Query 046712
Match_columns 566
No_of_seqs 273 out of 3361
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 05:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-68 4.5E-73 576.1 48.8 558 1-565 20-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-58 7.6E-63 496.6 43.0 513 34-557 126-738 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.5E-55 1.9E-59 466.6 46.4 520 34-561 25-624 (680)
4 3t6q_A CD180 antigen; protein- 100.0 4.3E-55 1.5E-59 461.3 40.9 515 34-562 33-563 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-53 5.6E-58 449.2 37.8 512 34-563 32-562 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-52 1.9E-56 443.3 47.9 521 38-563 8-601 (680)
7 3t6q_A CD180 antigen; protein- 100.0 1.8E-51 6E-56 433.7 40.6 510 38-564 16-541 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 8.2E-50 2.8E-54 421.0 38.0 505 37-564 14-538 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-50 1.9E-54 435.6 34.3 517 22-561 14-562 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 1.5E-48 5.2E-53 408.7 35.9 491 34-564 28-536 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-48 1.6E-52 420.6 39.7 505 37-564 7-544 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-47 7.1E-52 397.9 35.0 491 22-539 4-514 (549)
13 4ecn_A Leucine-rich repeat pro 100.0 2.6E-47 9.1E-52 406.7 31.5 475 1-558 277-863 (876)
14 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-45 5.2E-50 391.5 38.2 539 5-559 6-580 (635)
15 4eco_A Uncharacterized protein 100.0 1.6E-46 5.6E-51 395.0 29.1 443 12-467 57-604 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5.8E-45 2E-49 379.5 32.3 469 34-515 26-514 (549)
17 2z63_A TOLL-like receptor 4, v 100.0 4.8E-44 1.6E-48 374.6 34.8 466 34-539 52-535 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-43 4.3E-48 366.6 30.1 455 37-560 3-482 (520)
19 4eco_A Uncharacterized protein 100.0 2.8E-42 9.4E-47 362.9 27.9 367 58-436 81-547 (636)
20 4g8a_A TOLL-like receptor 4; l 100.0 4.3E-40 1.5E-44 349.5 37.1 510 39-565 36-561 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-41 6E-46 350.5 24.5 438 34-537 21-483 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.1E-41 2.1E-45 349.2 27.8 460 37-561 34-512 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-40 5.7E-45 345.9 26.0 440 34-537 52-512 (562)
24 4ecn_A Leucine-rich repeat pro 100.0 8.2E-40 2.8E-44 349.1 25.5 321 224-561 489-842 (876)
25 3v47_A TOLL-like receptor 5B a 100.0 1.9E-37 6.3E-42 315.1 27.0 369 34-442 30-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 7.6E-37 2.6E-41 310.6 30.5 372 133-563 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2.3E-37 7.9E-42 311.1 19.9 407 34-564 11-434 (454)
28 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-36 6.6E-41 290.2 17.2 280 1-285 14-302 (313)
29 1jl5_A Outer protein YOPM; leu 100.0 2.9E-35 9.9E-40 295.9 25.9 389 105-564 10-416 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-34 1.2E-38 288.1 29.7 214 49-317 33-246 (457)
31 1o6v_A Internalin A; bacterial 100.0 1.9E-33 6.3E-38 285.6 32.4 344 34-439 46-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 2.9E-33 9.8E-38 284.2 32.2 348 55-465 43-390 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 1.2E-33 4.2E-38 288.4 25.0 321 204-536 14-334 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 5.2E-33 1.8E-37 283.8 27.6 319 182-511 15-333 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 6.1E-33 2.1E-37 275.4 25.6 351 12-440 3-354 (390)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-32 5.9E-37 275.9 27.3 343 34-443 42-392 (457)
37 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.7E-36 261.5 27.0 304 225-559 43-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 1.1E-31 3.8E-36 280.7 27.4 198 7-214 4-205 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 2.2E-31 7.5E-36 264.2 24.9 309 200-535 44-352 (390)
