Query 046712
Match_columns 566
No_of_seqs 273 out of 3361
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 03:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.7E-64 1.9E-68 553.4 38.6 552 1-565 37-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.1E-54 2E-58 473.6 36.9 511 34-557 93-605 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.9E-38 1.1E-42 296.1 6.8 363 110-506 82-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-37 2.3E-42 293.9 6.7 368 34-411 78-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.7E-39 8.1E-44 290.6 -13.9 479 58-564 45-544 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.7E-38 3.7E-43 286.3 -16.5 499 34-556 45-561 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.5E-35 7.5E-40 291.4 -5.4 470 50-556 13-486 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.1E-34 2.5E-39 287.8 -9.7 464 62-560 2-466 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 6.5E-33 1.4E-37 263.8 -4.9 365 33-414 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 8.1E-32 1.8E-36 256.4 -4.2 321 55-437 4-328 (1255)
11 PLN03210 Resistant to P. syrin 99.9 9.1E-23 2E-27 226.5 24.0 381 7-412 508-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.9E-26 217.3 27.8 17 469-485 888-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 8.9E-26 1.9E-30 204.1 -4.6 286 25-316 49-358 (498)
14 KOG4237 Extracellular matrix p 99.9 2.7E-24 5.8E-29 194.6 -3.0 399 109-556 70-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4.8E-19 1.1E-23 182.7 16.2 264 227-542 202-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.9E-18 4.2E-23 178.3 16.4 262 203-517 203-464 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-19 4.9E-24 174.0 -0.7 90 469-558 216-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 3.5E-17 7.7E-22 170.2 12.4 246 251-535 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.7E-18 1E-22 164.7 4.0 266 248-533 21-318 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 7.6E-17 1.6E-21 167.7 11.1 292 226-563 178-474 (754)
21 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.6E-23 139.2 -5.4 167 349-545 29-195 (264)
22 KOG0617 Ras suppressor protein 99.6 1.1E-17 2.4E-22 134.4 -4.4 155 56-214 31-186 (264)
23 KOG3207 Beta-tubulin folding c 99.3 3.2E-13 6.9E-18 125.2 1.3 206 329-535 121-339 (505)
24 PLN03150 hypothetical protein; 99.3 6.1E-12 1.3E-16 130.9 10.8 137 2-141 381-526 (623)
25 KOG1909 Ran GTPase-activating 99.3 2.6E-13 5.7E-18 122.3 -1.3 139 375-534 155-310 (382)
26 KOG1909 Ran GTPase-activating 99.3 1E-12 2.2E-17 118.6 0.6 137 422-558 154-310 (382)
27 KOG0532 Leucine-rich repeat (L 99.2 2.7E-13 5.9E-18 129.6 -5.7 170 356-535 78-247 (722)
28 KOG1259 Nischarin, modulator o 99.2 6.8E-12 1.5E-16 110.7 1.9 208 345-562 206-415 (490)
29 COG4886 Leucine-rich repeat (L 99.1 1.5E-10 3.2E-15 115.5 6.7 196 333-538 97-293 (394)
30 KOG0532 Leucine-rich repeat (L 99.1 5.7E-12 1.2E-16 120.7 -3.7 170 307-511 78-247 (722)
31 KOG4658 Apoptotic ATPase [Sign 99.1 9.2E-11 2E-15 124.7 4.1 105 83-188 546-652 (889)
32 KOG3207 Beta-tubulin folding c 99.0 3.1E-11 6.7E-16 112.2 -0.1 137 176-317 144-284 (505)
33 KOG4658 Apoptotic ATPase [Sign 99.0 3.1E-10 6.6E-15 120.8 6.5 149 34-185 523-675 (889)
34 PF14580 LRR_9: Leucine-rich r 99.0 4.2E-10 9E-15 95.5 5.5 104 59-167 20-126 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.4E-15 96.4 4.1 126 78-208 15-147 (175)
36 PLN03150 hypothetical protein; 99.0 1.3E-09 2.9E-14 113.5 8.2 112 452-563 420-532 (623)
37 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.6E-14 109.0 7.0 197 86-291 97-294 (394)
38 KOG1259 Nischarin, modulator o 98.9 2.5E-10 5.5E-15 101.0 0.8 129 377-512 284-413 (490)
39 PF13855 LRR_8: Leucine rich r 98.9 8.6E-10 1.9E-14 76.8 3.3 59 499-557 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.8E-14 75.9 3.4 61 474-534 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 1.8E-09 3.9E-14 107.7 -0.1 202 349-563 114-322 (414)
42 KOG0531 Protein phosphatase 1, 98.6 2.8E-09 6E-14 106.3 -2.0 240 304-559 49-290 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.7E-09 3.6E-14 95.8 -3.5 158 227-389 186-350 (419)
44 KOG2120 SCF ubiquitin ligase, 98.6 9.5E-10 2.1E-14 97.3 -6.4 183 329-535 185-376 (419)
45 KOG1859 Leucine-rich repeat pr 98.6 1.2E-09 2.5E-14 108.1 -7.1 126 425-558 164-291 (1096)
46 KOG2982 Uncharacterized conser 98.4 6.3E-08 1.4E-12 86.0 0.2 228 83-310 46-285 (418)
47 KOG2982 Uncharacterized conser 98.4 6.2E-08 1.4E-12 86.0 -0.5 83 128-211 69-156 (418)
48 KOG4341 F-box protein containi 98.3 1.1E-08 2.5E-13 94.9 -6.2 235 199-437 188-438 (483)
49 KOG4341 F-box protein containi 98.3 2.1E-08 4.5E-13 93.3 -4.6 281 250-534 138-438 (483)
50 COG5238 RNA1 Ran GTPase-activa 98.3 1.1E-07 2.3E-12 83.5 -1.3 146 196-342 87-255 (388)
51 COG5238 RNA1 Ran GTPase-activa 98.3 3.7E-07 8E-12 80.2 1.8 137 423-559 155-316 (388)
52 KOG1859 Leucine-rich repeat pr 98.1 3E-08 6.5E-13 98.5 -8.0 180 51-238 102-291 (1096)
53 KOG1644 U2-associated snRNP A' 98.1 6.9E-06 1.5E-10 69.2 5.8 101 453-555 45-149 (233)
54 PRK15386 type III secretion pr 98.0 1.9E-05 4.1E-10 75.9 8.8 137 349-508 48-187 (426)
55 PRK15386 type III secretion pr 98.0 2.3E-05 5.1E-10 75.2 8.9 136 329-485 52-188 (426)
56 KOG3665 ZYG-1-like serine/thre 97.9 2.7E-06 5.9E-11 88.8 0.9 87 471-559 170-263 (699)
57 PF12799 LRR_4: Leucine Rich r 97.9 7.9E-06 1.7E-10 51.7 2.5 36 499-535 2-37 (44)
58 PF12799 LRR_4: Leucine Rich r 97.9 8.8E-06 1.9E-10 51.5 2.0 36 475-511 2-37 (44)
59 KOG4579 Leucine-rich repeat (L 97.9 7.4E-07 1.6E-11 69.9 -3.5 105 60-167 29-136 (177)
60 PF13306 LRR_5: Leucine rich r 97.8 5.7E-05 1.2E-09 61.9 7.0 126 50-181 4-129 (129)
61 KOG1644 U2-associated snRNP A' 97.8 3.6E-05 7.9E-10 65.0 5.1 59 131-191 43-101 (233)
62 KOG4579 Leucine-rich repeat (L 97.7 2E-06 4.2E-11 67.6 -2.8 58 475-534 78-135 (177)
63 KOG3665 ZYG-1-like serine/thre 97.7 6.9E-06 1.5E-10 85.8 0.3 136 199-336 146-282 (699)
64 PF13306 LRR_5: Leucine rich r 97.6 0.00028 6E-09 57.8 7.6 37 469-507 76-112 (129)
65 PF08263 LRRNT_2: Leucine rich 97.4 6.8E-05 1.5E-09 47.3 1.0 30 1-30 11-43 (43)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00037 8.1E-09 61.7 2.5 99 453-553 46-150 (260)
67 KOG2739 Leucine-rich acidic nu 97.0 0.0003 6.5E-09 62.3 1.7 111 420-533 38-154 (260)
68 KOG1947 Leucine rich repeat pr 96.9 0.00015 3.2E-09 74.8 -1.1 36 476-511 403-440 (482)
69 KOG1947 Leucine rich repeat pr 96.7 0.00012 2.6E-09 75.4 -4.0 221 328-558 187-439 (482)
70 KOG2123 Uncharacterized conser 96.6 0.00014 3E-09 64.7 -3.6 81 226-315 19-99 (388)
71 KOG2123 Uncharacterized conser 96.2 0.00024 5.2E-09 63.2 -4.4 84 224-310 39-123 (388)
72 KOG4308 LRR-containing protein 95.4 6E-05 1.3E-09 75.4 -12.9 64 472-535 230-303 (478)
73 KOG3864 Uncharacterized conser 95.1 0.002 4.4E-08 54.8 -2.7 80 453-532 104-186 (221)
74 PF00560 LRR_1: Leucine Rich R 95.1 0.0086 1.9E-07 31.3 0.6 6 503-508 5-10 (22)
75 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 31.0 0.7 21 523-544 1-21 (22)
76 KOG3864 Uncharacterized conser 93.7 0.0064 1.4E-07 51.9 -2.7 80 60-139 103-185 (221)
77 KOG4308 LRR-containing protein 93.3 0.00051 1.1E-08 68.9 -11.8 261 298-559 109-445 (478)
78 KOG0473 Leucine-rich repeat pr 92.5 0.0011 2.5E-08 57.4 -9.0 87 78-167 38-124 (326)
79 PF13504 LRR_7: Leucine rich r 92.1 0.092 2E-06 25.3 1.2 12 475-486 2-13 (17)
80 KOG0473 Leucine-rich repeat pr 91.7 0.0035 7.6E-08 54.5 -6.9 89 468-559 36-124 (326)
81 PF13516 LRR_6: Leucine Rich r 87.9 0.13 2.9E-06 27.3 -0.3 13 523-535 3-15 (24)
82 smart00369 LRR_TYP Leucine-ric 87.1 0.49 1.1E-05 25.7 1.7 14 522-535 2-15 (26)
83 smart00370 LRR Leucine-rich re 87.1 0.49 1.1E-05 25.7 1.7 14 522-535 2-15 (26)
84 smart00369 LRR_TYP Leucine-ric 85.7 0.69 1.5E-05 25.1 1.9 14 58-71 2-15 (26)
85 smart00370 LRR Leucine-rich re 85.7 0.69 1.5E-05 25.1 1.9 14 58-71 2-15 (26)
86 smart00368 LRR_RI Leucine rich 74.4 1.8 3.9E-05 24.0 1.0 13 547-559 3-15 (28)
87 smart00367 LRR_CC Leucine-rich 72.4 2.1 4.6E-05 23.2 1.0 11 522-532 2-12 (26)
88 smart00364 LRR_BAC Leucine-ric 68.7 3.7 8.1E-05 22.3 1.4 13 499-511 3-15 (26)
89 KOG4242 Predicted myosin-I-bin 68.6 20 0.00043 35.6 7.2 300 250-558 135-480 (553)
90 KOG4242 Predicted myosin-I-bin 67.0 39 0.00084 33.7 8.7 37 329-365 440-480 (553)
91 smart00365 LRR_SD22 Leucine-ri 66.2 5.5 0.00012 21.7 1.8 14 58-71 2-15 (26)
92 KOG3763 mRNA export factor TAP 51.3 8.4 0.00018 38.9 1.5 67 224-290 216-286 (585)
93 KOG3763 mRNA export factor TAP 44.4 11 0.00024 38.1 1.2 66 471-536 215-284 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.7e-64 Score=553.40 Aligned_cols=552 Identities=35% Similarity=0.582 Sum_probs=508.7
Q ss_pred CcccCCCCCCCCCCCcCCCCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCccc-C
Q 046712 1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEV-G 79 (566)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~-~ 79 (566)
|++++.||.+++++|+..++||.|.|+.|... .+|+.|+++++.+.+..+..|..+++|++|++++|.+.+.+|..+ .
T Consensus 37 ~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~ 115 (968)
T PLN00113 37 FKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT 115 (968)
T ss_pred HHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc
Confidence 56778899999999999999999999999865 799999999999999999999999999999999999987788765 4
Q ss_pred CCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEE
Q 046712 80 NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEI 159 (566)
Q Consensus 80 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 159 (566)
.+++|++|++++|.+++..+. ..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 999999999999998876654 468999999999999988899999999999999999999988999999999999999
Q ss_pred EccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712 160 DVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238 (566)
Q Consensus 160 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (566)
++++|.+.+..|..++.+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+.+|.... .+++|+.|++++|.+
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l 272 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKL 272 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCee
Confidence 999999998899999999999999999999887665 788999999999999999887777665 899999999999999
Q ss_pred cccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeee
Q 046712 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGG 318 (566)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 318 (566)
.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP------VALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC------hhHhcCCCCCEEECcCCCCcC
Confidence 88888889999999999999999988888888999999999999998876555 457789999999999999998
Q ss_pred ecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCcccc
Q 046712 319 VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLG 398 (566)
Q Consensus 319 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 398 (566)
..|..+... ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+.
T Consensus 347 ~~p~~l~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 347 EIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred cCChHHhCC-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence 888877665 8999999999999988999999999999999999999988999999999999999999999988999999
Q ss_pred CCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCE
Q 046712 399 NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVS 478 (566)
Q Consensus 399 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~ 478 (566)
.++.|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+. . ..++.|++++|++.+..+..+..+++|+.
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 503 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S-KRLENLDLSRNQFSGAVPRKLGSLSELMQ 503 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c-ccceEEECcCCccCCccChhhhhhhccCE
Confidence 999999999999999998888888999999999999999887776543 2 44599999999999999999999999999
Q ss_pred EeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcC
Q 046712 479 LDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558 (566)
Q Consensus 479 L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 558 (566)
|++++|.+.+.+|..+..+++|++|+|++|.+++.+|+.+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 046712 559 EGKVPIE 565 (566)
Q Consensus 559 ~~~~p~~ 565 (566)
+|.+|..
T Consensus 584 ~~~~p~~ 590 (968)
T PLN00113 584 HGSLPST 590 (968)
T ss_pred eeeCCCc
Confidence 9999963
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.1e-54 Score=473.59 Aligned_cols=511 Identities=30% Similarity=0.496 Sum_probs=464.2
Q ss_pred CcEEEEEcCCCccccccCccC-cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEE
Q 046712 34 QRVTGLDLRHQSVGGVLSPFV-GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFE 112 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~-~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 112 (566)
+.+++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.+|. ..+++|++|++++|.+.+..+..+.++++|++|+
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 789999999999987777654 5999999999999999877774 5689999999999999888899999999999999
Q ss_pred cCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccccee
Q 046712 113 ASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG 192 (566)
Q Consensus 113 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (566)
+++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 99999988899999999999999999999998999999999999999999999998999999999999999999999886
Q ss_pred cCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeeccccccccccccccc
Q 046712 193 MIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFS 271 (566)
Q Consensus 193 ~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 271 (566)
..+ .+..+++|+.|++++|.+.+.+|.... .+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+.
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 666 788999999999999999887777665 889999999999999888888899999999999999999888888899
Q ss_pred CCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhc
Q 046712 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIAN 351 (566)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 351 (566)
.+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..|..+... +.++.|++.+|.+.+..|..+..
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred cCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhC
Confidence 99999999999999876544 456788999999999999998888877664 78999999999999999999999
Q ss_pred cCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEE
Q 046712 352 LVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLT 431 (566)
Q Consensus 352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 431 (566)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|.+.+..|..+ ..++|+.|+
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD 481 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence 9999999999999998889999999999999999999998888888899999999999999988777655 468999999
Q ss_pred ccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712 432 TRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 432 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~ 511 (566)
+++|++.+..|..+..+..+ +.|++++|.+.+..|..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|.+.
