Query 046711
Match_columns 209
No_of_seqs 179 out of 1176
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 100.0 2E-30 4.3E-35 195.9 17.2 130 66-204 2-134 (137)
2 cd03775 MATH_Ubp21p Ubiquitin- 100.0 4E-29 8.6E-34 188.2 14.8 123 68-201 2-134 (134)
3 cd03774 MATH_SPOP Speckle-type 100.0 3.2E-28 7E-33 184.2 14.1 130 65-204 3-138 (139)
4 cd03773 MATH_TRIM37 Tripartite 100.0 5.5E-28 1.2E-32 181.2 13.2 125 64-201 2-130 (132)
5 cd03780 MATH_TRAF5 Tumor Necro 99.9 4.4E-27 9.5E-32 179.4 13.3 131 67-200 1-147 (148)
6 cd00270 MATH_TRAF_C Tumor Necr 99.9 6.7E-27 1.5E-31 178.8 12.1 130 67-201 1-149 (149)
7 cd03776 MATH_TRAF6 Tumor Necro 99.9 7.2E-27 1.6E-31 178.5 11.3 130 67-201 1-147 (147)
8 cd03777 MATH_TRAF3 Tumor Necro 99.9 5.6E-26 1.2E-30 179.2 14.7 133 64-201 36-184 (186)
9 cd03779 MATH_TRAF1 Tumor Necro 99.9 8.7E-26 1.9E-30 171.7 13.5 130 67-200 1-146 (147)
10 cd03778 MATH_TRAF2 Tumor Necro 99.9 1.5E-25 3.2E-30 172.5 13.3 132 64-200 16-163 (164)
11 cd03781 MATH_TRAF4 Tumor Necro 99.9 1.8E-25 3.9E-30 172.1 12.9 130 67-201 1-154 (154)
12 cd03771 MATH_Meprin Meprin fam 99.9 1.8E-25 3.9E-30 173.1 12.2 131 66-201 1-167 (167)
13 cd00121 MATH MATH (meprin and 99.9 4.3E-24 9.3E-29 156.7 15.2 123 67-201 1-126 (126)
14 PF00917 MATH: MATH domain; I 99.9 9.4E-23 2E-27 149.1 9.4 113 73-202 1-119 (119)
15 cd03782 MATH_Meprin_Beta Mepri 99.8 1.7E-20 3.7E-25 143.4 10.8 131 66-201 1-167 (167)
16 cd03783 MATH_Meprin_Alpha Mepr 99.8 3.2E-20 7E-25 142.5 10.4 132 66-201 1-167 (167)
17 smart00061 MATH meprin and TRA 99.8 1.9E-18 4.1E-23 121.2 11.2 91 69-176 2-95 (95)
18 COG5077 Ubiquitin carboxyl-ter 99.6 5.7E-15 1.2E-19 133.7 7.0 131 63-205 35-173 (1089)
19 KOG1987 Speckle-type POZ prote 98.9 4.1E-08 8.8E-13 83.0 12.5 122 69-207 6-130 (297)
20 cd03772 MATH_HAUSP Herpesvirus 98.6 3.1E-08 6.8E-13 74.5 4.2 43 5-47 90-132 (137)
21 KOG1863 Ubiquitin carboxyl-ter 98.4 2E-07 4.3E-12 91.2 4.8 131 66-208 26-157 (1093)
22 cd03775 MATH_Ubp21p Ubiquitin- 98.4 2.3E-07 5E-12 69.5 3.6 42 4-45 88-133 (134)
23 cd03774 MATH_SPOP Speckle-type 98.1 1.2E-06 2.7E-11 65.9 2.6 43 4-47 94-136 (139)
24 PF00917 MATH: MATH domain; I 97.9 8.5E-06 1.9E-10 58.8 2.4 39 6-47 81-119 (119)
25 KOG1987 Speckle-type POZ prote 97.8 9.4E-07 2E-11 74.6 -4.3 189 6-204 84-295 (297)
26 KOG0297 TNF receptor-associate 97.5 9.5E-05 2.1E-09 65.1 3.4 78 63-140 276-365 (391)
27 cd03773 MATH_TRIM37 Tripartite 97.3 0.0001 2.2E-09 54.7 1.6 39 5-46 90-130 (132)
28 cd00121 MATH MATH (meprin and 96.9 0.00074 1.6E-08 48.5 3.0 35 10-46 92-126 (126)
29 COG5077 Ubiquitin carboxyl-ter 95.8 0.0057 1.2E-07 57.2 2.4 44 4-47 124-170 (1089)
30 KOG1863 Ubiquitin carboxyl-ter 94.6 0.02 4.3E-07 56.8 2.1 47 4-50 108-155 (1093)
31 PF06215 ISAV_HA: Infectious s 21.2 76 0.0016 26.9 2.2 30 71-103 197-226 (391)
32 PF08922 DUF1905: Domain of un 20.1 1.5E+02 0.0032 19.8 3.1 16 90-105 38-53 (80)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.97 E-value=2e-30 Score=195.92 Aligned_cols=130 Identities=22% Similarity=0.364 Sum_probs=111.9
Q ss_pred CCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcC--CCCCeEEEEEEEccCC-CCCceEEEEEEEEEEcCCC
Q 046711 66 SSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDI--GAADHLSMFLILENFT-VENVQVYAEFTLRIWDQLG 142 (209)
Q Consensus 66 ~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~--~~~~~lSlyL~l~~~~-~~~~~~~~~f~l~ilnq~~ 142 (209)
.++++|+|+|||.+ ++.+.|+.|.+||++|+|.+||+|... +..++||+||.|.+.. ...|++.|+|+|+|+||++
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~ 80 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKD 80 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCC
Confidence 47899999999998 678999999999999999999999654 2358999999998654 4589999999999999986
Q ss_pred CCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711 143 QSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG 204 (209)
Q Consensus 143 ~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~ 204 (209)
+..+..+. ..+.|.....+|||++||+|++|+++++|||+||+|+|||+|+|=.