40 4fmz_A Internalin; leucine ric 100.0 6.5E-31 2.2E-35 256.7 27.8 306 55-414 41-346 (347)
41 1ogq_A PGIP-2, polygalacturona 100.0 3.5E-31 1.2E-35 253.6 19.5 258 304-566 50-312 (313)
42 3oja_B Anopheles plasmodium-re 100.0 1.5E-30 5E-35 272.3 24.8 308 226-559 51-358 (597)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-33 5.1E-38 286.9 -4.8 289 130-440 3-328 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 9E-33 3.1E-37 281.1 -2.5 382 177-560 2-441 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-28 4.3E-33 238.6 26.0 293 59-388 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.5E-28 8.6E-33 236.4 27.1 289 227-557 32-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 3.7E-28 1.3E-32 235.2 27.6 275 58-388 52-330 (330)
48 4fcg_A Uncharacterized protein 100.0 3.3E-30 1.1E-34 248.2 12.9 256 1-285 35-312 (328)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-28 6.2E-33 237.5 24.7 288 227-557 34-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 3.8E-31 1.3E-35 278.0 -3.3 452 20-508 40-548 (592)
51 2z66_A Variable lymphocyte rec 99.9 7.8E-27 2.7E-31 223.4 21.6 275 277-563 10-291 (306)
52 3ogk_B Coronatine-insensitive 99.9 7E-30 2.4E-34 268.3 -1.3 398 34-439 73-527 (592)
53 2z80_A TOLL-like receptor 2, v 99.9 8.1E-27 2.8E-31 227.9 18.2 285 14-320 22-317 (353)
54 4fcg_A Uncharacterized protein 99.9 1.9E-26 6.3E-31 222.1 19.5 225 329-559 81-314 (328)
55 2z66_A Variable lymphocyte rec 99.9 3.5E-26 1.2E-30 218.9 20.8 280 253-544 10-296 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 3.6E-27 1.2E-31 230.4 14.1 280 248-539 29-318 (353)
57 3zyi_A Leucine-rich repeat-con 99.9 3.9E-26 1.3E-30 230.8 22.2 229 329-559 75-303 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 5.3E-26 1.8E-30 229.0 22.6 227 330-558 65-291 (440)
59 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-27 5.5E-32 228.9 9.9 248 304-566 34-283 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-25 4.9E-30 212.2 21.2 252 307-564 14-266 (285)
61 1ozn_A Reticulon 4 receptor; N 99.9 5.7E-26 2E-30 214.9 17.5 269 277-557 14-285 (285)
62 2p1m_B Transport inhibitor res 99.9 2.3E-28 7.9E-33 257.0 -2.1 106 85-191 46-169 (594)
63 3zyi_A Leucine-rich repeat-con 99.9 1.1E-24 3.7E-29 220.2 23.5 228 58-317 75-303 (452)
64 3zyj_A Leucine-rich repeat-con 99.9 1.7E-24 5.9E-29 217.9 24.3 246 37-317 46-292 (440)
65 1wwl_A Monocyte differentiatio 99.9 6E-27 2.1E-31 224.3 5.7 204 351-561 93-311 (312)
66 2p1m_B Transport inhibitor res 99.9 8.6E-28 2.9E-32 252.6 -1.5 451 20-485 33-542 (594)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-24 3.8E-29 225.3 20.2 288 7-371 7-302 (622)
68 3oja_A Leucine-rich immune mol 99.9 2.4E-25 8.2E-30 226.0 13.6 236 304-554 34-270 (487)
69 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-25 1.6E-29 211.6 13.3 239 305-559 11-250 (317)
70 2o6q_A Variable lymphocyte rec 99.9 1.4E-23 4.8E-28 196.5 21.7 215 19-238 2-217 (270)
71 1wwl_A Monocyte differentiatio 99.9 1.7E-26 5.8E-31 221.2 1.3 265 13-287 22-309 (312)
72 3g06_A SSPH2 (leucine-rich rep 99.9 4.8E-23 1.7E-27 213.1 26.1 269 226-546 40-308 (622)
73 2z62_A TOLL-like receptor 4, v 99.9 1.5E-23 5.2E-28 197.2 18.0 208 328-537 27-239 (276)
74 3oja_A Leucine-rich immune mol 99.9 1.1E-23 3.6E-28 213.9 17.0 216 329-559 34-250 (487)
75 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5E-27 189.6 21.6 204 329-536 16-219 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 9.5E-23 3.2E-27 191.8 19.2 204 34-238 28-236 (276)
77 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.4E-27 190.8 17.4 202 351-564 39-240 (272)
78 1p9a_G Platelet glycoprotein I 99.9 6.6E-22 2.2E-26 186.6 19.3 199 329-535 10-208 (290)
79 2ast_B S-phase kinase-associat 99.9 4.4E-23 1.5E-27 200.3 8.6 251 306-564 49-311 (336)
80 3goz_A Leucine-rich repeat-con 99.9 1.5E-23 5.1E-28 205.2 3.2 253 279-537 3-299 (362)
