BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046712
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 164/598 (27%), Positives = 281/598 (46%), Gaps = 73/598 (12%)
Query: 25 TGVTCGHRRQRVTGLDLRHQSVGGVLSPF--VGNLNFLRSINLPNNS--FRGKIPHEVGN 80
+G C +T LDL S+ G ++ +G+ + L+ +N+ +N+ F GK+ +
Sbjct: 94 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-K 149
Query: 81 LFRLQNLTLTNNYF-----LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL 135
L L+ L L+ N +G +L+D C L S NK+ G+ V +S + L+ L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGD--VDVSRCVNLEFL 205
Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP 195
+++ N+ +P +G+ SALQ +D+ GN+L G IS L N++ NQF G IP
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 196 PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGL 255
P+ + SLQY+ + N+F G +P L +SGN+ G++ + + L+ L
Sbjct: 265 PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 256 EINRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN 314
++ N FSG++ ++ +++ L L+L N L ++ L LDL SN
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSN 378
Query: 315 RFGG-VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
F G +LP N T+ E+ + +N + IP ++N L +L + N L+GTIP ++
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 374 GELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTR 433
G L ++ L L N L G IP + N+L G+IP NC NL ++
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 434 KNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493
N+L+G +P+ + R+ G+ P ++G+ ++L+ LD+++N+F+G IP
Sbjct: 499 NNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 494 L------------------------------GGCTSLEYLGM---QDNSFTISIPSTLSS 520
+ G LE+ G+ Q N + P ++S
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 521 L-------------KSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
S+ LD+S N LSG+IP+ + ++ +L LN+ +N G +P E
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 168/593 (28%), Positives = 257/593 (43%), Gaps = 71/593 (11%)
Query: 27 VTCGHRRQRVTGLDLRHQS------VGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGN 80
V+ G + + LDL S VG VLS G L + + + N G + +V
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL---KHLAISGNKISGDV--DVSR 198
Query: 81 LFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN 140
L+ L +++N F I L CS L + S NKL G+ IS L++LNI+ N
Sbjct: 199 CVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS-HVRNLISFNVAYNQFSGMIPPIYN 199
G +P L +LQ + + N+ G IP +S L +++ N F G +PP +
Sbjct: 258 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 200 ISSLQYIFIHT-NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSN-ATNLQGLEI 257
SL + N F G +P+D + + L+ +S N +G L +SL+N + +L L++
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 258 NRNLFSGKVSINFSR--LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNR 315
+ N FSG + N + L L L +NN TG L+NC++L L L N
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYL-QNNGFTGK-----IPPTLSNCSELVSLHLSFNY 429
Query: 316 FGGVLPFSLANLST-----------------------TMTEIAIGSNQISDTIPDVIANL 352
G +P SL +LS T+ + + N ++ IP ++N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 353 VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNN 412
NLN + + +N+L G IP IG L+++ IL L+ N G IP+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 413 LQGKIPPS----NGNCQNLILLTTR----KN--------------KLSGIVPRQLLRIIT 450
G IP + +G + R KN + GI QL R+ T
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 451 XXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510
GH N +++ LD+S NM SG IP +G L L + N
Sbjct: 610 RNPCNITSRVYG-GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 511 TISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
+ SIP + L+ + LDLS N L G IPQ + L+ L +++S N+ G +P
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 137/534 (25%), Positives = 245/534 (45%), Gaps = 71/534 (13%)
Query: 39 LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98
LD+ + G S + L+ +N+ +N F G IP L LQ L+L N F G+I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEI 285
Query: 99 LTDLS-HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPA-SIGNLSAL 156
LS C L + S N G +P + +L+ L ++ N+ G+LP ++ + L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 157 QEIDVRGNRLGGRIPSTISHVR-NLISFNVAYNQFSGMIPPIYNIS-----SLQYIFIHT 210
+ +D+ N G +P +++++ +L++ +++ N FSG I P N+ +LQ +++
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNTLQELYLQN 403
Query: 211 NRFHGSVP--LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI 268
N F G +P L N L +L +S N L+G++ SL + + L+ L++ N+ G++
Sbjct: 404 NGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS 328
++ L L L N+L TG + + L+NCT L + L +NR G +P + L
Sbjct: 461 ELMYVKTLETLILDFNDL-TG-----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI----GELKS-----I 379
+ + + +N S IP + + +L L + +N GTIP A+ G++ +
Sbjct: 515 N-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 380 QILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIP-------------PSNGNCQN 426
+ +++ + ++ + ++N L + P P+ N +
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 427 LILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMF 486
++ L N LSG +P++ +G++ L L++ N
Sbjct: 634 MMFLDMSYNMLSGYIPKE-------------------------IGSMPYLFILNLGHNDI 668
Query: 487 SGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ 540
SG IP +G L L + N IP +S+L +TE+DLS NNLSG IP+
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 29/342 (8%)
Query: 29 CGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLT 88
C + + + L L++ G + P + N + L S++L N G IP +G+L +L++L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 89 LTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPA 148
L N G+I +L + L N L GEIP +SN L ++++ N L G++P
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 149 SIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIY---------- 198
IG L L + + N G IP+ + R+LI ++ N F+G IP
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 199 NISSLQYIFIHTN----RFHGSVPL--DNGVNLPNLRYFS------ISGNNLTGSLQDSL 246
I+ +Y++I + HG+ L G+ L S I+ G +
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 247 SNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL 306
N ++ L+++ N+ SG + + L LNLG N++ +++ + L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG------DLRGL 682
Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV 348
+LDL SN+ G +P +++ L T +TEI + +N +S IP++
Sbjct: 683 NILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 164/598 (27%), Positives = 281/598 (46%), Gaps = 73/598 (12%)
Query: 25 TGVTCGHRRQRVTGLDLRHQSVGGVLSPF--VGNLNFLRSINLPNNS--FRGKIPHEVGN 80
+G C +T LDL S+ G ++ +G+ + L+ +N+ +N+ F GK+ +
Sbjct: 91 SGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-K 146
Query: 81 LFRLQNLTLTNNYF-----LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL 135
L L+ L L+ N +G +L+D C L S NK+ G+ V +S + L+ L
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGD--VDVSRCVNLEFL 202
Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP 195
+++ N+ +P +G+ SALQ +D+ GN+L G IS L N++ NQF G IP
Sbjct: 203 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 196 PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGL 255
P+ + SLQY+ + N+F G +P L +SGN+ G++ + + L+ L
Sbjct: 262 PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 256 EINRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN 314
++ N FSG++ ++ +++ L L+L N L ++ L LDL SN
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSN 375
Query: 315 RFGG-VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
F G +LP N T+ E+ + +N + IP ++N L +L + N L+GTIP ++
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 374 GELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTR 433
G L ++ L L N L G IP + N+L G+IP NC NL ++
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 434 KNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493
N+L+G +P+ + R+ G+ P ++G+ ++L+ LD+++N+F+G IP
Sbjct: 496 NNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 494 L------------------------------GGCTSLEYLGM---QDNSFTISIPSTLSS 520
+ G LE+ G+ Q N + P ++S
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 521 L-------------KSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565
S+ LD+S N LSG+IP+ + ++ +L LN+ +N G +P E
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 168/593 (28%), Positives = 257/593 (43%), Gaps = 71/593 (11%)
Query: 27 VTCGHRRQRVTGLDLRHQS------VGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGN 80
V+ G + + LDL S VG VLS G L + + + N G + +V
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL---KHLAISGNKISGDV--DVSR 195
Query: 81 LFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN 140
L+ L +++N F I L CS L + S NKL G+ IS L++LNI+ N
Sbjct: 196 CVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS-HVRNLISFNVAYNQFSGMIPPIYN 199
G +P L +LQ + + N+ G IP +S L +++ N F G +PP +
Sbjct: 255 QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 200 ISSLQYIFIHT-NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSN-ATNLQGLEI 257
SL + N F G +P+D + + L+ +S N +G L +SL+N + +L L++
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 258 NRNLFSGKVSINFSR--LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNR 315
+ N FSG + N + L L L +NN TG L+NC++L L L N
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYL-QNNGFTGK-----IPPTLSNCSELVSLHLSFNY 426
Query: 316 FGGVLPFSLANLST-----------------------TMTEIAIGSNQISDTIPDVIANL 352
G +P SL +LS T+ + + N ++ IP ++N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 353 VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNN 412
NLN + + +N+L G IP IG L+++ IL L+ N G IP+ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 413 LQGKIPPS----NGNCQNLILLTTR----KN--------------KLSGIVPRQLLRIIT 450
G IP + +G + R KN + GI QL R+ T
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 451 XXXXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510
GH N +++ LD+S NM SG IP +G L L + N
Sbjct: 607 RNPCNITSRVYG-GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 511 TISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
+ SIP + L+ + LDLS N L G IPQ + L+ L +++S N+ G +P
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 151/561 (26%), Positives = 242/561 (43%), Gaps = 77/561 (13%)
Query: 40 DLRHQSVGGVLSPFVGNLNFLRSINLP-----NNSFRGKIPHEVGNLFRLQNLTLTNNYF 94
+L+H ++ G + G+++ R +NL +N+F IP +G+ LQ+L ++ N
Sbjct: 176 ELKHLAISG--NKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 95 LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASI-GNL 153
G +S C+ L S+N+ G IP L LQ L++AEN G++P + G
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 154 SALQEIDVRGNRLGGRIP-------------------------STISHVRNLISFNVAYN 188
L +D+ GN G +P T+ +R L ++++N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 189 QFSGMIPP-IYNIS-SLQYIFIHTNRFHGSVPLDNGVNLPN--LRYFSISGNNLTGSLQD 244
+FSG +P + N+S SL + + +N F G + L N P L+ + N TG +
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 245 SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304
+LSN + L L ++ N SG + + L L L L N L +L ++
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK------ 463
Query: 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
LE L L N G +P L+N T + I++ +N+++ IP I L NL L + +N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNLQGK--IPPSNG 422
+G IP +G+ +S+ L LN N GTIP++ N + GK + N
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIAGKRYVYIKND 578
Query: 423 NCQNLILLTTRKNKLSGIVPRQLLRIIT-----------------------XXXXXXXXX 459
+ + GI QL R+ T
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 460 XXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS 519
G+ P ++G++ L L++ N SG IP +G L L + N IP +S
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 520 SLKSITELDLSRNNLSGHIPQ 540
+L +TE+DLS NNLSG IP+
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPE 719
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 29/342 (8%)
Query: 29 CGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLT 88
C + + + L L++ G + P + N + L S++L N G IP +G+L +L++L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 89 LTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPA 148
L N G+I +L + L N L GEIP +SN L ++++ N L G++P
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 149 SIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIY---------- 198
IG L L + + N G IP+ + R+LI ++ N F+G IP
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 199 NISSLQYIFIHTN----RFHGSVPL--DNGVNLPNLRYFS------ISGNNLTGSLQDSL 246
I+ +Y++I + HG+ L G+ L S I+ G +
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 247 SNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL 306
N ++ L+++ N+ SG + + L LNLG N++ +++ + L
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG------DLRGL 679
Query: 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV 348
+LDL SN+ G +P +++ L T +TEI + +N +S IP++
Sbjct: 680 NILDLSSNKLDGRIPQAMSAL-TMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 10/208 (4%)
Query: 122 IPVKISNLLMLQILNIAE-NHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL 180
IP ++NL L L I N+L G +P +I L+ L + + + G IP +S ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 181 ISFNVAYNQFSGMIPP-IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT 239
++ + +YN SG +PP I ++ +L I NR G++P G +IS N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 240 GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
G + + +N NL ++++RN+ G S+ F +N +++L +N+L DL + L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF----DLGKVGL 242
Query: 300 LTNCTKLEVLDLHSNRFGGVLPFSLANL 327
N L LDL +NR G LP L L
Sbjct: 243 SKN---LNGLDLRNNRIYGTLPQGLTQL 267
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 97/220 (44%), Gaps = 3/220 (1%)
Query: 345 IPDVIANLVNLNALGVES-NQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXX 403
IP +ANL LN L + N L G IP AI +L + L++ + G IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 404 XXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXX 463
N L G +PPS + NL+ +T N++SG +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS 523
G P NL NL +D+S NM G+ G + + + + NS + + K+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 524 ITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
+ LDL N + G +PQ L L FL LN+S+N+ G++P
