Query 046709
Match_columns 109
No_of_seqs 8 out of 10
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 05:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0m_ f.23.19.1 (M:) Subunit 25.0 19 0.0014 19.5 1.8 25 1-27 1-25 (31)
2 d1iuea_ d.15.4.1 (A:) 2Fe-2S f 20.9 12 0.00085 22.5 0.4 16 68-83 29-44 (98)
3 d1frda_ d.15.4.1 (A:) 2Fe-2S f 17.9 15 0.0011 21.8 0.4 17 67-83 30-46 (98)
4 d1czpa_ d.15.4.1 (A:) 2Fe-2S f 15.1 20 0.0014 21.5 0.4 15 69-83 32-46 (98)
5 d1krha3 d.15.4.2 (A:2-105) Ben 14.8 20 0.0015 21.6 0.4 16 68-83 30-45 (104)
6 d1awda_ d.15.4.1 (A:) 2Fe-2S f 14.8 20 0.0014 21.3 0.4 15 69-83 28-42 (94)
7 d1qjka_ g.46.1.1 (A:) Metallot 14.7 20 0.0014 19.9 0.3 9 75-83 25-33 (36)
8 d1y6la_ d.20.1.1 (A:) Ubiquiti 13.8 67 0.0049 19.7 2.8 27 82-108 32-65 (148)
9 d1jq4a_ d.15.4.2 (A:) Methane 13.3 20 0.0015 21.1 0.1 15 69-83 33-47 (98)
10 d1wria_ d.15.4.1 (A:) 2Fe-2S f 13.1 21 0.0015 21.2 0.2 6 78-83 37-42 (93)
No 1
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=25.01 E-value=19 Score=19.48 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=11.9
Q ss_pred CchhhhhhhchhhHhHHHHHHhhhhhc
Q 046709 1 MALSDAVIGNLTTIYVAVIAGIKAYGL 27 (109)
Q Consensus 1 Ma~sDaV~~NlttIyvavia~ikAYg~ 27 (109)
|++||--+ +..+-+|++-+|-|+-+
T Consensus 1 m~lsdtqv--~valvial~pg~lafrl 25 (31)
T d1jb0m_ 1 MALTDTQV--YVALVIALLPAVLAFRL 25 (31)
T ss_dssp CCCCHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCchHHHH--HHHHHHHHHHHHHHHHH
Confidence 78888321 12222344445555544
No 2
>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=20.86 E-value=12 Score=22.53 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=12.1
Q ss_pred ccccccccccccccee
Q 046709 68 RDHHVHNHEMCKGGIC 83 (109)
Q Consensus 68 rdhh~h~h~~CkGGIC 83 (109)
.++..+....|++|+|
T Consensus 29 ~~~gi~i~~~C~~G~C 44 (98)
T d1iuea_ 29 ERQNVELPYSCRGGSC 44 (98)
T ss_dssp HHTTCCCCCSSCSSSS
T ss_pred HHcCCCeEEcCCceEc
Confidence 4555666779999998
No 3
>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}
Probab=17.88 E-value=15 Score=21.80 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=12.4
Q ss_pred hccccccccccccccee
Q 046709 67 SRDHHVHNHEMCKGGIC 83 (109)
Q Consensus 67 ~rdhh~h~h~~CkGGIC 83 (109)
.+++..+....|++|.|
T Consensus 30 a~~~Gi~i~~~C~~G~C 46 (98)
T d1frda_ 30 AEENGIELPFSCHSGSC 46 (98)
T ss_dssp HHHTTCCCCCSSSSSSS
T ss_pred HHHcCCCEEEecCCCee
Confidence 34555667779999987
No 4
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}
Probab=15.08 E-value=20 Score=21.52 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=10.7
Q ss_pred cccccccccccccee
Q 046709 69 DHHVHNHEMCKGGIC 83 (109)
Q Consensus 69 dhh~h~h~~CkGGIC 83 (109)
++....-..|++|+|
T Consensus 32 ~~Gi~ip~~C~~G~C 46 (98)
T d1czpa_ 32 EQGYDLPFSCRAGAC 46 (98)
T ss_dssp HTTCCCCCSSSSSSS
T ss_pred HcCCCeEEecCCccc