T Consensus 81 ~~~~~~~~--------~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 81 DEPSFSRR--------ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CcccEEEe--------eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 44555444 5578876678999999999999987779999999999999998754
No 2
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.96 E-value=4e-29 Score=188.18 Aligned_cols=123 Identities=28% Similarity=0.483 Sum_probs=106.7
Q ss_pred EEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC------CCCceEEEEEEEEEEcCC
Q 046711 68 KYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT------VENVQVYAEFTLRIWDQL 141 (209)
Q Consensus 68 ~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~------~~~~~~~~~f~l~ilnq~ 141 (209)
+|+|+|+|||.+ ++.+.|++|.+|||+|+|.+||+|... .+|+||||.+.+.+ +.+|.+.|+|+|+|+||.
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 589999999996 578999999999999999999999865 78999999997643 257899999999999998
Q ss_pred CCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCC----CCCeeECCEEEEEEEEE
Q 046711 142 GQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDP----ETGFLVNDVCVVEAEVT 201 (209)
Q Consensus 142 ~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~----~~gyl~~D~l~i~~~v~ 201 (209)
++..+..+. ..++|+....+|||.+||++++|+++ ++|||+||+|+|+|.|.
T Consensus 79 ~~~~~~~~~--------~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNV--------AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEcc--------ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 755555544 67889877789999999999999954 57999999999999873
No 3
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.96 E-value=3.2e-28 Score=184.23 Aligned_cols=130 Identities=28% Similarity=0.518 Sum_probs=107.6
Q ss_pred CCCEEEEEEcCccccC---CCeeecccEEecCc---eEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEE
Q 046711 65 YSSKYVWKIDNFSKLG---AGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIW 138 (209)
Q Consensus 65 ~~~~~~w~I~nfS~l~---~~~~~S~~F~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~il 138 (209)
...+|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|...+..+|+||||++.+. ..+++.|+|+|+|+
T Consensus 3 ~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~--~~~~v~a~f~~~l~ 80 (139)
T cd03774 3 VKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSIL 80 (139)
T ss_pred eEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC--CCCcEEEEEEEEEE
Confidence 3568999999999874 67899999999985 9999999999875567899999999763 34679999999999
Q ss_pred cCCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711 139 DQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG 204 (209)
Q Consensus 139 nq~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~ 204 (209)
||+++....... ...+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 81 n~~~~~~~~~~~-------~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 81 NAKGEETKAMES-------QRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred ecCCCeeeeecc-------cCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999743221111 03466764 57999999999999987778999999999999999986
No 4
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.96 E-value=5.5e-28 Score=181.21 Aligned_cols=125 Identities=22% Similarity=0.323 Sum_probs=106.5
Q ss_pred CCCCEEEEEEcCccccC--CCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEEcCC
Q 046711 64 AYSSKYVWKIDNFSKLG--AGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQL 141 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~--~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~ilnq~ 141 (209)
++.++++|+|+|||.++ ++.+.|++|.+||++|+|.+||+|...+.++||||||++.++ ..+.+.++|+|+|+||.
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~--~~~~~~~~~~l~llnq~ 79 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG--LGEASKYEYRVEMVHQA 79 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC--CCCceeEEEEEEEEcCC
Confidence 35678999999999985 678999999999999999999999886667899999999864 34678999999999996
Q ss_pred CCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeEC--CEEEEEEEEE
Q 046711 142 GQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVN--DVCVVEAEVT 201 (209)
Q Consensus 142 ~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~--D~l~i~~~v~ 201 (209)
++..+..+. ..+.|.. ..+|||.+||++++|++ +|||+| |+|+|+|.|+
T Consensus 80 ~~~~~~~~~--------~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 80 NPTKNIKRE--------FASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCccceEEe--------ccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 545555444 5667864 57899999999999986 799999 9999999985
No 5
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.95 E-value=4.4e-27 Score=179.40 Aligned_cols=131 Identities=22% Similarity=0.360 Sum_probs=107.2
Q ss_pred CEEEEEEcCccccC-----CC--eeecccE--EecCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711 67 SKYVWKIDNFSKLG-----AG--YKESQAF--GAGNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT 134 (209)
Q Consensus 67 ~~~~w~I~nfS~l~-----~~--~~~S~~F--~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~ 134 (209)
+.+.|+|++||.++ ++ .+.|++| .++||+|+|++||+|.+.+.++|||+||+++.++ ...|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 57899999999985 44 7999999 8999999999999999987889999999999865 56899999999
Q ss_pred EEEEcCCCCCccEEEEeeeeccccceeEecCC----CCCCcccceeeccccCCCCCCeeECCEEEEEEEE
Q 046711 135 LRIWDQLGQSMNLFKVKCVSLHAINKFWFHTP----KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEV 200 (209)
Q Consensus 135 l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~~----~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v 200 (209)
|.|+||.+...++... . .+.+....|... +..||+++||++++|+..+.+||.||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~--~-~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMET--F-KADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCccee--e-ecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 9999998755543211 1 110123557644 5579999999999998644699999999999987