81 3rfs_A Internalin B, repeat mo 99.9 2.2E-21 7.5E-26 181.7 17.6 208 54-273 37-245 (272)
82 4glp_A Monocyte differentiatio 99.9 3.9E-22 1.3E-26 190.7 12.6 231 304-561 64-309 (310)
83 3m19_A Variable lymphocyte rec 99.9 3.4E-21 1.1E-25 178.2 17.6 189 20-214 3-192 (251)
84 2ca6_A RAN GTPase-activating p 99.9 2.1E-23 7.3E-28 206.3 2.9 194 349-562 90-319 (386)
85 1p9a_G Platelet glycoprotein I 99.9 1.3E-20 4.6E-25 177.6 20.7 204 300-512 6-209 (290)
86 2ast_B S-phase kinase-associat 99.9 3.7E-23 1.3E-27 200.8 2.0 266 19-324 34-313 (336)
87 2xwt_C Thyrotropin receptor; s 99.9 3.7E-21 1.3E-25 176.6 14.7 196 59-260 32-236 (239)
88 3m19_A Variable lymphocyte rec 99.9 1.5E-20 5.3E-25 173.7 18.7 181 353-537 14-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 3.3E-21 1.1E-25 177.0 13.5 200 329-556 31-236 (239)
90 3goz_A Leucine-rich repeat-con 99.8 5E-22 1.7E-26 194.4 7.0 260 231-513 3-299 (362)
91 1h6u_A Internalin H; cell adhe 99.8 9.5E-21 3.3E-25 180.5 15.1 191 329-536 41-231 (308)
92 4glp_A Monocyte differentiatio 99.8 1.2E-20 4.1E-25 180.4 14.8 229 274-536 64-308 (310)
93 1h6u_A Internalin H; cell adhe 99.8 9.4E-20 3.2E-24 173.7 17.5 194 301-512 38-231 (308)
94 2ca6_A RAN GTPase-activating p 99.8 1.2E-21 4.2E-26 193.6 2.5 251 50-321 24-320 (386)
95 2o6s_A Variable lymphocyte rec 99.8 2.6E-19 8.8E-24 160.5 17.1 180 22-222 7-186 (208)
96 4ay9_X Follicle-stimulating ho 99.8 5.3E-19 1.8E-23 171.9 17.1 220 330-554 31-254 (350)
97 3e6j_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 160.3 15.4 170 7-192 4-173 (229)
98 4ay9_X Follicle-stimulating ho 99.8 1.3E-18 4.6E-23 169.1 17.4 206 22-242 9-218 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1E-18 3.5E-23 156.5 15.3 173 356-563 10-182 (208)
100 3cvr_A Invasion plasmid antige 99.8 1.7E-19 5.8E-24 184.2 9.6 212 7-248 28-252 (571)
101 3cvr_A Invasion plasmid antige 99.8 2.3E-18 7.7E-23 175.9 16.2 190 329-547 59-255 (571)
102 2v9t_B SLIT homolog 2 protein 99.8 4.7E-18 1.6E-22 153.2 16.0 151 39-192 16-166 (220)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-17 3.5E-22 151.0 15.1 152 380-535 14-166 (220)
104 1h6t_A Internalin B; cell adhe 99.8 3.4E-18 1.2E-22 161.3 12.5 189 332-537 27-215 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-17 3.5E-22 151.0 14.8 153 38-193 15-168 (220)
106 2v9t_B SLIT homolog 2 protein 99.7 2.8E-17 9.4E-22 148.2 16.9 146 22-167 11-165 (220)
107 2xot_A Amphoterin-induced prot 99.7 7.7E-18 2.6E-22 164.4 13.7 174 38-214 22-202 (361)
108 1h6t_A Internalin B; cell adhe 99.7 8.3E-18 2.9E-22 158.7 13.2 170 329-513 46-215 (291)
109 1m9s_A Internalin B; cell inva 99.7 3.2E-17 1.1E-21 169.4 17.8 180 349-543 39-218 (605)
110 2xot_A Amphoterin-induced prot 99.7 2.1E-17 7.3E-22 161.2 14.3 176 356-559 21-202 (361)
111 3e6j_A Variable lymphocyte rec 99.7 1.2E-16 4.1E-21 145.0 17.2 150 61-214 22-172 (229)
112 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.8E-22 172.9 10.8 193 352-561 20-212 (605)
113 4ezg_A Putative uncharacterize 99.7 4.6E-17 1.6E-21 144.2 12.1 148 34-189 44-192 (197)
114 4ezg_A Putative uncharacterize 99.7 3.1E-17 1.1E-21 145.3 9.9 152 55-213 41-193 (197)
115 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.6E-22 152.8 7.9 168 329-536 19-186 (263)
116 3sb4_A Hypothetical leucine ri 99.7 2.8E-16 9.6E-21 151.3 14.7 264 273-553 24-328 (329)
117 4fs7_A Uncharacterized protein 99.7 4.3E-15 1.5E-19 146.8 23.5 335 45-430 58-393 (394)
118 1xeu_A Internalin C; cellular 99.7 4.4E-16 1.5E-20 144.4 13.1 165 36-214 21-185 (263)
119 3sb4_A Hypothetical leucine ri 99.7 1.7E-16 5.9E-21 152.8 9.2 205 225-437 100-309 (329)
120 1dce_A Protein (RAB geranylger 99.6 1.1E-18 3.7E-23 179.4 -7.2 190 350-563 346-550 (567)
121 4fs7_A Uncharacterized protein 99.6 1.7E-14 5.8E-19 142.5 21.7 317 70-435 59-376 (394)
