Query 046711
Match_columns 209
No_of_seqs 179 out of 1176
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 100.0 1.7E-33 5.7E-38 215.6 14.3 136 65-209 17-154 (155)
2 3ivv_A Speckle-type POZ protei 100.0 5E-32 1.7E-36 205.3 10.4 133 63-205 7-145 (145)
3 4gjh_A TNF receptor-associated 100.0 1.8E-31 6.2E-36 209.0 7.6 139 63-204 20-174 (178)
4 4ghu_A TNF receptor-associated 100.0 3.6E-30 1.2E-34 204.7 6.7 140 64-207 37-191 (198)
5 2gkw_A TNF receptor-associated 100.0 1.5E-29 5.2E-34 200.3 8.1 135 65-204 38-188 (192)
6 1ca9_A TRAF2, protein (TNF rec 100.0 1.2E-29 4E-34 200.9 6.7 136 64-204 40-191 (192)
7 1lb6_A TNF receptor-associated 100.0 5.8E-29 2E-33 191.4 9.6 136 65-205 3-158 (160)
8 1d00_A Tumor necrosis factor r 100.0 2.5E-29 8.7E-34 194.7 7.2 136 64-204 16-167 (168)
9 1flk_A TNF receptor associated 100.0 5.1E-29 1.7E-33 202.2 5.9 137 64-205 73-225 (228)
10 3hqi_A Speckle-type POZ protei 99.9 3.6E-27 1.2E-31 199.0 12.0 131 65-205 5-141 (312)
11 2f1z_A Ubiquitin carboxyl-term 99.9 4.9E-27 1.7E-31 211.1 11.4 135 64-207 28-164 (522)
12 4gwm_A Meprin A subunit beta; 99.5 2.3E-14 7.9E-19 129.6 9.5 135 63-204 402-567 (592)
13 2foj_A Ubiquitin carboxyl-term 98.7 3.3E-09 1.1E-13 80.1 2.9 46 5-50 105-151 (155)
14 3ivv_A Speckle-type POZ protei 98.5 1.3E-08 4.5E-13 76.0 0.9 43 4-47 100-142 (145)
15 2f1z_A Ubiquitin carboxyl-term 98.0 1.9E-06 6.3E-11 77.1 1.8 47 4-50 116-163 (522)
16 3hqi_A Speckle-type POZ protei 97.9 2.3E-06 7.9E-11 71.4 1.6 43 4-47 96-138 (312)
17 4gwm_A Meprin A subunit beta; 84.2 0.29 1E-05 44.2 1.1 34 12-47 532-565 (592)
18 3v0r_A Major allergen ALT A 1; 43.0 5.3 0.00018 28.6 0.1 28 64-91 9-38 (133)
19 1yel_A AT1G16640; CESG, protei 27.5 23 0.00079 23.8 1.3 14 170-183 67-80 (104)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=100.00 E-value=1.7e-33 Score=215.60 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=116.7
Q ss_pred CCCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcC-CCCCeEEEEEEEccCC-CCCceEEEEEEEEEEcCCC
Q 046711 65 YSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDI-GAADHLSMFLILENFT-VENVQVYAEFTLRIWDQLG 142 (209)
Q Consensus 65 ~~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~-~~~~~lSlyL~l~~~~-~~~~~~~~~f~l~ilnq~~ 142 (209)
..++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+.. +.++||||||+|.... +.+|++.|+|+|+|+||++
T Consensus 17 ~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~~l~l~~~~~ 95 (155)
T 2foj_A 17 SEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRD 95 (155)
T ss_dssp SEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEEEEEECCSSC
T ss_pred CCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEEEEEEEcCCC
Confidence 4689999999999996 78999999999999999999999865 3578999999996543 4579999999999999998
Q ss_pred CCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeecCC
Q 046711 143 QSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISEPI 209 (209)
Q Consensus 143 ~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~~~ 209 (209)
+..+..+. ..++|.....+|||++||++++|+++++|||+||+|+|+|+|+|.++||.+
T Consensus 96 ~~~~~~~~--------~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 96 DEKSFSRR--------ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp GGGCEEEE--------EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CcceEEec--------cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 55566555 678898767899999999999999888999999999999999999999853
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.97 E-value=5e-32 Score=205.27 Aligned_cols=133 Identities=27% Similarity=0.480 Sum_probs=113.1
Q ss_pred eCCCCEEEEEEcCccccC---CCeeecccEEecCc---eEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEE
Q 046711 63 YAYSSKYVWKIDNFSKLG---AGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLR 136 (209)
Q Consensus 63 ~~~~~~~~w~I~nfS~l~---~~~~~S~~F~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~ 136 (209)
+...++|+|+|+|||.++ ++.+.|++|.+||+ +|+|++||+|+..+..+||||||+|.+. +.|+++|+|+|+
T Consensus 7 ~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~--~~w~v~a~f~l~ 84 (145)