T Consensus 482 ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSEL-MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred CcCCccCCccChhhhhhhcc-CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 99999999888888877666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCc
Q 046712 512 ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNH 557 (566)
Q Consensus 512 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 557 (566)
+.+|..+..+++|+.|++++|++.+.+|.. .....+....+.+|+
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 999999999999999999999999888864 333344455556664
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-38 Score=296.09 Aligned_cols=363 Identities=22% Similarity=0.221 Sum_probs=208.1
Q ss_pred EEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccc
Q 046712 110 KFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQ 189 (566)
Q Consensus 110 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~ 189 (566)
+|++++|++..+.+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.|...-.+.++.++.|++|+|+.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 4555555555555555555555555555555555 455555555556666666666655555556666666666666665
Q ss_pred ceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccc
Q 046712 190 FSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI 268 (566)
Q Consensus 190 ~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 268 (566)
++.+.. .+-.-.++++|++++|.++ .+....+..+.+|..|.++.|.++.....+|.++++|+.|++..|++......
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 554433 2222234444444444443 33333344556666667777766666666666667777777766666544445
Q ss_pred cccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchh
Q 046712 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV 348 (566)
Q Consensus 269 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 348 (566)
.|+++++|+.|.+..|.+..... +.|..+.++++|+++.|++. ..-..+
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~D------G~Fy~l~kme~l~L~~N~l~-------------------------~vn~g~ 288 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDD------GAFYGLEKMEHLNLETNRLQ-------------------------AVNEGW 288 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccC------cceeeecccceeecccchhh-------------------------hhhccc
Confidence 56666666666666666665544 44556666666666666554 333445
Q ss_pred hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCc
Q 046712 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI 428 (566)
Q Consensus 349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 428 (566)
+.++.+|+.|++++|.|..+-++++..+++|++|+++.|.+++..+..|..+..|++|+++.|.++..-...|..+.+|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 56666777777777776666666666777777777777777666666666677777777777776655555666667777
Q ss_pred EEEccCCcceeccchh--hhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCC
Q 046712 429 LLTTRKNKLSGIVPRQ--LLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ 506 (566)
Q Consensus 429 ~L~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~ 506 (566)
.|+++.|.+...+.+. .++-.+.++.|++.+|++....-.+|.+++.|++||+.+|.+..+-+.+|..+ .|++|.+.
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 7777776665432211 11111222333444444443444455555555555555555554555555544 55555443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=293.85 Aligned_cols=368 Identities=20% Similarity=0.240 Sum_probs=299.1
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
..++.|++++|.+...-+.+|.++++|+.+.+..|.++ .+|.......+|+.|+|.+|.|+......++.++.|++||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 56788999999999888888999999999999999887 78876666777999999999988888888888999999999
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
+.|.++.+.-..+.+-.++++|+|++|.|+..-...|..+.+|..|.++.|+++..-+..|+++++|+.|+|..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99988866556677778899999999999877778888888999999999999866666788899999999999988765
Q ss_pred CC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccC
Q 046712 194 IP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSR 272 (566)
Q Consensus 194 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 272 (566)
.. .+..+++|+.|.+..|.+. .+..+.++.+.++++|++..|+++..-..++-++.+|+.|+++.|.+..+-...+..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 33 7778888888888888876 666777778888999999988888777778888888999999988888877888888
Q ss_pred CCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCc---chhh
Q 046712 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI---PDVI 349 (566)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~ 349 (566)
+++|+.|++++|.++..+. ..+..+..|+.|++++|.+...-..++.. ..+|++|+|+.|.++..+ ...|
T Consensus 316 tqkL~~LdLs~N~i~~l~~------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDE------GSFRVLSQLEELNLSHNSIDHLAEGAFVG-LSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred cccceeEeccccccccCCh------hHHHHHHHhhhhcccccchHHHHhhHHHH-hhhhhhhcCcCCeEEEEEecchhhh
Confidence 8899999999888888777 55667788888888888877444444433 378888888888776433 3356
Q ss_pred hccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046712 350 ANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN 411 (566)
Q Consensus 350 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 411 (566)
..+++|++|++.+|++..+.-.+|.++++|+.|++.+|.+..+.+.+|..+ .|++|.++.-
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 678888888888888876666678888888888888888877777888877 7888877543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.7e-39 Score=290.55 Aligned_cols=479 Identities=26% Similarity=0.408 Sum_probs=308.9
Q ss_pred CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEec
Q 046712 58 NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNI 137 (566)
Q Consensus 58 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 137 (566)
..++.+.+++|.+. .+.+.+.++..|.+|++.+|++. ..|.+++.+..+..++.+.|++. .+|.++.....|+.++.
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 35666777777766 44445667777777777777765 45556667777777777777776 66777777777777777
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccC
Q 046712 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSV 217 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 217 (566)
+.|.+. ++++.++.+..++.++..+|.++ ..|+++..+.++..+++.+|.+....+....++.|++++...|.+. .+
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cC
Confidence 777766 66777777777777777777776 6677777777777777777777666665545677777776666665 56
Q ss_pred CCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhh
Q 046712 218 PLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFI 297 (566)
Q Consensus 218 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 297 (566)
|...+ .+.+|+-|++..|++. ..+ .|.+|..|+++++..|.+.-........++++..||+..|++.+.+.+
T Consensus 199 P~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde----- 270 (565)
T KOG0472|consen 199 PPELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE----- 270 (565)
T ss_pred Chhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-----
Confidence 66555 6666777777777665 333 466666677777766666544444455666666677776666665442
Q ss_pred hhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcch--------hhhccCC-CCeecccCCc---c
Q 046712 298 TLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPD--------VIANLVN-LNALGVESNQ---L 365 (566)
Q Consensus 298 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~l~~-L~~L~l~~~~---~ 365 (566)
+..+.+|+.||+++|.++ ..|..++.+ .|+.|.+.+|.+...--+ .+..+.+ .+.=.++... .
T Consensus 271 --~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 271 --ICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred --HHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 334456666666666666 444444443 566666666654311000 0110000 0000001000 0
Q ss_pred cc-c-ccc---cccCCCCCCEEEccCCcccccCCccccCCC---CCCeEeccCccccccCCCCCcCCCCCcE-EEccCCc
Q 046712 366 AG-T-IPL---AIGELKSIQILFLNENFLRGTIPSSLGNLT---LLTQLILEVNNLQGKIPPSNGNCQNLIL-LTTRKNK 436 (566)
Q Consensus 366 ~~-~-~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~---~L~~L~l~~~~l~~~~~~~~~~~~~L~~-L~l~~~~ 436 (566)
++ . .+. ......+.+.|++++-+++ .+|....... -...++++.|++. ++|..+..+..+.+ +.++.|.
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence 00 0 000 1123456777888877777 4443322222 3677788888877 66666665555544 3344444
Q ss_pred ceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCc
Q 046712 437 LSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS 516 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 516 (566)
+ +.+|..+..++.+ ..|++++|.+. ..|..++.+..|+.|||+.|++. ..|..+.....++.+-.++|++....++
T Consensus 424 i-sfv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 424 I-SFVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred c-ccchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence 3 3445555555544 88888888877 56666777888999999999887 7888777777788888888888866677
Q ss_pred CCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712 517 TLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564 (566)
Q Consensus 517 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 564 (566)
++.++.+|.+||+.+|.++ .+|..+.++++|++|+++||++. .|+
T Consensus 500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence 7999999999999999998 78888999999999999999987 564
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.7e-38 Score=286.33 Aligned_cols=499 Identities=22% Similarity=0.315 Sum_probs=394.3
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
...+.+.+++|.+... .+.+.++.-+.+|++.+|++. ..|.+++.+..++.++.++|++. ..|..+..+++|+.++.
T Consensus 45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 5678899999998854 456889999999999999998 78889999999999999999976 67888999999999999
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++|.+. .++..++.+-.|..++..+|.+. .+|..+.++.++..+++.+|.+. ..|+..-+++.|+.++...|.+.+.
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETL 198 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcC
Confidence 999988 77888999999999999999998 79999999999999999999998 5666655699999999999999999
Q ss_pred CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
++.++.+.+|..|++..|++. .+|+ +. ++..|++++++.|++.-.......+++++..|++.+|++.+ +|..+.-+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lPe-f~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clL 274 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLPE-FP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLL 274 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCCC-CC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHh
Confidence 999999999999999999887 5663 22 78999999999999886666667789999999999999974 55567778
Q ss_pred CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh-ccCCcEEE-------ccCCCCCC--
Q 046712 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL-STTMTEIA-------IGSNQISD-- 343 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~-------l~~~~~~~-- 343 (566)
.+|.+||+++|.++..++ .+.++ .|+.|.+.||.+..+....+... ..-|++|. ++...-..
T Consensus 275 rsL~rLDlSNN~is~Lp~-------sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 275 RSLERLDLSNNDISSLPY-------SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred hhhhhhcccCCccccCCc-------ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 999999999999988766 36777 89999999998763322221110 01122221 11111000
Q ss_pred --C-cc---hhhhccCCCCeecccCCcccccccccccCC--CCCCEEEccCCcccccCCccccCCCCCCeEeccCccccc
Q 046712 344 --T-IP---DVIANLVNLNALGVESNQLAGTIPLAIGEL--KSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQG 415 (566)
Q Consensus 344 --~-~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 415 (566)
. .+ ......-+.+.|++++-+++....+.|..- .-.+.+++++|++. ++|..+..+..+.+.-+.+++..+
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc
Confidence 0 01 123345678889999988886555555432 23788999999998 788887777766665555555444
Q ss_pred cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcccc
Q 046712 416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLG 495 (566)
Q Consensus 416 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~ 495 (566)
-.|..+..+++|..|++++|.+. ..|..++.+..+ +.+++++|++. ..|..+.....++.+-.++|.+....+..+.
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 77788889999999999988876 678888888775 99999999887 6777777777788888888999866666699
Q ss_pred CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccC
Q 046712 496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556 (566)
Q Consensus 496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 556 (566)
++.+|.+||+.+|.+. .+|..+++|++|++|++.||++. ..++.+-.......|..-++
T Consensus 503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD 561 (565)
T ss_pred hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence 9999999999999998 78999999999999999999998 55555444444444444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=3.5e-35 Score=291.44 Aligned_cols=470 Identities=28% Similarity=0.336 Sum_probs=214.8
Q ss_pred cCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCC
Q 046712 50 LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNL 129 (566)
Q Consensus 50 ~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 129 (566)
+|..+....+++.|+++.|-+.....+.+.+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~ 90 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNM 90 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhh
Confidence 3333444444555555555443222223333444555555555543 34444555555555555555555 444555555
Q ss_pred CCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecc
Q 046712 130 LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIH 209 (566)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~ 209 (566)
.+|+++.|..|... .+|..+..+.+|++|+++.|.+. ..|..+..+..+..+..++|......... .++++++.
T Consensus 91 ~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~ik~~~l~ 164 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQT----SIKKLDLR 164 (1081)
T ss_pred hcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccc----cchhhhhh
Confidence 56666666555555 45555555666666666665554 45555555555555555555111111111 14444444
Q ss_pred cccccccCCCCCCCCCCCCcE-EEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCC
Q 046712 210 TNRFHGSVPLDNGVNLPNLRY-FSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT 288 (566)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (566)
.+.+.+.++... ..+++ |++++|.+.. ..+..+++|+.++...|.+.... ..-++++.|+.+.|.+..
T Consensus 165 ~n~l~~~~~~~i----~~l~~~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 165 LNVLGGSFLIDI----YNLTHQLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTT 233 (1081)
T ss_pred hhhcccchhcch----hhhheeeecccchhhh---hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCccee
Confidence 444443333322 22222 5555555441 12334455555555554443211 122455555555555442
Q ss_pred cCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccc
Q 046712 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT 368 (566)
Q Consensus 289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 368 (566)
.... ....+|+.++++.+++. ..|.++... .+++.+....|.++ .+|..+....+|+.|....|++. -
T Consensus 234 ~~~~--------p~p~nl~~~dis~n~l~-~lp~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-y 301 (1081)
T KOG0618|consen 234 LDVH--------PVPLNLQYLDISHNNLS-NLPEWIGAC-ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-Y 301 (1081)
T ss_pred eccc--------cccccceeeecchhhhh-cchHHHHhc-ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence 2111 11234555555555555 223333332 55555555555553 33444444555555555555554 2
Q ss_pred ccccccCCCCCCEEEccCCcccccCCcc-ccCCC-CCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhh
Q 046712 369 IPLAIGELKSIQILFLNENFLRGTIPSS-LGNLT-LLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLL 446 (566)
Q Consensus 369 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 446 (566)
.|...++.++|+.|++..|.+. ..|.. +.-.. +|+.|+.+.+++.....-.=...+.|..|++.+|.+++.....+.
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~ 380 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV 380 (1081)
T ss_pred CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence 3333444555555555555554 22221 11111 134444444443311111111234444555555554443333333
Q ss_pred hhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCE
Q 046712 447 RIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITE 526 (566)
Q Consensus 447 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 526 (566)
....+ +.|+|++|++.......+.+++.|++|++|||.++ .+|..+..+..|++|..-+|.+. ..| .+..+++|+.
T Consensus 381 ~~~hL-KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 381 NFKHL-KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred cccce-eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 33333 55555555554333344445555555555555554 44444555555555555555544 333 4444555555
Q ss_pred EeCCCCccccc-cCccccccccCceeecccC
Q 046712 527 LDLSRNNLSGH-IPQYLENLSFLLFLNMSYN 556 (566)
Q Consensus 527 L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n 556 (566)
+|++.|.++.. +|+.... +.|++||++||
T Consensus 457 lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred EecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 55555555432 2222221 45555555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-34 Score=287.76 Aligned_cols=464 Identities=26% Similarity=0.336 Sum_probs=376.1
Q ss_pred EEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEeccccc
Q 046712 62 SINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENH 141 (566)
Q Consensus 62 ~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 141 (566)
.+|.+.+.+. .+|..+..-..++.|+++.|.+...+.+.+...-+|++|++++|++. ..|..+..+.+|+.|+++.|.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 3567777776 67777766666999999999776655666667777999999999988 778889999999999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCC
Q 046712 142 LKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDN 221 (566)
Q Consensus 142 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 221 (566)
+. ..|.+...+.+|+++.|.+|... .+|..+..+++|++|++++|.+...+..+..+..+..+..++|.....++.
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-- 155 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-- 155 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence 98 78999999999999999999987 899999999999999999999998888888888899999988833322221
Q ss_pred CCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhcc
Q 046712 222 GVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLT 301 (566)
Q Consensus 222 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 301 (566)
..++.+++..+.+...+......+.. .+++..|.+. ...+..+.+|+.+....|.+.....
T Consensus 156 ----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~---------- 216 (1081)
T KOG0618|consen 156 ----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI---------- 216 (1081)
T ss_pred ----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----------
Confidence 22777888888776655555554444 5999988876 3346778889988888887765432
Q ss_pred CCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCE
Q 046712 302 NCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQI 381 (566)
Q Consensus 302 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 381 (566)
.-++|+.|+..+|.++.... ...+.++++++++.+.+++ +|.|+..+.+|+.++...|.++ ..|..+....+|+.