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 31/292 (10%)
Query: 1 MKSQLQDPLGVTSSWNNSINLC--QWTGVTCGHRRQ--RVTGLDLRHQSVGGVLSPFVGN 56
+K L +P + SSW + + C W GV C Q RV LDL
Sbjct: 14 IKKDLGNPTTL-SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS-------------- 58
Query: 57 LNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTN-NYFLGKILTDLSHCSNLMKFEASN 115
+NLP IP + NL L L + N +G I ++ + L ++
Sbjct: 59 -----GLNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS 175
+ G IP +S + L L+ + N L G LP SI +L L I GNR+ G IP +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 176 HVRNLI-SFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSIS 234
L S ++ N+ +G IPP + +L ++ + N G + G + N + ++
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLA 229
Query: 235 GNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
N+L L + + NL GL++ N G + ++L+ L LN+ NNL
Sbjct: 230 KNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 55/174 (31%)
Query: 39 LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRL-QNLTLTNNYFLGK 97
LD + ++ G L P + +L L I N G IP G+ +L ++T++ N GK
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 98 I----------LTDLSHCSNLMKFEAS--------------------------------- 114
I DLS N+++ +AS
Sbjct: 190 IPPTFANLNLAFVDLSR--NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 115 -----NNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG 163
NN++ G +P ++ L L LN++ N+L G++P GN LQ DV
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN---LQRFDVSA 297
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY 93
+ + GLDLR+ + G L + L FL S+N+ N+ G+IP + GNL R NN
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
Query: 94 FL 95
L
Sbjct: 303 CL 304
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + I P+ N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 100
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
PL N NL L F N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
+LN G N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 154 QQLNFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 202
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
+NQISD P + L NL+ L + NQL IG L S+
Sbjct: 203 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 237
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 158/335 (47%), Gaps = 42/335 (12%)
Query: 54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
V LN L IN NN P + NL +L ++ + NN +T L++ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTL 114
Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
NN++ P+K NL L L ++ N + +++ L++LQ+++ GN++ P
Sbjct: 115 FNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP-- 167
Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
++++ L +++ N+ S I + +++L+ + N+ PL G+ L NL S+
Sbjct: 168 LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI-LTNLDELSL 223
Query: 234 SGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG---- 287
+GN L+D +L++ TNL L++ N S + S L L+ L LG N +
Sbjct: 224 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Query: 288 -TGTT---------NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
G T N L+ I+ ++N L L L+ N + P S T + +
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFS 334
Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
+N++SD +ANL N+N L NQ++ PLA
Sbjct: 335 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 367
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/468 (24%), Positives = 190/468 (40%), Gaps = 112/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
+ + +NL + SNN+L P+K NL+ L +I +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 92
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
N++ P ++++ NL + NQ + I P+ N+++L + + +N L
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSG 149
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
+L L + GN +T L+N T L+ L+I+ N S +S+ ++L NL L
Sbjct: 150 LTSLQQLNF----GNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 199
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
T N + IT L T L+ L L+ N+ + +LA+L T +T++ + +NQI
Sbjct: 200 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 250
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
S+ P ++ L L L + +NQ++ PLA L ++ L LNEN L P S
Sbjct: 251 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 301
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
N +NL LT N +S I P L +
Sbjct: 302 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 340
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
+ + NL N+ L N S P L T + LG+ D ++T +
Sbjct: 341 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 393
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
SIP+T+ ++ S TE D++ N +P Y +S+
Sbjct: 394 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 436
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 122/292 (41%), Gaps = 75/292 (25%)
Query: 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMT 332
L NL+++N N L IT L N TKL + +++N+ + P LANL T +T
Sbjct: 62 LNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLT 110
Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
+ + +NQI+D P + NL NLN L + SN ++ A+ L S+Q L NF
Sbjct: 111 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQL----NF---- 158
Query: 393 IPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXX 452
+V +L+ N L L NK+S I
Sbjct: 159 --------------GNQVTDLKPL-----ANLTTLERLDISSNKVSDI------------ 187
Query: 453 XXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512
+ + L NL SL ++N S P LG T+L+ L + N +
Sbjct: 188 ---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--L 228
Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564
TL+SL ++T+LDL+ N +S P L L+ L L + N P+
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 278
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + I P+ N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 100
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
PL N NL L F+ N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 101 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 153
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
+LN G N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 154 QQLNFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 202
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
+NQISD P + L NL+ L + NQL IG L S+
Sbjct: 203 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 237
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 158/335 (47%), Gaps = 42/335 (12%)
Query: 54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
V LN L IN NN P + NL +L ++ + NN +T L++ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTL 114
Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
NN++ P+K NL L L ++ N + +++ L++LQ+++ GN++ P
Sbjct: 115 FNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLNF-GNQVTDLKP-- 167
Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
++++ L +++ N+ S I + +++L+ + N+ PL G+ L NL S+
Sbjct: 168 LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI-LTNLDELSL 223
Query: 234 SGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG---- 287
+GN L+D +L++ TNL L++ N S + S L L+ L LG N +
Sbjct: 224 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 277
Query: 288 -TGTT---------NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
G T N L+ I+ ++N L L L+ N + P S T + +
Sbjct: 278 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 334
Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
+N++SD +ANL N+N L NQ++ PLA
Sbjct: 335 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 367
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/468 (24%), Positives = 190/468 (40%), Gaps = 112/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
+ + +NL + SNN+L P+K NL+ L +I +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 92
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
N++ P ++++ NL + NQ + I P+ N+++L + + +N L
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSG 149
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
+L L + GN +T L+N T L+ L+I+ N S +S+ ++L NL L
Sbjct: 150 LTSLQQLNF----GNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 199
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
T N + IT L T L+ L L+ N+ + +LA+L T +T++ + +NQI
Sbjct: 200 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 250
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
S+ P ++ L L L + +NQ++ PLA L ++ L LNEN L P S
Sbjct: 251 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 301
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
N +NL LT N +S I P L +
Sbjct: 302 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 340
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
+ + NL N+ L N S P L T + LG+ D ++T +
Sbjct: 341 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 393
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
SIP+T+ ++ S TE D++ N +P Y +S+
Sbjct: 394 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 436
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 122/292 (41%), Gaps = 75/292 (25%)
Query: 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMT 332
L NL+++N N L IT L N TKL + +++N+ + P LANL T +T
Sbjct: 62 LNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLT 110
Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
+ + +NQI+D P + NL NLN L + SN ++ A+ L S+Q L NF
Sbjct: 111 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQL----NF---- 158
Query: 393 IPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXX 452
+V +L+ N L L NK+S I
Sbjct: 159 --------------GNQVTDLKPL-----ANLTTLERLDISSNKVSDI------------ 187
Query: 453 XXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512
+ + L NL SL ++N S P LG T+L+ L + N +
Sbjct: 188 ---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--L 228
Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564
TL+SL ++T+LDL+ N +S P L L+ L L + N P+
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 278
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 161/385 (41%), Gaps = 62/385 (16%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + I P+ N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 100
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
PL N NL L F N +T D L N TNL LE++ N S
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISD------------ 143
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
I+ L+ T L+ L+ SN+ + P LANL TT+ + I
Sbjct: 144 --------------------ISALSGLTSLQQLNFSSNQVTDLKP--LANL-TTLERLDI 180
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR--GTIP 394
SN++SD V+A L NL +L +NQ++ PL I L ++ L LN N L+ GT+
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLA 236
Query: 395 SSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXX 454
S NN + P +G L L N++S I P L +T
Sbjct: 237 S-----LTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAGLTALTNLEL 290
Query: 455 XXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
+ + NLKNL L + N S P + T L+ L +N +S
Sbjct: 291 NENQLEDI-----SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK--VSD 341
Query: 515 PSTLSSLKSITELDLSRNNLSGHIP 539
S+L++L +I L N +S P
Sbjct: 342 VSSLANLTNINWLSAGHNQISDLTP 366
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 41/335 (12%)
Query: 54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
V LN L IN NN P + NL +L ++ + NN +T L++ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTL 114
Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
NN++ P+K NL L L ++ N + +++ L++LQ+++ N++ P
Sbjct: 115 FNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP-- 168
Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
++++ L +++ N+ S I + +++L+ + N+ PL G+ L NL S+
Sbjct: 169 LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI-LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG---- 287
+GN L+D +L++ TNL L++ N S + S L L+ L LG N +
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 288 -TGTT---------NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
G T N L+ I+ ++N L L L+ N + P S T + +
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 335
Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
+N++SD +ANL N+N L NQ++ PLA
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 132/295 (44%), Gaps = 29/295 (9%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
+ + +NL + SNN+L P+K NL L + + N + P + NL+ L + +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
N++ P + ++ NL ++ N S I + ++SLQ + +N+ PL
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTDLKPL-- 169
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
NL L IS N ++ L+ TNL+ L N S + L NL L+L
Sbjct: 170 -ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
N L D+ + LTN T LDL +N+ + P S T +TE+ +G+NQI
Sbjct: 225 NGNQLK-----DIGTLASLTNLTD---LDLANNQISNLAPLSGL---TKLTELKLGANQI 273
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSS 396
S+ P +A L L L + NQL P I LK++ L L N + P S
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 324
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 119/292 (40%), Gaps = 74/292 (25%)
Query: 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMT 332
L NL+++N N L IT L N TKL + +++N+ + P LANL T +T
Sbjct: 62 LNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLT 110
Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
+ + +NQI+D P + NL NLN L + SN ++ A+ L S+Q L + N +
Sbjct: 111 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL 166
Query: 393 IPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXX 452
P N L L NK+S I
Sbjct: 167 KPL--------------------------ANLTTLERLDISSNKVSDI------------ 188
Query: 453 XXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512
+ + L NL SL ++N S P LG T+L+ L + N +
Sbjct: 189 ---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--L 229
Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564
TL+SL ++T+LDL+ N +S P L L+ L L + N P+
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 160/385 (41%), Gaps = 62/385 (16%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + I P+ N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 100
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
PL N NL L F N +T D L N TNL LE++ N S
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISD------------ 143