T 3ivv_A 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFS 84 (145)
T ss_dssp CCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC--SSSEEEEEEEEE
T ss_pred cEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC--CCCcEEEEEEEE
Confidence 456789999999999986 57899999999996 9999999999876667999999999874 579999999999
Q ss_pred EEcCCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEee
Q 046711 137 IWDQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI 205 (209)
Q Consensus 137 ilnq~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~ 205 (209)
|+||+++ .+.... ....++|. ...+|||++||++++|++++++||+||+|+|+|+|+|+++
T Consensus 85 llnq~~~-~~~~~~------~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 85 ILNAKGE-ETKAME------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EECTTSC-EEEEEE------CSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEecCCC-ceeeec------ccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 9999984 332211 01467887 4689999999999999877789999999999999999863
No 3
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.97 E-value=1.8e-31 Score=208.97 Aligned_cols=139 Identities=22% Similarity=0.336 Sum_probs=115.1
Q ss_pred eCCCCEEEEEEcCccccCC-------CeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEE
Q 046711 63 YAYSSKYVWKIDNFSKLGA-------GYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVY 130 (209)
Q Consensus 63 ~~~~~~~~w~I~nfS~l~~-------~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~ 130 (209)
.+.++.|+|+|+|||.+++ ..+.|++|.+| ||+|+|++||+|+..+.++||||||+|.+++ ...|++.
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 3578999999999999862 27999999999 9999999999998876679999999998764 3579999
Q ss_pred EEEEEEEEcCCCCCccEEEEeeeeccccceeEecC----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711 131 AEFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHT----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG 204 (209)
Q Consensus 131 ~~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~ 204 (209)
|+|+|+|+||.++..++.+. ++ +....+.|+. ...+|||.+||++++|+++++|||+||+|+|+|+|.|.+
T Consensus 100 a~~~l~Lldq~~~~~~~~~~--~~-~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVET--FK-ADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEE--EE-CCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred EEEEEEEEcCCCCcceeEEe--ec-cCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 99999999999866665432 11 1113456763 357899999999999998889999999999999997754
No 4
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.96 E-value=3.6e-30 Score=204.69 Aligned_cols=140 Identities=21% Similarity=0.274 Sum_probs=113.5
Q ss_pred CCCCEEEEEEcCccccCC-------CeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEE
Q 046711 64 AYSSKYVWKIDNFSKLGA-------GYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYA 131 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~~-------~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~ 131 (209)
..++.|+|+|+|||.+++ +.+.|++|.+| ||+|+|.+||+|++.+.++||||||++.+++ ...|++.+
T Consensus 37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~a 116 (198)
T 4ghu_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (198)
T ss_dssp CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEEE
Confidence 568999999999999863 68999999999 9999999999999876789999999999765 45899999
Q ss_pred EEEEEEEcCCCCCccEEEEeeeeccc---cceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeec
Q 046711 132 EFTLRIWDQLGQSMNLFKVKCVSLHA---INKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISE 207 (209)
Q Consensus 132 ~f~l~ilnq~~~~~~~~k~~~~~~~~---~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~ 207 (209)
+|+|+|+||.++..++... +...+ ...+.|+..+.+|||++||++++|++ +|||+||+|+|+|+|.|+...+
T Consensus 117 ~~~l~Lldq~~~~~~~~~~--~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 117 KVTLMLMDQGSSRRHLGDA--FKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CEEEEECCCSTTCCCEEEE--ECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEEcCCCCccceEEE--eecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence 9999999999766666443 11100 01122333467899999999999996 8999999999999999876543
No 5