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS 291 (1081)
T ss_pred cCcchheeeeccCcceeecc---ccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence 44789999999999883332 2234799999999999985 5699999999999999999997 66777778899999
Q ss_pred EEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC-CCcEEEccCCcceeccchhhhhhcccceEEEccCC
Q 046712 382 LFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ-NLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN 460 (566)
Q Consensus 382 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 460 (566)
+.+..|.+. -+|.....+.+|++|++..|++....+..+.... +++.+..+.+++.. .|..-.+....++.|++.+|
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANN 369 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcC
Confidence 999999998 6676777799999999999998843333333333 36777777777663 33333334444588999999
Q ss_pred cccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCc
Q 046712 461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ 540 (566)
Q Consensus 461 ~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 540 (566)
.+++.....+.++.+|+.|++++|++.......+.+++.|+.|+|++|+++ .+|+...+++.|++|...+|.+. ..|
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP- 446 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP- 446 (1081)
T ss_pred cccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-
Confidence 999999899999999999999999998555567889999999999999999 68899999999999999999998 566
Q ss_pred cccccccCceeecccCcCcc
Q 046712 541 YLENLSFLLFLNMSYNHFEG 560 (566)
Q Consensus 541 ~l~~l~~L~~L~l~~n~~~~ 560 (566)
.+.+++.|+.+|++.|.++-
T Consensus 447 e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhhhcCcceEEecccchhhh
Confidence 77899999999999998763
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.5e-33 Score=263.82 Aligned_cols=365 Identities=24% Similarity=0.363 Sum_probs=314.4
Q ss_pred CCcEEEEEcCCCccc-cccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEE
Q 046712 33 RQRVTGLDLRHQSVG-GVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF 111 (566)
Q Consensus 33 ~~~~~~l~l~~~~i~-~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 111 (566)
.+-|+.+|+++|.++ +.+|.....++.+++|.+...++. .+|+.++.+.+|++|.+++|++. .....+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 377899999999998 678889999999999999999997 89999999999999999999986 355568889999999
Q ss_pred EcCCCcCCC-CcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcc-cccCCcccEeeccccc
Q 046712 112 EASNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPST-ISHVRNLISFNVAYNQ 189 (566)
Q Consensus 112 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~~~ 189 (566)
++..|++.. -+|..+.++..|.+||+|+|++. +.|..+...+++-+|++++|.|. .+|.. +-++.-|-.|++++|.
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 999998753 57888999999999999999999 89999999999999999999998 45554 6788999999999999
Q ss_pred ceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccc-ccCcccccccCCCCeeecccccccccccc
Q 046712 190 FSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT-GSLQDSLSNATNLQGLEINRNLFSGKVSI 268 (566)
Q Consensus 190 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 268 (566)
+...++.+..+..|++|.+++|.+......... .+.+|++|.+++++-+ ..++.++..+.+|..++++.|.+. .++.
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 999999999999999999999977532222222 6788999999988544 457778889999999999999986 6778
Q ss_pred cccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC-cch
Q 046712 269 NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT-IPD 347 (566)
Q Consensus 269 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~ 347 (566)
++..+++|++|++++|.++..... ...-.+|+.|+++.|+++ ..|.++..+ +.|+.|.+.+|.++.. +|.
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~-------~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMT-------EGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeecc-------HHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCCcc
Confidence 889999999999999999876542 223367999999999998 788888876 8999999999987633 778
Q ss_pred hhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046712 348 VIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414 (566)
Q Consensus 348 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 414 (566)
.++++.+|+.+...+|.+. ..|+.++.|..|+.|.+++|.+. .+|.++.-++.|+.||+..|+-.
T Consensus 311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 8899999999999999887 88999999999999999999987 78999999999999999988643
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=8.1e-32 Score=256.39 Aligned_cols=321 Identities=26% Similarity=0.454 Sum_probs=195.8
Q ss_pred cCCCCCCEEecCCCcccc-cCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCC
Q 046712 55 GNLNFLRSINLPNNSFRG-KIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ 133 (566)
Q Consensus 55 ~~l~~L~~L~ls~~~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 133 (566)
+-++.++-+|+++|.+++ .+|..+..+++++.|.+....+. ..|..++.+.+|++|.+.+|++. .+...++.++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 456677778888887773 47777778888888888777765 56777777888888888887776 4555677777788
Q ss_pred EEecccccCC-CCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccc
Q 046712 134 ILNIAENHLK-GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNR 212 (566)
Q Consensus 134 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 212 (566)
.+.+.+|.+. +-+|..+..+..|..||+++|++. ..|..+...+++..|++++|.+.+++.
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn----------------- 143 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN----------------- 143 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc-----------------
Confidence 8877777764 346777777777777777777776 667777777777777777776654433
Q ss_pred ccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCC
Q 046712 213 FHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTN 292 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 292 (566)
..+.++..|-.|++++|.+. .++.....+..|++|.+++|.+.-.- +
T Consensus 144 -------~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ---L---------------------- 190 (1255)
T KOG0444|consen 144 -------SLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ---L---------------------- 190 (1255)
T ss_pred -------hHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH---H----------------------
Confidence 33334445555555555554 23333455555666666655543111 1
Q ss_pred ChhhhhhccCCCCCCEEEccCCeee-eecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccc
Q 046712 293 DLDFITLLTNCTKLEVLDLHSNRFG-GVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPL 371 (566)
Q Consensus 293 ~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 371 (566)
..+..+.+|++|.+++.+.+ .-+|..+..+ .+|..++++.|.+. .+|+.+..+++|+.|++++|+++ .+..
T Consensus 191 -----rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~ 262 (1255)
T KOG0444|consen 191 -----RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNM 262 (1255)
T ss_pred -----hcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeec
Confidence 11223334444444444332 1122222222 34445555555444 45666666777777777777776 3344
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc-ccCCCCCcCCCCCcEEEccCCcc
Q 046712 372 AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ-GKIPPSNGNCQNLILLTTRKNKL 437 (566)
Q Consensus 372 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~ 437 (566)
..+...+|++|+++.|+++ .+|..+..++.|+.|.+.+|++. ..+|..++.+..|+.+..++|.+
T Consensus 263 ~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 263 TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 4556667777777777776 66777777777777777777665 23444444444444444444433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=9.1e-23 Score=226.51 Aligned_cols=381 Identities=15% Similarity=0.171 Sum_probs=249.3
Q ss_pred CCCCCCCCCcCCCCCCcccccccCCCCCcEEEEEcCCCcccc--ccCccCcCCCCCCEEecCCCcc------cccCCccc
Q 046712 7 DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGG--VLSPFVGNLNFLRSINLPNNSF------RGKIPHEV 78 (566)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~--~~~~~~~~l~~L~~L~ls~~~l------~~~~~~~~ 78 (566)
+|.+....|.+.+-|-..... ..+.+++.+.+....+.. ..+.+|.++++|+.|.+..+.. ...+|..+
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~---~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~ 584 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDN---TGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF 584 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhC---cccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch
Confidence 555555566654432222221 122566766665544432 3456789999999999976532 22466677
Q ss_pred CCCC-CCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCC
Q 046712 79 GNLF-RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQ 157 (566)
Q Consensus 79 ~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 157 (566)
..++ +|+.|++.++.+. ..|..| ...+|+.|++.++++. .++..+..+++|++|+++++.....+|. ++.+++|+
T Consensus 585 ~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 585 DYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred hhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 6664 6999999998875 445555 5689999999999988 6777888999999999998765546664 78899999
Q ss_pred EEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccc
Q 046712 158 EIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNN 237 (566)
Q Consensus 158 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 237 (566)
+|++++|.....+|..+..+++|+.|++++|......+....+++|+.|++++|.....+|. ...+|+.|+++++.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETA 736 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCc
Confidence 99999987766889999999999999999986555555333788899999998865544442 24678888888887
Q ss_pred ccccCcccccccCCCCeeeccccccccc-------ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEE
Q 046712 238 LTGSLQDSLSNATNLQGLEINRNLFSGK-------VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLD 310 (566)
Q Consensus 238 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 310 (566)
+.. .+..+ .+++|+.|.+.++..... .+......++|+.|++++|......+ ..+..+++|+.|+
T Consensus 737 i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~L~ 808 (1153)
T PLN03210 737 IEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEHLE 808 (1153)
T ss_pred ccc-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCEEE
Confidence 763 33322 466777777765432111 11112234567777777665433222 3455667777777
Q ss_pred ccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCccc
Q 046712 311 LHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLR 390 (566)
Q Consensus 311 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 390 (566)
+++|......|... ..++|+.|++++|.....+|.. .++|+.|++++|.++ ..|..+..+++|+.|++++|.-.
T Consensus 809 Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 809 IENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 77764433444333 2356777777766544333332 256667777777666 44556666677777777765544
Q ss_pred ccCCccccCCCCCCeEeccCcc
Q 046712 391 GTIPSSLGNLTLLTQLILEVNN 412 (566)
Q Consensus 391 ~~~~~~~~~~~~L~~L~l~~~~ 412 (566)
..++..+..+++|+.+++++|.
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CccCcccccccCCCeeecCCCc
Confidence 3455555666666666666664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.3e-21 Score=217.28 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=9.3
Q ss_pred CccCCCCCCEEeCcccc
Q 046712 469 KVGNLKNLVSLDISSNM 485 (566)
Q Consensus 469 ~~~~~~~L~~L~ls~~~ 485 (566)
.+..+++|+.+++++|.
T Consensus 888 ~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 888 NISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccccCCCeeecCCCc
Confidence 34455556666666553
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=8.9e-26 Score=204.11 Aligned_cols=286 Identities=21% Similarity=0.245 Sum_probs=180.9
Q ss_pred cccccCCCC---------CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCC-CcC
Q 046712 25 TGVTCGHRR---------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTN-NYF 94 (566)
Q Consensus 25 ~~~~~~~~~---------~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~-~~l 94 (566)
..|+|+.+. +....+.|..|.|+.+++.+|+.+++||+||+|+|.|+.+.|++|.++..|.+|.+-+ |+|
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 347777655 6778888888888888888888888888888888888877888888888877765544 888
Q ss_pred CCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc-------
Q 046712 95 LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG------- 167 (566)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~------- 167 (566)
+......|+++..|+.|.+.-|++.-.....+..+++|..|.+.+|.+...-...+..+..++.+.+..|.+.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 8777778888888888888888877666777888888888888888887333336777788888877766631
Q ss_pred -----ccCCcccccCCcccEeecccccceecCCc-cc-CcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccc
Q 046712 168 -----GRIPSTISHVRNLISFNVAYNQFSGMIPP-IY-NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG 240 (566)
Q Consensus 168 -----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 240 (566)
...|..++...-.....+.+.++....+. +. ....+..=-.+.+...+..|...+..+++|++|++++|+++.
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 11112222222222222222222222210 00 101111101111222223344444566677777777777666
Q ss_pred cCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCee
Q 046712 241 SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF 316 (566)
Q Consensus 241 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 316 (566)
.-..+|.....+++|.+.+|++...-...|.++..|+.|++.+|+++...+ .+|.....|..|.+-.|.+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~------~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP------GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec------ccccccceeeeeehccCcc
Confidence 666666666677777777766665555556666677777777776666555 3455556666666655544
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.7e-24 Score=194.62 Aligned_cols=399 Identities=19% Similarity=0.211 Sum_probs=218.9
Q ss_pred cEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccC-CcCcccCCcccccCCcccEeeccc
Q 046712 109 MKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG-NRLGGRIPSTISHVRNLISFNVAY 187 (566)
Q Consensus 109 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~ 187 (566)
..+++..|+|+.+.+.+|+.+++||.|||++|.|+...|++|..++.+..|-+.+ |+|+..-..+|+++..++.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4455555555555555555555555555555555545555555555554444443 455433333344455444444433
Q ss_pred ccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeeccccccccccc
Q 046712 188 NQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS 267 (566)
Q Consensus 188 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 267 (566)
| ++. -++...+..++++..|.+..|.+.......+..+..++.+++..|.+..
T Consensus 150 n-----------------------~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic--- 202 (498)
T KOG4237|consen 150 N-----------------------HIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC--- 202 (498)
T ss_pred h-----------------------hhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc---
Confidence 3 322 2333333466777777777777765555567777777777776655321
Q ss_pred ccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcc-
Q 046712 268 INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIP- 346 (566)
Q Consensus 268 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 346 (566)
..+++.+... +..+.+ .+..+.......+.+.++..+-+..+......+..-..+.|......|
T Consensus 203 --dCnL~wla~~-~a~~~i------------etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~ 267 (498)
T KOG4237|consen 203 --DCNLPWLADD-LAMNPI------------ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA 267 (498)
T ss_pred --ccccchhhhH-Hhhchh------------hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH
Confidence 1111111110 000111 122222333333333333322222222211122111222333322333
Q ss_pred hhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCC
Q 046712 347 DVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQN 426 (566)
Q Consensus 347 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 426 (566)
..|..+++|++|++++|.++++.+.+|++...+++|.+..|++...-..+|.++..|+.|++++|+|+...|.+|....+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 35788899999999999998888888889999999999999887666668888899999999999998888888888888
Q ss_pred CcEEEccCCcceec-cchhhhhh--------------cccceEEEccCCcccc---cCCcCcc---------CCCCCCEE
Q 046712 427 LILLTTRKNKLSGI-VPRQLLRI--------------ITLSVLLDLSDNLLSG---HFPTKVG---------NLKNLVSL 479 (566)
Q Consensus 427 L~~L~l~~~~~~~~-~~~~~~~~--------------~~~l~~L~l~~~~~~~---~~~~~~~---------~~~~L~~L 479 (566)
|.+|.+-.|++.-. -...+... +..++.+.+++..+.+ ..++... .++-+.+.
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tV 427 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTV 427 (498)
T ss_pred eeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhh
Confidence 88888877664311 11111111 1112223333222211 0111100 11112111
Q ss_pred -eCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccC
Q 046712 480 -DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556 (566)
Q Consensus 480 -~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 556 (566)
-.|+..+. .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|++...--..|.++++|.+|-|++|
T Consensus 428 vRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 428 VRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred Hhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 11222222 3333332 34577888888888 56655 56778 8999999988666678888888988888876
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.8e-19 Score=182.66 Aligned_cols=264 Identities=27% Similarity=0.315 Sum_probs=147.9
Q ss_pred CCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCC
Q 046712 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL 306 (566)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 306 (566)
.-..|+++.+.++. +|..+. ++|+.|.+.+|.++.... ..++|++|++++|.++..+. ..++|
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----------lp~sL 264 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----------LPPGL 264 (788)
T ss_pred CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----------ccccc
Confidence 35567777776663 343332 367777777777664321 24677777777777665432 13567
Q ss_pred CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccC
Q 046712 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386 (566)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 386 (566)
+.|++++|.+.. +|. .++.|+.|++.+|.++. +|. ..++|+.|++++|.+++. |.. ..+|+.|++++
T Consensus 265 ~~L~Ls~N~L~~-Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 265 LELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYN 331 (788)
T ss_pred ceeeccCCchhh-hhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---ccccccccccc
Confidence 777777776652 221 23566777777776663 332 235677777777776632 221 23566667777
Q ss_pred CcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccC
Q 046712 387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF 466 (566)
Q Consensus 387 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 466 (566)
|.++ .+|. + ..+|+.|++++|++. .+|.. .++|+.|++++|.+.. +|. .+..++.|++++|.+.+ .
T Consensus 332 N~L~-~LP~-l--p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~----l~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 332 NQLT-SLPT-L--PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTS-L 397 (788)
T ss_pred Cccc-cccc-c--ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccc----cccccceEEecCCcccC-C
Confidence 7665 3332 1 136677777777666 33322 2456666666666653 332 12234566666666653 2
Q ss_pred CcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccc
Q 046712 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYL 542 (566)
Q Consensus 467 ~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 542 (566)
+.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|+.+..+++|+.|++++|++++..+..+
T Consensus 398 P~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 221 245666666666665 34432 234566666666665 456666666666666666666665555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.9e-18 Score=178.26 Aligned_cols=262 Identities=22% Similarity=0.271 Sum_probs=133.9
Q ss_pred CceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECC
Q 046712 203 LQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLG 282 (566)
Q Consensus 203 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 282 (566)
-..|+++.+.++ .+|.... ++|+.|++.+|+++.. +. ..++|+.|++++|.++.... ..++|+.|++.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccC----cccccceeecc
Confidence 445566666555 4454332 3566666666655532 21 13566666666666553321 13456666666
Q ss_pred CCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccC
Q 046712 283 ENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVES 362 (566)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 362 (566)
+|.+...+. .+++|+.|++++|++.. +|. .+++|+.|++++|.+.+ +|.. ...|+.|++++
T Consensus 271 ~N~L~~Lp~----------lp~~L~~L~Ls~N~Lt~-LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 271 SNPLTHLPA----------LPSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred CCchhhhhh----------chhhcCEEECcCCcccc-ccc----cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 665543221 12455666666666552 221 12556666666666553 2321 23455666666
Q ss_pred CcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccc
Q 046712 363 NQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVP 442 (566)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 442 (566)
|.+++ +|. + ..+|++|++++|.++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+.+ +|
T Consensus 332 N~L~~-LP~-l--p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP 398 (788)
T PRK15387 332 NQLTS-LPT-L--PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP 398 (788)
T ss_pred Ccccc-ccc-c--ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CC
Confidence 66653 222 1 135666666666665 33321 235556666666655 23322 2356666666666553 22
Q ss_pred hhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcC
Q 046712 443 RQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPST 517 (566)
Q Consensus 443 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 517 (566)
. .+..++.|++++|.+.+ .|.. ..+|+.|++++|.+. .+|..+..+++|+.|+|++|++++..+..