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
I+ L+ T L+ L SN+ + P LANL TT+ + I
Sbjct: 144 --------------------ISALSGLTSLQQLSFSSNQVTDLKP--LANL-TTLERLDI 180
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR--GTIP 394
SN++SD V+A L NL +L +NQ++ PL I L ++ L LN N L+ GT+
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLA 236
Query: 395 SSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXX 454
S NN + P +G L L N++S I P L +T
Sbjct: 237 S-----LTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAGLTALTNLEL 290
Query: 455 XXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
+ + NLKNL L + N S P + T L+ L +N +S
Sbjct: 291 NENQLEDI-----SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNK--VSD 341
Query: 515 PSTLSSLKSITELDLSRNNLSGHIP 539
S+L++L +I L N +S P
Sbjct: 342 VSSLANLTNINWLSAGHNQISDLTP 366
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 156/335 (46%), Gaps = 41/335 (12%)
Query: 54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
V LN L IN NN P + NL +L ++ + NN +T L++ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTL 114
Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
NN++ P+K NL L L ++ N + +++ L++LQ++ N++ P
Sbjct: 115 FNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
++++ L +++ N+ S I + +++L+ + N+ PL G+ L NL S+
Sbjct: 169 LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI-LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG---- 287
+GN L+D +L++ TNL L++ N S + S L L+ L LG N +
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 288 -TGTT---------NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
G T N L+ I+ ++N L L L+ N + P S T + +
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFS 335
Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
+N++SD +ANL N+N L NQ++ PLA
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 191/468 (40%), Gaps = 111/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
+ + +NL + SNN+L P+K NL+ L +I +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 92
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
N++ P ++++ NL + NQ + I P+ N+++L + + +N L
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALS- 148
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
L +L+ S S N +T L+N T L+ L+I+ N S +S+ ++L NL L
Sbjct: 149 --GLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 200
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
T N + IT L T L+ L L+ N+ + +LA+L T +T++ + +NQI
Sbjct: 201 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 251
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
S+ P ++ L L L + +NQ++ PLA L ++ L LNEN L P S
Sbjct: 252 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 302
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
N +NL LT N +S I P L +
Sbjct: 303 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 341
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
+ + NL N+ L N S P L T + LG+ D ++T +
Sbjct: 342 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 394
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
SIP+T+ ++ S TE D++ N +P Y +S+
Sbjct: 395 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 437
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 119/292 (40%), Gaps = 74/292 (25%)
Query: 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMT 332
L NL+++N N L IT L N TKL + +++N+ + P LANL T +T
Sbjct: 62 LNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLT 110
Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
+ + +NQI+D P + NL NLN L + SN ++ A+ L S+Q L + N +
Sbjct: 111 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL 166
Query: 393 IPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXX 452
P N L L NK+S I
Sbjct: 167 KPL--------------------------ANLTTLERLDISSNKVSDI------------ 188
Query: 453 XXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512
+ + L NL SL ++N S P LG T+L+ L + N +
Sbjct: 189 ---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--L 229
Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564
TL+SL ++T+LDL+ N +S P L L+ L L + N P+
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 160/385 (41%), Gaps = 62/385 (16%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + I P+ N++ L I ++ N+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 100
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
PL N NL L F N +T D L N TNL LE++ N S
Sbjct: 101 TPLANLTNLTGLTLF---NNQITDI--DPLKNLTNLNRLELSSNTISD------------ 143
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
I+ L+ T L+ L SN+ + P LANL TT+ + I
Sbjct: 144 --------------------ISALSGLTSLQQLSFSSNQVTDLKP--LANL-TTLERLDI 180
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR--GTIP 394
SN++SD V+A L NL +L +NQ++ PL I L ++ L LN N L+ GT+
Sbjct: 181 SSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGTLA 236
Query: 395 SSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXX 454
S NN + P +G L L N++S I P L +T
Sbjct: 237 S-----LTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAGLTALTNLEL 290
Query: 455 XXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514
+ + NLKNL L + N S P + T L+ L +N +S
Sbjct: 291 NENQLEDI-----SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK--VSD 341
Query: 515 PSTLSSLKSITELDLSRNNLSGHIP 539
S+L++L +I L N +S P
Sbjct: 342 VSSLANLTNINWLSAGHNQISDLTP 366
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 156/335 (46%), Gaps = 41/335 (12%)
Query: 54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
V LN L IN NN P + NL +L ++ + NN +T L++ +NL
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTL 114
Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
NN++ P+K NL L L ++ N + +++ L++LQ++ N++ P
Sbjct: 115 FNNQITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
++++ L +++ N+ S I + +++L+ + N+ PL G+ L NL S+
Sbjct: 169 LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI-LTNLDELSL 224
Query: 234 SGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG---- 287
+GN L+D +L++ TNL L++ N S + S L L+ L LG N +
Sbjct: 225 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 278
Query: 288 -TGTT---------NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
G T N L+ I+ ++N L L L+ N + P S T + +
Sbjct: 279 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 335
Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
+N++SD +ANL N+N L NQ++ PLA
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 191/468 (40%), Gaps = 111/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
+ + +NL + SNN+L P+K NL+ L +I +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 92
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
N++ P ++++ NL + NQ + I P+ N+++L + + +N L
Sbjct: 93 NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALS- 148
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
L +L+ S S N +T L+N T L+ L+I+ N S +S+ ++L NL L
Sbjct: 149 --GLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 200
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
T N + IT L T L+ L L+ N+ + +LA+L T +T++ + +NQI
Sbjct: 201 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 251
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
S+ P ++ L L L + +NQ++ PLA L ++ L LNEN L P S
Sbjct: 252 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 302
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
N +NL LT N +S I P L +
Sbjct: 303 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 341
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
+ + NL N+ L N S P L T + LG+ D ++T +
Sbjct: 342 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 394
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
SIP+T+ ++ S TE D++ N +P Y +S+
Sbjct: 395 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 437
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 119/292 (40%), Gaps = 74/292 (25%)
Query: 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMT 332
L NL+++N N L IT L N TKL + +++N+ + P LANL T +T
Sbjct: 62 LNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITP--LANL-TNLT 110
Query: 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
+ + +NQI+D P + NL NLN L + SN ++ A+ L S+Q L + N +
Sbjct: 111 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL 166
Query: 393 IPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXX 452
P N L L NK+S I
Sbjct: 167 KPL--------------------------ANLTTLERLDISSNKVSDI------------ 188
Query: 453 XXXXXXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512
+ + L NL SL ++N S P LG T+L+ L + N +
Sbjct: 189 ---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--L 229
Query: 513 SIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564
TL+SL ++T+LDL+ N +S P L L+ L L + N P+
Sbjct: 230 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + I P+ N++ L I ++ N+
Sbjct: 46 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 104
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
PL N NL L F+ N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 105 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 157
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
+L+ G N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 158 QQLSFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 206
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
+NQISD P + L NL+ L + NQL IG L S+
Sbjct: 207 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 241
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 42/332 (12%)
Query: 57 LNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116
LN L IN NN P + NL +L ++ + NN +T L++ +NL NN
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNN 121
Query: 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISH 176
++ P+K NL L L ++ N + +++ L++LQ++ GN++ P +++
Sbjct: 122 QITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLSF-GNQVTDLKP--LAN 174
Query: 177 VRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN 236
+ L +++ N+ S I + +++L+ + N+ PL G+ L NL S++GN
Sbjct: 175 LTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI-LTNLDELSLNGN 230
Query: 237 NLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG-----TG 289
L+D +L++ TNL L++ N S + S L L+ L LG N + G
Sbjct: 231 ----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISPLAG 284
Query: 290 TT---------NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQ 340
T N L+ I+ ++N L L L+ N + P S T + + +N+
Sbjct: 285 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFANNK 341
Query: 341 ISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
+SD +ANL N+N L NQ++ PLA
Sbjct: 342 VSDV--SSLANLTNINWLSAGHNQISDLTPLA 371
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 115/473 (24%), Positives = 192/473 (40%), Gaps = 112/473 (23%)
Query: 97 KILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL 156
K + + + +NL + SNN+L P+K NL+ L
Sbjct: 58 KSIDGVEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKL 91
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
+I + N++ P ++++ NL + NQ + I P+ N+++L + + +N
Sbjct: 92 VDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDI 148
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
L +L L + GN +T L+N T L+ L+I+ N S +S+ ++L NL
Sbjct: 149 SALSGLTSLQQLSF----GNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNL 200
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
L T N + IT L T L+ L L+ N+ + +LA+L T +T++ +
Sbjct: 201 ESL--------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDL 249
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSS 396
+NQIS+ P ++ L L L + +NQ++ PLA L ++ L LNEN L P S
Sbjct: 250 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS 305
Query: 397 XXXXXXXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXX 456
N +NL LT N +S I P L +
Sbjct: 306 --------------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN 339
Query: 457 XXXXXXXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT----- 511
+ + NL N+ L N S P L T + LG+ D ++T
Sbjct: 340 NKVSDV-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 392
Query: 512 ----ISIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
+SIP+T+ ++ S TE D++ N +P Y +S+
Sbjct: 393 YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 440
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 48/271 (17%)
Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV 353
+D + L N T++ + +N+ + P L NL T + +I + +NQI+D P +ANL
Sbjct: 60 IDGVEYLNNLTQI---NFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP--LANLT 111
Query: 354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNL 413
NL L + +NQ+ PL L ++ L L+ N + S +V +L
Sbjct: 112 NLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 169
Query: 414 QGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNL 473
+ N L L NK+S I + + L
Sbjct: 170 KPL-----ANLTTLERLDISSNKVSDI---------------------------SVLAKL 197
Query: 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNN 533
NL SL ++N S P LG T+L+ L + N + TL+SL ++T+LDL+ N
Sbjct: 198 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--LKDIGTLASLTNLTDLDLANNQ 253
Query: 534 LSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564
+S P L L+ L L + N P+
Sbjct: 254 ISNLAP--LSGLTKLTELKLGANQISNISPL 282
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 27/223 (12%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216
Q ++ +RLG + + ++ NL N + NQ + I P+ N++ L I ++ N+
Sbjct: 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADI 105
Query: 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNL 276
PL N NL L F+ N +T D L N TNL LE++ N S ++ S L +L
Sbjct: 106 TPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDISAL--SGLTSL 158
Query: 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336
+L+ G N + + L N T LE LD+ SN+ + LA L+ + IA
Sbjct: 159 QQLSFG---------NQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIAT 207
Query: 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379
+NQISD P + L NL+ L + NQL IG L S+
Sbjct: 208 -NNQISDITP--LGILTNLDELSLNGNQLKD-----IGTLASL 242
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 157/335 (46%), Gaps = 42/335 (12%)
Query: 54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113
V LN L IN NN P + NL +L ++ + NN +T L++ +NL
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTL 119