No 6
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.94 E-value=6.7e-27 Score=178.83 Aligned_cols=130 Identities=23% Similarity=0.349 Sum_probs=103.8
Q ss_pred CEEEEEEcCccccC-------CCeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711 67 SKYVWKIDNFSKLG-------AGYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT 134 (209)
Q Consensus 67 ~~~~w~I~nfS~l~-------~~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~ 134 (209)
++|+|+|++||.++ ++.+.|+.|.+| ||+|+|++||+|...+.++||||||++.+++ ...|++.++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 57999999999974 358999999999 9999999999998766678999999998764 46799999999
Q ss_pred EEEEcCCCC--CccEEEEeeeeccccceeEec-----CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711 135 LRIWDQLGQ--SMNLFKVKCVSLHAINKFWFH-----TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT 201 (209)
Q Consensus 135 l~ilnq~~~--~~~~~k~~~~~~~~~~~~~F~-----~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~ 201 (209)
|+|+||.++ ..+.... .. +....+.|. ....+|||.+||++++|++ .|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITET--FM-PDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEE--EE-cCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999873 3333221 00 000123453 1457899999999999986 5999999999999983
No 7
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.94 E-value=7.2e-27 Score=178.53 Aligned_cols=130 Identities=24% Similarity=0.334 Sum_probs=103.2
Q ss_pred CEEEEEEcCccccC-----CC--eeecccEEe--cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711 67 SKYVWKIDNFSKLG-----AG--YKESQAFGA--GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT 134 (209)
Q Consensus 67 ~~~~w~I~nfS~l~-----~~--~~~S~~F~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~ 134 (209)
+.|+|+|+|||.++ ++ .+.|++|.+ |||+|+|++||+|...+..+|||+||+|.+++ ...|++.++++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 57999999999764 34 488999985 79999999999999877789999999998754 45799999999
Q ss_pred EEEEcCCCCCccEEEEeeeeccccceeEecC-----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711 135 LRIWDQLGQSMNLFKVKCVSLHAINKFWFHT-----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT 201 (209)
Q Consensus 135 l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~-----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~ 201 (209)
|+|+||.++..++... .. +......|.. .+.+|||.+||++++|+. .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~--~~-~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHET--MM-SKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEE--EE-cCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 9999998754443221 00 0012345652 346899999999999986 6899999999999984
No 8
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.94 E-value=5.6e-26 Score=179.24 Aligned_cols=133 Identities=23% Similarity=0.332 Sum_probs=108.7
Q ss_pred CCCCEEEEEEcCccccC-----CC--eeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEE
Q 046711 64 AYSSKYVWKIDNFSKLG-----AG--YKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYA 131 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~ 131 (209)
..++.|.|+|+|||.++ ++ .+.|++|.+| ||+|+|++||+|.+.+.++|+|+||++.+++ ...|++.+
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~ 115 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 115 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeE
Confidence 45799999999999874 34 7999999999 9999999999999987889999999999865 45899999
Q ss_pred EEEEEEEcCCCCCccEEEEeeeeccccceeEecC-C---CCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711 132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHT-P---KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT 201 (209)
Q Consensus 132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~-~---~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~ 201 (209)
+++|.|+||.+...++... + .+.+....|.. . +.+||+++||++++|+. .+||+||+++|+|.|.
T Consensus 116 ~~tfsLlDQ~~~~~~~~~~--~-~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 116 KVTLMLMDQGSSRRHLGDA--F-KPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEcCCCccccccce--e-ccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEe
Confidence 9999999997644444222 1 11112345752 2 45799999999999986 7999999999999885
No 9
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.94 E-value=8.7e-26 Score=171.71 Aligned_cols=130 Identities=21% Similarity=0.333 Sum_probs=103.0
Q ss_pred CEEEEEEcCccccC-----C--CeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711 67 SKYVWKIDNFSKLG-----A--GYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT 134 (209)
Q Consensus 67 ~~~~w~I~nfS~l~-----~--~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~ 134 (209)
+.+.|+|+||+++. + ..++||.|..+ ||+|+|++||+|.+.+.++|+|+||++.+++ ...|++.++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 57899999999753 2 37999999865 9999999999999987789999999999864 45899999999
Q ss_pred EEEEcCCCCCccEEEEeeeeccccceeEec----CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEE
Q 046711 135 LRIWDQLGQSMNLFKVKCVSLHAINKFWFH----TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEV 200 (209)
Q Consensus 135 l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~----~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v 200 (209)
|+|+||.+. .+.... . .++...+.|. ..+..||+++||++++|+....+||+||+++|+|+|
T Consensus 81 fsLlDq~~~-~~~~~~--~-~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 81 FMLLDQNNR-EHVIDA--F-RPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEECCCCC-CCCcEe--e-cCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 999999863 332211 1 1111135686 345679999999999998632499999999999998
No 10
