BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046711
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 69 YVWKIDNFS----KLGAGYKESQAFGAGNHK--WKIELHPAGIDIGAADHLSMFLILENF 122
Y+W I+NFS ++G K S N K W + ++P G+D + D+LS++L+L
Sbjct: 14 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV-- 71
Query: 123 TVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELN 182
+ +V A+F I + G+ ++ + + F K WG +F+ L
Sbjct: 72 SCPKSEVRAKFKFSILNAKGEETK-------AMESQRAYRFVQGK-DWGFKKFIRRDFLL 123
Query: 183 DPETGFLVND-------VCVVEAEVTVLGISEP 208
D G L +D V VV+ V + G S P
Sbjct: 124 DEANGLLPDDKLTLFCEVSVVQDSVNISGQSGP 156
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 69 YVWKIDNFS----KLGAGYKESQAFGAGNHK--WKIELHPAGIDIGAADHLSMFLILENF 122
Y+W I+NFS ++G K S N K W + ++P G+D + D+LS++L+L
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV-- 70
Query: 123 TVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELN 182
+ +V A+F I + G+ ++ + + F K WG +F+ L
Sbjct: 71 SCPKSEVRAKFKFSILNAKGEETK-------AMESQRAYRFVQGK-DWGFKKFIRRDFLL 122
Query: 183 DPETGFLVNDVCVVEAEVTVL 203
D G L +D + EV+V+
Sbjct: 123 DEANGLLPDDKLTLFCEVSVV 143
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 69 YVWKIDNFS----KLGAGYKESQAFGAGNHK--WKIELHPAGIDIGAADHLSMFLILENF 122
Y+W I+NFS ++G K S N K W + ++P G+D + D+LS++L+L
Sbjct: 13 YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV-- 70
Query: 123 TVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELN 182
+ +V A+F I + G+ ++ + + F K WG +F+ L
Sbjct: 71 SCPKSEVRAKFKFSILNAKGEETK-------AMESQRAYRFVQGK-DWGFKKFIRRGFLL 122
Query: 183 DPETGFLVNDVCVVEAEVTVL 203
D G L +D + EV+V+
Sbjct: 123 DEANGLLPDDKLTLFCEVSVV 143
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 69 YVWKIDNFS----KLGAGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILEN 121
Y+W I+NFS ++G K S F +G + KW + ++P G+D + D+LS++L+L
Sbjct: 9 YMWTINNFSFCREEMGEVIK-SSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV- 66
Query: 122 FTVENVQVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSEL 181
+ +V A+F I + G+ ++ + + F K WG +F+ L
Sbjct: 67 -SCPKSEVRAKFKFSILNAKGEETK-------AMESQRAYRFVQGK-DWGFKKFIRRGFL 117
Query: 182 NDPETGFLVNDVCVVEAEVTVLGIS 206
D G L +D + EV+V+ S
Sbjct: 118 LDEANGLLPDDKLTLFCEVSVVQDS 142
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 19/164 (11%)
Query: 60 MEKYAYSSKYVWKIDNFSKLGAGYKE-------SQAFGAGNHKWKI--ELHPAGIDIGAA 110
+E YS K +WK+ ++ E SQ F +++ + G G
Sbjct: 17 LEGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKG 76
Query: 111 DHLSMFLILENFTVENV---QVYAEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTPK 167
HLS++ ++ +++ TL + DQ G+ ++ + N F P
Sbjct: 77 THLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKAD---PNSSSFKRPD 133
Query: 168 SSW----GCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISE 207
GCPRFVS S L + + ++ +D ++ V + + +
Sbjct: 134 GEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDLED 177
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 158 INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTV---LGISE 207
I+ +FH ++ WG F++ SE+ DPE GF+ +D E V G+SE
Sbjct: 106 ISHLFFHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADLDAGVSE 157
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 158 INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVE 197
I+ +FH ++ WG F++ SE+ DPE GF+ +D E
Sbjct: 116 ISHLFFHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFE 154
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 158 INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVE 197
I+ +FH ++ WG F++ SE+ DPE GF+ +D E
Sbjct: 106 ISHLFFHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFE 144
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 158 INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVE 197
I+ +FH ++ WG F++ SE+ DPE GF+ +D E
Sbjct: 106 ISHLFFHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFE 144
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 158 INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVE 197
I+ +FH ++ WG F++ SE+ DPE GF+ +D E
Sbjct: 104 ISHLFFHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFE 142
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 158 INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEV 200
I+ +FH ++ WG F++ SE+ DPE GF+ +D E V
Sbjct: 92 ISHLFFHK-ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFV 133
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 118 ILENFTVENVQVYAEFTLRIWDQLGQSMNLF-------KVKCV------SLHAINKFWFH 164
+++ FT NV++ E ++ L Q L ++K V L ++ K W H
Sbjct: 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309
Query: 165 TPKSSWGCPRFVSLSE 180
T CPR LS
Sbjct: 310 TNPWDCSCPRIDYLSR 325
>pdb|3ES5|A Chain A, Crystal Structure Of Partitivirus (Psv-F)
pdb|3ES5|B Chain B, Crystal Structure Of Partitivirus (Psv-F)
Length = 420
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 65 YSSKYVWKIDNFSKLGAGYKESQAFGA------GNH-KWKIELHPAGIDIG 108
Y++ + W++++ K+G + +GA GN +W+ L A I+IG
Sbjct: 329 YTTDFKWRVESIFKVGPPPAGTTGYGAQTVSSTGNTARWQFPLSDADINIG 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,568,001
Number of Sequences: 62578
Number of extensions: 266335
Number of successful extensions: 713
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 17
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)