T Consensus 399 ~----l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 399 V----LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred C----cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 2 12234566666666653 2221 234566666666665 45555666666666666666665544433
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2.2e-19 Score=173.96 Aligned_cols=90 Identities=24% Similarity=0.279 Sum_probs=62.7
Q ss_pred CccCCCCCCEEeCccccccccCCcccc-----CCCCCcEEeCCCCcccc----cCCcCCcCCCCCCEEeCCCCccccc--
Q 046712 469 KVGNLKNLVSLDISSNMFSGEIPTTLG-----GCTSLEYLGMQDNSFTI----SIPSTLSSLKSITELDLSRNNLSGH-- 537 (566)
Q Consensus 469 ~~~~~~~L~~L~ls~~~l~~~~~~~~~-----~~~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~-- 537 (566)
.+..+++|+.|++++|.+.+.....+. ..+.|++|++++|.+++ .+.+.+..+++|+.+++++|.+...
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 345678888999988887743222222 24789999999998762 2344566678899999999988854
Q ss_pred --cCcccccc-ccCceeecccCcC
Q 046712 538 --IPQYLENL-SFLLFLNMSYNHF 558 (566)
Q Consensus 538 --~~~~l~~l-~~L~~L~l~~n~~ 558 (566)
..+.+... +.|+++++.+|++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCCC
Confidence 44444444 6888999988864
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=3.5e-17 Score=170.16 Aligned_cols=246 Identities=23% Similarity=0.369 Sum_probs=153.8
Q ss_pred CCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccC
Q 046712 251 NLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTT 330 (566)
Q Consensus 251 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 330 (566)
+...|+++++.++..+ ..+ .+.|+.|++++|.++..+.. .+++|+.|++++|.+. .+|..+ ++.
T Consensus 179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~LtsLP~~---------l~~nL~~L~Ls~N~Lt-sLP~~l---~~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELKSLPEN---------LQGNIKTLYANSNQLT-SIPATL---PDT 242 (754)
T ss_pred CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCCcCChh---------hccCCCEEECCCCccc-cCChhh---hcc
Confidence 4567777777766433 222 25688888888887765431 1247888888888776 344332 357
Q ss_pred CcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccC
Q 046712 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEV 410 (566)
Q Consensus 331 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 410 (566)
|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++
T Consensus 243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence 888888888776 3455443 46888888888777 3454443 47888888888776 3444332 4677788888
Q ss_pred ccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccC
Q 046712 411 NNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEI 490 (566)
Q Consensus 411 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~ 490 (566)
|.+.. +|..+ .++|+.|++++|.+.+ +|..+ ++.++.|++++|++. ..|..+ .++|+.|+|++|++. .+
T Consensus 314 N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 314 NSLTA-LPETL--PPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NL 382 (754)
T ss_pred Ccccc-CCccc--cccceeccccCCcccc-CChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CC
Confidence 77763 34332 2577777777777664 34332 244577777777666 333333 256777777777776 45
Q ss_pred CccccCCCCCcEEeCCCCcccccCCcCCc----CCCCCCEEeCCCCccc
Q 046712 491 PTTLGGCTSLEYLGMQDNSFTISIPSTLS----SLKSITELDLSRNNLS 535 (566)
Q Consensus 491 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~----~l~~L~~L~l~~n~~~ 535 (566)
|..+. .+|+.|++++|.+. .+|+.+. .++.+..|++.+|++.
T Consensus 383 P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 54443 35777777777766 4454433 3466677777777765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=4.7e-18 Score=164.74 Aligned_cols=266 Identities=21% Similarity=0.251 Sum_probs=128.5
Q ss_pred ccCCCCeeeccccccccc----ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchh
Q 046712 248 NATNLQGLEINRNLFSGK----VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS 323 (566)
Q Consensus 248 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 323 (566)
.+..|+.+++.++.++.. .+..+...+.+++++++++.+.............+..+++|+.|++++|.+.+..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 334455555555444221 1112334444555555554443211111111223444556666666666555433333
Q ss_pred Hhhhc--cCCcEEEccCCCCCCC----cchhhhcc-CCCCeecccCCccccc----ccccccCCCCCCEEEccCCccccc
Q 046712 324 LANLS--TTMTEIAIGSNQISDT----IPDVIANL-VNLNALGVESNQLAGT----IPLAIGELKSIQILFLNENFLRGT 392 (566)
Q Consensus 324 ~~~~~--~~L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~ 392 (566)
+.... +.|++|++++|.+++. +...+..+ ++|++|++++|.+++. ....+..+++|++|++++|.+++.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 33321 1266666666655421 12233444 6677777777766522 223445556677777777766531
Q ss_pred ----CCccccCCCCCCeEeccCcccccc----CCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712 393 ----IPSSLGNLTLLTQLILEVNNLQGK----IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG 464 (566)
Q Consensus 393 ----~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 464 (566)
++..+..+++|+.|++++|.+.+. +...+..+++|++|++++|.+.+.....+....
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~--------------- 245 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL--------------- 245 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH---------------
Confidence 222334455777777777765422 223344566677777776665542222222110
Q ss_pred cCCcCccCCCCCCEEeCccccccc----cCCccccCCCCCcEEeCCCCccccc----CCcCCcCC-CCCCEEeCCCCc
Q 046712 465 HFPTKVGNLKNLVSLDISSNMFSG----EIPTTLGGCTSLEYLGMQDNSFTIS----IPSTLSSL-KSITELDLSRNN 533 (566)
Q Consensus 465 ~~~~~~~~~~~L~~L~ls~~~l~~----~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l-~~L~~L~l~~n~ 533 (566)
....+.|++|++++|.+++ .+...+..+++|+++++++|.+... ....+... +.|+.+++.+++
T Consensus 246 -----~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 246 -----LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred -----hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 0023456666666665541 1122344445666666666666533 22233333 566666666554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=7.6e-17 Score=167.70 Aligned_cols=292 Identities=21% Similarity=0.301 Sum_probs=187.8
Q ss_pred CCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCC
Q 046712 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305 (566)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 305 (566)
.+...|+++++.++. ++..+ .+.++.|++++|.++.... .+ .++|+.|++++|.+...+.. + .++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~-~l--~~nL~~L~Ls~N~LtsLP~~-------l--~~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSLPE-NL--QGNIKTLYANSNQLTSIPAT-------L--PDT 242 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcCCh-hh--ccCCCEEECCCCccccCChh-------h--hcc
Confidence 456778888877764 33323 2478888888888875433 22 25788888888887754431 1 247
Q ss_pred CCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEcc
Q 046712 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN 385 (566)
Q Consensus 306 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 385 (566)
|+.|++++|.+. .+|..+ +..|+.|++++|.+.. +|..+. ++|+.|++++|+++. +|..+. ++|+.|+++
T Consensus 243 L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 243 IQEMELSINRIT-ELPERL---PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ 312 (754)
T ss_pred ccEEECcCCccC-cCChhH---hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence 888888888887 445443 3578888888888874 555442 578888888888874 343332 478888888
Q ss_pred CCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc
Q 046712 386 ENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH 465 (566)
Q Consensus 386 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 465 (566)
+|.++ .+|..+ .++|+.|++++|.+++ +|..+ +++|+.|++++|++. .+|..+ ++.++.|++++|.+..
T Consensus 313 ~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 313 SNSLT-ALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTN- 381 (754)
T ss_pred CCccc-cCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCC-
Confidence 88887 345433 3678888888888773 55544 368888888888876 345433 3456888888888873
Q ss_pred CCcCccCCCCCCEEeCccccccccCCccc----cCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc-cccCc
Q 046712 466 FPTKVGNLKNLVSLDISSNMFSGEIPTTL----GGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS-GHIPQ 540 (566)
Q Consensus 466 ~~~~~~~~~~L~~L~ls~~~l~~~~~~~~----~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~ 540 (566)
.|..+. .+|+.|++++|++. .+|..+ ..++.+..|++.+|++.. ..+++|+.| ++.+... ..++.
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~ 451 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLF 451 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccc
Confidence 444333 36888888888887 555443 335778888888888763 233444444 2333322 12333
Q ss_pred cccccccCceeecccCcCcccCC
Q 046712 541 YLENLSFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 541 ~l~~l~~L~~L~l~~n~~~~~~p 563 (566)
.....+.++....-.+.+++++|
T Consensus 452 ~~~~~~~l~~~~~l~~a~~~Wl~ 474 (754)
T PRK15370 452 AMGDFSIVRVTRPLHQAVQGWLT 474 (754)
T ss_pred cccccccccccchHHHHHhccCC
Confidence 33344445544434445555555
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-18 Score=139.18 Aligned_cols=167 Identities=29% Similarity=0.494 Sum_probs=138.8
Q ss_pred hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCc
Q 046712 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI 428 (566)
Q Consensus 349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 428 (566)
+..+.+++.|.+++|+++ ..|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|.+. ..|..|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445678888999999998 55667888899999999999998 78888899999999999988877 7788888889888
Q ss_pred EEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCC
Q 046712 429 LLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508 (566)
Q Consensus 429 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n 508 (566)
.|++.+|++... ..|+.|..+..|+.|++++|.+. .+|..++++++|+.|.+++|
T Consensus 106 vldltynnl~e~------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 106 VLDLTYNNLNEN------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hhhccccccccc------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 888888776521 45566677788899999999988 88889999999999999999
Q ss_pred cccccCCcCCcCCCCCCEEeCCCCccccccCcccccc
Q 046712 509 SFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 545 (566)
Q Consensus 509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 545 (566)
.+. ++|..++.++.|++|++.+|+++ ++|..+.++
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 988 78899999999999999999998 555544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-17 Score=134.40 Aligned_cols=155 Identities=21% Similarity=0.389 Sum_probs=79.2
Q ss_pred CCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEE
Q 046712 56 NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL 135 (566)
Q Consensus 56 ~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 135 (566)
++.+++.|.+|+|+++ .+|.-+..+.+|+.|++++|+++ ..|..++.+++|+.|++.-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3344455555555554 33334455555555555555544 33444555555555555555444 445555555555555
Q ss_pred ecccccCC-CCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712 136 NIAENHLK-GQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 136 ~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 214 (566)
|+..|.+. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+.+.+..++.++.|++|++.+|+++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 55544443 234555555555555555555544 4555555555555555555555544445555555555555555554
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.2e-13 Score=125.16 Aligned_cols=206 Identities=25% Similarity=0.249 Sum_probs=112.1
Q ss_pred cCCcEEEccCCCCCCCcc-hhhhccCCCCeecccCCccccc--ccccccCCCCCCEEEccCCcccccCC-ccccCCCCCC
Q 046712 329 TTMTEIAIGSNQISDTIP-DVIANLVNLNALGVESNQLAGT--IPLAIGELKSIQILFLNENFLRGTIP-SSLGNLTLLT 404 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~ 404 (566)
.+|+++.+.++.+..... .....|++++.|+++.|-+... .......+++|+.|+++.|.+..-.. ..-..++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 467777777776653211 3556678888888888776543 22344567788888888877642111 1112356777
Q ss_pred eEeccCcccccc-CCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccC-CcCccCCCCCCEEeCc
Q 046712 405 QLILEVNNLQGK-IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF-PTKVGNLKNLVSLDIS 482 (566)
Q Consensus 405 ~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ls 482 (566)
.|.++.|.++-. +......+|+|+.|++..|......... .+.+..++.|+|++|++.+.. ......++.|+.|+++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 777777776521 1223346777777777777422111111 122223366666666554321 1233456666666666
Q ss_pred cccccccC-Ccc-----ccCCCCCcEEeCCCCccccc-CCcCCcCCCCCCEEeCCCCccc
Q 046712 483 SNMFSGEI-PTT-----LGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 483 ~~~l~~~~-~~~-----~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
.|.+.+.- |.. -..+++|++|++..|++.+. ....+..+++|+.|.+.+|.+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66655221 111 23456666666666666421 1123444566666666666554
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=6.1e-12 Score=130.91 Aligned_cols=137 Identities=32% Similarity=0.539 Sum_probs=101.1
Q ss_pred cccCCCCCCCCCCCcCCCCCC----cccccccCCCC----CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc
Q 046712 2 KSQLQDPLGVTSSWNNSINLC----QWTGVTCGHRR----QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK 73 (566)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~ 73 (566)
|.++.+|.+ .+|.. +.|+ .|.|+.|.... ..++.|+|+++.+.+.+|..++++++|+.|++++|.+.+.
T Consensus 381 k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~ 457 (623)
T PLN03150 381 KSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN 457 (623)
T ss_pred HHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc
Confidence 445665543 47964 4543 79999996321 2588888888888888888888888888888888888877
Q ss_pred CCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCC-CCCCEEeccccc
Q 046712 74 IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNL-LMLQILNIAENH 141 (566)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~ 141 (566)
+|..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+++.+|..+... .++..+++.+|.
T Consensus 458 iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 88888888888888888888877777777788888888888887777777666542 345556665554
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=2.6e-13 Score=122.26 Aligned_cols=139 Identities=17% Similarity=0.279 Sum_probs=69.4
Q ss_pred CCCCCCEEEccCCcccc----cCCccccCCCCCCeEeccCccccccC----CCCCcCCCCCcEEEccCCcceeccchhhh
Q 046712 375 ELKSIQILFLNENFLRG----TIPSSLGNLTLLTQLILEVNNLQGKI----PPSNGNCQNLILLTTRKNKLSGIVPRQLL 446 (566)
Q Consensus 375 ~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 446 (566)
.-+.|+.+...+|++-+ .+...|...+.|+.+.+..|.+.... ...+..|++|+.|++++|-++......+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34456666666655532 12234445556666666666554221 12344566666666666655433222222
Q ss_pred hhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccc-----cCCCCCcEEeCCCCccccc----CCcC
Q 046712 447 RIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTL-----GGCTSLEYLGMQDNSFTIS----IPST 517 (566)
Q Consensus 447 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~-----~~~~~L~~L~L~~n~~~~~----~~~~ 517 (566)
..+..+++|++|++++|.+.......| ...++|++|.+.+|.++.. +..+
T Consensus 235 ---------------------kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 235 ---------------------KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred ---------------------HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 223345566666666666554333222 1245666666666655532 2223
Q ss_pred CcCCCCCCEEeCCCCcc
Q 046712 518 LSSLKSITELDLSRNNL 534 (566)
Q Consensus 518 l~~l~~L~~L~l~~n~~ 534 (566)
+...|.|+.|+|++|++
T Consensus 294 ~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcchhhHHhcCCcccc
Confidence 33456666666666666
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=1e-12 Score=118.58 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=101.3
Q ss_pred cCCCCCcEEEccCCcceeccchh---hhhhcccceEEEccCCccccc----CCcCccCCCCCCEEeCcccccccc----C
Q 046712 422 GNCQNLILLTTRKNKLSGIVPRQ---LLRIITLSVLLDLSDNLLSGH----FPTKVGNLKNLVSLDISSNMFSGE----I 490 (566)
Q Consensus 422 ~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~l~~~----~ 490 (566)
+.-+.|++++..+|++.+..... .++..+.++.+.++.|.+... ...+|..+++|+.||+.+|-++.. .
