
Q ss_pred cccccccc-ccccceeeeeccccCCcceeeeecCCCC
Q 046709 69 DHHVHNHE-MCKGGICWHGVAVRSPASQVRFRLPQQV 104 (109)
Q Consensus 69 dhh~h~h~-~CkGGICWHGVAvrSpASQvrfrLPq~~ 104 (109)
.||||+|| -||.|.. ....+|+-+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~--------~~~tL~v~~~~~~ 32 (486)
T 3rqt_A 4 SHHHHHHENLYFQGHS--------SGKDLNISLPLKT 32 (486)
T ss_dssp -------------------------CCEEEEEESSCC
T ss_pred ccccccccceeeecCC--------CCCEEEEEecCCC
Confidence 45555555 8988764 3345666655543
No 45
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=22.48 E-value=22 Score=22.43 Aligned_cols=16 Identities=50% Similarity=0.725 Sum_probs=7.7
Q ss_pred chhhhhhhcccccccc
Q 046709 60 QKAVYAISRDHHVHNH 75 (109)
Q Consensus 60 rka~~a~~rdhh~h~h 75 (109)
..|..++.|-||+|+|
T Consensus 115 ~~Al~~~~~~~~~~~~ 130 (130)
T 2kln_A 115 PTAVQAFRRRHHHHHH 130 (130)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHHHHhhccccCC
Confidence 5677788888887766
No 46
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=22.33 E-value=41 Score=24.23 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=13.7
Q ss_pred ceEEEEeehhHHHhhhhhhhceeccchhhhhhhcccccccc
Q 046709 35 SAIVLILSTTIVGVVLIGTLTWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 35 g~fVlivSt~~V~liLi~TLtWDvSrka~~a~~rdhh~h~h 75 (109)
++++++.----...--...--||+.+.. -.||+|+|
T Consensus 260 ~w~lvv~i~~~el~a~~~~~~~~l~~~~-----~~~~~~~~ 295 (295)
T 3lid_A 260 PLHLIIDLSNEQLSKRATRDINDLIQES-----LEHHHHHH 295 (295)
T ss_dssp EEEEEEEEEHHHHHHTTTCCHHHHSCC--------------
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHHHHH-----HhhhccCC
Confidence 4555555444444444444455555543 24666655
No 47
>1n1c_A TORA specific chaperone; TORD, 3D-domain swapping; 2.40A {Shewanella massilia} SCOP: a.184.1.1
Probab=22.24 E-value=24 Score=24.64 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=16.1
Q ss_pred hHHHhhhhhhhceeccch--hhhhhhcccccccc
Q 046709 44 TIVGVVLIGTLTWDVSQK--AVYAISRDHHVHNH 75 (109)
Q Consensus 44 ~~V~liLi~TLtWDvSrk--a~~a~~rdhh~h~h 75 (109)
..++.++-+++.+|-..- ..-.++-.||+|+|
T Consensus 184 ~~la~l~~~fl~~d~~~L~~~~~~~~~~~~~~~~ 217 (217)
T 1n1c_A 184 SAVATLTLAWVKQDIAQLEPAVAIISLEHHHHHH 217 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGC-------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchhhcccCC
Confidence 357778888888885433 23346667777765
No 48
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.99 E-value=19 Score=25.45 Aligned_cols=9 Identities=67% Similarity=1.132 Sum_probs=0.0
Q ss_pred hcccccccc
Q 046709 67 SRDHHVHNH 75 (109)
Q Consensus 67 ~rdhh~h~h 75 (109)
+|.||+|+|
T Consensus 245 ~~~~~~~~~ 253 (253)
T 2ze6_A 245 SRSHHHHHH 253 (253)
T ss_dssp ---------
T ss_pred cccccccCC
Confidence 345554443
No 49
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=21.71 E-value=19 Score=21.85 Aligned_cols=12 Identities=50% Similarity=0.711 Sum_probs=1.2
Q ss_pred hhhhcccccccc
Q 046709 64 YAISRDHHVHNH 75 (109)
Q Consensus 64 ~a~~rdhh~h~h 75 (109)
..-.|.||+|+|
T Consensus 128 ~~~~~~~~~~~~ 139 (139)
T 1pko_A 128 PGRSRSHHHHHH 139 (139)
T ss_dssp TTC---------
T ss_pred CcccccccccCC
Confidence 334567777665
No 50
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=21.51 E-value=20 Score=24.06 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhhhhhcccccccc
Q 046709 62 AVYAISRDHHVHNH 75 (109)
Q Consensus 62 a~~a~~rdhh~h~h 75 (109)
+.....+.||+|+|
T Consensus 184 ~~~~~~~~~~~~~~ 197 (197)
T 3d5n_A 184 LRDFHPLEHHHHHH 197 (197)
T ss_dssp --------------
T ss_pred HHHhhcccccccCC
Confidence 45556677777765
No 51
>2bt9_A Lectin; sugar recognition, beta-propeller; HET: MFU; 0.94A {Ralstonia solanacearum} PDB: 2bs5_A* 2bs6_A* 3zw0_A* 3zw1_B* 3zw2_A* 3zwe_A* 3zzv_A* 3zw0_B* 3zw1_A*