122 1w8a_A SLIT protein; signaling 99.6 1.7E-15 5.8E-20 133.3 12.1 129 404-536 11-140 (192)
123 4fdw_A Leucine rich hypothetic 99.6 4.1E-14 1.4E-18 138.9 22.4 271 248-558 111-382 (401)
124 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 131.4 9.8 133 58-192 24-161 (168)
125 4fdw_A Leucine rich hypothetic 99.6 4.5E-14 1.5E-18 138.6 22.1 265 56-339 111-380 (401)
126 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6.3E-20 130.2 10.8 137 34-173 24-165 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.7E-20 126.5 10.6 128 57-186 16-148 (149)
128 1dce_A Protein (RAB geranylger 99.6 1.3E-17 4.5E-22 171.3 -4.6 121 403-553 443-567 (567)
129 1w8a_A SLIT protein; signaling 99.6 8.1E-15 2.8E-19 128.9 13.7 127 38-167 12-139 (192)
130 4b8c_D Glucose-repressible alc 99.6 3.3E-16 1.1E-20 166.2 5.6 202 20-236 161-369 (727)
131 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.4E-20 126.3 9.2 128 34-163 17-149 (149)
132 2o6r_A Variable lymphocyte rec 99.6 2.2E-14 7.6E-19 124.5 12.2 131 403-561 9-139 (177)
133 2wfh_A SLIT homolog 2 protein 99.6 5.3E-14 1.8E-18 123.6 14.3 126 38-167 14-139 (193)
134 2wfh_A SLIT homolog 2 protein 99.5 9E-14 3.1E-18 122.1 14.9 128 61-192 13-140 (193)
135 4b8c_D Glucose-repressible alc 99.5 3.3E-15 1.1E-19 158.5 6.3 169 34-211 191-369 (727)
136 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 119.7 14.8 132 22-168 7-138 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.4E-19 125.3 7.8 104 453-560 45-154 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 4.1E-14 1.4E-18 122.6 9.2 132 54-191 15-153 (176)
139 4gt6_A Cell surface protein; l 99.5 4.1E-12 1.4E-16 125.4 23.6 86 346-436 304-389 (394)
140 4gt6_A Cell surface protein; l 99.5 1.9E-11 6.5E-16 120.6 25.9 310 203-559 66-391 (394)
141 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 112.4 11.4 105 427-535 11-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.4 1.9E-15 6.4E-20 133.9 -7.3 156 373-560 14-186 (198)
143 2r9u_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 110.6 11.7 104 428-535 15-118 (174)
144 3g39_A Variable lymphocyte rec 99.3 8.2E-12 2.8E-16 107.1 12.8 86 82-167 30-115 (170)
145 3un9_A NLR family member X1; l 99.3 4.5E-14 1.5E-18 137.3 -1.7 185 376-560 71-284 (372)
146 1ds9_A Outer arm dynein; leuci 99.3 3.1E-14 1.1E-18 126.0 -3.3 133 349-487 14-153 (198)
147 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 106.4 12.7 86 82-167 33-118 (174)
148 3un9_A NLR family member X1; l 99.3 5.1E-14 1.8E-18 136.9 -5.2 184 352-536 71-284 (372)
149 4h09_A Hypothetical leucine ri 99.3 1.2E-09 4E-14 107.3 24.7 315 54-425 42-356 (379)
150 4h09_A Hypothetical leucine ri 99.2 4.1E-09 1.4E-13 103.4 25.3 167 373-546 190-356 (379)
151 2ifg_A High affinity nerve gro 99.1 2.6E-10 8.8E-15 110.5 12.1 99 42-143 16-116 (347)
152 2ifg_A High affinity nerve gro 99.1 2.7E-10 9.1E-15 110.4 10.2 89 470-559 27-116 (347)
153 2ra8_A Uncharacterized protein 98.9 5E-10 1.7E-14 107.7 3.9 85 472-557 250-341 (362)
154 2ra8_A Uncharacterized protein 98.8 5.9E-10 2E-14 107.2 0.5 183 353-561 107-322 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 2.7E-09 9.2E-14 92.6 -1.1 119 49-167 27-164 (185)
156 3e4g_A ATP synthase subunit S, 98.6 5.9E-09 2E-13 87.7 0.3 81 453-533 64-150 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 1.4E-08 4.9E-13 88.0 1.0 88 472-559 63-164 (185)
158 3rw6_A Nuclear RNA export fact 98.3 3.7E-08 1.3E-12 89.6 -1.6 80 103-184 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.3 1.8E-07 6E-12 78.7 1.7 82 83-164 62-149 (176)
160 3rw6_A Nuclear RNA export fact 98.2 1.5E-06 5E-11 79.1 5.1 80 471-552 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 1.5E-05 5.2E-10 68.3 -0.0 114 52-165 35-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00017 5.7E-09 61.8 3.0 40 348-387 93-136 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0013 4.6E-08 52.4 6.5 57 477-535 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0049 1.7E-07 49.1 6.3 57 453-511 11-68 (130)