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 45577888888888876443222 223334558888888877543 335678999999999999988733 3
Q ss_pred CccccCCCCCcEEeCCCCcccccCCcCC-----cCCCCCCEEeCCCCccccc----cCccccccccCceeecccCcC
Q 046712 491 PTTLGGCTSLEYLGMQDNSFTISIPSTL-----SSLKSITELDLSRNNLSGH----IPQYLENLSFLLFLNMSYNHF 558 (566)
Q Consensus 491 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~ 558 (566)
...++.+++|++|++++|.+.......+ ...|.|+.|.+.+|.++.. +...+...|.|+.|+|++|.+
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4567778999999999998876544333 2369999999999999853 444566789999999999988
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=2.7e-13 Score=129.63 Aligned_cols=170 Identities=27% Similarity=0.423 Sum_probs=80.2
Q ss_pred CeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712 356 NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN 435 (566)
Q Consensus 356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 435 (566)
...+++.|++. ++|..++.+..|+.+.++.|.+. .++..+.++..|+.++++.|+++ ..|..+..+| |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 44555666665 44555555566666666666665 55666666666666666666665 3444444444 444444444
Q ss_pred cceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCC
Q 046712 436 KLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP 515 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 515 (566)
+++ ..|+.+.-... +..++.+.|.+. ..+..+.++.+|+.|++..|++. ..|+.+. .-.|.+||++.|++. .+|
T Consensus 154 kl~-~lp~~ig~~~t-l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPT-LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred ccc-cCCcccccchh-HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecc
Confidence 433 22222221111 123333333333 22223344444444444444444 3333333 233444455544444 344
Q ss_pred cCCcCCCCCCEEeCCCCccc
Q 046712 516 STLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~~~ 535 (566)
-+|.+|+.|++|-|.+|+++
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 44444455555555444444
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=6.8e-12 Score=110.70 Aligned_cols=208 Identities=21% Similarity=0.177 Sum_probs=132.8
Q ss_pred cchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc-cccccCCCCCcC
Q 046712 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN-NLQGKIPPSNGN 423 (566)
Q Consensus 345 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~ 423 (566)
.|..+.-+.+|..+.++.|.-..+. .....-|.|+.+.+....+.. ...+-....+.-.--..- -..|.....+..
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~--~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD--VPSLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeecccccc--cccccchhhhcCccCCCCCccCCceEEecch
Confidence 3334445566777777776543221 112233566666655544431 111111111111111100 011112223334
Q ss_pred CCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEE
Q 046712 424 CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503 (566)
Q Consensus 424 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L 503 (566)
...|+.+++++|.+.. +.+. .++.+-++.|++++|.+.... .++.+++|+.||+|+|.+. ....+-.++.++++|
T Consensus 283 Wq~LtelDLS~N~I~~-iDES-vKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDES-VKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchhh-hhhh-hhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 5677888888887762 2333 344455588899999887433 3788999999999999998 555555578899999
Q ss_pred eCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC-ccccccccCceeecccCcCcccC
Q 046712 504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP-QYLENLSFLLFLNMSYNHFEGKV 562 (566)
Q Consensus 504 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~ 562 (566)
.|++|.+. ...++..+-+|..||+++|++..... ..++++|.|+.+.+.+|++.+..
T Consensus 358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99999886 34678889999999999999986533 47899999999999999998754
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.5e-10 Score=115.45 Aligned_cols=196 Identities=33% Similarity=0.527 Sum_probs=110.1
Q ss_pred EEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCC-CCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046712 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELK-SIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN 411 (566)
Q Consensus 333 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 411 (566)
.+....+.+..... .+...+.++.+++.++.++.. +......+ +|+.|++++|.+. .++..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666532222 234456788888888887743 33344443 7888888888876 44456677788888888888
Q ss_pred cccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCC
Q 046712 412 NLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIP 491 (566)
Q Consensus 412 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~ 491 (566)
++. .++......+.|+.|++++|.+... |... ..+..++.+.+++|... ..+..+..+.++..+.+.+|.+. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccC-chhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 777 4444444667777777777776632 2221 12222255555555322 22333444555555555555554 224
Q ss_pred ccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccccc
Q 046712 492 TTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI 538 (566)
Q Consensus 492 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 538 (566)
..+..++++++|++++|.++.. +. +..+.+++.|+++++.+....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccc
Confidence 4455555555555555555532 22 555555555555555555333
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=5.7e-12 Score=120.74 Aligned_cols=170 Identities=31% Similarity=0.497 Sum_probs=82.1
Q ss_pred CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccC
Q 046712 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386 (566)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 386 (566)
...+++.|++. .+|..+... ..|+.+.+..|.+. .+|..+.++..|+.++|+.|+++ .+|..++.++ |+.|-+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 44455555554 333332221 34444444444443 24444555555555555555554 3444444442 55555555
Q ss_pred CcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccC
Q 046712 387 NFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF 466 (566)
Q Consensus 387 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 466 (566)
|+++ .+|..++..+.|..|+.+.|.+. .+|..++.+.+|+.|.++.|++. .+|..
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~E---------------------- 207 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEE---------------------- 207 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHH----------------------
Confidence 5554 44444445555555555555554 34444455555555555555544 23333
Q ss_pred CcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712 467 PTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 467 ~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~ 511 (566)
+..++ |..||+|+|++. .+|..|.++..|++|-|.+|.+.
T Consensus 208 ---l~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 208 ---LCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ---HhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 33333 555555555554 45555555555555555555544
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=9.2e-11 Score=124.73 Aligned_cols=105 Identities=21% Similarity=0.321 Sum_probs=51.5
Q ss_pred CCCEEeCCCCc--CCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEE
Q 046712 83 RLQNLTLTNNY--FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEID 160 (566)
Q Consensus 83 ~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 160 (566)
.|++|-+.+|. +.......|..++.|++||+++|.--+.+|..++.+-+||+|+++++.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555555543 33333333445555555555554433345555555555555555555555 4555555555555555
Q ss_pred ccCCcCcccCCcccccCCcccEeecccc
Q 046712 161 VRGNRLGGRIPSTISHVRNLISFNVAYN 188 (566)
Q Consensus 161 l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 188 (566)
+..+......|.....+++|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 5544433233333444555555555443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.1e-11 Score=112.21 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=71.3
Q ss_pred cCCcccEeecccccceecCC---cccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccccc-CcccccccCC
Q 046712 176 HVRNLISFNVAYNQFSGMIP---PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGS-LQDSLSNATN 251 (566)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 251 (566)
.+++++.|++++|-+....+ -+..+++|+.|+++.|.+...........++.|+.|.++.|+++.. ....+..+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 34444444444443333222 1224444444444444433222222222466777777777776632 2223456777
Q ss_pred CCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeee
Q 046712 252 LQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 252 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (566)
|+.|.+..|...........-++.|+.|++++|++.+.... .....++.|..|+++.+.+.
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----YKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----cccccccchhhhhccccCcc
Confidence 77777777752222222334456677777777776554321 33556677777777766654
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=3.1e-10 Score=120.80 Aligned_cols=149 Identities=18% Similarity=0.243 Sum_probs=103.4
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCc--ccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEE
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNS--FRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKF 111 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~--l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 111 (566)
..+++.++-++.+....- =..++.|+.|-+.+|. +.....+.|..++.|++||+++|.--+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 456777777766543221 1344578888888875 443344447778889999998886666788888888899999
Q ss_pred EcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc--ccCCcccccCCcccEeec
Q 046712 112 EASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG--GRIPSTISHVRNLISFNV 185 (566)
Q Consensus 112 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~~l~~l~~L~~L~l 185 (566)
+++++.+. .+|..+++++.|.+|++..+......+.....+.+|++|.+...... ...-..+..+.+|+.+..
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 99988888 88888889999999998887765455666677889999888665422 112223344455555544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.2e-10 Score=95.52 Aligned_cols=104 Identities=27% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCCEEecCCCcccccCCcccC-CCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhc-cCCCCCCEEe
Q 046712 59 FLRSINLPNNSFRGKIPHEVG-NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKI-SNLLMLQILN 136 (566)
Q Consensus 59 ~L~~L~ls~~~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ 136 (566)
.+++|++++|.|+. +. .++ .+.+|+.|++++|.++.. ..+..+++|++|++++|+++.. ...+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 34555555554442 11 222 344455555555544321 2344445555555555554422 1122 2344555555
Q ss_pred cccccCCC-CCCccccCCCCCCEEEccCCcCc
Q 046712 137 IAENHLKG-QLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 137 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~ 167 (566)
+++|++.+ .-...+..+++|++|++.+|.++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55544431 11123344445555555555443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.9e-10 Score=96.43 Aligned_cols=126 Identities=21% Similarity=0.306 Sum_probs=47.0
Q ss_pred cCCCCCCCEEeCCCCcCCCcCccccc-cCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccc-cCCCC
Q 046712 78 VGNLFRLQNLTLTNNYFLGKILTDLS-HCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASI-GNLSA 155 (566)
Q Consensus 78 ~~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~ 155 (566)
+.+..++++|++.+|.|+.. +.+. .+.+|++|++++|.++. + ..+..++.|++|++++|.+. .+...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 55666789999999988643 3455 57889999999998884 3 35778899999999999988 454444 46889
Q ss_pred CCEEEccCCcCccc-CCcccccCCcccEeecccccceecCC----cccCcccCceEec
Q 046712 156 LQEIDVRGNRLGGR-IPSTISHVRNLISFNVAYNQFSGMIP----PIYNISSLQYIFI 208 (566)
Q Consensus 156 L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l 208 (566)
|++|++++|+|... ....++.+++|+.|++.+|++..... .+..+|+|+.|+-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 99999999988632 22456778888888888888865433 3445566666543
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.96 E-value=1.3e-09 Score=113.55 Aligned_cols=112 Identities=36% Similarity=0.501 Sum_probs=90.3
Q ss_pred ceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCC
Q 046712 452 SVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSR 531 (566)
Q Consensus 452 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 531 (566)
++.|+|++|.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|+.+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 36778888888888888888888888888888888878888888888888888888888888888888888888888888
Q ss_pred CccccccCcccccc-ccCceeecccCcCcccCC
Q 046712 532 NNLSGHIPQYLENL-SFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 532 n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p 563 (566)
|.+.+.+|..+... .++..+++.+|+.....|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 88888888877653 466778888876554444
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1.2e-09 Score=109.00 Aligned_cols=197 Identities=29% Similarity=0.444 Sum_probs=110.0
Q ss_pred EEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCC-CCCEEecccccCCCCCCccccCCCCCCEEEccCC
Q 046712 86 NLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLL-MLQILNIAENHLKGQLPASIGNLSALQEIDVRGN 164 (566)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 164 (566)
.++...+.+. .....+..++.++.+++.++.++ .++......+ +|+.|++++|.+. .++..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555555442 12223334455666666666665 4444444553 6666666666665 44455666666666666666
Q ss_pred cCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcc
Q 046712 165 RLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD 244 (566)
Q Consensus 165 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 244 (566)
.+. .+|......++|+.|++++|.+......+.....|+++.++++... ..+.... .+.++..+.+..+++.. ...
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceeee-ccc
Confidence 665 4444444556666666666666555544444455666666666322 1122121 45556666666665542 234
Q ss_pred cccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCC
Q 046712 245 SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTT 291 (566)
Q Consensus 245 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 291 (566)
.+..++.++.+++++|.+..... +....+++.++++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 45566667777777777665444 5666777777777776654433
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.5e-10 Score=100.97 Aligned_cols=129 Identities=24% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEE
Q 046712 377 KSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLD 456 (566)
Q Consensus 377 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 456 (566)
+.|+++++++|.|+ .+..+..-.|.++.|+++.|.+.... .+..+++|..|++++|.+... ..+......++.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~--~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAEC--VGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhh--hhhHhhhcCEeeee
Confidence 34555555555554 34444444555555555555544221 144455555555555554422 11111222235556
Q ss_pred ccCCcccccCCcCccCCCCCCEEeCccccccccC-CccccCCCCCcEEeCCCCcccc
Q 046712 457 LSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEI-PTTLGGCTSLEYLGMQDNSFTI 512 (566)
Q Consensus 457 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~-~~~~~~~~~L~~L~L~~n~~~~ 512 (566)
++.|.+.+. .++.++-+|..||+++|++.... ...++++|-|+.+.|.+|++..
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666555322 24556667777777777765221 2356777777777777777663
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=8.6e-10 Score=76.77 Aligned_cols=59 Identities=37% Similarity=0.554 Sum_probs=33.3
Q ss_pred CCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCc
Q 046712 499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNH 557 (566)
Q Consensus 499 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 557 (566)
+|++|++++|.++...++.|..+++|++|++++|.+....|..|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555555555555555555555555555555555555554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.3e-09 Score=75.87 Aligned_cols=61 Identities=38% Similarity=0.526 Sum_probs=50.4
Q ss_pred CCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcc
Q 046712 474 KNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNL 534 (566)
Q Consensus 474 ~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 534 (566)
|+|++|++++|++....+..|.++++|++|++++|.++...+++|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5688888888888866667888888888888888888877778888888888888888875
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.8e-09 Score=107.70 Aligned_cols=202 Identities=26% Similarity=0.270 Sum_probs=120.4
Q ss_pred hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCC-CCCcCCCCC
Q 046712 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSNGNCQNL 427 (566)
Q Consensus 349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L 427 (566)
+..+++|++|++++|.|+... .+..++.|+.|++++|.+.. ...+..++.|+.+++++|.+....+ . ...+.++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l 188 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISL 188 (414)
T ss_pred hhhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccch
Confidence 445666777777777666432 24455557777777777652 2344446667777777776653322 1 3566667
Q ss_pred cEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCC--CCCEEeCccccccccCCccccCCCCCcEEeC
Q 046712 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLK--NLVSLDISSNMFSGEIPTTLGGCTSLEYLGM 505 (566)
Q Consensus 428 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~--~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L 505 (566)
+.+++.+|.+............ ..+++..+.+..... +.... +|+.+++++|++. ..+..+..+..++.|++
T Consensus 189 ~~l~l~~n~i~~i~~~~~~~~l---~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 189 EELDLGGNSIREIEGLDLLKKL---VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDL 262 (414)
T ss_pred HHHhccCCchhcccchHHHHHH---HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccch
Confidence 7777777766533222221111 222555555542221 12222 3788888888887 44456777788888888
Q ss_pred CCCcccccCCcCCcCCCCCCEEeCCCCcccc---ccCcc-ccccccCceeecccCcCcccCC
Q 046712 506 QDNSFTISIPSTLSSLKSITELDLSRNNLSG---HIPQY-LENLSFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 506 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~-l~~l~~L~~L~l~~n~~~~~~p 563 (566)
.+|.+.. .+.+...+.+..+....+.+.. ..... ....+.++.+.+.+|++....+
T Consensus 263 ~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 263 SSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 8887763 2456666777777777777652 22222 4566778888888887776554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=2.8e-09 Score=106.35 Aligned_cols=240 Identities=28% Similarity=0.306 Sum_probs=146.6
Q ss_pred CCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEE
Q 046712 304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF 383 (566)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 383 (566)
+.++.++............ . .....++.+.+..+.+.. ....+..+.+|..+++.+|.+..... .+..+++|+.|+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~-~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ 124 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-V-ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLD 124 (414)
T ss_pred chhhhhcchhccccchhhh-H-HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchhee
Confidence 4556666655533322111 0 222566666677776653 22235667888888888888874432 266788888888
Q ss_pred ccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccc
Q 046712 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS 463 (566)
Q Consensus 384 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 463 (566)
+++|.|++. ..+..++.|+.|++.+|.+... ..+..++.|+.+++++|++....+.....+..+ +.+++.+|.+.
T Consensus 125 ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l-~~l~l~~n~i~ 199 (414)
T KOG0531|consen 125 LSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISL-EELDLGGNSIR 199 (414)
T ss_pred ccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccch-HHHhccCCchh
Confidence 888888743 3455667788888888887632 234457888888888888775444102222222 55677777665
Q ss_pred ccCCcCccCCCCCCEEeCccccccccCCccccCCCC--CcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcc
Q 046712 464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTS--LEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY 541 (566)
Q Consensus 464 ~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~--L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 541 (566)
.. ..+..+..+..+++..|.+....+ +..+.. |+.+++++|.+. ..++++..++.+..|++..+++... +.