Probab=21.48 E-value=15 Score=24.80 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=27.8
Q ss_pred hhhhceeccchhhhhhhcccccccccccccceeeeeccccCCcce
Q 046709 51 IGTLTWDVSQKAVYAISRDHHVHNHEMCKGGICWHGVAVRSPASQ 95 (109)
Q Consensus 51 i~TLtWDvSrka~~a~~rdhh~h~h~~CkGGICWHGVAvrSpASQ 95 (109)
+|...||-+. -.+-.. +-..+.+|.|..|-=|+.-+.-.|.+|
T Consensus 5 lAAt~w~~~~-~IRVYy-~~~~~i~E~~~dg~~W~~g~~a~P~t~ 47 (90)
T 2bt9_A 5 TAATSWGTVP-SIRVYT-ANNGKITERCWDGKGWYTGAFNEPGDN 47 (90)
T ss_dssp EEEEEETTTT-EEEEEE-EETTEEEEEEESSSCEEEEEEEEECSE
T ss_pred EEEEecCCCC-eEEEEE-cCCCcEEEEEEcCCccccCcccCCCCc
Confidence 3556787663 334444 666788999998888987665444443
No 52
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=21.22 E-value=20 Score=27.95 Aligned_cols=25 Identities=36% Similarity=0.658 Sum_probs=0.0
Q ss_pred hhhhceeccchhhhhhhcccccccc
Q 046709 51 IGTLTWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 51 i~TLtWDvSrka~~a~~rdhh~h~h 75 (109)
+-.|..|-.+|.-||-.-.||+|+|
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (483)
T 3sv0_A 459 IEGLNFDGDERVQYAAALEHHHHHH 483 (483)
T ss_dssp -------------------------
T ss_pred hhhcccCCchHHHHHHHHhhhccCC
Confidence 3457788889999999999888876
No 53
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=21.03 E-value=20 Score=25.61 Aligned_cols=9 Identities=56% Similarity=1.043 Sum_probs=0.0
Q ss_pred ccccccccc
Q 046709 69 DHHVHNHEM 77 (109)
Q Consensus 69 dhh~h~h~~ 77 (109)
.||||+|.|
T Consensus 2 ~~~~~~~~~ 10 (412)
T 3okg_A 2 SHHHHHHSM 10 (412)
T ss_dssp ---------
T ss_pred Ccccccccc
Confidence 355555543
No 54
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=20.94 E-value=27 Score=24.31 Aligned_cols=14 Identities=43% Similarity=0.662 Sum_probs=10.5
Q ss_pred ccccccccccccce
Q 046709 69 DHHVHNHEMCKGGI 82 (109)
Q Consensus 69 dhh~h~h~~CkGGI 82 (109)
.||+|+|.|--||+
T Consensus 2 ~~~~~~~~~~~~~~ 15 (140)
T 2lkg_A 2 AHHHHHHAMVIDHI 15 (140)
T ss_dssp CCCSSCSSTTTTTH
T ss_pred CccccccceEeccE
Confidence 37788888877775
No 55
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=20.77 E-value=22 Score=24.85 Aligned_cols=13 Identities=54% Similarity=1.326 Sum_probs=9.0
Q ss_pred ccccceeeeeccccCCcce
Q 046709 77 MCKGGICWHGVAVRSPASQ 95 (109)
Q Consensus 77 ~CkGGICWHGVAvrSpASQ 95 (109)
.|.|-|| |||-.+
T Consensus 28 VCtgN~c------RSpmAE 40 (167)
T 2fek_A 28 VCVGNIC------RSPTAE 40 (167)
T ss_dssp EESSSSS------HHHHHH
T ss_pred EcCCcHH------HHHHHH
Confidence 6888888 666443
No 56
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=20.41 E-value=21 Score=22.49 Aligned_cols=7 Identities=71% Similarity=1.327 Sum_probs=0.0
Q ss_pred ccccccc
Q 046709 69 DHHVHNH 75 (109)
Q Consensus 69 dhh~h~h 75 (109)
|||+|+|
T Consensus 117 ~~~~~~~ 123 (123)
T 3t0v_A 117 DHHHHHH 123 (123)
T ss_dssp -------
T ss_pred cccccCC
Confidence 6776655
No 57
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=20.39 E-value=22 Score=25.63 Aligned_cols=14 Identities=50% Similarity=0.577 Sum_probs=3.8
Q ss_pred hhhhhhhccccccc
Q 046709 61 KAVYAISRDHHVHN 74 (109)
Q Consensus 61 ka~~a~~rdhh~h~ 74 (109)
+|+..+-..||+|+
T Consensus 417 raa~~i~~~~~~~~ 430 (431)
T 3k7m_X 417 CAVNAILHSHHHHH 430 (431)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHhhhcccC
Confidence 34444444444443
No 58
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=20.01 E-value=35 Score=24.31 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=7.7
Q ss_pred hhceeccchhhhhhhcccccccc
Q 046709 53 TLTWDVSQKAVYAISRDHHVHNH 75 (109)
Q Consensus 53 TLtWDvSrka~~a~~rdhh~h~h 75 (109)
...+|+++-...-|.-.||+|+|
T Consensus 375 ~~~~~~~~f~~~Rf~~~~~~~~~ 397 (397)
T 2oln_A 375 STAYDISRLAPQSALLEHHHHHH 397 (397)
T ss_dssp CCSSCCGGGSCCC----------
T ss_pred CCCCCccccccChhhhhhcccCC
Confidence 34566666555566667877766
Done!