Confidence 344555668999998
No 5
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Probab=14.79 E-value=20 Score=21.61 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=11.5
Q ss_pred ccccccccccccccee
Q 046709 68 RDHHVHNHEMCKGGIC 83 (109)
Q Consensus 68 rdhh~h~h~~CkGGIC 83 (109)
.++..+.-..|++|+|
T Consensus 30 ~~~gi~i~~~C~~G~C 45 (104)
T d1krha3 30 YRQQINIPMDCREGEC 45 (104)
T ss_dssp HHTTCCCSCSCSSSSS
T ss_pred HHcCCCCccccCCccc
Confidence 3445566668999998
No 6
>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}
Probab=14.79 E-value=20 Score=21.27 Aligned_cols=15 Identities=20% Similarity=0.589 Sum_probs=11.1
Q ss_pred cccccccccccccee
Q 046709 69 DHHVHNHEMCKGGIC 83 (109)
Q Consensus 69 dhh~h~h~~CkGGIC 83 (109)
++.....-.|++|+|
T Consensus 28 ~~Gi~i~~~C~~G~C 42 (94)
T d1awda_ 28 EAGLDLPYSCRAGAC 42 (94)
T ss_dssp HTTCCCCCSSSSSSS
T ss_pred HcCCcEEEecCCCcc
Confidence 444556668999998
No 7
>d1qjka_ g.46.1.1 (A:) Metallothionein {Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]}
Probab=14.74 E-value=20 Score=19.93 Aligned_cols=9 Identities=56% Similarity=1.243 Sum_probs=7.1
Q ss_pred cccccccee
Q 046709 75 HEMCKGGIC 83 (109)
Q Consensus 75 h~~CkGGIC 83 (109)
-|-||.|||
T Consensus 25 g~cckdg~c 33 (36)
T d1qjka_ 25 GECCKDGTC 33 (36)
T ss_dssp CTTSSSSCS
T ss_pred cceeCCCcc
Confidence 457888988
No 8
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}
Probab=13.76 E-value=67 Score=19.70 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=18.8
Q ss_pred eeeeeccccCCcc-------eeeeecCCCCCCCC
Q 046709 82 ICWHGVAVRSPAS-------QVRFRLPQQVPYGA 108 (109)
Q Consensus 82 ICWHGVAvrSpAS-------QvrfrLPq~~P~~~ 108 (109)
--||++-.-.+-+ ++++.+|.+.|+.|
T Consensus 32 ~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~p 65 (148)
T d1y6la_ 32 YEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKP 65 (148)
T ss_dssp TEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSC
T ss_pred ceeceEEECCCCCCcCCCeEEEEEecCcccCCCC
Confidence 3488776543433 78889999988754
No 9
>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}
Probab=13.35 E-value=20 Score=21.08 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=10.6
Q ss_pred cccccccccccccee
Q 046709 69 DHHVHNHEMCKGGIC 83 (109)
Q Consensus 69 dhh~h~h~~CkGGIC 83 (109)
++..+....|++|+|
T Consensus 33 ~~Gi~i~~~C~~G~C 47 (98)
T d1jq4a_ 33 RQNIFLMSSCREGGC 47 (98)
T ss_dssp HHTCCCCCSCCSSCC
T ss_pred HcCCCeEEcCCCcee
Confidence 334555668999998
No 10
>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}
Probab=13.15 E-value=21 Score=21.16 Aligned_cols=6 Identities=50% Similarity=1.708 Sum_probs=0.0
Q ss_pred ccccee
Q 046709 78 CKGGIC 83 (109)
Q Consensus 78 CkGGIC 83 (109)
|++|+|
T Consensus 37 Cr~G~C 42 (93)
T d1wria_ 37 CQAGAC 42 (93)
T ss_dssp SSSSSS
T ss_pred eCCccc
Done!