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.93 E-value=1.5e-25 Score=172.47 Aligned_cols=132 Identities=21% Similarity=0.330 Sum_probs=108.8
Q ss_pred CCCCEEEEEEcCccccC-------CCeeecccEEe--cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEE
Q 046711 64 AYSSKYVWKIDNFSKLG-------AGYKESQAFGA--GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYA 131 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~-------~~~~~S~~F~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~ 131 (209)
...+.|+|+|+|||++. ...++||.|.. +||+|+|++||+|++.+++.|||||+++++++ ...|++..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 45799999999999975 23789999975 59999999999999988899999999999988 58999999
Q ss_pred EEEEEEEcCCCCCccEEEEeeeeccccceeEec----CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEE
Q 046711 132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFH----TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEV 200 (209)
Q Consensus 132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~----~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v 200 (209)
+++|+|+||++ +.|+... ..+++....|. ..+.+|||++|+++++|..+ .+||+||+|.|+|.|
T Consensus 96 ~itl~llDQ~~-r~hi~~~---~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 96 KVTLMLLDQNN-REHVIDA---FRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred EEEEEEECCCC-CCcceeE---EEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 99999999986 6777644 11111222352 23567999999999999864 599999999999987
No 11
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.93 E-value=1.8e-25 Score=172.06 Aligned_cols=130 Identities=19% Similarity=0.279 Sum_probs=103.5
Q ss_pred CEEEEEEcCccccC-------CCeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEEEE
Q 046711 67 SKYVWKIDNFSKLG-------AGYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAEFT 134 (209)
Q Consensus 67 ~~~~w~I~nfS~l~-------~~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~f~ 134 (209)
+.|.|+|++||.++ +..+.|+.|.+| ||+|+|++||+|...+..+|||+||+|.+++ ...|++.++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 57999999999875 358999999999 9999999999999877789999999999865 25899999999
Q ss_pred EEEEcCCCC--C--ccEEEEeeeeccccceeEecC--------CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711 135 LRIWDQLGQ--S--MNLFKVKCVSLHAINKFWFHT--------PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT 201 (209)
Q Consensus 135 l~ilnq~~~--~--~~~~k~~~~~~~~~~~~~F~~--------~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~ 201 (209)
|+|+||.+. . .++... ++. ......|.. .+.+||+.+||++++|+. .+||+||+|+|+|+|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~--~~~-~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITET--FTP-DPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEE--EEc-CCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence 999999863 1 122111 110 012334542 346799999999999986 7899999999999973
No 12
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.93 E-value=1.8e-25 Score=173.05 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=101.6
Q ss_pred CCEEEEEEcCccccC-----CCeeecccE-EecCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCce-EEEEEEE
Q 046711 66 SSKYVWKIDNFSKLG-----AGYKESQAF-GAGNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQ-VYAEFTL 135 (209)
Q Consensus 66 ~~~~~w~I~nfS~l~-----~~~~~S~~F-~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~-~~~~f~l 135 (209)
+++|+|+|+|||.++ +..+.|++| .+|||+|+|++||+|... .++||||||++.+++ ...|+ +.++++|
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~ 79 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM 79 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence 468999999999985 458999998 899999999999999987 789999999998765 56899 5899999
Q ss_pred EEEcCCC---CCccEEEEeeeecccc----------------ceeEecC-------CCCCCcccceeeccccCCCCCCee
Q 046711 136 RIWDQLG---QSMNLFKVKCVSLHAI----------------NKFWFHT-------PKSSWGCPRFVSLSELNDPETGFL 189 (209)
Q Consensus 136 ~ilnq~~---~~~~~~k~~~~~~~~~----------------~~~~F~~-------~~~~wG~~~Fi~~~~L~~~~~gyl 189 (209)
+|+||.. ++.|... +++..+. ...+... .+.+|||++||++++|+. .+||
T Consensus 80 ~LlDQ~~~~~~r~~~~~--~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~yl 155 (167)
T cd03771 80 TLLDQDPDIQQRMSNQR--SFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFL 155 (167)
T ss_pred EEECCCCcccccCcceE--EEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCC
Confidence 9999974 1223322 1111110 0011221 345899999999999997 6799
Q ss_pred ECCEEEEEEEEE
Q 046711 190 VNDVCVVEAEVT 201 (209)
Q Consensus 190 ~~D~l~i~~~v~ 201 (209)
+||+|.|+++++
T Consensus 156 k~dtl~i~~~~~ 167 (167)
T cd03771 156 KGDDLIILLDFE 167 (167)
T ss_pred cCCEEEEEEEeC
Confidence 999999999873
No 13
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.92 E-value=4.3e-24 Score=156.67 Aligned_cols=123 Identities=38% Similarity=0.604 Sum_probs=103.4
Q ss_pred CEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC--CCCceEEEEEEEEEEcCCCCC
Q 046711 67 SKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT--VENVQVYAEFTLRIWDQLGQS 144 (209)
Q Consensus 67 ~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~~~~~~~~~f~l~ilnq~~~~ 144 (209)
++|+|+|.+|+...++.++|+.|.++|++|+|.+||+|... ..++||+||+|.+.. ...|++.++++|+|+||++ .
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 78 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNG-G 78 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCC-C
Confidence 36899999999966889999999999999999999999765 568999999998764 3579999999999999984 4
Q ss_pred ccEEEEeeeeccccceeEec-CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEE
Q 046711 145 MNLFKVKCVSLHAINKFWFH-TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVT 201 (209)
Q Consensus 145 ~~~~k~~~~~~~~~~~~~F~-~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~ 201 (209)
++..+. ....|. ....+|||.+||++++|++ ..+++||+|+|+|+|.