T Consensus 200 ~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 200 EI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred cc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cc
Confidence 32 223334445555777776653221 222333 788888888877 3446777788888888888877633 33
Q ss_pred ccccccCceeecccCcCc
Q 046712 542 LENLSFLLFLNMSYNHFE 559 (566)
Q Consensus 542 l~~l~~L~~L~l~~n~~~ 559 (566)
+...+.+..+...++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccchHHHhccCcchhc
Confidence 455556666666666554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.7e-09 Score=95.79 Aligned_cols=158 Identities=19% Similarity=0.280 Sum_probs=93.9
Q ss_pred CCcEEEcccccccc-cCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCc-cCCcCCCChhhhhhccCCC
Q 046712 227 NLRYFSISGNNLTG-SLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN-LGTGTTNDLDFITLLTNCT 304 (566)
Q Consensus 227 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~ 304 (566)
.|+.++++...++. .....+++|.+|+.+.+.++++.+.+...+..-.+|++++++.+. ++.. .....+.+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-----~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-----ALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-----HHHHHHHhhh
Confidence 47777777776653 233456778888888888888877777777777888888888763 2221 1224467788
Q ss_pred CCCEEEccCCeee-eecchhHhhhccCCcEEEccCCCCC---CCcchhhhccCCCCeecccCCcc-cccccccccCCCCC
Q 046712 305 KLEVLDLHSNRFG-GVLPFSLANLSTTMTEIAIGSNQIS---DTIPDVIANLVNLNALGVESNQL-AGTIPLAIGELKSI 379 (566)
Q Consensus 305 ~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L 379 (566)
.|..|+++.|... ........+..++++.|+++++.-. ..+....+.+|+|.+||+++|.. +......|..++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 8888888887554 2233344455566777777665321 11222234566666666666533 21112233455555
Q ss_pred CEEEccCCcc
Q 046712 380 QILFLNENFL 389 (566)
Q Consensus 380 ~~L~l~~n~~ 389 (566)
+++.++.|..
T Consensus 341 ~~lSlsRCY~ 350 (419)
T KOG2120|consen 341 QHLSLSRCYD 350 (419)
T ss_pred eeeehhhhcC
Confidence 6666655553
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=9.5e-10 Score=97.32 Aligned_cols=183 Identities=20% Similarity=0.184 Sum_probs=98.5
Q ss_pred cCCcEEEccCCCCCCC-cchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCc-ccc-cCCccccCCCCCCe
Q 046712 329 TTMTEIAIGSNQISDT-IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF-LRG-TIPSSLGNLTLLTQ 405 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~~~~L~~ 405 (566)
+.++.+++++..++.. ....+..|.+|+.|.+.++++.+.....+++..+|+.++++.|. ++. .....+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3567777777666521 33345667777777777777766555566666777777777654 221 11224556667777
Q ss_pred EeccCccccccCCCCCc--CCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcc
Q 046712 406 LILEVNNLQGKIPPSNG--NCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS 483 (566)
Q Consensus 406 L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 483 (566)
|+++-|.+......... --+.|+.|+++++.-. +..+.+. .--..+|+|.+||+|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------------------l~~sh~~----tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------------------LQKSHLS----TLVRRCPNLVHLDLSD 322 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------------------hhhhHHH----HHHHhCCceeeecccc
Confidence 77766665432211110 1234455555444311 0000110 1113667777777777
Q ss_pred ccc-cccCCccccCCCCCcEEeCCCCcccccCCcC---CcCCCCCCEEeCCCCccc
Q 046712 484 NMF-SGEIPTTLGGCTSLEYLGMQDNSFTISIPST---LSSLKSITELDLSRNNLS 535 (566)
Q Consensus 484 ~~l-~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~l~~n~~~ 535 (566)
|.. +......|-+++.|++|.++.|... +|+. +...|+|.+|++-||--.
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 643 2222234556677777777777532 4443 344577777777776443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=1.2e-09 Score=108.13 Aligned_cols=126 Identities=30% Similarity=0.402 Sum_probs=96.4
Q ss_pred CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCc-cccCCCCCcEE
Q 046712 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPT-TLGGCTSLEYL 503 (566)
Q Consensus 425 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~-~~~~~~~L~~L 503 (566)
-.|...+++.|.+. .+...+ ++.+.++.|+|++|++.... .+..++.|++|||++|.+. .+|. ...+|. |+.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heee
Confidence 35667777888876 233333 34444599999999998554 6788999999999999998 4443 344566 9999
Q ss_pred eCCCCcccccCCcCCcCCCCCCEEeCCCCccccc-cCccccccccCceeecccCcC
Q 046712 504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH-IPQYLENLSFLLFLNMSYNHF 558 (566)
Q Consensus 504 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~ 558 (566)
.|++|.++. ..++.++.+|+.||+++|-+.+. -.+-+..+.+|.+|.|.||++
T Consensus 238 ~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999999883 36789999999999999987642 224467788999999999954
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=6.3e-08 Score=86.03 Aligned_cols=228 Identities=16% Similarity=0.144 Sum_probs=116.6
Q ss_pred CCCEEeCCCCcCCCcCcc-ccc-cCCCCcEEEcCCCcCCC--CcchhccCCCCCCEEecccccCCCCCCccccCCCCCCE
Q 046712 83 RLQNLTLTNNYFLGKILT-DLS-HCSNLMKFEASNNKLEG--EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE 158 (566)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~-~~~-~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 158 (566)
-++.|.+.++.+...... .|+ .++.++.+|+.+|++++ .+...+.++|.|++|+++.|.+...+...-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 444566666655432221 132 36777778888877764 33444567788888888877766332222235567777
Q ss_pred EEccCCcCccc-CCcccccCCcccEeecccccceec---CCccc-CcccCceEecccccccccC-CCCCCCCCCCCcEEE
Q 046712 159 IDVRGNRLGGR-IPSTISHVRNLISFNVAYNQFSGM---IPPIY-NISSLQYIFIHTNRFHGSV-PLDNGVNLPNLRYFS 232 (566)
Q Consensus 159 L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~---~~~l~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~ 232 (566)
|-+.+..+... ....+..+|.++.|.++.|.+... ..... .-+.+.+++.-+|....-. .-....-+|++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 77777666422 223345667777777776633211 11111 1123344444333221000 000111356677666
Q ss_pred ccccccccc-CcccccccCCCCeeeccccccccccc-ccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEE
Q 046712 233 ISGNNLTGS-LQDSLSNATNLQGLEINRNLFSGKVS-INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLD 310 (566)
Q Consensus 233 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 310 (566)
+..|.++.. ........|.+..|++..+.+..... .++.+++.|..|.+..+++.+.......-.-.++.+++++.|+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 666655532 22334455666667776666654432 3466677777777777766543222111112234455555543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=6.2e-08 Score=86.04 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=40.0
Q ss_pred CCCCCCEEecccccCCC--CCCccccCCCCCCEEEccCCcCcccCCccc-ccCCcccEeecccccceecC--CcccCccc
Q 046712 128 NLLMLQILNIAENHLKG--QLPASIGNLSALQEIDVRGNRLGGRIPSTI-SHVRNLISFNVAYNQFSGMI--PPIYNISS 202 (566)
Q Consensus 128 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~~~~~~~~--~~l~~~~~ 202 (566)
.+..++.+|+..|.+++ ++...+.++|.|+.|+++.|.+...+ ..+ ....+|+.|-+.+..+.... +.+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45566666666666652 22233446666666666666654221 111 23345566655555443211 13334444
Q ss_pred CceEecccc
Q 046712 203 LQYIFIHTN 211 (566)
Q Consensus 203 L~~L~l~~~ 211 (566)
+++|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555544444
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.32 E-value=1.1e-08 Score=94.95 Aligned_cols=235 Identities=19% Similarity=0.147 Sum_probs=125.6
Q ss_pred CcccCceEecccc-cccccCCCCCCCCCCCCcEEEcccc-cccccCccc-ccccCCCCeeecccccccccc--cccccCC
Q 046712 199 NISSLQYIFIHTN-RFHGSVPLDNGVNLPNLRYFSISGN-NLTGSLQDS-LSNATNLQGLEINRNLFSGKV--SINFSRL 273 (566)
Q Consensus 199 ~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~--~~~~~~~ 273 (566)
.|+.++++++..| .++..........+++|++|++++| ++++..... ..++..++.+...+|.-.+.. ...-..+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 4445555555443 2222222223336777777777777 333322222 234455555555554322111 1111344
Q ss_pred CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCee-eeecchhHhhhccCCcEEEccCCC-CCCCcch-hhh
Q 046712 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRF-GGVLPFSLANLSTTMTEIAIGSNQ-ISDTIPD-VIA 350 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~ 350 (566)
..+.++++..|...+ +.+....-..+..|++++.+++.. .+....++.....+|+.+.+..|+ ++..--. .=+
T Consensus 268 ~~i~~lnl~~c~~lT----D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLT----DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hHhhccchhhhcccc----chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 556666655553221 112223445677788888877643 333334455555678888888776 3322111 123
Q ss_pred ccCCCCeecccCCccc--ccccccccCCCCCCEEEccCCccc-cc----CCccccCCCCCCeEeccCcccc-ccCCCCCc
Q 046712 351 NLVNLNALGVESNQLA--GTIPLAIGELKSIQILFLNENFLR-GT----IPSSLGNLTLLTQLILEVNNLQ-GKIPPSNG 422 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~-~~----~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~ 422 (566)
+++.|+.+++.++... +.+...-.+|+.|+.+.+++|... +. ....-..+..|+.+.+++++.. ...-..+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 5678888888877542 123333457788888888888743 21 1122344567888888888754 23334556
Q ss_pred CCCCCcEEEccCCcc
Q 046712 423 NCQNLILLTTRKNKL 437 (566)
Q Consensus 423 ~~~~L~~L~l~~~~~ 437 (566)
.|++|+.+++.++.-
T Consensus 424 ~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 424 ICRNLERIELIDCQD 438 (483)
T ss_pred hCcccceeeeechhh
Confidence 777888877777653
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.32 E-value=2.1e-08 Score=93.29 Aligned_cols=281 Identities=18% Similarity=0.096 Sum_probs=151.0
Q ss_pred CCCCeeeccccccccc--ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCC-eeeeecchhHhh
Q 046712 250 TNLQGLEINRNLFSGK--VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSN-RFGGVLPFSLAN 326 (566)
Q Consensus 250 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~ 326 (566)
..|+.+.+.++.-... .......++++++|.+.++...+ +......-..|++|+++++..| .+++.....+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT----d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT----DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc----HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 3577888877653221 12223577888888887776222 2223344567888888888885 444444445556
Q ss_pred hccCCcEEEccCCC-CCCC-cchhhhccCCCCeecccCCccccc--ccccccCCCCCCEEEccCCcc-cccCC-ccccCC
Q 046712 327 LSTTMTEIAIGSNQ-ISDT-IPDVIANLVNLNALGVESNQLAGT--IPLAIGELKSIQILFLNENFL-RGTIP-SSLGNL 400 (566)
Q Consensus 327 ~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~-~~~~~-~~~~~~ 400 (566)
..++|+++.+++|. +.+. +....+.+..++++...+|.-.+. +...-+.+.-+..+++.+|.. ++... ..-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 66788888888875 3332 223445666677777777643211 111223445566666656542 22211 122346
Q ss_pred CCCCeEeccCcccc-ccCCCC-CcCCCCCcEEEccCCc-ceeccchhhhhhcccceEEEccCCccccc--CCcCccCCCC
Q 046712 401 TLLTQLILEVNNLQ-GKIPPS-NGNCQNLILLTTRKNK-LSGIVPRQLLRIITLSVLLDLSDNLLSGH--FPTKVGNLKN 475 (566)
Q Consensus 401 ~~L~~L~l~~~~l~-~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~~~~~~ 475 (566)
..|+.|..+++.-. ...-.. -.++++|+.+.+..|+ +++.-...+....+.++.+++..|..... ....-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 77788887776432 111111 2356777777777775 23222333444444456666666533211 1222235666
Q ss_pred CCEEeCccccccccC-----CccccCCCCCcEEeCCCCccc-ccCCcCCcCCCCCCEEeCCCCcc
Q 046712 476 LVSLDISSNMFSGEI-----PTTLGGCTSLEYLGMQDNSFT-ISIPSTLSSLKSITELDLSRNNL 534 (566)
Q Consensus 476 L~~L~ls~~~l~~~~-----~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~ 534 (566)
|+.|.++.|...... ...-..+..|+.+.+++|+.+ +...+-+..+++|+.+++.+|+-
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 777777666443111 112234556666777666533 23444555666676666666644
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=1.1e-07 Score=83.51 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=73.3
Q ss_pred cccCcccCceEecccccccccCCCCCC---CCCCCCcEEEcccccccccCcc-------------cccccCCCCeeeccc
Q 046712 196 PIYNISSLQYIFIHTNRFHGSVPLDNG---VNLPNLRYFSISGNNLTGSLQD-------------SLSNATNLQGLEINR 259 (566)
Q Consensus 196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~-------------~l~~~~~L~~L~l~~ 259 (566)
.+..|++++..+++.|.+....|.... ..-..|++|.+++|.+.-.... ..+.-|.|+.+...+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 344566666666666655443333211 2345666676666654321111 122346677777777
Q ss_pred cccccccccc----ccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhc---cCCc
Q 046712 260 NLFSGKVSIN----FSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLS---TTMT 332 (566)
Q Consensus 260 ~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~ 332 (566)
|++....... +..-..|+.+.+..|.+...+...+.+. .+..+.+|+.|++.+|-++......++... +.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~-gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFL-GLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHH-HHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 7664332211 2233567777777777665444333332 234556777777777766543333322211 2345
Q ss_pred EEEccCCCCC
Q 046712 333 EIAIGSNQIS 342 (566)
Q Consensus 333 ~L~l~~~~~~ 342 (566)
+|.+.+|-++
T Consensus 246 EL~lnDClls 255 (388)
T COG5238 246 ELRLNDCLLS 255 (388)
T ss_pred hccccchhhc
Confidence 5555555444
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=3.7e-07 Score=80.18 Aligned_cols=137 Identities=17% Similarity=0.148 Sum_probs=79.5
Q ss_pred CCCCCcEEEccCCcceeccch---hhhhhcccceEEEccCCcccccCC-----cCccCCCCCCEEeCcccccccc----C
Q 046712 423 NCQNLILLTTRKNKLSGIVPR---QLLRIITLSVLLDLSDNLLSGHFP-----TKVGNLKNLVSLDISSNMFSGE----I 490 (566)
Q Consensus 423 ~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~l~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~ls~~~l~~~----~ 490 (566)
.-|.|+++.+..|++..-... ...+....++.+.+..|.+..... ..+..+.+|+.|||.+|-++.. .
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 456677777777776532211 112222345677777776653322 2234677888888888876632 2
Q ss_pred CccccCCCCCcEEeCCCCcccccCCcC----Cc--CCCCCCEEeCCCCccccc-cC-----cc-ccccccCceeecccCc
Q 046712 491 PTTLGGCTSLEYLGMQDNSFTISIPST----LS--SLKSITELDLSRNNLSGH-IP-----QY-LENLSFLLFLNMSYNH 557 (566)
Q Consensus 491 ~~~~~~~~~L~~L~L~~n~~~~~~~~~----l~--~l~~L~~L~l~~n~~~~~-~~-----~~-l~~l~~L~~L~l~~n~ 557 (566)
...+...+.|+.|.+.+|-+....... |. ..|+|..|...+|.+.+. +. +. =.++|-|..|.+.||.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 234455566888888888666433222 21 247888888888866532 11 11 1356777777788877
Q ss_pred Cc
Q 046712 558 FE 559 (566)
Q Consensus 558 ~~ 559 (566)
+.