Query: 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST 173
NN++ P+K NL L L ++ N + +++ L++LQ++ GN++ P
Sbjct: 120 FNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLSF-GNQVTDLKP-- 172
Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
++++ L +++ N+ S I + +++L+ + N+ PL G+ L NL S+
Sbjct: 173 LANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPL--GI-LTNLDELSL 228
Query: 234 SGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG---- 287
+GN L+D +L++ TNL L++ N S + S L L+ L LG N +
Sbjct: 229 NGN----QLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP 282
Query: 288 -TGTT---------NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIG 337
G T N L+ I+ ++N L L L+ N + P S T + +
Sbjct: 283 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFY 339
Query: 338 SNQISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
+N++SD +ANL N+N L NQ++ PLA
Sbjct: 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 372
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 114/468 (24%), Positives = 190/468 (40%), Gaps = 112/468 (23%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
+ + +NL + SNN+L P+K NL+ L +I +
Sbjct: 64 VEYLNNLTQINFSNNQLTDITPLK--------------------------NLTKLVDILM 97
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
N++ P ++++ NL + NQ + I P+ N+++L + + +N L
Sbjct: 98 NNNQIADITP--LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSG 154
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
+L L + GN +T L+N T L+ L+I+ N S +S+ ++L NL L
Sbjct: 155 LTSLQQLSF----GNQVTD--LKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESL-- 204
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
T N + IT L T L+ L L+ N+ + +LA+L T +T++ + +NQI
Sbjct: 205 ------IATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQI 255
Query: 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXX 401
S+ P ++ L L L + +NQ++ PLA L ++ L LNEN L P S
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISPIS----- 306
Query: 402 XXXXXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXX 461
N +NL LT N +S I P L +
Sbjct: 307 ---------------------NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 345
Query: 462 XXGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT---------I 512
+ + NL N+ L N S P L T + LG+ D ++T +
Sbjct: 346 V-----SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 398
Query: 513 SIPSTLSSLK-------------SITELDLSRNNLSGHIPQYLENLSF 547
SIP+T+ ++ S TE D++ N +P Y +S+
Sbjct: 399 SIPNTVKNVTGALIAPATISDGGSYTEPDITWN-----LPSYTNEVSY 441
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 48/271 (17%)
Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV 353
+D + L N T++ + +N+ + P L NL T + +I + +NQI+D P +ANL
Sbjct: 61 IDGVEYLNNLTQI---NFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP--LANLT 112
Query: 354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXXXXXXEVNNL 413
NL L + +NQ+ PL L ++ L L+ N + S +V +L
Sbjct: 113 NLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 170
Query: 414 QGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNL 473
+ N L L NK+S I + + L
Sbjct: 171 KPL-----ANLTTLERLDISSNKVSDI---------------------------SVLAKL 198
Query: 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNN 533
NL SL ++N S P LG T+L+ L + N + TL+SL ++T+LDL+ N
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ--LKDIGTLASLTNLTDLDLANNQ 254
Query: 534 LSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564
+S P L L+ L L + N P+
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISPL 283
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 90/371 (24%), Positives = 155/371 (41%), Gaps = 78/371 (21%)
Query: 25 TGVTCGHRRQRVTGLDLRHQSVGGVLS-PFVGNLNFLRSINLPNNSFRGKIPHEVGNLFR 83
T V + +T L + + V + ++ NL +L NL N P + NL +
Sbjct: 35 TDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYL---NLNGNQITDISP--LSNLVK 89
Query: 84 LQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLK 143
L NL + N ++ L + +NL + + + + P ++NL LN+ NH
Sbjct: 90 LTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNL 145
Query: 144 GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSL 203
L + + N + L + V +++ P I+++ +L S ++ YNQ I P+ +++SL
Sbjct: 146 SDL-SPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISPLASLTSL 201
Query: 204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFS 263
Y + N+ P+ +N T L L+I N +
Sbjct: 202 HYFTAYVNQITDITPV---------------------------ANXTRLNSLKIGNNKIT 234
Query: 264 GKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS 323
+ S L NLS+L E +GT +D++ + + TKL+ L+
Sbjct: 235 -----DLSPLANLSQLTWLE--IGTNQISDINAVK---DLTKLKXLN------------- 271
Query: 324 LANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF 383
+GSNQISD V+ NL LN+L + +NQL IG L ++ LF
Sbjct: 272 ------------VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLF 317
Query: 384 LNENFLRGTIP 394
L++N + P
Sbjct: 318 LSQNHITDIRP 328
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 81/200 (40%), Gaps = 9/200 (4%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
LPN+RY ++ GN L +L TNL L + N + F +L NL L L EN
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344
L + D +T LT L+L N+ LP + + T +TE+ + NQ+
Sbjct: 120 QLQSLPDGVFDKLTNLT------YLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSL 172
Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXX 404
V L L L + NQL L S+Q ++L++N T P
Sbjct: 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 232
Query: 405 XXXXEVNNLQGKIPPSNGNC 424
V N G + P + C
Sbjct: 233 KHSGVVRNSAGSVAPDSAKC 252
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 33/172 (19%)
Query: 99 LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE 158
++ L +NL + N+L+ L L+ L + EN L+ L+ L
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYN------------------- 199
+++ N+L + NL +++YNQ + +++
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 200 ------ISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDS 245
++SLQYI++H N P D P +RY S N +G +++S
Sbjct: 198 DGVFDRLTSLQYIWLHDN------PWD--CTCPGIRYLSEWINKHSGVVRNS 241
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLS 530
+L+NL+ LDIS G +SLE L M NSF + +P + L+++T LDLS
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEG--KVPIEC 566
+ L P +LS L LNMS+N+F P +C
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 26/219 (11%)
Query: 184 NVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT--GS 241
N + QF P + SL+ + +N+ + + V+LP+L + +S N L+ G
Sbjct: 337 NCKFGQF-----PTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGC 388
Query: 242 LQDSLSNATNLQGLEINRNLFSGKVSI--NFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
S +L+ L+++ F+G +++ NF L+ L L+ +NL ++
Sbjct: 389 CSQSDFGTISLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLS 443
Query: 300 LTNCTKLEVLDLHSN-RFGGVLPFSLANLSTTMTEIAIGSNQISDT-IPDVIANLVNLNA 357
L N L++ H+ F G+ N +++ + + N + +PD+ L NL
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 358 LGVESNQLAGTIPLAIGELKSIQILFLNEN--FLRGTIP 394
L + QL P A L S+Q+L ++ N F T P
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITE 526
P L+NL LD+S PT +SL+ L M N+F L S+
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 527 LDLSRNNLSGHIPQYLENL-SFLLFLNMSYNHF 558
LD S N++ Q L++ S L FLN++ N F
Sbjct: 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 94 FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153
FL I T+L NL + S +LE P ++L LQ+LN++ N+ L
Sbjct: 485 FLPDIFTELR---NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541
Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISF-NVAYNQFSGMIPPIYNISSLQYI------ 206
++LQ +D N + + H + ++F N+ N F+ + S LQ+I
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE---HQSFLQWIKDQRQL 598
Query: 207 FIHTNRFHGSVPLD 220
+ R + P D
Sbjct: 599 LVEVERMECATPSD 612
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 153 LSALQEIDVRGNRLGGRIP-STISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHT 210
L L+ +D + + L S +RNLI ++++ I+N +SSL+ + +
Sbjct: 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 211 NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINF 270
N F + D L NL + +S L + ++ ++LQ L ++ N F + +
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Query: 271 SRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG 317
L +L L+ N++ T +L + L L+L N F
Sbjct: 539 KCLNSLQVLDYSLNHIMTSKKQELQHFP-----SSLAFLNLTQNDFA 580
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLS 530
+L+NL+ LDIS G +SLE L M NSF + +P + L+++T LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEG--KVPIEC 566
+ L P +LS L LNMS+N+F P +C
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 26/219 (11%)
Query: 184 NVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT--GS 241
N + QF P + SL+ + +N+ + + V+LP+L + +S N L+ G
Sbjct: 313 NCKFGQF-----PTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGC 364
Query: 242 LQDSLSNATNLQGLEINRNLFSGKVSI--NFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
S T+L+ L+++ F+G +++ NF L+ L L+ +NL ++
Sbjct: 365 CSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLS 419
Query: 300 LTNCTKLEVLDLHSN-RFGGVLPFSLANLSTTMTEIAIGSNQISDT-IPDVIANLVNLNA 357
L N L++ H+ F G+ N +++ + + N + +PD+ L NL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 358 LGVESNQLAGTIPLAIGELKSIQILFLNEN--FLRGTIP 394
L + QL P A L S+Q+L ++ N F T P
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITE 526
P L+NL LD+S PT +SL+ L M N+F L S+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 527 LDLSRNNLSGHIPQYLENL-SFLLFLNMSYNHF 558
LD S N++ Q L++ S L FLN++ N F
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 94 FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153
FL I T+L NL + S +LE P ++L LQ+LN++ N+ L
Sbjct: 461 FLPDIFTELR---NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517
Query: 154 SALQEIDVRGNRLGGRIPSTISHVRNLISF-NVAYNQFSGMIPPIYNISSLQYI------ 206
++LQ +D N + + H + ++F N+ N F+ + S LQ+I
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE---HQSFLQWIKDQRQL 574
Query: 207 FIHTNRFHGSVPLD 220
+ R + P D
Sbjct: 575 LVEVERMECATPSD 588
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 83 RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHL 142
L L LT N L S S+L K A L I +L L+ LN+A N +
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 143 KG-QLPASIGNLSALQEIDVRGNRL 166
+ +LP NL+ L+ +D+ N++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 7/167 (4%)
Query: 153 LSALQEIDVRGNRLGGRIP-STISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHT 210
L L+ +D + + L S +RNLI ++++ I+N +SSL+ + +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 211 NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINF 270
N F + D L NL + +S L + ++ ++LQ L ++ N F + +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 271 SRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG 317
L +L L+ N++ T +L + L L+L N F
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFP-----SSLAFLNLTQNDFA 556
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLS 530
+L+NL+ LDIS G +SLE L M NSF + +P + L+++T LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEG--KVPIEC 566
+ L P +LS L LNMS+N+F P +C
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 219 LDNGV--NLPNLRYFSISGNNLT--GSLQDSLSNATNLQGLEINRNLFSGKVSI--NFSR 272
L +GV L L S+S N L+ G S T+L+ L+++ F+G +++ NF
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLG 99
Query: 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLANLSTTM 331
L+ L L+ +NL ++ L N L++ H+ F G+ N +++
Sbjct: 100 LEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-----NGLSSL 152
Query: 332 TEIAIGSNQISDT-IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNEN--F 388
+ + N + +PD+ L NL L + QL P A L S+Q+L ++ N F
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 389 LRGTIP 394
T P
Sbjct: 213 SLDTFP 218
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITE 526
P L+NL LD+S PT +SL+ L M N+F L S+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 527 LDLSRNNLSGHIPQYLENL-SFLLFLNMSYNHF 558
LD S N++ Q L++ S L FLN++ N F
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 17/222 (7%)
Query: 99 LTDLSHCSNLMKFEASNNKLE-GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQ 157
LT LS SN + F+ ++ + G +K +L ++ ++ N L L L+
Sbjct: 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL---------GLEQLE 104
Query: 158 EIDVRGNRLGGRIP-STISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHG 215
+D + + L S +RNLI ++++ I+N +SSL+ + + N F
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164
Query: 216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN 275
+ D L NL + +S L + ++ ++LQ L ++ N F + + L +
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224
Query: 276 LSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG 317
L L+ N++ T +L + L L+L N F
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFP-----SSLAFLNLTQNDFA 261
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/399 (21%), Positives = 158/399 (39%), Gaps = 52/399 (13%)
Query: 34 QRVTGLDLRHQSVGGV-LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNL--FRLQNLTLT 90
+ +T LDL + + L P G LN L+SI+ +N HE+ L L +L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 91 NNYFLGKILTDLSHCSNLMK------FEASNNKLEGEIPVKISNLL-MLQILN-IAENHL 142
N ++ D C N + + S N +I SN + Q + I +H+
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 143 KGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHV------------------RNLISFN 184
G A G +++ D N G S++ H+ ++L N
Sbjct: 243 MG---AGFG-FHNIKDPD--QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296
Query: 185 VAYNQFSGMI-PPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQ 243
+AYN+ + + Y + +LQ + + N G + N LP + Y + N++
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 244 DSLSNATNLQGLEINRNLFSG--------KVSINFSRLQNLSRLNLGEN--NLGTGTTND 293
+ LQ L++ N + + ++ ++L L ++NL N +L +
Sbjct: 356 QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN 415
Query: 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI-----SDTIPDV 348
LD + L L++L L+ NRF + + ++ ++ +G N + ++ DV
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475
Query: 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNEN 387
L +L L + N L P L +++ L LN N
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 119/306 (38%), Gaps = 22/306 (7%)
Query: 30 GHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTL 89