T Consensus 79 ~~~~~~--------~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 79 KSLSKS--------FTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred ccceEe--------ccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 455454 444553 4578999999999999997 3449999999999984
No 14
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.88 E-value=9.4e-23 Score=149.09 Aligned_cols=113 Identities=35% Similarity=0.590 Sum_probs=93.9
Q ss_pred EcCccccC-C-CeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC--C-CCceEEEEEEEEEEcCCCCCccE
Q 046711 73 IDNFSKLG-A-GYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT--V-ENVQVYAEFTLRIWDQLGQSMNL 147 (209)
Q Consensus 73 I~nfS~l~-~-~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~-~~~~~~~~f~l~ilnq~~~~~~~ 147 (209)
|+|||+++ + ..+.|+.|.++|++|+|.+||+|+ +++|++||+|..++ . ..|++.++++++|+++.++ . .
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~ 74 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGK-S-I 74 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSC-E-E
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCC-c-c
Confidence 78999997 3 344558888999999999999986 58999999999876 2 5899999999999999984 3 2
Q ss_pred EEEeeeeccccc-eeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEE
Q 046711 148 FKVKCVSLHAIN-KFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTV 202 (209)
Q Consensus 148 ~k~~~~~~~~~~-~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v 202 (209)
.+. . .+.|.. ..+|||.+||++++|.++ .|++||+|+|+|+|+|
T Consensus 75 ~~~--------~~~~~F~~-~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 75 SKR--------IKSHSFNN-PSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEE--------EECEEECT-TSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred eee--------eeeeEEee-ecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 233 2 377874 589999999999999974 3899999999999987
No 15
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.84 E-value=1.7e-20 Score=143.42 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=103.2
Q ss_pred CCEEEEEEcCccccC-----CCeeecccEEe-cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEE-EEEEE
Q 046711 66 SSKYVWKIDNFSKLG-----AGYKESQAFGA-GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVY-AEFTL 135 (209)
Q Consensus 66 ~~~~~w~I~nfS~l~-----~~~~~S~~F~~-gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~-~~f~l 135 (209)
++.+.|+|+||+++. +..++||+|.. .||+.+|++||+|.+.+ +.|||||+++..++ ...|++. .+++|
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 357899999999974 46799999964 69999999999999875 68999999999988 7799999 89999
Q ss_pred EEEcCCC---CCccEEEEeee-eccccce---eEe--cC-----------------CCCCCcccceeeccccCCCCCCee
Q 046711 136 RIWDQLG---QSMNLFKVKCV-SLHAINK---FWF--HT-----------------PKSSWGCPRFVSLSELNDPETGFL 189 (209)
Q Consensus 136 ~ilnq~~---~~~~~~k~~~~-~~~~~~~---~~F--~~-----------------~~~~wG~~~Fi~~~~L~~~~~gyl 189 (209)
.|+||+. .+.|+... + +.|.... ..| .. ++.++||+.||++++|+. ..||
T Consensus 80 ~LlDQ~~d~~~r~~~~~~--~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yi 155 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRS--VTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFI 155 (167)
T ss_pred EEEcCCCchhhccceeee--EEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcc
Confidence 9999974 34454331 1 2221111 134 21 168899999999999997 8999
Q ss_pred ECCEEEEEEEEE
Q 046711 190 VNDVCVVEAEVT 201 (209)
Q Consensus 190 ~~D~l~i~~~v~ 201 (209)
+||++.|-++++
T Consensus 156 kdD~ifi~~~~e 167 (167)
T cd03782 156 KGDDVIFLLTME 167 (167)
T ss_pred cCCeEEEEEecC
Confidence 999999988763
No 16
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.83 E-value=3.2e-20 Score=142.53 Aligned_cols=132 Identities=17% Similarity=0.252 Sum_probs=101.2
Q ss_pred CCEEEEEEcCccccC-----CCeeecccEEe-cCceEEEEEecCCCcC-CCCCeEEEEEEEccCC---CCCceE-EEEEE
Q 046711 66 SSKYVWKIDNFSKLG-----AGYKESQAFGA-GNHKWKIELHPAGIDI-GAADHLSMFLILENFT---VENVQV-YAEFT 134 (209)
Q Consensus 66 ~~~~~w~I~nfS~l~-----~~~~~S~~F~~-gg~~W~l~vyP~G~~~-~~~~~lSlyL~l~~~~---~~~~~~-~~~f~ 134 (209)
++.+.|+|+||+++. +..++||.|.. .||+.+|++||+|.+. +.+.|||||++++.++ ...|++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 356899999999864 46799999987 4999999999999874 5688999999999987 779995 57999
Q ss_pred EEEEcCCC---CCccEEEEeeeecccc-ce------eEecC--------------CCCCCcccceeeccccCCCCCCeeE
Q 046711 135 LRIWDQLG---QSMNLFKVKCVSLHAI-NK------FWFHT--------------PKSSWGCPRFVSLSELNDPETGFLV 190 (209)
Q Consensus 135 l~ilnq~~---~~~~~~k~~~~~~~~~-~~------~~F~~--------------~~~~wG~~~Fi~~~~L~~~~~gyl~ 190 (209)
|.|+||+. ++.|+... ++.... .. ..|.. .+.++||++||++++|+. .+||+
T Consensus 81 l~llDQ~~~~~~r~~~~~s--f~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yik 156 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRS--FTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLK 156 (167)
T ss_pred EEEEcCCcchhhcccccee--eecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCccc
Confidence 99999974 23333211 111100 00 01322 356899999999999997 89999
Q ss_pred CCEEEEEEEEE
Q 046711 191 NDVCVVEAEVT 201 (209)
Q Consensus 191 ~D~l~i~~~v~ 201 (209)
||+|.|.++++
T Consensus 157 dDtlfI~~~~~ 167 (167)
T cd03783 157 NDDLIIFVDFE 167 (167)
T ss_pred CCeEEEEEecC
Confidence 99999999863
No 17
>smart00061 MATH meprin and TRAF homology.