T Consensus 315 ~~ 316 (388)
T COG5238 315 IK 316 (388)
T ss_pred ch
Confidence 64
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=3e-08 Score=98.45 Aligned_cols=180 Identities=21% Similarity=0.263 Sum_probs=91.0
Q ss_pred CccCcCCCCCCEEecCCCcccccCCcccCCC-CCCCEEeCCCCc--CCCcCc---ccccc---CCCCcEEEcCCCcCCCC
Q 046712 51 SPFVGNLNFLRSINLPNNSFRGKIPHEVGNL-FRLQNLTLTNNY--FLGKIL---TDLSH---CSNLMKFEASNNKLEGE 121 (566)
Q Consensus 51 ~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l-~~L~~L~l~~~~--l~~~~~---~~~~~---l~~L~~L~l~~~~~~~~ 121 (566)
|-.+..++.|++|.+.+|.+... ..+..+ .+|++|.-.+.- +..... .+|.+ -..|.+.+.++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 44567788888888888877531 111111 123333322210 000000 01111 124555556666555 4
Q ss_pred cchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCc-ccccCCcccEeecccccceecCCcccCc
Q 046712 122 IPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPS-TISHVRNLISFNVAYNQFSGMIPPIYNI 200 (566)
Q Consensus 122 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~l~~~ 200 (566)
+-..+.-++.|+.|+|++|++.. . +.+..+++|++||++.|.+. .+|. ....++ |+.|++++|.+.+ ...+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-LRGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-hhhHHhh
Confidence 44455556666666666666652 2 25666666666666666665 2222 222333 6666666665542 2245556
Q ss_pred ccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712 201 SSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238 (566)
Q Consensus 201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (566)
.+|+.|++++|-+.+.-.......+..|++|++.+|.+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66666666666554333222233445566666666644
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=6.9e-06 Score=69.25 Aligned_cols=101 Identities=23% Similarity=0.138 Sum_probs=75.7
Q ss_pred eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccccc-CCcCCcCCCCCCEEeCCC
Q 046712 453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTIS-IPSTLSSLKSITELDLSR 531 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~ 531 (566)
..+|+++|.+.. ...|..++.|.+|.+++|+++.+.|..-..+++|++|.+.+|.+... ..+.+..||.|+.|.+-+
T Consensus 45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 567777777752 24577888999999999999855554444678899999999987742 235678889999999999
Q ss_pred Ccccccc---CccccccccCceeeccc
Q 046712 532 NNLSGHI---PQYLENLSFLLFLNMSY 555 (566)
Q Consensus 532 n~~~~~~---~~~l~~l~~L~~L~l~~ 555 (566)
|++...- .-.+..+|+|+.||..+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 9887432 23667889999988764
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=1.9e-05 Score=75.85 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=81.4
Q ss_pred hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcc-ccccCCCCCcCCCCC
Q 046712 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNN-LQGKIPPSNGNCQNL 427 (566)
Q Consensus 349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L 427 (566)
+..+.++++|++++|.++ .+|. + ..+|++|.+++|.....+|..+ .++|+.|++++|. +. .+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------ccc
Confidence 555788999999999777 3442 2 2469999998876544555544 2588888888883 43 333 457
Q ss_pred cEEEccCCcceeccchhhhhhcccceEEEccCCc-ccc-cCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeC
Q 046712 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNL-LSG-HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGM 505 (566)
Q Consensus 428 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L 505 (566)
+.|++..+... .+..+++.++.|.+.+++ ... ..+..+ -++|+.|++++|... ..|..+. .+|+.|++
T Consensus 115 e~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 115 RSLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ceEEeCCCCCc-----ccccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 77777655432 123344445666664322 110 111111 156778888777755 4444443 57777777
Q ss_pred CCC
Q 046712 506 QDN 508 (566)
Q Consensus 506 ~~n 508 (566)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 665
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=2.3e-05 Score=75.25 Aligned_cols=136 Identities=16% Similarity=0.121 Sum_probs=80.2
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
..++.|++++|.+.. +|. -.++|++|.+++|.-....|..++ ++|++|++++|.....+| ++|+.|++
T Consensus 52 ~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe~L~L 119 (426)
T PRK15386 52 RASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVRSLEI 119 (426)
T ss_pred cCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccceEEe
Confidence 678888888887763 342 234688888888654335555443 578888888884222333 45777777
Q ss_pred cCccccccCCCCCcCC-CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccc
Q 046712 409 EVNNLQGKIPPSNGNC-QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNM 485 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~ 485 (566)
..+.... +..+ ++|+.|.+.+++.... ...-..+|+.++.|++++|... ..|..+. .+|+.|+++.+.
T Consensus 120 ~~n~~~~-----L~~LPssLk~L~I~~~n~~~~-~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 120 KGSATDS-----IKNVPNGLTSLSINSYNPENQ-ARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCCCcc-----cccCcchHhheeccccccccc-cccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 6554321 1122 3677777754331100 0000135566788888888765 3444444 578888887763
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=2.7e-06 Score=88.76 Aligned_cols=87 Identities=28% Similarity=0.285 Sum_probs=40.7
Q ss_pred cCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc-cCCcCCcCCCCCCEEeCCCCcccccc------Ccccc
Q 046712 471 GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI-SIPSTLSSLKSITELDLSRNNLSGHI------PQYLE 543 (566)
Q Consensus 471 ~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~------~~~l~ 543 (566)
..+|+|..||||++++... ..++.+++|++|.+++=.+.. .....+.+|++|+.||+|.-+..... -++-.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 3455555555555555421 345555555555555544432 12223444555555555544332110 01222
Q ss_pred ccccCceeecccCcCc
Q 046712 544 NLSFLLFLNMSYNHFE 559 (566)
Q Consensus 544 ~l~~L~~L~l~~n~~~ 559 (566)
.+|.|+.||.|++.++
T Consensus 248 ~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDIN 263 (699)
T ss_pred cCccccEEecCCcchh
Confidence 3455555555555444
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=7.9e-06 Score=51.71 Aligned_cols=36 Identities=39% Similarity=0.634 Sum_probs=19.1
Q ss_pred CCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712 499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 499 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666655 33444555666666666666555
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=8.8e-06 Score=51.50 Aligned_cols=36 Identities=33% Similarity=0.606 Sum_probs=19.4
Q ss_pred CCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 475 ~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~ 511 (566)
+|++|++++|+++ .++..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666655 34444555666666666666555
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=7.4e-07 Score=69.93 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=55.3
Q ss_pred CCEEecCCCcccccCCcc---cCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEe
Q 046712 60 LRSINLPNNSFRGKIPHE---VGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILN 136 (566)
Q Consensus 60 L~~L~ls~~~l~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 136 (566)
+..+++++|++. .++++ +...+.|+..++++|.+....+..-...+..+.|++++|.++ .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 344555555554 23332 233344555566666554333333334455566666666665 4455566666666666
Q ss_pred cccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712 137 IAENHLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 137 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 167 (566)
++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 6666655 44555555556666666555544
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.82 E-value=5.7e-05 Score=61.94 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=63.4
Q ss_pred cCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCC
Q 046712 50 LSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNL 129 (566)
Q Consensus 50 ~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 129 (566)
...+|..+++|+.+.+.. .+......+|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 345678888888888875 455455667888888888888775 5556666778887888888865 3332344556677
Q ss_pred CCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCccc
Q 046712 130 LMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI 181 (566)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 181 (566)
++|+.+++..+ +...-...+.++ +|+.+.+..+ +.......|.++++|+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG------
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccCC
Confidence 88888888654 432344556666 7777777653 2324445566665553
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=3.6e-05 Score=64.99 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=26.6
Q ss_pred CCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccce
Q 046712 131 MLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191 (566)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (566)
....+|+++|.+. -...+..++.|..|.+.+|+|+.+.|.--..+++|+.|.+.+|.+.
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 3444444444443 1233444445555555555554333322233455555555555443
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=2e-06 Score=67.62 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=22.5
Q ss_pred CCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcc
Q 046712 475 NLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNL 534 (566)
Q Consensus 475 ~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 534 (566)
.++.|++++|.+. .+|+.+..++.|+.|+++.|.+. ..|+-+..+.+|-.|+..+|.+
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 3444444444443 33333444444444444444433 2233333333444444443333
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=6.9e-06 Score=85.80 Aligned_cols=136 Identities=22% Similarity=0.273 Sum_probs=72.3
Q ss_pred CcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccc-cccccccCCCCCc
Q 046712 199 NISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSG-KVSINFSRLQNLS 277 (566)
Q Consensus 199 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~ 277 (566)
.+|.|++|.+.+-.+...-......++|+|..||+++++++.. ..++++++|+.|.+.+-.+.. ..-..+..+++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 3455555555554433221223333667777777777766643 446666777777766655543 1122355677777
Q ss_pred EEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEc
Q 046712 278 RLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAI 336 (566)
Q Consensus 278 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 336 (566)
.||++.............+.+.-..+|+|+.||.++..+.+.....+...-++|+.+..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 77777655443331111222334456777777777776664444333333344444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.58 E-value=0.00028 Score=57.80 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=13.2
Q ss_pred CccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCC
Q 046712 469 KVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD 507 (566)
Q Consensus 469 ~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~ 507 (566)
.|..+++|+.+++..+ +.......|.++ .|+.+.+.+
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 3344445555555433 222333334444 555555443
No 65
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.37 E-value=6.8e-05 Score=47.33 Aligned_cols=30 Identities=57% Similarity=1.132 Sum_probs=22.7
Q ss_pred CcccCC-CCCCCCCCCcCC--CCCCcccccccC
Q 046712 1 MKSQLQ-DPLGVTSSWNNS--INLCQWTGVTCG 30 (566)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~ 30 (566)
||+++. ||...+.+|+.. .+||.|.||+|.
T Consensus 11 ~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 11 FKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 678888 788999999998 799999999994
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00037 Score=61.72 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=64.8
Q ss_pred eEEEccCCcccccCCcCccCCCCCCEEeCccc--cccccCCccccCCCCCcEEeCCCCcccc-cCCcCCcCCCCCCEEeC
Q 046712 453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSN--MFSGEIPTTLGGCTSLEYLGMQDNSFTI-SIPSTLSSLKSITELDL 529 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~--~l~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l 529 (566)
+.+.+.++.++.. ..|..+++|+.|.++.| ++....+.....+++|++|++++|++.. .....+..+++|..|++
T Consensus 46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 5555666666532 34667888888999888 5444444444566889999999888773 22345566778888888
Q ss_pred CCCccccccC---ccccccccCceeec
Q 046712 530 SRNNLSGHIP---QYLENLSFLLFLNM 553 (566)
Q Consensus 530 ~~n~~~~~~~---~~l~~l~~L~~L~l 553 (566)
.+|..+..-- ..|.-+++|..|+-
T Consensus 124 ~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 124 FNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred ccCCccccccHHHHHHHHhhhhccccc
Confidence 8887775211 24555677766654
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.0003 Score=62.32 Aligned_cols=111 Identities=23% Similarity=0.206 Sum_probs=55.3
Q ss_pred CCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCC--cccccCCcCccCCCCCCEEeCcccccccc-CCccccC
Q 046712 420 SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN--LLSGHFPTKVGNLKNLVSLDISSNMFSGE-IPTTLGG 496 (566)
Q Consensus 420 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~--~~~~~~~~~~~~~~~L~~L~ls~~~l~~~-~~~~~~~ 496 (566)
....+..|..+++.++.++.. ..+..++.+ +.|.++.| ++.+....-...+|+|++|++++|++... ....+..
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~L-kkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKL-KKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchh-hhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 334445555555555555421 223333333 66677766 44433333333457777777777766520 1122444
Q ss_pred CCCCcEEeCCCCcccccC---CcCCcCCCCCCEEeCCCCc
Q 046712 497 CTSLEYLGMQDNSFTISI---PSTLSSLKSITELDLSRNN 533 (566)
Q Consensus 497 ~~~L~~L~L~~n~~~~~~---~~~l~~l~~L~~L~l~~n~ 533 (566)
+.+|..|++.+|..+..- ...|.-+++|..||-....
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 556666777766555311 1123445666666654443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.94 E-value=0.00015 Score=74.82 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=20.2
Q ss_pred CCEEeCccccccc-cCCccccC-CCCCcEEeCCCCccc
Q 046712 476 LVSLDISSNMFSG-EIPTTLGG-CTSLEYLGMQDNSFT 511 (566)
Q Consensus 476 L~~L~ls~~~l~~-~~~~~~~~-~~~L~~L~L~~n~~~ 511 (566)
++.|+++.+.... ........ +..++.+++.++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 7777777775431 11112222 667777777777543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.69 E-value=0.00012 Score=75.45 Aligned_cols=221 Identities=17% Similarity=0.083 Sum_probs=111.0
Q ss_pred ccCCcEEEccCCCCCCC--cchhhhccCCCCeecccCC-ccccc----ccccccCCCCCCEEEccCCc-ccccCCcccc-
Q 046712 328 STTMTEIAIGSNQISDT--IPDVIANLVNLNALGVESN-QLAGT----IPLAIGELKSIQILFLNENF-LRGTIPSSLG- 398 (566)
Q Consensus 328 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~- 398 (566)
.+.++.+.+.++.-... .......++.|+.|+++++ ..... .......+++|+.++++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46777777777743322 2344556778888888763 11101 11233456777777777777 4433333332
Q ss_pred CCCCCCeEeccCcc-ccccCC-CCCcCCCCCcEEEccCCcceec-cchhhhhhcccceEEEccCCcccccCCcCccCCCC
Q 046712 399 NLTLLTQLILEVNN-LQGKIP-PSNGNCQNLILLTTRKNKLSGI-VPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKN 475 (566)
Q Consensus 399 ~~~~L~~L~l~~~~-l~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 475 (566)
.+++|+.|.+.+|. ++...- .....++.|++|++++|..... .........+.++.+.+.. ...++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~----------~~~c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS----------LNGCPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh----------cCCCcc
Confidence 26777777776666 342222 2223567777777777654311 1111111111112221111 112444
Q ss_pred CCEEeCcccccc---ccCCccccCCCCCcEEeCCCCcccccC-CcCCcCCCCC--------------CEEeCCCCccccc
Q 046712 476 LVSLDISSNMFS---GEIPTTLGGCTSLEYLGMQDNSFTISI-PSTLSSLKSI--------------TELDLSRNNLSGH 537 (566)
Q Consensus 476 L~~L~ls~~~l~---~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L--------------~~L~l~~n~~~~~ 537 (566)
++.+.+.++... ......+..++.++.+.+..+...... ...+.+++.| +.|+++.|.....
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 555555544331 122234557788888888877644322 1334444444 6666666655422
Q ss_pred -cCccccc-cccCceeecccCcC
Q 046712 538 -IPQYLEN-LSFLLFLNMSYNHF 558 (566)
Q Consensus 538 -~~~~l~~-l~~L~~L~l~~n~~ 558 (566)
.-..... +..++.+++.+++.
T Consensus 417 ~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 417 KGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cchHHHhhhhhccccCCccCccc
Confidence 2222222 55566677766643
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00014 Score=64.67 Aligned_cols=81 Identities=25% Similarity=0.272 Sum_probs=38.2
Q ss_pred CCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCC
Q 046712 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305 (566)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 305 (566)
.+.++|+.++|.++++ .....++.|+.|.++-|+++...+ +..|+.|+.|++..|.+.+ ++.+..+.++|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-----ldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-----LDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-----HHHHHHHhcCch
Confidence 3444555555554432 123445555555555555543332 4455555555555554432 223344555555
Q ss_pred CCEEEccCCe
Q 046712 306 LEVLDLHSNR 315 (566)
Q Consensus 306 L~~L~l~~~~ 315 (566)
|+.|-+..|.