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.96 E-value=1.5e-29 Score=200.26 Aligned_cols=135 Identities=23% Similarity=0.343 Sum_probs=111.4
Q ss_pred CCCEEEEEEcCccccC-----CC--eeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEEE
Q 046711 65 YSSKYVWKIDNFSKLG-----AG--YKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYAE 132 (209)
Q Consensus 65 ~~~~~~w~I~nfS~l~-----~~--~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~~ 132 (209)
..++|+|+|+|||.++ ++ .++|++|.+| ||+|+|++||+|++.+.++|||+||++.+++ ...|+++++
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 6899999999999986 34 5999999999 9999999999998876789999999998765 357999999
Q ss_pred EEEEEEcCCCCCccEEEEeeeeccccceeEecCC----CCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711 133 FTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHTP----KSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG 204 (209)
Q Consensus 133 f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~~----~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~ 204 (209)
|+|+|+||.++..++.+. +. +....++|... +.+|||++||++++|++ +|||+||+|+|+|+|.|.+
T Consensus 118 ~~l~lldq~~~~~~~~~~--~~-~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDA--FK-PDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEE--EC-CCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCccceEEE--Ee-cCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 999999999866666432 11 11122557532 47899999999999997 6999999999999997754
No 6
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.96 E-value=1.2e-29 Score=200.86 Aligned_cols=136 Identities=21% Similarity=0.365 Sum_probs=109.9
Q ss_pred CCCCEEEEEEcCccccCC-----C--eeecccEEe--cCceEEEEEecCCCcCCCCCeEEEEEEEccCC--C-CCceEEE
Q 046711 64 AYSSKYVWKIDNFSKLGA-----G--YKESQAFGA--GNHKWKIELHPAGIDIGAADHLSMFLILENFT--V-ENVQVYA 131 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~~-----~--~~~S~~F~~--gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~-~~~~~~~ 131 (209)
...+.|+|+|+|||.+++ + .++||+|.+ |||+|+|.+||+|++.+.++||||||+|.+++ + ..|++.+
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 578999999999999862 2 599999999 99999999999998866679999999998875 2 6899999
Q ss_pred EEEEEEEcCCCCCccEEEEeeeeccccceeEec----CCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711 132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFH----TPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG 204 (209)
Q Consensus 132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~----~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~ 204 (209)
+|+|+|+||.++ .++... +. +......|. ..+.+|||++||++++|++ ++|||+||+|+|+|+|+|.+
T Consensus 120 ~~~l~lldq~~~-~~~~~~--~~-~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNR-EHVIDA--FR-PDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSS-CCEEEE--EC-CCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCC-ceeeEe--ec-cCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 999999999984 554332 11 000112343 2356899999999999995 47999999999999998854
No 7
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.96 E-value=5.8e-29 Score=191.36 Aligned_cols=136 Identities=22% Similarity=0.246 Sum_probs=104.9
Q ss_pred CCCEEEEEEcCccccC-----CC--eeecccEEec--CceEEEEEecCCCcCC-CCCeEEEEEEEccCC---CCCceEEE
Q 046711 65 YSSKYVWKIDNFSKLG-----AG--YKESQAFGAG--NHKWKIELHPAGIDIG-AADHLSMFLILENFT---VENVQVYA 131 (209)
Q Consensus 65 ~~~~~~w~I~nfS~l~-----~~--~~~S~~F~~g--g~~W~l~vyP~G~~~~-~~~~lSlyL~l~~~~---~~~~~~~~ 131 (209)
..+.|+|+|+|||.++ ++ .+.|++|.+| ||+|+|++||+|+..+ .++||||||++.+++ ...|++.|
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 5689999999999985 34 8999999999 9999999999998754 378999999998765 45699999
Q ss_pred EEEEEEEcCCCCC--ccEEEEeeeeccccceeEecC-----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711 132 EFTLRIWDQLGQS--MNLFKVKCVSLHAINKFWFHT-----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG 204 (209)
Q Consensus 132 ~f~l~ilnq~~~~--~~~~k~~~~~~~~~~~~~F~~-----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~ 204 (209)
+|+|+|+||.++. .++... +.. .+....|.. ...+|||++||++++|+. +|||+||+|+|+|+|.|+.