G R V LDL H V + S L L+ +NL N L LQ L L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 90 TNNYFLGKILT-DLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPA 148
+ N LG++ + + + + N + L LQ L++ +N L
Sbjct: 322 SYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----T 375
Query: 149 SIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFI 208
+I + ++ +I + GN+L +P I+ NLI + + ++ + + LQ + +
Sbjct: 376 TIHFIPSIPDIFLSGNKLVT-LPK-INLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 209 HTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQ-----DSLSNATNLQGLEINRNLFS 263
+ NRF P+L + N L + + D ++LQ L +N N +
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 264 GKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS 323
FS L L L+L N L + NDL LE+LD+ N+ P
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--------ANLEILDISRNQLLAPNPDV 545
Query: 324 LANLST 329
+LS
Sbjct: 546 FVSLSV 551
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 270 FSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
F L +L++L LG N L + G N L T L L+L +N+ LP + +
Sbjct: 48 FDELTSLTQLYLGGNKLQSLPNGVFNKL---------TSLTYLNLSTNQLQS-LPNGVFD 97
Query: 327 LSTTMTEIAIGSNQISDTIPD-VIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN 385
T + E+A+ +NQ+ ++PD V L L L + NQL L S+Q ++L+
Sbjct: 98 KLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156
Query: 386 ENFLRGTIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNC 424
+N T P V N G + P + C
Sbjct: 157 DNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 195
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 106 SNLMKFEASNNKLEGEIPVKISNLLM-LQILNIAENHLKGQLPASIGNLSALQEIDVRGN 164
++L + NKL+ +P + N L L LN++ N L+ L+ L+E+ + N
Sbjct: 52 TSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 165 RLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVPLDNGV 223
+L + L + NQ + +++ ++SLQYI++H N P D
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN------PWD--C 162
Query: 224 NLPNLRYFSISGNNLTGSLQDS 245
P +RY S N +G +++S
Sbjct: 163 TCPGIRYLSEWINKHSGVVRNS 184
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 184 NVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT--GS 241
N + QF P + SL+ + +N+ + + V+LP+L + +S N L+ G
Sbjct: 313 NCKFGQF-----PTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGC 364
Query: 242 LQDSLSNATNLQGLEINRNLFSGKVSI--NFSRLQNLSRLNLGENNLGTGTTNDLDFITL 299
S T+L+ L+++ F+G +++ NF L+ L L+ +NL ++
Sbjct: 365 CSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLS 419
Query: 300 LTNCTKLEVLDLHSN-RFGGVLPFSLANLSTTMTEIAIGSNQISDT-IPDVIANLVNLNA 357
L N L++ H+ F G+ N +++ + + N + +PD+ L NL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 358 LGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
L + QL P A L S+Q+L + N L+
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLS 530
+L+NL+ LDIS G +SLE L M NSF + +P + L+++T LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563
+ L P +LS L LNM+ N + VP
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VP 510
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 34/158 (21%)
Query: 87 LTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQL 146
+T+++N FLG L L H + F+ SN K E V +S L L L+I+ H +
Sbjct: 386 ITMSSN-FLG--LEQLEH----LDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAF 437
Query: 147 PASIGNLSALQEIDVRGNRLGGR-IPSTISHVRNLISFNVAYNQFSGMIPPIYN------ 199
LS+L+ + + GN +P + +RNL +++ Q + P +N
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 200 -------------------ISSLQYIFIHTNRFHGSVP 218
++SLQ I++HTN + S P
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE 139
+L L L LT N L S S+L K A L I +L L+ LN+A
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRL 166
N ++ +LP NL+ L+ +D+ N++
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 174 ISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233
I ++ NL S N++ NQ + I PI + ++ +F++ N+ PL NL NL + +
Sbjct: 62 IQYLPNLTSLNLSNNQITD-ISPIQYLPNVTKLFLNGNKLTDIKPL---ANLKNLGWLFL 117
Query: 234 SGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTN 292
N + LE N G IN L L L LG N +
Sbjct: 118 DENKVKDLSSLKDLKKLKSLSLEHN-----GISDINGLVHLPQLESLYLGNNKITD---- 168
Query: 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANL 352
IT+L+ TKL+ L L N+ ++P LA L T + + + N ISD +A L
Sbjct: 169 ----ITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAGL 219
Query: 353 VNLNALGVESNQ 364
NL+ L + S +
Sbjct: 220 KNLDVLELFSQE 231
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 156 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 210
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 4/181 (2%)
Query: 106 SNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASI-GNLSALQEIDVRGN 164
++ K + +NKL L L++L + +N L+ LPA I L L+ + V N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 165 RLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVPLDNGV 223
+L + NL + NQ + P +++ ++ L Y+ + N S+P
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154
Query: 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283
L +L+ + N L + + T L+ L+++ N F L+ L L L E
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 284 N 284
N
Sbjct: 215 N 215
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 8/180 (4%)
Query: 208 IHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS 267
+ +N+ S+P L LR ++ N L NL+ L + N
Sbjct: 44 LQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102
Query: 268 INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL 327
F +L NL+ L L N L + D +T KL L L N LP + +
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLT------KLTYLSLGYNELQS-LPKGVFDK 155
Query: 328 STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNEN 387
T++ E+ + +NQ+ L L L +++NQL A L+ +++L L EN
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 500 LEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559
LE L + DN L ++ EL L RN L P+ ++L+ L +L++ YN +
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 7/141 (4%)
Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
+ + L++ N S S F RL L L L +N L T + LE L
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG------IFKELKNLETL 90
Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
+ N+ LP + + + E+ + NQ+ P V +L L L + N+L
Sbjct: 91 WVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
Query: 370 PLAIGELKSIQILFLNENFLR 390
+L S++ L L N L+
Sbjct: 150 KGVFDKLTSLKELRLYNNQLK 170
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNL 281
G+ ++ +S + + L+ S+ T+L+ L + +N + F L +L +LNL
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 282 GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341
+N LG+ + + N KLEVLDL N + S L + E+A+ +NQ+
Sbjct: 331 SQNFLGSIDSR------MFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQL 383
Query: 342 SDTIPD-VIANLVNLNALGVESNQLAGTIP 370
++PD + L +L + + +N + P
Sbjct: 384 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537
+ D+S + + + T LE L + N + L + +L+LS+N L
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 538 IPQYLENLSFLLFLNMSYNHFEG 560
+ ENL L L++SYNH
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRA 361
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 25/114 (21%)
Query: 106 SNLMKFEASNNKLEGEIPVKI-SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGN 164
++L+K S N L G I ++ NL L++L+++ NH++ S L L+E+ + N
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 165 RLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVP 218
+L +P I ++SLQ I++HTN + S P
Sbjct: 382 QLKS-VPDGI----------------------FDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 98/273 (35%), Gaps = 59/273 (21%)
Query: 174 ISHVRN---LISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRY 230
I HV+N L S Y+ F+ M + +IS +I H P + +
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-------HMVCPPSPS----SFTF 357
Query: 231 FSISGNNLTGSLQDSLSNATNLQGLEINRNLFSG--KVSINFSRLQNLSRLNLGENNLGT 288
+ + N T S+ S LQ L + RN KV++ + +L L++ N+L +
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 289 -------GTTNDLDFITLLTN--------C--TKLEVLDLHSNRFGGVLPFSLANLSTTM 331
+ + L +N C K++VLDLH+NR
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-------------- 463
Query: 332 TEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRG 391
+IP + +L L L V SNQL L S+Q ++L++N
Sbjct: 464 ------------SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511
Query: 392 TIPSSXXXXXXXXXXXXEVNNLQGKIPPSNGNC 424
T P V N G + P + C
Sbjct: 512 TCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 544
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 42/136 (30%)
Query: 114 SNNKLEGEI----PVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGR 169
S+N L G + P K+ ++L++ N + +P + +L ALQE++V N+L
Sbjct: 436 SSNMLTGSVFRCLPPKV------KVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS- 487
Query: 170 IPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR 229
+P + F+ ++SLQYI++H N P D P +R
Sbjct: 488 VPDGV--------FD--------------RLTSLQYIWLHDN------PWD--CTCPGIR 517
Query: 230 YFSISGNNLTGSLQDS 245
Y S N +G +++S
Sbjct: 518 YLSEWINKHSGVVRNS 533
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 87 LTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQL 146
L L++N G + L + + NN++ IP +++L LQ LN+A N LK
Sbjct: 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVP 489
Query: 147 PASIGNLSALQEIDVRGNRLGGRIP 171
L++LQ I + N P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP 515
P V +L+ L L+++SN TSL+Y+ + DN + + P
Sbjct: 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
+ + +NL+ E +N++ P+K NL + L ++ N LK ++I L +++ +D+
Sbjct: 65 IQYLNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 120
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
++ P ++ + NL + NQ + I P+ +++LQY+ I N+ + PL N
Sbjct: 121 TSTQITDVTP--LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNNQVNDLTPLAN 177
Query: 222 GVNLPNLR 229
L LR
Sbjct: 178 LSKLTTLR 185
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 246 LSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305
L N T + LE++ N +I + LQ++ L+L T+ + +T L +
Sbjct: 87 LKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDL--------TSTQITDVTPLAGLSN 136
Query: 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365
L+VL L N+ + P LA L T + ++IG+NQ++D P +ANL L L + N++
Sbjct: 137 LQVLYLDLNQITNISP--LAGL-TNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKI 191
Query: 366 AGTIPLA 372
+ PLA
Sbjct: 192 SDISPLA 198
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 26/212 (12%)
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
+ N + + + L +FN G I +++L + + N+ PL N
Sbjct: 34 KSNVTDAVTQADLDGIATLSAFNTGVTTIEG----IQYLNNLIGLELKDNQITDLTPLKN 89
Query: 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI-NFSRLQNLSRLN 280
L + +SGN L N + + GL+ + L I + + L LS L
Sbjct: 90 ---LTKITELELSGN--------PLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 138
Query: 281 LGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQ 340
+ +L N + I+ L T L+ L + +N+ + P LANLS +T + N+
Sbjct: 139 VLYLDL-----NQITNISPLAGLTNLQYLSIGNNQVNDLTP--LANLSK-LTTLRADDNK 190
Query: 341 ISDTIPDVIANLVNLNALGVESNQLAGTIPLA 372
ISD P +A+L NL + ++ NQ++ PLA
Sbjct: 191 ISDISP--LASLPNLIEVHLKDNQISDVSPLA 220
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 89 LTNNYFLGKILTD--LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQL 146
L N+ LG+I +D +L+K E N+L G P +Q L + EN +K
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 147 PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQF 190
L L+ +++ N++ +P + H+ +L S N+A N F
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 26/101 (25%)
Query: 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLE----------------YLGMQ-------- 506
G L +LV L++ N +G P G + ++ +LG+
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 507 DNSFTISIPSTLSSLKSITELDLSRN--NLSGHIPQYLENL 545
DN + +P + L S+T L+L+ N N + H+ + E L
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
L+L N+ G+ P + ++ + E+ +G N+I + + L L L + NQ++
Sbjct: 59 LELKRNQLTGIEPNAFEG-ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 369 IPLAIGELKSIQILFLNEN 387
+P + L S+ L L N
Sbjct: 118 MPGSFEHLNSLTSLNLASN 136
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
LP+L + N LTG ++ A+++Q L++ N + F L L LNL +N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316
+ + + LT+ L+L SN F
Sbjct: 113 QISCVMPGSFEHLNSLTS------LNLASNPF 138
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 37/204 (18%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE- 283
LP+L + N LT + + L+ L + N S F+R+ +L RL+LGE
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 284 -------------------NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSL 324
NLG D+ +T L +LE L+L NR + P S
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL---VRLEELELSGNRLDLIRPGSF 198
Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
L T++ ++ + Q++ + +L +L L + N L L ++ + L
Sbjct: 199 QGL-TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Query: 385 NEN-------------FLRGTIPS 395
N N +L+ T+PS
Sbjct: 258 NHNPWHCNCDVLWLSWWLKETVPS 281
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
P + S+ I T R VP VN RY ++ N++ D+ + +L+
Sbjct: 6 CPAACSCSNQASRVICTRRELAEVPASIPVNT---RYLNLQENSIQVIRTDTFKHLRHLE 62
Query: 254 GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHS 313
L++++NL F+ L +L+ L L +N L T T +++ +KL L L +
Sbjct: 63 ILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYL------SKLRELWLRN 116
Query: 314 NRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPD-VIANLVNLNALGV 360
N + ++ N ++ + +G + + I + LVNL L +
Sbjct: 117 NPIESIPSYAF-NRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRN 532
L L L++S N P + G TSL L + + LKS+ EL+LS N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 533 NL 534
NL
Sbjct: 237 NL 238
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 40/217 (18%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGEN 284
LPN+RY ++ GN L +L TNL L + N + F +L NL L L EN
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 285 NLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344
L + LP + + T +T + + NQ+
Sbjct: 120 QLQS-------------------------------LPDGVFDKLTNLTYLYLYHNQLQSL 148
Query: 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSXXXXXXXX 404
V L NL L +++NQL +L ++ L LN+N L+ ++P