T Consensus 90 Lr~LWL~ENP 99 (388)
T KOG2123|consen 90 LRTLWLDENP 99 (388)
T ss_pred hhhHhhccCC
Confidence 5555554443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00024 Score=63.21 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=54.7
Q ss_pred CCCCCcEEEcccccccccCcccccccCCCCeeeccccccccccc-ccccCCCCCcEEECCCCccCCcCCCChhhhhhccC
Q 046712 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS-INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTN 302 (566)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 302 (566)
.++.|++|.|+-|.|+.. ..+..|.+|++|.+..|.+..... ..+.++|+|+.|-+..|+.......... ...+.-
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR-~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR-RKVLRV 115 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH-HHHHHH
Confidence 577778888887777643 336778888888888877765433 2357778888888877776554443222 134556
Q ss_pred CCCCCEEE
Q 046712 303 CTKLEVLD 310 (566)
Q Consensus 303 ~~~L~~L~ 310 (566)
+|+|++||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 67777664
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.40 E-value=6e-05 Score=75.39 Aligned_cols=64 Identities=30% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCCC-CCEEeCccccccccC----CccccCC-CCCcEEeCCCCccccc----CCcCCcCCCCCCEEeCCCCccc
Q 046712 472 NLKN-LVSLDISSNMFSGEI----PTTLGGC-TSLEYLGMQDNSFTIS----IPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 472 ~~~~-L~~L~ls~~~l~~~~----~~~~~~~-~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
..++ +.+|++.+|.+.+.. ...+..+ ..+++++++.|.++.. +.+.+..++.++.+.+..|.+.
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3344 555666666655331 2233333 4556666666665542 2233445556666666666554
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.002 Score=54.81 Aligned_cols=80 Identities=21% Similarity=0.199 Sum_probs=48.0
Q ss_pred eEEEccCCcccccCCcCccCCCCCCEEeCcccccccc-CCcccc-CCCCCcEEeCCCC-cccccCCcCCcCCCCCCEEeC
Q 046712 453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE-IPTTLG-GCTSLEYLGMQDN-SFTISIPSTLSSLKSITELDL 529 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~-~~~~~~-~~~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l 529 (566)
+.++-+++.+..+..+.+.+++.++.|.+.+|.-.+. --+.+. -.++|++|+|++| .|++....++..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 5566677777666666666777777777776643211 001111 2467777777776 366555666666777777776
Q ss_pred CCC
Q 046712 530 SRN 532 (566)
Q Consensus 530 ~~n 532 (566)
.+=
T Consensus 184 ~~l 186 (221)
T KOG3864|consen 184 YDL 186 (221)
T ss_pred cCc
Confidence 554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.10 E-value=0.0086 Score=31.26 Aligned_cols=6 Identities=33% Similarity=0.612 Sum_probs=2.1
Q ss_pred EeCCCC
Q 046712 503 LGMQDN 508 (566)
Q Consensus 503 L~L~~n 508 (566)
|+|++|
T Consensus 5 Ldls~n 10 (22)
T PF00560_consen 5 LDLSGN 10 (22)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.95 E-value=0.01 Score=30.99 Aligned_cols=21 Identities=48% Similarity=0.692 Sum_probs=13.2
Q ss_pred CCCEEeCCCCccccccCccccc
Q 046712 523 SITELDLSRNNLSGHIPQYLEN 544 (566)
Q Consensus 523 ~L~~L~l~~n~~~~~~~~~l~~ 544 (566)
+|++||+++|+++ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777776 55555543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.0064 Score=51.88 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred CCEEecCCCcccccCCcccCCCCCCCEEeCCCCcC-CCcCcccccc-CCCCcEEEcCCC-cCCCCcchhccCCCCCCEEe
Q 046712 60 LRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYF-LGKILTDLSH-CSNLMKFEASNN-KLEGEIPVKISNLLMLQILN 136 (566)
Q Consensus 60 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~-l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~ 136 (566)
++.+|-+++.|..+.-+.+.+++.++.|.+.+|.- .+...+.+++ .++|+.|++++| +|++.....+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45555555555544444555555666666655532 1111122222 355666666654 34444444455555555555
Q ss_pred ccc
Q 046712 137 IAE 139 (566)
Q Consensus 137 l~~ 139 (566)
+++
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.27 E-value=0.00051 Score=68.86 Aligned_cols=261 Identities=21% Similarity=0.185 Sum_probs=143.0
Q ss_pred hhccCCCCCCEEEccCCeeeeecchhHhhh----ccCCcEEEccCCCCCCC----cchhhhccCCCCeecccCCccccc-
Q 046712 298 TLLTNCTKLEVLDLHSNRFGGVLPFSLANL----STTMTEIAIGSNQISDT----IPDVIANLVNLNALGVESNQLAGT- 368 (566)
Q Consensus 298 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~- 368 (566)
..+...+.|+.|++++|.+.+.....+... ...++.|.+..|.+++. +...+...+.++.++++.|.+...
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 344555566666666665553322222221 13455566666766543 344566688899999999987421
Q ss_pred ---cccccc----CCCCCCEEEccCCccccc----CCccccCCCC-CCeEeccCcccccc----CCCCCcCC-CCCcEEE
Q 046712 369 ---IPLAIG----ELKSIQILFLNENFLRGT----IPSSLGNLTL-LTQLILEVNNLQGK----IPPSNGNC-QNLILLT 431 (566)
Q Consensus 369 ---~~~~~~----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~-L~~L~l~~~~l~~~----~~~~~~~~-~~L~~L~ 431 (566)
.+..+. ...++++|.+++|.++.. ....+...++ +.++++..|.+... ....+..+ +.++.++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 222333 366888899999887632 2234444555 77788888887633 22334445 6778888
Q ss_pred ccCCcceeccchhhhhhc---ccceEEEccCCcccccCC----cCccCCCCCCEEeCccccccccCCc------------
Q 046712 432 TRKNKLSGIVPRQLLRII---TLSVLLDLSDNLLSGHFP----TKVGNLKNLVSLDISSNMFSGEIPT------------ 492 (566)
Q Consensus 432 l~~~~~~~~~~~~~~~~~---~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~l~~~~~~------------ 492 (566)
+..|.+.+.....+.+.. +.++.+.++++.+..... +.......+..+-+.++......+.
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 348 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQL 348 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhh
Confidence 888888765544443322 234677777777764322 2223344556666665543322110
Q ss_pred ---------------------cccCC-CCCcEEeCCCCcccc----cCCcCCcCCCCCCEEeCCCCccccccCc-----c
Q 046712 493 ---------------------TLGGC-TSLEYLGMQDNSFTI----SIPSTLSSLKSITELDLSRNNLSGHIPQ-----Y 541 (566)
Q Consensus 493 ---------------------~~~~~-~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~-----~ 541 (566)
..... +.+..+++..+.+.+ .+...+...+.++.++++.|......+. .
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~ 428 (478)
T KOG4308|consen 349 LSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQL 428 (478)
T ss_pred hHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhh
Confidence 00000 224444444443332 2334445567777777777755433222 1
Q ss_pred ccccccCceeecccCcCc
Q 046712 542 LENLSFLLFLNMSYNHFE 559 (566)
Q Consensus 542 l~~l~~L~~L~l~~n~~~ 559 (566)
-.+. .++.+.++.|+++
T Consensus 429 ~~~~-~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 429 SRNG-SLKALRLSRNPIT 445 (478)
T ss_pred hhcc-cchhhhhccChhh
Confidence 2233 6777777777655
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.47 E-value=0.0011 Score=57.42 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=51.0
Q ss_pred cCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCC
Q 046712 78 VGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQ 157 (566)
Q Consensus 78 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 157 (566)
+..+...+.||++.|++.. .-..|.-++.|..++++.|++. ..|..++....++.+++..|... ..|.++...++++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 3444455555555555432 2233444555666666666655 55666666666666666666665 5666666777777
Q ss_pred EEEccCCcCc
Q 046712 158 EIDVRGNRLG 167 (566)
Q Consensus 158 ~L~l~~~~i~ 167 (566)
++++.++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7776666543
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.10 E-value=0.092 Score=25.31 Aligned_cols=12 Identities=50% Similarity=0.722 Sum_probs=4.1
Q ss_pred CCCEEeCccccc
Q 046712 475 NLVSLDISSNMF 486 (566)
Q Consensus 475 ~L~~L~ls~~~l 486 (566)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.68 E-value=0.0035 Score=54.49 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=66.2
Q ss_pred cCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccccc
Q 046712 468 TKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547 (566)
Q Consensus 468 ~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 547 (566)
..+..+...+.||++.|++- -.-..|+-++.|..|+++.|.+. ..|+.+.....++.+++..|... ..|.++...++
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34556777788888888765 44455666777888888888777 57777877788888888777776 66777888888
Q ss_pred CceeecccCcCc
Q 046712 548 LLFLNMSYNHFE 559 (566)
Q Consensus 548 L~~L~l~~n~~~ 559 (566)
++.+++.+|++.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888877654
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.87 E-value=0.13 Score=27.33 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=4.5
Q ss_pred CCCEEeCCCCccc
Q 046712 523 SITELDLSRNNLS 535 (566)
Q Consensus 523 ~L~~L~l~~n~~~ 535 (566)
+|++|+|++|++.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444433
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.13 E-value=0.49 Score=25.68 Aligned_cols=14 Identities=57% Similarity=0.771 Sum_probs=7.6
Q ss_pred CCCCEEeCCCCccc
Q 046712 522 KSITELDLSRNNLS 535 (566)
Q Consensus 522 ~~L~~L~l~~n~~~ 535 (566)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.13 E-value=0.49 Score=25.68 Aligned_cols=14 Identities=57% Similarity=0.771 Sum_probs=7.6
Q ss_pred CCCCEEeCCCCccc
Q 046712 522 KSITELDLSRNNLS 535 (566)
Q Consensus 522 ~~L~~L~l~~n~~~ 535 (566)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.74 E-value=0.69 Score=25.07 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=8.0
Q ss_pred CCCCEEecCCCccc
Q 046712 58 NFLRSINLPNNSFR 71 (566)
Q Consensus 58 ~~L~~L~ls~~~l~ 71 (566)
++|++|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555666655555
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.74 E-value=0.69 Score=25.07 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=8.0
Q ss_pred CCCCEEecCCCccc
Q 046712 58 NFLRSINLPNNSFR 71 (566)
Q Consensus 58 ~~L~~L~ls~~~l~ 71 (566)
++|++|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555666655555
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.36 E-value=1.8 Score=24.05 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=7.5
Q ss_pred cCceeecccCcCc
Q 046712 547 FLLFLNMSYNHFE 559 (566)
Q Consensus 547 ~L~~L~l~~n~~~ 559 (566)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.38 E-value=2.1 Score=23.17 Aligned_cols=11 Identities=45% Similarity=0.564 Sum_probs=5.3
Q ss_pred CCCCEEeCCCC
Q 046712 522 KSITELDLSRN 532 (566)
Q Consensus 522 ~~L~~L~l~~n 532 (566)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44445555444
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.74 E-value=3.7 Score=22.31 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=7.2
Q ss_pred CCcEEeCCCCccc
Q 046712 499 SLEYLGMQDNSFT 511 (566)
Q Consensus 499 ~L~~L~L~~n~~~ 511 (566)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.64 E-value=20 Score=35.61 Aligned_cols=300 Identities=17% Similarity=0.075 Sum_probs=132.1
Q ss_pred CCCCeeecccccccccccc------cccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchh
Q 046712 250 TNLQGLEINRNLFSGKVSI------NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFS 323 (566)
Q Consensus 250 ~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 323 (566)
..++.+++.-|.+...... ....-+.+++++++.+.+....+..+. . ..--+.++.|..+......
T Consensus 135 ~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~------~--p~~pl~lr~c~lsskfis~ 206 (553)
T KOG4242|consen 135 APLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLP------Q--PGNPLSLRVCELSSKFISK 206 (553)
T ss_pred ccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCcccc------C--CCCccchhhhhhhhhHHHH
Confidence 3455666655544321111 123346678888888877665442221 1 1111555555544222111
Q ss_pred H--hhhccCCcEEEccCCCCCCCcchhhhc---cCCCCeecccCCccc---ccccccccCCCCCCEEEccCCcccc----
Q 046712 324 L--ANLSTTMTEIAIGSNQISDTIPDVIAN---LVNLNALGVESNQLA---GTIPLAIGELKSIQILFLNENFLRG---- 391 (566)
Q Consensus 324 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~---l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~---- 391 (566)
+ ......+.+++++.+.....+|..... --.+++++.++..+. ...+...+.-+.++..+++.|....
T Consensus 207 l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~ 286 (553)
T KOG4242|consen 207 LLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGE 286 (553)
T ss_pred hhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccc
Confidence 1 111246677777777655555543321 234566666665442 0112233344566666666655421
Q ss_pred cC----CccccCCCCCCeEeccCccccccCCCCCc------CCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCc
Q 046712 392 TI----PSSLGNLTLLTQLILEVNNLQGKIPPSNG------NCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNL 461 (566)
Q Consensus 392 ~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 461 (566)
+. ...|..-+++ .|++..+....+-+..+- .-.-=-.++++.|...+.-.........-++.+..+++.
T Consensus 287 Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnn 365 (553)
T KOG4242|consen 287 EGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNN 365 (553)
T ss_pred ccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccc
Confidence 11 1223333455 555555543321110000 000001233333333211110000111113666666666
Q ss_pred ccccCCc--CccCCCCCCEEeCccccc---ccc--CCcccc----CCCCCcEEeCCCCcccccCC---cCCcCCCCCCEE
Q 046712 462 LSGHFPT--KVGNLKNLVSLDISSNMF---SGE--IPTTLG----GCTSLEYLGMQDNSFTISIP---STLSSLKSITEL 527 (566)
Q Consensus 462 ~~~~~~~--~~~~~~~L~~L~ls~~~l---~~~--~~~~~~----~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L 527 (566)
+.+.... ....-++.+.+++.+-.- ++. ....+. ...-+..+.++.|....... ..+..-+.+..|
T Consensus 366 ldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kl 445 (553)
T KOG4242|consen 366 LDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKL 445 (553)
T ss_pred cccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccc
Confidence 5543322 223445566666654322 100 000011 12346667777776553221 223334677777
Q ss_pred eCCCCcccc----ccCccccccccCceeecccCcC
Q 046712 528 DLSRNNLSG----HIPQYLENLSFLLFLNMSYNHF 558 (566)
Q Consensus 528 ~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~ 558 (566)
++++|.... .+|..+..-..++....+.|..
T Consensus 446 disgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 446 DISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 777776653 3455555555566666655543
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.02 E-value=39 Score=33.70 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=17.2
Q ss_pred cCCcEEEccCCCCCC----CcchhhhccCCCCeecccCCcc
Q 046712 329 TTMTEIAIGSNQISD----TIPDVIANLVNLNALGVESNQL 365 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~ 365 (566)
+.+.+|+++++.-.. .+|...+....++.+..+.|..
T Consensus 440 qtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 440 QTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 355666666654332 1333334344455555544433
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.21 E-value=5.5 Score=21.71 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=7.4
Q ss_pred CCCCEEecCCCccc
Q 046712 58 NFLRSINLPNNSFR 71 (566)
Q Consensus 58 ~~L~~L~ls~~~l~ 71 (566)
++|++|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.30 E-value=8.4 Score=38.88 Aligned_cols=67 Identities=25% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCCCCcEEEcccccccccC--cccccccCCCCeeecccc--cccccccccccCCCCCcEEECCCCccCCcC
Q 046712 224 NLPNLRYFSISGNNLTGSL--QDSLSNATNLQGLEINRN--LFSGKVSINFSRLQNLSRLNLGENNLGTGT 290 (566)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 290 (566)
+.+.+..+++++|++.... ...-+..|+|..|+|++| .+.......--+...|++|-+.+|++.+.-
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 4566777777777655321 111234567777777777 332221111123355677777777766543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.36 E-value=11 Score=38.08 Aligned_cols=66 Identities=26% Similarity=0.219 Sum_probs=44.4
Q ss_pred cCCCCCCEEeCccccccccCC--ccccCCCCCcEEeCCCCcccccCCcCCcC--CCCCCEEeCCCCcccc
Q 046712 471 GNLKNLVSLDISSNMFSGEIP--TTLGGCTSLEYLGMQDNSFTISIPSTLSS--LKSITELDLSRNNLSG 536 (566)
Q Consensus 471 ~~~~~L~~L~ls~~~l~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~~~l~~--l~~L~~L~l~~n~~~~ 536 (566)
.+.+.+..+++++|++..... ..-+.-|+|..|+|++|........++.. ...|++|-+.||++.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 367889999999998863211 12234589999999999322122233333 3678999999999874
Done!