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~--~~~-~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~ 157 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEI--MDA-KPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRF 157 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEE--EEC-CTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC--
T ss_pred eEEEEEEcCCCccccccceEE--eec-CCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEee
Confidence 9999999998742 222221 110 001123432 123799999999999995 8999999999999999976
Q ss_pred e
Q 046711 205 I 205 (209)
Q Consensus 205 ~ 205 (209)
+
T Consensus 158 ~ 158 (160)
T 1lb6_A 158 D 158 (160)
T ss_dssp -
T ss_pred c
Confidence 4
No 8
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.95 E-value=2.5e-29 Score=194.72 Aligned_cols=136 Identities=21% Similarity=0.355 Sum_probs=108.9
Q ss_pred CCCCEEEEEEcCccccC-----CC--eeecccEE--ecCceEEEEEecCCCcCCCCCeEEEEEEEccCC--C-CCceEEE
Q 046711 64 AYSSKYVWKIDNFSKLG-----AG--YKESQAFG--AGNHKWKIELHPAGIDIGAADHLSMFLILENFT--V-ENVQVYA 131 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~-----~~--~~~S~~F~--~gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~--~-~~~~~~~ 131 (209)
...++|+|+|+|||.++ ++ .++||+|. +|||+|+|++||+|+..+.++||||||+|.+++ . ..|++.+
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 46899999999999986 33 38999996 789999999999998766679999999998765 2 6899999
Q ss_pred EEEEEEEcCCCCCccEEEEeeeeccccceeEecC----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEe
Q 046711 132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHT----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLG 204 (209)
Q Consensus 132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~ 204 (209)
+|+|+|+||.+ ..+.... .. ++...+.|.. .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus 96 ~~~l~ll~q~~-~~~~~~~--~~-~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNN-REHVIDA--FR-PDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTS-SCCEEEE--EC-CCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCC-Cccceec--cc-cCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 99999999998 4555432 10 0001224542 3578999999999999973 3999999999999998753
No 9
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.95 E-value=5.1e-29 Score=202.19 Aligned_cols=137 Identities=22% Similarity=0.312 Sum_probs=112.4
Q ss_pred CCCCEEEEEEcCccccC-----C--CeeecccEEec--CceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEEE
Q 046711 64 AYSSKYVWKIDNFSKLG-----A--GYKESQAFGAG--NHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVYA 131 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~-----~--~~~~S~~F~~g--g~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~~ 131 (209)
...+.|+|+|+|||.++ + ..++|++|.+| ||+|+|++||+|++.+.++||||||++.+++ ...|++.+
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 47899999999999986 2 37999999999 9999999999998876789999999998765 45799999
Q ss_pred EEEEEEEcCCCCCccEEEEeeeeccccceeEecC----CCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEee
Q 046711 132 EFTLRIWDQLGQSMNLFKVKCVSLHAINKFWFHT----PKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI 205 (209)
Q Consensus 132 ~f~l~ilnq~~~~~~~~k~~~~~~~~~~~~~F~~----~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~ 205 (209)
+|+|+|+||.++..++.+. ++. +...++|.. .+.+|||++||++++|++ +|||+||+|+|+|+|.|.+.
T Consensus 153 ~~~l~lldq~~~~~~~~~~--~~~-~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~ 225 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDA--FKP-DPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL 225 (228)
T ss_dssp CEEEEECCCSSSCCCEEEE--ECC-CTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTS
T ss_pred EEEEEEEcCCCCccceeee--ecC-CCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccc
Confidence 9999999999865565432 111 112234642 356899999999999997 79999999999999988654
No 10
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.94 E-value=3.6e-27 Score=199.00 Aligned_cols=131 Identities=27% Similarity=0.498 Sum_probs=107.7
Q ss_pred CCCEEEEEEcCccccC---CCeeecccEEecCc---eEEEEEecCCCcCCCCCeEEEEEEEccCCCCCceEEEEEEEEEE
Q 046711 65 YSSKYVWKIDNFSKLG---AGYKESQAFGAGNH---KWKIELHPAGIDIGAADHLSMFLILENFTVENVQVYAEFTLRIW 138 (209)
Q Consensus 65 ~~~~~~w~I~nfS~l~---~~~~~S~~F~~gg~---~W~l~vyP~G~~~~~~~~lSlyL~l~~~~~~~~~~~~~f~l~il 138 (209)
..++|+|+|+|||.++ ++.+.|++|.+||+ +|+|.+||+|...+.++|||+||+|.++ .+|++.|+|+|+|+
T Consensus 5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~--~~~~v~a~~~~~l~ 82 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--PKSEVRAKFKFSIL 82 (312)
T ss_dssp EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC--CC-CEEEEEEEEEE
T ss_pred EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC--CCCcEEEEEEEEEE
Confidence 3578999999999997 78899999999985 9999999999876667999999999874 57999999999999
Q ss_pred cCCCCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEee
Q 046711 139 DQLGQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGI 205 (209)
Q Consensus 139 nq~~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~ 205 (209)
||+++. +.... ....+.|.. ..+|||++||++++|+++++|||+||+++|+|+|+|++.