Probab=99.79 E-value=1.9e-18 Score=121.18 Aligned_cols=91 Identities=26% Similarity=0.369 Sum_probs=77.7
Q ss_pred EEEEEcCccccC-CCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC--CCCceEEEEEEEEEEcCCCCCc
Q 046711 69 YVWKIDNFSKLG-AGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT--VENVQVYAEFTLRIWDQLGQSM 145 (209)
Q Consensus 69 ~~w~I~nfS~l~-~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~~~~~~~~~f~l~ilnq~~~~~ 145 (209)
++|+|+||+.+. ++.+.|++|.++|++|+|.+||+ .+|||+||.|.+.+ +.+|++.|+++|+|+||+++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~-~ 74 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGK-S 74 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCC-E
Confidence 579999999985 78899999999999999999998 58999999998765 34799999999999999974 3
Q ss_pred cEEEEeeeeccccceeEecCCCCCCccccee
Q 046711 146 NLFKVKCVSLHAINKFWFHTPKSSWGCPRFV 176 (209)
Q Consensus 146 ~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi 176 (209)
+ .+. ..+.|.. ..+|||.+||
T Consensus 75 ~-~~~--------~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 75 L-SKK--------DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred E-eee--------eeEEEcC-CCccceeeEC
Confidence 3 333 5677875 7889999886
No 18
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.7e-15 Score=133.74 Aligned_cols=131 Identities=27% Similarity=0.487 Sum_probs=111.1
Q ss_pred eCCCCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC----C-CCceEEEEEEEEE
Q 046711 63 YAYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT----V-ENVQVYAEFTLRI 137 (209)
Q Consensus 63 ~~~~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~----~-~~~~~~~~f~l~i 137 (209)
......++|+|++||++.. .+.||.|.+||+.|+|.++|+|+.. ...|+||.....+ . ..|.+.|+|.|.|
T Consensus 35 e~~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq---~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~I 110 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQ---CNVSVYLEYEPQELEETGGKYYDCCAQFAFDI 110 (1089)
T ss_pred HHhhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCc---cccEEEEEeccchhhhhcCcchhhhhheeeec
Confidence 4456789999999999975 6889999999999999999999863 3399999998654 2 3499999999999
Q ss_pred EcCCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCC---eeECCEEEEEEEEEEEee
Q 046711 138 WDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETG---FLVNDVCVVEAEVTVLGI 205 (209)
Q Consensus 138 lnq~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g---yl~~D~l~i~~~v~v~~~ 205 (209)
-|+..+......+ +.|+|+....+|||.+|+.+..|..|+.| |+.+|++.|.|.|.|++.
T Consensus 111 s~p~~pti~~iN~--------sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 111 SNPKYPTIEYINK--------SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred CCCCCCchhhhhc--------ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 9988765544444 77899988999999999999999887654 678999999999999976
No 19
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.87 E-value=4.1e-08 Score=82.95 Aligned_cols=122 Identities=28% Similarity=0.465 Sum_probs=97.5
Q ss_pred EEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEEcCCCCCc-cE
Q 046711 69 YVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIWDQLGQSM-NL 147 (209)
Q Consensus 69 ~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~ilnq~~~~~-~~ 147 (209)
+.|.+.+|+... ..++|..|..+|..|++.+||.|+ ++++|+.+... ++|.+++++.|.+.||..... ..
T Consensus 6 ~~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~l~v~n~~~~~~~~~ 76 (297)
T KOG1987|consen 6 FTWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDS--PGWERYAKLRLTVVNQKSEKYLST 76 (297)
T ss_pred cceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccC--CCcceeEEEEEEEccCCCcceeee
Confidence 348899998876 678899999999999999999863 79999998874 279999999999999988422 22
Q ss_pred EEEeeeeccccceeEecCC--CCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeec
Q 046711 148 FKVKCVSLHAINKFWFHTP--KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISE 207 (209)
Q Consensus 148 ~k~~~~~~~~~~~~~F~~~--~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~ 207 (209)
..+ ...+|... ...||+...++...+.+.+.||++++.+++-+++.|++..+
T Consensus 77 ~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~ 130 (297)
T KOG1987|consen 77 VEE--------GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMG 130 (297)
T ss_pred eee--------eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeec
Confidence 112 33444433 68999999999999999889999998888888877776543
No 20
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=98.64 E-value=3.1e-08 Score=74.48 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=40.3
Q ss_pred ceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711 5 ERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV 47 (209)
Q Consensus 5 ~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~ 47 (209)
.|+|+.....|||.+||+|++|.++++|||+||+++|+++|.|
T Consensus 90 ~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~ 132 (137)
T cd03772 90 SHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQA 132 (137)
T ss_pred eeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEe
Confidence 4689888889999999999999999999999999999999998
No 21
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2e-07 Score=91.24 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=107.0
Q ss_pred CCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC-CCCceEEEEEEEEEEcCCCCC
Q 046711 66 SSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT-VENVQVYAEFTLRIWDQLGQS 144 (209)
Q Consensus 66 ~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~-~~~~~~~~~f~l~ilnq~~~~ 144 (209)
....+|...+...+.. ...|+.|..|+.+|++.+.|+++. ...++.|+.+.... ...|.+.+++.+.+.|..++.