Sbjct: 149 PKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSL 207
Query: 405 XXXXEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIV 441
+NN P + C +++ L+ ++ G+V
Sbjct: 208 THIWLLNN------PWDCACSDILYLSRWISQHPGLV 238
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 11/151 (7%)
Query: 197 IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
I + +++Y+ + N+ H L L NL Y ++GN L TNL+ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKE---LTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 257 INRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316
+ N F +L NL+ L L N L + D +T LT LDL +N+
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTR------LDLDNNQL 169
Query: 317 GGVLPFSLANLSTTMTEIAIGSNQISDTIPD 347
LP + + T + ++++ NQ+ ++PD
Sbjct: 170 QS-LPEGVFDKLTQLKQLSLNDNQLK-SVPD 198
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 102/238 (42%), Gaps = 35/238 (14%)
Query: 77 EVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIP-VKISNLLMLQIL 135
++ NL LQ L L+ N LG C L + + L + P NL +L++L
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRL-GGRIPSTISHVRNLISFNVAYNQFSGMI 194
N++ L + L L+ ++++GN G I T NL+ Q G +
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT-----NLL-------QMVGSL 477
Query: 195 PPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQG 254
I +SS + I FHG L N+ + +S N+LTG D+LS +L+G
Sbjct: 478 E-ILILSSCNLLSIDQQAFHG---------LRNVNHLDLSHNSLTGDSMDALS---HLKG 524
Query: 255 LEINRNLFSGKVSIN----FSRLQNLSRLNLGENNLGTGTTNDLDFITLLT-NCTKLE 307
L + N+ S + I L S +NL N L T +++ FIT N KLE
Sbjct: 525 LYL--NMASNNIRIIPPHLLPALSQQSIINLSHNPLDC-TCSNIHFITWYKENLHKLE 579
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 31/119 (26%)
Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF-------TISIPS-------------- 516
LD+++ +G +P+ + G SL+ L + NSF S PS
Sbjct: 281 ELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLD 339
Query: 517 ----TLSSLKSITELDLSRNNL--SGHIPQYLENLSFLLFLNMSYNH---FEGKVPIEC 566
L L+++ +LDLS +++ S L+NL L +LN+SYN E + EC
Sbjct: 340 LGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKEC 398
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 37/204 (18%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE- 283
LP+L + N LT + + L+ L + N S F+R+ +L RL+LGE
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 284 -------------------NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSL 324
NLG D+ +T L +LE L+L NR + P S
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL---VRLEELELSGNRLDLIRPGSF 198
Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
L T++ ++ + Q++ + +L +L L + N L L ++ + L
Sbjct: 199 QGL-TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Query: 385 NEN-------------FLRGTIPS 395
N N +L+ T+PS
Sbjct: 258 NHNPWHCNCDVLWLSWWLKETVPS 281
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
P + S+ I T R VP VN RY ++ N++ D+ + +L+
Sbjct: 6 CPAACSCSNQASRVICTRRELAEVPASIPVNT---RYLNLQENSIQVIRTDTFKHLRHLE 62
Query: 254 GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLL 300
L++++NL F+ L +L+ L L +N L T T ++++ L
Sbjct: 63 ILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKL 109
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRN 532
L L L++S N P + G TSL L + + LKS+ EL+LS N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 533 NL 534
NL
Sbjct: 237 NL 238
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 246 LSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305
L N T + LE++ N +I + LQ++ L+L T+ + +T L +
Sbjct: 81 LKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDL--------TSTQITDVTPLAGLSN 130
Query: 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365
L+VL L N+ + P LA L T + ++IG+ Q+SD P +ANL L L + N++
Sbjct: 131 LQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185
Query: 366 AGTIPLA 372
+ PLA
Sbjct: 186 SDISPLA 192
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161
+ + +NL+ E +N++ P+K NL + L ++ N LK ++I L +++ +D+
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114
Query: 162 RGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221
++ P ++ + NL + NQ + I P+ +++LQY+ I + PL N
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLTPLAN 171
Query: 222 GVNLPNLR 229
L L+
Sbjct: 172 LSKLTTLK 179
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 21/153 (13%)
Query: 244 DSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNC 303
D L +A +L L+I +S N + L+RL L N+L + + N
Sbjct: 223 DQLWHALDLSNLQI------FNISANIFKYDFLTRLYLNGNSLT-------ELPAEIKNL 269
Query: 304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN 363
+ L VLDL NR LP L + + N ++ T+P NL NL LGVE N
Sbjct: 270 SNLRVLDLSHNRLTS-LPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326
Query: 364 QLAGTIPLAIGELKSIQ--ILFLNENFLRGTIP 394
L L I KS+ I +L +N R IP
Sbjct: 327 PLEKQF-LKILTEKSVTGLIFYLRDN--RPEIP 356
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511
P ++ NL NL LD+S N + +P LG C L+Y DN T
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 79 GNLFRLQNLT--LTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILN 136
N+F+ LT N L ++ ++ + SNL + S+N+L +P ++ + L+
Sbjct: 241 ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFY 299
Query: 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+N + LP GNL LQ + V GN L +
Sbjct: 300 FFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 132 LQILNIAENHLK--------------GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHV 177
LQI NI+ N K +LPA I NLS L+ +D+ NRL +P+ +
Sbjct: 234 LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSC 292
Query: 178 RNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTN 211
L F N + + N+ +LQ++ + N
Sbjct: 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 46/225 (20%)
Query: 106 SNLMKFEASNNKLEGEIP---VKISNLLMLQILNIAEN-HLKGQLPASIGNLSALQEIDV 161
S+L K + S+N L+ P I L L + N N HL +L + N +++Q + +
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSL 229
Query: 162 RGNRLGGRIPSTISHVR--NLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPL 219
N+L ST S ++ NL +++YN ++++ + + +
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNN-------LHDVGNGSFSY------------ 270
Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI---------NF 270
LP+LRY S+ NN+ S +NL+ L + R VS+ +F
Sbjct: 271 -----LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSF 325
Query: 271 SRLQNLSRLNLGENNLGTGTTN------DLDFITLLTNCTKLEVL 309
L+ L LN+ +NN+ + +N L +++L T L+ L
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTL 370
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 498 TSLEYLGMQDNSFTISIPSTLSSLK--SITELDLSRNNLSGHIPQYLENLSFLLFLNMSY 555
TS++ L + +N + ST S LK ++T+LDLS NNL L L +L++ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 556 NHFEGKVP 563
N+ + P
Sbjct: 282 NNIQRLSP 289
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 54/207 (26%)
Query: 36 VTGLDLRHQSVGGVLSPFV-----------------GNLNFLRSINLPNNSFR--GKIPH 76
V+G + H +SPF+ G+L L ++ L N + KI
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368
Query: 77 EVGNLFRLQNLTLTNNYF-LGKILTDLSHCSNLMKFEASNNKLEGEI----PVKISNLLM 131
+ LQ L ++ N + D S +L+ S+N L I P +I
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI----- 423
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
++L++ N +K +P + L ALQE++V N+L +P I F+
Sbjct: 424 -KVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGI--------FD------- 465
Query: 192 GMIPPIYNISSLQYIFIHTNRFHGSVP 218
++SLQ I++HTN + S P
Sbjct: 466 -------RLTSLQKIWLHTNPWDCSCP 485
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT--ISIPSTLSSLKSI 524
P+K+ + LD S+N+ + + G T LE L +Q N I + +KS+
Sbjct: 320 PSKISPF---LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 525 TELDLSRNNLS 535
+LD+S+N++S
Sbjct: 377 QQLDISQNSVS 387
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 29/190 (15%)
Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
N++ F++SG + L S + L+ + NL + V N L L L L N L
Sbjct: 303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 287 GTGTTNDLDFITLLTNCTK-LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345
+L I +T K L+ LD+ N + + ++ + + SN ++DTI
Sbjct: 361 -----KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415
Query: 346 ---------------------PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
P + L L L V SNQL L S+Q ++L
Sbjct: 416 FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
Query: 385 NENFLRGTIP 394
+ N + P
Sbjct: 476 HTNPWDCSCP 485
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE 139
+L L L LT N L S S+L K A L I +L L+ LN+A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 171 PSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 196 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE 139
+L L L LT N L S S+L K A L I +L L+ LN+A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 171 PSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 195 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537
SLD+S+N + + L C +L+ L + N + SSL S+ LDLS N LS
Sbjct: 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115
Query: 538 IPQYLENLSFLLFLNMSYNHFE 559
+ + LS L FLN+ N ++
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYK 137
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
NL+ ++ N + +DS S+ +L+ L+++ N S S F L +L+ LNL N
Sbjct: 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Query: 287 GTGTTNDLDFITLLTNCTKLEVLDL-HSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345
T L +L ++ TKL++L + + + F + A L T + E+ I ++ +
Sbjct: 137 KT-----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYE 190
Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
P + ++ N++ L + Q + + + S++ L L + L
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537
SLD+S+N + + L C +L+ L + N + SSL S+ LDLS N LS
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
Query: 538 IPQYLENLSFLLFLNMSYNHFE 559
+ + LS L FLN+ N ++
Sbjct: 90 SSSWFKPLSSLTFLNLLGNPYK 111
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNL 286
NL+ ++ N + +DS S+ +L+ L+++ N S S F L +L+ LNL N
Sbjct: 51 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
Query: 287 GTGTTNDLDFITLLTNCTKLEVLDL-HSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345
T L +L ++ TKL++L + + + F + A L T + E+ I ++ +
Sbjct: 111 KT-----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYE 164
Query: 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
P + ++ N++ L + Q + + + S++ L L + L
Sbjct: 165 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 208
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 24/185 (12%)
Query: 122 IPVKIS-NLLMLQILNIAENHLKGQL---PASIGNLSALQEIDVRGNRLGG--RIPSTIS 175
+P +S +L L+ L+++EN + + A +LQ + +R N L + T+
Sbjct: 325 VPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLL 384
Query: 176 HVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH---GSVP-----LD------- 220
++NL + +++ N F M ++Y+ + + R H G +P LD
Sbjct: 385 TLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLN 444
Query: 221 -NGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRL 279
+NLP L+ IS N L +L D+ S L L+I+RN F RL +L ++
Sbjct: 445 LFSLNLPQLKELYISRNKLM-TLPDA-SLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKI 502
Query: 280 NLGEN 284
L N
Sbjct: 503 WLHTN 507
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE 139
+L L L LT N L S S+L K A L I +L L+ LN+A
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 171 PSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 195 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE 139
+L L L LT N L S S+L K A L I +L L+ LN+A
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 171 PSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 194 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 270 FSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
F L L+ LNL N L T G +DL T+L L L +N+ LP + +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDL---------TELGTLGLANNQLAS-LPLGVFD 104
Query: 327 LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386
T + ++ +G NQ+ V L L L + +NQL A +L ++Q L L+
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 387 NFLRGTIP 394
N L+ ++P
Sbjct: 165 NQLQ-SVP 171
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 8/161 (4%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHG 215
+++D++ L +T + L N+ YNQ + +++ ++ L + + N+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96
Query: 216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN 275
S+PL +L L + GN L T L+ L +N N + F +L N
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 276 LSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316
L L+L N L + D + KL+ + L N+F
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRL------GKLQTITLFGNQF 191
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 25 TGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRS-----INLPNNSFRGKIPHEVG 79
TG TC ++ V D + +S+ V S + L L + +FRG
Sbjct: 8 TGCTCNEGKKEV---DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64
Query: 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI-SNLLMLQILNIA 138
NL Q TL+ F DL+ L +NN+L +P+ + +L L L +
Sbjct: 65 NLDYNQLQTLSAGVF-----DDLTE---LGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 139 ENHLKGQLPASI-GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPI 197
N LK LP+ + L+ L+E+ + N+L + NL + +++ NQ +
Sbjct: 116 GNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 198 YN-ISSLQYIFIHTNRFHGS 216
++ + LQ I + N+F S
Sbjct: 175 FDRLGKLQTITLFGNQFDCS 194
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 7/135 (5%)
Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
T L L ++ N + F L L L L N L + D +T +L+ L
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------QLDKL 112
Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
L N+ LP + + T + E+ + +NQ+ L NL L + +NQL
Sbjct: 113 YLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Query: 370 PLAIGELKSIQILFL 384
A L +Q + L
Sbjct: 172 HGAFDRLGKLQTITL 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 270 FSRLQNLSRLNLGENNLGT---GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN 326
F L L+ LNL N L T G +DL T+L L L +N+ LP + +
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDL---------TELGTLGLANNQLAS-LPLGVFD 104
Query: 327 LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386
T + ++ +G NQ+ V L L L + +NQL A +L ++Q L L+