T Consensus 83 ~~~~~~-~~~~~------~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 83 NAKGEE-TKAME------SQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp CTTSCE-EEEEE------CSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred eCCCCc-ccccc------cCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 999843 32221 015678874 568999999999999987789999999999999999953
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=211.11 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=114.2
Q ss_pred CCCCEEEEEEcCccccCCCeeecccEEecCceEEEEEecCCCcCC-CCCeEEEEEEEccCC-CCCceEEEEEEEEEEcCC
Q 046711 64 AYSSKYVWKIDNFSKLGAGYKESQAFGAGNHKWKIELHPAGIDIG-AADHLSMFLILENFT-VENVQVYAEFTLRIWDQL 141 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~~~~~~S~~F~~gg~~W~l~vyP~G~~~~-~~~~lSlyL~l~~~~-~~~~~~~~~f~l~ilnq~ 141 (209)
...++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+ .++||||||.|.+.. +.+|.+.|+|+|+|+||.
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f~l~l~n~~ 106 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYR 106 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTCCCSSCBEEEEEEEEECCTT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEEEcCC
Confidence 347899999999999986 88999999999999999999997543 578999999998755 668999999999999999
Q ss_pred CCCccEEEEeeeeccccceeEecCCCCCCcccceeeccccCCCCCCeeECCEEEEEEEEEEEeeec
Q 046711 142 GQSMNLFKVKCVSLHAINKFWFHTPKSSWGCPRFVSLSELNDPETGFLVNDVCVVEAEVTVLGISE 207 (209)
Q Consensus 142 ~~~~~~~k~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~gyl~~D~l~i~~~v~v~~~t~ 207 (209)
++..+..+. ..++|.....+|||.+||++++|.++++|||+||+++|+|+|+|...+|
T Consensus 107 ~~~~~~~~~--------~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g 164 (522)
T 2f1z_A 107 DDEKSFSRR--------ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 164 (522)
T ss_dssp CGGGCEEEE--------CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred CCccceecc--------ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence 866666666 7788986678899999999999988779999999999999999976554
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.52 E-value=2.3e-14 Score=129.55 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=103.6
Q ss_pred eCCCCEEEEEEcCccccC---CCeeecccEEe-cCceEEEEEecCCCcCCCCCeEEEEEEEccCC---CCCceEE-EEEE
Q 046711 63 YAYSSKYVWKIDNFSKLG---AGYKESQAFGA-GNHKWKIELHPAGIDIGAADHLSMFLILENFT---VENVQVY-AEFT 134 (209)
Q Consensus 63 ~~~~~~~~w~I~nfS~l~---~~~~~S~~F~~-gg~~W~l~vyP~G~~~~~~~~lSlyL~l~~~~---~~~~~~~-~~f~ 134 (209)
+..+..+.|+|+||+++. +..++||+|.. .||+++|.+||++ ..++|||++|..++ .+.|++. -+++
T Consensus 402 ~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~WP~~~~q~t 476 (592)
T 4gwm_A 402 ETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH-----VTNAGIYFHLISGANDDQLQWPCPWQQAT 476 (592)
T ss_dssp SSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS-----SSEEEEEEEEECCTTGGGSCSSCCSEEEE
T ss_pred eCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC-----CceEEEEEEEecCCCCCCccCCCCCCEEE
Confidence 577889999999999985 56899999974 6999999999975 57999999999987 7899994 7899
Q ss_pred EEEEcCCCCCcc-EEEEeeeecccc-----------------ceeEecC-----CCCCCcccceeeccccCCCCCCeeEC
Q 046711 135 LRIWDQLGQSMN-LFKVKCVSLHAI-----------------NKFWFHT-----PKSSWGCPRFVSLSELNDPETGFLVN 191 (209)
Q Consensus 135 l~ilnq~~~~~~-~~k~~~~~~~~~-----------------~~~~F~~-----~~~~wG~~~Fi~~~~L~~~~~gyl~~ 191 (209)
+.|+||+.+... +..+.+++..+. ....|.. .+.+|||+.||+++.|.. ..||+|
T Consensus 477 ~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~ 554 (592)
T 4gwm_A 477 MTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG 554 (592)
T ss_dssp EEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred EEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence 999999864321 122222321110 0011221 246789999999999986 689999
Q ss_pred CEEEEEEEEEEEe
Q 046711 192 DVCVVEAEVTVLG 204 (209)
Q Consensus 192 D~l~i~~~v~v~~ 204 (209)
|+|+|.++|+-+.