T Consensus 26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~ 101 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNL 101 (1093)
T ss_pred cccccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCCcceEecchhhhccccCCCCc
Confidence 3445566666555555 678999999999999999999983 67899999999764 334999999999999944433
Q ss_pred ccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeecC
Q 046711 145 MNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEP 208 (209)
Q Consensus 145 ~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~~ 208 (209)
.+..+. ..|.|.....+||+.+|+.++++.++..||+.+|++.++++|.+...++.
T Consensus 102 ~~~~~~--------~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 102 PDPEKA--------IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred hhhhhh--------hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 444444 77889888899999999999999999999999999999999999876653
No 22
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=98.41 E-value=2.3e-07 Score=69.52 Aligned_cols=42 Identities=24% Similarity=0.463 Sum_probs=38.1
Q ss_pred cceeecCCCcccccccceecccccCC----CCCEEEcCeEEEeEEE
Q 046711 4 KERRFNGLKLQWGLDQFIPLEAFNDS----TNGYLVKDTCVFGAEV 45 (209)
Q Consensus 4 ~~~~f~~~~~~~G~~~fi~~~~l~~~----~~gyl~~d~~~~~~~v 45 (209)
..|+|+....+|||.+||++++|++| .+|||+||+++|.|+|
T Consensus 88 ~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 88 AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 46899988899999999999999966 6899999999999887
No 23
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=98.15 E-value=1.2e-06 Score=65.86 Aligned_cols=43 Identities=33% Similarity=0.512 Sum_probs=38.5
Q ss_pred cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711 4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV 47 (209)
Q Consensus 4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~ 47 (209)
..++|+. ..+|||.+||++++|.++.+|||.||+++|+++|.|
T Consensus 94 ~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V 136 (139)
T cd03774 94 RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 136 (139)
T ss_pred CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEE
Confidence 3577875 579999999999999998999999999999999987
No 24
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=97.86 E-value=8.5e-06 Score=58.83 Aligned_cols=39 Identities=33% Similarity=0.625 Sum_probs=34.7
Q ss_pred eeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711 6 RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV 47 (209)
Q Consensus 6 ~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~ 47 (209)
|+|+.. ..|||.+||+|++|.+|. |+.||+++|+|+|.|
T Consensus 81 ~~F~~~-~~~g~~~fi~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 81 HSFNNP-SSWGWSSFISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEECTT-SEEEEEEEEEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred eEEeee-cccchhheeEHHHhCccC--CeECCEEEEEEEEEC
Confidence 677665 789999999999999766 999999999999976
No 25
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.79 E-value=9.4e-07 Score=74.63 Aligned_cols=189 Identities=22% Similarity=0.244 Sum_probs=121.4
Q ss_pred eeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-eceeCCccceEEe--------eEeCCC----CEEEEE
Q 046711 6 RRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KERSRVKGECLSM--------EKYAYS----SKYVWK 72 (209)
Q Consensus 6 ~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~~~~~~e~~~~--------~~~~~~----~~~~w~ 72 (209)
.+|+.....||+.+++|+..+.++..||+++..+++-++..| ++. .+.+.... ..++.. ..|+|.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~--~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~ 161 (297)
T KOG1987|consen 84 FRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAM--GKSDVFKESSKLITLLEEKPEVLEALNGFQVL 161 (297)
T ss_pred ccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeee--cccccchhccccccccccchhhHhhhceEEEe
Confidence 345566899999999999999999999999944444444335 333 33333221 233445 899999
Q ss_pred EcCccccCC----CeeecccEEecCceEEEEEecCCCcCCCCCeEEEEEEEccCC----CCCceEEEEEEEEEEcCCCC-
Q 046711 73 IDNFSKLGA----GYKESQAFGAGNHKWKIELHPAGIDIGAADHLSMFLILENFT----VENVQVYAEFTLRIWDQLGQ- 143 (209)
Q Consensus 73 I~nfS~l~~----~~~~S~~F~~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~----~~~~~~~~~f~l~ilnq~~~- 143 (209)
+.+++..+. ..+.+..|..++..|++.++|.+.+.....+++.||+..+.. .....+++....+.+|+...
T Consensus 162 ~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~ 241 (297)
T KOG1987|consen 162 PSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKK 241 (297)
T ss_pred ccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHH
Confidence 999998872 266778999999999999999998765566788888876532 22233444555556676552
Q ss_pred CccE-EEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711 144 SMNL-FKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG 204 (209)
Q Consensus 144 ~~~~-~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~ 204 (209)
.++. .+.+ ...+.......+ ..++.++.++.....+++++|++.++++...+.
T Consensus 242 ~~~~~~k~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 295 (297)
T KOG1987|consen 242 LNEVKEKKK-------KDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPLS 295 (297)
T ss_pred HHHHHHhhh-------HHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCcC
Confidence 1221 1110 011111111222 456777776666566788888888887766553
No 26
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.46 E-value=9.5e-05 Score=65.07 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=68.9
Q ss_pred eCCCCEEEEEEcCccccC-------CCeeecccEEe--cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEE
Q 046711 63 YAYSSKYVWKIDNFSKLG-------AGYKESQAFGA--GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVY 130 (209)
Q Consensus 63 ~~~~~~~~w~I~nfS~l~-------~~~~~S~~F~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~ 130 (209)
....+.+.|+|.+++..+ ...+.|+.|.. .||+.+..+|-+|++.+.+.++|+|+.+..++ ...|+++
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCC
Confidence 346899999999996654 45788998874 69999999999999998899999999999987 6789999
Q ss_pred EEEEEEEEcC
Q 046711 131 AEFTLRIWDQ 140 (209)
Q Consensus 131 ~~f~l~ilnq 140 (209)
-++++.+++|
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 27
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=97.31 E-value=0.0001 Score=54.73 Aligned_cols=39 Identities=28% Similarity=0.554 Sum_probs=32.5
Q ss_pred ceeecCCCcccccccceecccccCCCCCEEEc--CeEEEeEEEE
Q 046711 5 ERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVK--DTCVFGAEVF 46 (209)
Q Consensus 5 ~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~--d~~~~~~~v~ 46 (209)
.|+|.. ..+|||.+||++++|.+ +|||.| |+++|+++|.