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 387 NFLRGTIP 394
N L+ ++P
Sbjct: 165 NQLQ-SVP 171
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 157 QEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHG 215
+++D++ L +T + L N+ YNQ + +++ ++ L + + N+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96
Query: 216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN 275
S+PL +L L + GN L T L+ L +N N + F +L N
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156
Query: 276 LSRLNLGENNLGT------GTTNDLDFITLLTN---CTKLEVLDL 311
L L+L N L + L ITL N C++ E+L L
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL 201
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 25 TGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRS-----INLPNNSFRGKIPHEVG 79
TG TC ++ V D + +S+ V S + L L + +FRG
Sbjct: 8 TGCTCNEGKKEV---DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64
Query: 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI-SNLLMLQILNIA 138
NL Q TL+ F DL+ L +NN+L +P+ + +L L L +
Sbjct: 65 NLDYNQLQTLSAGVF-----DDLTE---LGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 139 ENHLKGQLPASI-GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPI 197
N LK LP+ + L+ L+E+ + N+L + NL + +++ NQ +
Sbjct: 116 GNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 198 YN-ISSLQYIFIHTNRFHGS 216
++ + LQ I + N+F S
Sbjct: 175 FDRLGKLQTITLFGNQFDCS 194
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 7/135 (5%)
Query: 250 TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
T L L ++ N + F L L L L N L + D +T +L+ L
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------QLDKL 112
Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI 369
L N+ LP + + T + E+ + +NQ+ L NL L + +NQL
Sbjct: 113 YLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Query: 370 PLAIGELKSIQILFL 384
A L +Q + L
Sbjct: 172 HGAFDRLGKLQTITL 186
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 31/169 (18%)
Query: 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAE 139
+L L L LT N L S S+L K A L I +L L+ LN+A
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 140 NHLKG-QLPASIGNLSALQEIDVRGNRLGG------RI---------------------- 170
N ++ +LP NL+ L+ +D+ N++ R+
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 171 PSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
P +R L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 196 PGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 12/191 (6%)
Query: 195 PPIYNISSL-QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQ 253
PP S+ + + H RF V + G+ R + N + QD ++ +L+
Sbjct: 4 PPRCECSAQDRAVLCHRKRF---VAVPEGIPTET-RLLDLGKNRIKTLNQDEFASFPHLE 59
Query: 254 GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHS 313
LE+N N+ S F+ L NL L L N L L T L+N TK LD+
Sbjct: 60 ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP---LGVFTGLSNLTK---LDISE 113
Query: 314 NRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
N+ +L + +L + + +G N + + L +L L +E L A+
Sbjct: 114 NKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 374 GELKSIQILFL 384
L + +L L
Sbjct: 173 SHLHGLIVLRL 183
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Query: 60 LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
LR +N+ N+ R + L+RL+ L +++ +L + + + NL ++ L
Sbjct: 183 LRHLNI--NAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237
Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
+ + +L+ L+ LN++ N + + + L LQEI + G +L P +
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297
Query: 180 LISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTN 211
L NV+ NQ + + +++ + +L+ + + +N
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 33/308 (10%)
Query: 60 LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119
L + L N P NLF L+ L L +N L + SNL K + S NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 120 GEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179
+ +L L+ L + +N L + L++L+++ + L +SH+
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 180 LISFNVAYNQFSGMIPPIYNISSLQ-YIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238
LI + + NI++++ Y F R L+ IS
Sbjct: 178 LIVLRLRH----------LNINAIRDYSFKRLYR---------------LKVLEISHWPY 212
Query: 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFIT 298
++ + NL L I + + L L LNL N + T +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG------S 266
Query: 299 LLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNAL 358
+L +L+ + L + V P++ L+ + + + NQ++ V ++ NL L
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQLTTLEESVFHSVGNLETL 325
Query: 359 GVESNQLA 366
++SN LA
Sbjct: 326 ILDSNPLA 333
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 503 LGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKV 562
L + N FT+ +P LS+ K +T +DLS N +S Q N++ LL L +SYN
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 563 P 563
P
Sbjct: 95 P 95
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 133 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 187
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351
N + IT+L+ TKL+ L L N+ ++P LA L T + + + N ISD +A
Sbjct: 141 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 195
Query: 352 LVNLNALGVESNQ 364
L NL+ L + S +
Sbjct: 196 LKNLDVLELFSQE 208
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 131 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAC--LTKLQNLYLSKNHI 185
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 26/154 (16%)
Query: 197 IYNISSLQYI------FIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250
I ++ +QY+ F++ N+ PL NL NL + + N +
Sbjct: 53 IKSVQGIQYLPNVTKLFLNGNKLTDIKPL---ANLKNLGWLFLDENKVKDLSSLKDLKKL 109
Query: 251 NLQGLEINRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
LE N G IN L L L LG N + IT+L+ TKL+ L
Sbjct: 110 KSLSLEHN-----GISDINGLVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTL 156
Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
L N+ ++P + T + + + N ISD
Sbjct: 157 SLEDNQISDIVPLACL---TKLQNLYLSKNHISD 187
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 21/206 (10%)
Query: 201 SSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRN 260
+S Q IF+H NR VP + + NL + N L G + + T L+ L+++ N
Sbjct: 31 ASSQRIFLHGNRI-SYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
Query: 261 LFSGKVS-INFSRLQNLSRLNL---GENNLGTGTTNDLDFITLL---------------T 301
V F L +L L+L G LG G L + L
Sbjct: 90 AQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 302 NCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVE 361
+ L L LH NR V + L + + + + N ++ P +L L L +
Sbjct: 150 DLGNLTHLFLHGNRIPSVPEHAFRGLHS-LDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Query: 362 SNQLAGTIPLAIGELKSIQILFLNEN 387
+N L+ + L+S+Q L LN+N
Sbjct: 209 ANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Query: 423 NCQNLILLTTRKNKLSGIVPRQLLRIITXXXXXXXXXXXXXGHFPTKVGNLKNLVSLDIS 482
+C+NL +L N L+GI + PT L +L +L +
Sbjct: 53 SCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD 112
Query: 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY 541
P G +L+YL +QDN+ +T L ++T L L N + +P++
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS-VPEH 170
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 136 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 190
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTM 331
L L L LG N + IT+L+ TKL+ L L N+ ++P LA L T +
Sbjct: 132 HLPQLESLYLGNNKITD--------ITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKL 180
Query: 332 TEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
+ + N ISD +A L NL+ L + S +
Sbjct: 181 QNLYLSKNHISDL--RALAGLKNLDVLELFSQE 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 136 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 190
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 197 IYNISSLQYI------FIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250
I ++ +QY+ F++ N+ PL NL NL + + N +
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPL---ANLKNLGWLFLDENKVKDLSSLKDLKKL 114
Query: 251 NLQGLEINRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
LE N G IN L L L LG N + IT+L+ TKL+ L
Sbjct: 115 KSLSLEHN-----GISDINGLVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTL 161
Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
L N+ ++P LA L T + + + N ISD +A L NL+ L + S +
Sbjct: 162 SLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 211
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ+ +PLA L +Q L+L++N +
Sbjct: 134 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVPLA--RLTKLQNLYLSKNHI 188
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISD 343
N + IT+L+ TKL+ L L N+ ++P LA L T + + + N ISD
Sbjct: 142 NKITDITVLSRLTKLDTLSLEDNQIRRIVP--LARL-TKLQNLYLSKNHISD 190
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 134 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 188
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 197 IYNISSLQYI------FIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250
I ++ +QY+ F++ N+ PL NL NL + + N +
Sbjct: 56 IKSVQGIQYLPNVTKLFLNGNKLTDIKPL---ANLKNLGWLFLDENKVKDLSSLKDLKKL 112
Query: 251 NLQGLEINRNLFSGKVSIN-FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309
LE N G IN L L L LG N + IT+L+ TKL+ L
Sbjct: 113 KSLSLEHN-----GISDINGLVHLPQLESLYLGNNKITD--------ITVLSRLTKLDTL 159
Query: 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ 364
L N+ ++P LA L T + + + N ISD +A L NL+ L + S +
Sbjct: 160 SLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 209
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 106 SNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR 165
S+ + E +NKL+ L L L++++N ++ L+ L + + N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 166 LGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
L + L + NQ + I++ ++SLQ I++HTN + S P
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Query: 254 GLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHS 313
G EI N G S+ + +RL L N L + D +T LT L L
Sbjct: 9 GTEIRCN-SKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK------LSLSQ 61
Query: 314 NRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373
N+ LP + + T +T + + N++ V L L L +++NQL
Sbjct: 62 NQIQS-LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF 120
Query: 374 GELKSIQILFLNENFLRGTIP 394
L S+Q ++L+ N + P
Sbjct: 121 DRLTSLQKIWLHTNPWDCSCP 141
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 154 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 208
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351
N + IT+L+ TKL+ L L N+ ++P LA L T + + + N ISD +A
Sbjct: 162 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 216
Query: 352 LVNLNALGVESNQ 364
L NL+ L + S +
Sbjct: 217 LKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 154 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 208
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351
N + IT+L+ TKL+ L L N+ ++P LA L T + + + N ISD +A
Sbjct: 162 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 216
Query: 352 LVNLNALGVESNQ 364
L NL+ L + S +
Sbjct: 217 LKNLDVLELFSQE 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 154 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 208
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 292 NDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351
N + IT+L+ TKL+ L L N+ ++P LA L T + + + N ISD +A
Sbjct: 162 NKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAG 216
Query: 352 LVNLNALGVESNQ 364
L NL+ L + S +
Sbjct: 217 LKNLDVLELFSQE 229
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFL 389
+ + +G+N+I+D V++ L L+ L +E NQ++ +PLA L +Q L+L++N +
Sbjct: 131 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHI 185
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 297 ITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLN 356
IT+L+ TKL+ L L N+ ++P LA L T + + + N ISD +A L NL+
Sbjct: 144 ITVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHISDL--RALAGLKNLD 198
Query: 357 ALGVESNQ 364
L + S +
Sbjct: 199 VLELFSQE 206
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384
A + T + + +NQI+ P V +LVNL L SN+L +L + L L
Sbjct: 29 AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88
Query: 385 NENFLRGTIP 394
N+N L+ +IP
Sbjct: 89 NDNHLK-SIP 97
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 130 LMLQILNIAENHLKG---QLPASI-GNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNV 185
L+ + N++ L+ ++P+ + +L L+ I+ N+L + L N+
Sbjct: 142 LLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNL 201
Query: 186 AYNQFSGMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
A NQ + I++ ++SLQ I++HTN + S P
Sbjct: 202 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 8/126 (6%)
Query: 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS 328
+ RL L R L N LLT+ L L+L +N +P L +
Sbjct: 118 HLDRLHGLKRFRFTTRRLTHIPAN------LLTDMRNLSHLELRAN--IEEMPSHLFDDL 169
Query: 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF 388
+ I GSN++ + + L L + SNQL L S+Q ++L+ N
Sbjct: 170 ENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNP 229
Query: 389 LRGTIP 394
+ P
Sbjct: 230 WDCSCP 235
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 108/277 (38%), Gaps = 52/277 (18%)
Query: 35 RVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY- 93
++ LDL + G+ S G LN L+ + L N F N L +L + N
Sbjct: 276 QLQELDLTATHLKGLPSGMKG-LNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVK 334
Query: 94 --FLGKILTDLSHCSNLMKFEASNNKLEGE--IPVKISNLLMLQILNIAENHLKGQLPAS 149
LG + L NL + S+N +E +++ NL LQ LN++ N G +
Sbjct: 335 KLHLG--VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Query: 150 IGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQ----- 204
L+ +D+ RL P + P N+ LQ
Sbjct: 393 FKECPQLELLDLAFTRLHINAPQS----------------------PFQNLHFLQVLNLT 430
Query: 205 YIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNL----QGLEINRN 260
Y F+ T+ H L G LP LR+ ++ GN+ QD TNL LE+
Sbjct: 431 YCFLDTSNQH----LLAG--LPVLRHLNLKGNH----FQDGTITKTNLLQTVGSLEVLIL 480
Query: 261 LFSGKVSIN---FSRLQNLSRLNLGENNLGTGTTNDL 294
G +SI+ F L +S ++L N+L + + L
Sbjct: 481 SSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSL 517
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365
L+ L L SN+ G LP + + T +T + +G+NQ++ V LV+L L + N+L