T Consensus 555 d~~~i~~~~eD~~ 567 (592)
T 4gwm_A 555 DDVYILLTVEDIS 567 (592)
T ss_dssp TBEEEEEEEEECG
T ss_pred CeEEEEEEEEeCc
Confidence 9999999998764
No 13
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=98.75 E-value=3.3e-09 Score=80.14 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=42.7
Q ss_pred ceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-ece
Q 046711 5 ERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KER 50 (209)
Q Consensus 5 ~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~ 50 (209)
.|+|+....+|||.+||+|++|+||.+|||+||+++|+++|.| +|+
T Consensus 105 ~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 105 SHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp EEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred EEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 5789888889999999999999999999999999999999999 664
No 14
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=98.54 E-value=1.3e-08 Score=76.01 Aligned_cols=43 Identities=33% Similarity=0.508 Sum_probs=39.2
Q ss_pred cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711 4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV 47 (209)
Q Consensus 4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~ 47 (209)
..|+|+ ...+|||.+||++++|+|+++|||+||+++|+++|.|
T Consensus 100 ~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V 142 (145)
T 3ivv_A 100 RAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142 (145)
T ss_dssp SCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEE
T ss_pred ceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEE
Confidence 468897 4689999999999999999999999999999999987
No 15
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=97.97 E-value=1.9e-06 Score=77.12 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=42.9
Q ss_pred cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE-ece
Q 046711 4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV-KER 50 (209)
Q Consensus 4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~-~~~ 50 (209)
..|+|+....+|||.+||++++|.|+.+|||+||++.|+++|.| .|+
T Consensus 116 ~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 116 ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 35889888899999999999999999999999999999999999 654
No 16
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=97.93 E-value=2.3e-06 Score=71.39 Aligned_cols=43 Identities=33% Similarity=0.460 Sum_probs=39.1
Q ss_pred cceeecCCCcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711 4 KERRFNGLKLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV 47 (209)
Q Consensus 4 ~~~~f~~~~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~ 47 (209)
..|+|+.. .+|||.+||+|++|+++.+|||+||+++|+++|.|
T Consensus 96 ~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v 138 (312)
T 3hqi_A 96 RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSV 138 (312)
T ss_dssp SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEE
T ss_pred CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEE
Confidence 46788854 58999999999999999999999999999999999
No 17
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=84.21 E-value=0.29 Score=44.22 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=29.8
Q ss_pred CcccccccceecccccCCCCCEEEcCeEEEeEEEEE
Q 046711 12 KLQWGLDQFIPLEAFNDSTNGYLVKDTCVFGAEVFV 47 (209)
Q Consensus 12 ~~~~G~~~fi~~~~l~~~~~gyl~~d~~~~~~~v~~ 47 (209)
...|||..||+++.|. +..||+||++.|-++|.-
T Consensus 532 ~~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD 565 (592)
T 4gwm_A 532 GGGYGTSAFITHERLK--SRDFIKGDDVYILLTVED 565 (592)
T ss_dssp EEEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEE
T ss_pred cCCcCccccccHHHHh--hcCcccCCeEEEEEEEEe
Confidence 3468999999999998 567999999999999876
No 18
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=42.97 E-value=5.3 Score=28.65 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=21.9
Q ss_pred CCCCEEEEEEcCccccC--CCeeecccEEe
Q 046711 64 AYSSKYVWKIDNFSKLG--AGYKESQAFGA 91 (209)
Q Consensus 64 ~~~~~~~w~I~nfS~l~--~~~~~S~~F~~ 91 (209)
+.++.+.|+|.+|+..| +..+.|=.|.+
T Consensus 9 ~~~gd~vwkIs~F~~RKpeGty~nsvsFnI 38 (133)
T 3v0r_A 9 TTEGDYVWKISEFYGRKPEGTYYNSLGFNI 38 (133)
T ss_dssp CCCCTTEEEEEEEEEEETTSSSCSEEEEEE
T ss_pred ccCCceEEEeeeeeeEcCCCCceeeEEEEE
Confidence 35788999999999987 66677767754
No 19
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=27.49 E-value=23 Score=23.76 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=11.8
Q ss_pred CcccceeeccccCC
Q 046711 170 WGCPRFVSLSELND 183 (209)
Q Consensus 170 wG~~~Fi~~~~L~~ 183 (209)
-||.+|+.-..|..
T Consensus 67 ~GW~~Fv~~~~L~~ 80 (104)
T 1yel_A 67 VGWENFVKDNNLED 80 (104)
T ss_dssp TTHHHHHHHHTCCT
T ss_pred cChHHHHHHcCCCC
Confidence 38999999988885
Done!