T Consensus 90 ~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 90 ASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred cccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 466765 46799999999999974 799999 9999888774
No 28
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=96.94 E-value=0.00074 Score=48.54 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=30.3
Q ss_pred CCCcccccccceecccccCCCCCEEEcCeEEEeEEEE
Q 046711 10 GLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVF 46 (209)
Q Consensus 10 ~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~ 46 (209)
....+|||.+||++++|.++. ++.||++.|+++|.
T Consensus 92 ~~~~~~G~~~fi~~~~l~~~~--~~~~d~l~i~~~v~ 126 (126)
T cd00121 92 EKGSGWGFPKFISWDDLEDSY--YLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCCCChHHeeEHHHhccCC--cEECCEEEEEEEEC
Confidence 667899999999999999643 39999999999873
No 29
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0057 Score=57.17 Aligned_cols=44 Identities=30% Similarity=0.521 Sum_probs=40.1
Q ss_pred cceeecCCCcccccccceecccccCCCCC---EEEcCeEEEeEEEEE
Q 046711 4 KERRFNGLKLQWGLDQFIPLEAFNDSTNG---YLVKDTCVFGAEVFV 47 (209)
Q Consensus 4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~g---yl~~d~~~~~~~v~~ 47 (209)
..|||+...++|||++|+.|..+..|+.| |+.+++++|.|.|.|
T Consensus 124 sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRv 170 (1089)
T COG5077 124 SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRV 170 (1089)
T ss_pred ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEE
Confidence 46999999999999999999999987666 588899999999999
No 30
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.02 Score=56.78 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=44.3
Q ss_pred cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-ece
Q 046711 4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KER 50 (209)
Q Consensus 4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~ 50 (209)
..|+|.....+||+.+|+.++++.+|..||+.+|++.+.++|.+ .++
T Consensus 108 ~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~ 155 (1093)
T KOG1863|consen 108 IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPT 155 (1093)
T ss_pred hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCC
Confidence 57999999999999999999999999999999999999999999 554
No 31
>PF06215 ISAV_HA: Infectious salmon anaemia virus haemagglutinin; InterPro: IPR010408 This entry represents the haemagglutinin-esterase fusion glycoprotein (HEF) found specifically in infectious anaemia virus (ISAV), an orthomyxovirus-type virus that is an important fish pathogen in marine aquaculture [, ]. Other viruses, such as influenza C virus, coronaviruses and toroviruses, also contain surface HEF proteins, but whereas they usually bind 9-O-acetylsialic acid receptors, ISAV HEF appears to bind 4-O- acetylsialic acid receptors []. Haemagglutinin-esterase fusion glycoprotein is a multi-functional protein embedded in the viral envelope of ISAV. HEF is required for infectivity, and functions to recognise the host cell surface receptor, to fuse the viral and host cell membranes, and to destroy the receptor upon host cell infection. The haemagglutinin region of HEF is responsible for receptor recognition and membrane fusion. The serine esterase region of HEF is responsible for the destruction of the receptor, though it appears to be distinct from the esterase domain found in influenza C virus. Haemagglutinin-esterase glycoproteins must usually be cleaved by the host's trypsin-like proteases to produce two peptides (HEF1 and HEF2) necessary for the virus to be infectious. The cleaved HEF protein can then fuse the viral envelope to the cellular membrane of the host cell, which allows the virus to infect the host cell. More information about haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].
Probab=21.18 E-value=76 Score=26.95 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=23.2
Q ss_pred EEEcCccccCCCeeecccEEecCceEEEEEecC
Q 046711 71 WKIDNFSKLGAGYKESQAFGAGNHKWKIELHPA 103 (209)
Q Consensus 71 w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~ 103 (209)
.+++||+ +..+.|++|+++|.+|.-..-..
T Consensus 197 l~~dNF~---G~i~VSD~~~~~~~~~~CV~L~~ 226 (391)
T PF06215_consen 197 LRFDNFS---GQIYVSDTFEVRGTKNKCVWLRS 226 (391)
T ss_pred eeeeccc---ccEEEeeeEEEcCCcCceEEEEc
Confidence 3566776 77899999999999996655544
No 32
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=20.07 E-value=1.5e+02 Score=19.78 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=13.8
Q ss_pred EecCceEEEEEecCCC
Q 046711 90 GAGNHKWKIELHPAGI 105 (209)
Q Consensus 90 ~~gg~~W~l~vyP~G~ 105 (209)
+++|+.|+-.+.|+|.
T Consensus 38 tI~g~~~~~sl~p~g~ 53 (80)
T PF08922_consen 38 TIDGHPWRTSLFPMGN 53 (80)
T ss_dssp EETTEEEEEEEEESST
T ss_pred EECCEEEEEEEEECCC
Confidence 5689999999999774
Done!