Sbjct: 66 LKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 366 AGTIPLAIGELKSIQILFLNENFLRGTIP 394
+P I L + L L++N L+ +IP
Sbjct: 125 T-ELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368
+D S R V A + T + + NQI+ P V +L+NL L + SNQL G
Sbjct: 24 VDCRSKRHASVP----AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GA 78
Query: 369 IPLAIGE-LKSIQILFLNENFLRGTIPSS 396
+P+ + + L + +L L N L +PS+
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLT-VLPSA 106
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
L++L+++ N+L S+ L LQE+ + N+L +++ V L+ +A NQ
Sbjct: 459 LEVLDVSNNNLDS---FSLF-LPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLK 512
Query: 192 GMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
+ I++ ++SLQ I++HTN + S P
Sbjct: 513 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 540
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537
SLD+S N + L C +L+ L ++ + SL S+ LDLS N+LS
Sbjct: 56 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 115
Query: 538 IPQYLENLSFLLFLNMSYNHFE 559
+ LS L +LN+ N ++
Sbjct: 116 SSSWFGPLSSLKYLNLMGNPYQ 137
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTN---NYFLGKILTDLSHCSNLMKFEASNNK 117
++I+L N + + N LQ L L+ K L H SNL+ + N
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI---LTGNP 91
Query: 118 LEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL-GGRIPSTISH 176
++ P S L L+ L E L IG L L++++V N + ++P+ S+
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 177 VRNLISFNVAYN 188
+ NL+ +++YN
Sbjct: 152 LTNLVHVDLSYN 163
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 17/96 (17%)
Query: 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS--------I 524
L +L +L ++ N P + G TSLE L +++ + L+SL+S +
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENL--------VAVETKLASLESFPIGQLITL 130
Query: 525 TELDLSRNNL-SGHIPQYLENLSFLLFLNMSYNHFE 559
+L+++ N + S +P Y NL+ L+ +++SYN+ +
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI-SIPSTLSSLKSITELDLS 530
+L+ L+ LDIS + G TSL L M NSF ++ + ++ ++T LDLS
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYN 556
+ L + L L LNMS+N
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHN 507
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTN---NYFLGKILTDLSHCSNLMKFEASNNK 117
++I+L N + + N LQ L L+ K L H SNL+ + N
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI---LTGNP 86
Query: 118 LEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL-GGRIPSTISH 176
++ P S L L+ L E L IG L L++++V N + ++P+ S+
Sbjct: 87 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 177 VRNLISFNVAYN 188
+ NL+ +++YN
Sbjct: 147 LTNLVHVDLSYN 158
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 17/96 (17%)
Query: 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS--------I 524
L +L +L ++ N P + G TSLE L +++ + L+SL+S +
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENL--------VAVETKLASLESFPIGQLITL 125
Query: 525 TELDLSRNNL-SGHIPQYLENLSFLLFLNMSYNHFE 559
+L+++ N + S +P Y NL+ L+ +++SYN+ +
Sbjct: 126 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 472 NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI-SIPSTLSSLKSITELDLS 530
+L+ L+ LDIS + G TSL L M NSF ++ + ++ ++T LDLS
Sbjct: 417 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 476
Query: 531 RNNLSGHIPQYLENLSFLLFLNMSYN 556
+ L + L L LNMS+N
Sbjct: 477 KCQLEQISWGVFDTLHRLQLLNMSHN 502
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 323 SLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG 367
L N +TT + + +GSN+ D+I V A L NL A E L G
Sbjct: 889 KLENWATTKS-VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 932
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L+ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVAYNQFSGM 193
P ++ L ++A NQ + +
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 323 SLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG 367
L N +TT + + +GSN+ D+I V A L NL A E L G
Sbjct: 897 KLENWATTKS-VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 940
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L+ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVAYNQFSGM 193
P ++ L ++A NQ + +
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L+ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVAYNQFSGM 193
P ++ L ++A NQ + +
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTEL 163
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L+ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVAYNQFSGM 193
P ++ L ++A NQ + +
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTEL 163
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVP 218
+D+ NRL +P ++ +R L + N + + N+ LQ + + NR S
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAA 525
Query: 219 LDNGVNLPNLRYFSISGNNLTGS--LQDSLSN 248
+ V+ P L ++ GN+L +Q+ L+
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557
>pdb|2XZM|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 265
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 62 SINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG 120
S NL + KI E N+F LQN+T+ L + D + + L E K G
Sbjct: 191 SKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELYSHEKKGEKATG 249
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVP 218
+D+ NRL +P ++ +R L + N + + N+ LQ + + NR S
Sbjct: 468 LDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAA 525
Query: 219 LDNGVNLPNLRYFSISGNNLTGS--LQDSLSN 248
+ V+ P L ++ GN+L +Q+ L+
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI---------NF 270
D+ LP L YF + NN+ SL N++ L + R+ +S+ +F
Sbjct: 271 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 330
Query: 271 SRLQNLSRLNLGEN-------NLGTGTTNDLDFITLLTNCTKLEVL 309
L+ L LN+ +N N+ TG N L +++L + T L L
Sbjct: 331 QWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTL 375
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 132 LQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191
L++L+++ N+L S+ L LQE+ + N+L +++ V L+ ++ NQ
Sbjct: 433 LEVLDVSNNNLDS---FSLF-LPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLK 486
Query: 192 GMIPPIYN-ISSLQYIFIHTNRFHGSVP 218
+ I++ ++SLQ I++HTN + S P
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 478 SLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537
SLD+S N + L C +L+ L ++ + SL S+ LDLS N+LS
Sbjct: 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89
Query: 538 IPQYLENLSFLLFLNMSYNHFE 559
+ LS L +LN+ N ++
Sbjct: 90 SSSWFGPLSSLKYLNLMGNPYQ 111
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI---------NF 270
D+ LP L YF + NN+ SL N++ L + R+ +S+ +F
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325
Query: 271 SRLQNLSRLNLGEN-------NLGTGTTNDLDFITLLTNCTKLEVL 309
L+ L LN+ +N N+ TG N L +++L + T L L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTL 370
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 220 DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI---------NF 270
D+ LP L YF + NN+ SL N++ L + R+ +S+ +F
Sbjct: 276 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 335
Query: 271 SRLQNLSRLNLGEN-------NLGTGTTNDLDFITLLTNCTKLEVL 309
L+ L LN+ +N N+ TG N L +++L + T L L
Sbjct: 336 QWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTL 380
>pdb|3V2U|A Chain A, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|B Chain B, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 438
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 152 NLSALQEIDVRGNRLGGRIPSTI 174
N+ + ID RGNRLG R+P T+
Sbjct: 239 NIPEQELIDERGNRLGQRVPKTV 261
>pdb|3BTU|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|C Chain C, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|D Chain D, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|E Chain E, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|F Chain F, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
Length = 438
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 152 NLSALQEIDVRGNRLGGRIPSTI 174
N+ + ID RGNRLG R+P T+
Sbjct: 239 NIPEQELIDERGNRLGQRVPKTV 261
>pdb|3BTS|A Chain A, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTS|B Chain B, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTV|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
pdb|3BTV|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
Length = 438
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 152 NLSALQEIDVRGNRLGGRIPSTI 174
N+ + ID RGNRLG R+P T+
Sbjct: 239 NIPEQELIDERGNRLGQRVPKTV 261
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 25/152 (16%)
Query: 243 QDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTN 302
Q LS N G N +G NL L+L N + ++ L +
Sbjct: 37 QKELSGVQNFNGDNSNIQSLAG-----MQFFTNLKELHLSHNQISD--------LSPLKD 83
Query: 303 CTKLEVLDLHSNRFGGV--LPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGV 360
TKLE L ++ NR + +P S ++ + + +N++ DT D + +L NL L +
Sbjct: 84 LTKLEELSVNRNRLKNLNGIP------SACLSRLFLDNNELRDT--DSLIHLKNLEILSI 135
Query: 361 ESNQLAGTIPLAIGELKSIQILFLNENFLRGT 392
+N+L + +G L +++L L+ N + T
Sbjct: 136 RNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 18/236 (7%)
Query: 87 LTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQL 146
L L NN D +L NNK+ S L LQ L I++NHL ++
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 147 PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQF--SGMIPPIYNISSLQ 204
P ++ S+L E+ + NR+ S +RN+ + N SG P ++ L
Sbjct: 118 PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 205 YIFIHTNRFHGSVPLDNGVNLPN-LRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFS 263
Y+ I + G +P D LP L + N + + L + L L + N
Sbjct: 176 YLRISEAKLTG-IPKD----LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 264 GKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGV 319
+ + S L L L+L N L L + L+V+ LH+N V
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAG-------LPDLKLLQVVYLHTNNITKV 279
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 70 FRGKIPHEVGNLFRLQNLTLTNNYFLGKILT 100
F +IPH + + L +LT+T N FLGK +T
Sbjct: 422 FNARIPH-IPKIVELDHLTITGNVFLGKDVT 451
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 308 VLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG 367
+LDL +N+ + NL T I I +N+IS P A LV L L + NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 368 TIPLAIGELKSIQILFLNEN 387
+P + K++Q L ++EN
Sbjct: 114 ELPEKMP--KTLQELRVHEN 131
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 24/210 (11%)
Query: 87 LTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQL 146
L L NN D + NL NNK+ P + L+ L+ L +++N LK +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 147 PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYN----------QFSGMIPP 196
P + LQE+ V N + S + + +I + N F GM
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM--- 170
Query: 197 IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
L YI I ++P G+ P+L + GN +T SL NL L
Sbjct: 171 ----KKLSYIRIADTNI-TTIP--QGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 257 INRNLFSGKVSINFSRLQNLSRLNLGENNL 286
++ N S + + + +L L+L N L
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 308 VLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG 367
+LDL +N+ + NL T I I +N+IS P A LV L L + NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 368 TIPLAIGELKSIQILFLNEN 387
+P + K++Q L ++EN
Sbjct: 114 ELPEKMP--KTLQELRVHEN 131
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 24/210 (11%)
Query: 87 LTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQL 146
L L NN D + NL NNK+ P + L+ L+ L +++N LK +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 147 PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYN----------QFSGMIPP 196
P + LQE+ V N + S + + +I + N F GM
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM--- 170
Query: 197 IYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLE 256
L YI I ++P G+ P+L + GN +T SL NL L
Sbjct: 171 ----KKLSYIRIADTNI-TTIP--QGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 257 INRNLFSGKVSINFSRLQNLSRLNLGENNL 286
++ N S + + + +L L+L N L
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE- 283
L +L + N LT + + L+ L + N S F+R+ +L RL+LGE
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 284 -------------------NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSL 324
NLG D+ +T L LE L++ N F + P S
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG---LEELEMSGNHFPEIRPGSF 238
Query: 325 ANLSTTMTEIAIGSNQIS---DTIPDVIANLVNLN 356
LS ++ ++ + ++Q+S D +A+LV LN
Sbjct: 239 HGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELN 272
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 111 FEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170
+ S+N+L+ +P+ L L +L+++ N L ++ L LQE+ ++GN L
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 171 PSTISHVRNLISFNVAYNQFSGM 193
P ++ L ++A N + +
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTEL 163
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 46/208 (22%)
Query: 52 PFVGNLNFLRSINLPNNSFRGKIP-------------HEVGNLFRLQNLTLTNNYFLG-- 96
P + N +FL+ I++ NNS + K+P +++ L LQNL +
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205
Query: 97 --KILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLS 154
K L DL L A NN LE E+P ++ NL L + A+N+L LP +L
Sbjct: 206 SLKKLPDLPLS--LESIVAGNNILE-ELP-ELQNLPFLTTI-YADNNLLKTLPDLPPSLE 260
Query: 155 ALQEIDVRGNRLGG--RIPSTISHVRNLISFNVAYNQFSGM--IPPIYNISSLQYIFIHT 210
AL +VR N L +P +++ + +V+ N FSG+ +PP +L Y+ +
Sbjct: 261 AL---NVRDNYLTDLPELPQSLTFL------DVSENIFSGLSELPP-----NLYYLNASS 306
Query: 211 NRFHGSVPLDNGVNLPNLRYFSISGNNL 238
N L P+L ++S N L
Sbjct: 307 NEIRSLCDLP-----PSLEELNVSNNKL 329
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 326 NLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN 385
NL T+TEI + N I P + L + + +NQ++ P A L+S+ L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 386 EN 387
N
Sbjct: 89 GN 90
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 326 NLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN 385
NL T+TEI + N I P + L + + +NQ++ P A L+S+ L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 386 EN 387
N
Sbjct: 89 GN 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,152,887
Number of Sequences: 62578
Number of extensions: 593666
Number of successful extensions: 2049
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 558
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)