165 2lz0_A Uncharacterized protein 80.4 3.7 0.00013 30.4 5.7 47 44-91 6-52 (100)
166 2lz0_A Uncharacterized protein 79.9 4.8 0.00016 29.8 6.2 45 365-410 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-68 Score=576.14 Aligned_cols=558 Identities=31% Similarity=0.483 Sum_probs=457.7
Q ss_pred CcccCCCCCCCCCCCcCCCCCCcccccccCCCCCcEEEEEcCCCccccc---cC-----------------------ccC
Q 046712 1 MKSQLQDPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGV---LS-----------------------PFV 54 (566)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~---~~-----------------------~~~ 54 (566)
||+++.||. ++++|..+++||.|.||.|. ..+|++|+|+++.+.+. ++ ..|
T Consensus 20 ~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~ 96 (768)
T 3rgz_A 20 FKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF 96 (768)
T ss_dssp HHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCC
T ss_pred HHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhh
Confidence 788999999 99999999999999999998 48999999999988765 32 578
Q ss_pred cCCCCCCEEecCCCcccccCCc--ccCCCCCCCEEeCCCCcCCCcCcccc-ccCCCCcEEEcCCCcCCCCcchh---c--
Q 046712 55 GNLNFLRSINLPNNSFRGKIPH--EVGNLFRLQNLTLTNNYFLGKILTDL-SHCSNLMKFEASNNKLEGEIPVK---I-- 126 (566)
Q Consensus 55 ~~l~~L~~L~ls~~~l~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~---l-- 126 (566)
+++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..+..+ .++++|++|++++|.+++..+.. +
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 8889999999999988877777 78888889999998888776655554 56777777777777766444433 3
Q ss_pred --------------------cCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecc
Q 046712 127 --------------------SNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVA 186 (566)
Q Consensus 127 --------------------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 186 (566)
..+++|++|++++|.+.+..|. ++.+++|++|++++|.+++..|.++..+++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 4556666666777776655555 7788888888888888877777888888888888888
Q ss_pred cccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccc
Q 046712 187 YNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKV 266 (566)
Q Consensus 187 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 266 (566)
+|.+.+..+.. .+++|++|++++|.+.+.+|......+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 88887666644 77888888888888888888877755689999999999988888888899999999999999887555
Q ss_pred ccc-ccCCCCCcEEECCCCccCCcCCCChhhhh-------------------hccC--CCCCCEEEccCCeeeeecchhH
Q 046712 267 SIN-FSRLQNLSRLNLGENNLGTGTTNDLDFIT-------------------LLTN--CTKLEVLDLHSNRFGGVLPFSL 324 (566)
Q Consensus 267 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------------------~l~~--~~~L~~L~l~~~~~~~~~~~~~ 324 (566)
+.. +..+++|++|++++|.+....+..+.... .+.. +++|+.|++++|.+.+..|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 544 78888899999888887643333221110 1111 5678888888888877777776
Q ss_pred hhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 046712 325 ANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLT 404 (566)
Q Consensus 325 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 404 (566)
... +.|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 415 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 415 SNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 654 7888888888888878888888888888888888888888888888888888888888888888888888888899
Q ss_pred eEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCc----------------
Q 046712 405 QLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT---------------- 468 (566)
Q Consensus 405 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---------------- 468 (566)
+|++++|++.+.+|..+..+++|++|++++|++.+..|..+..+..+ +.|++++|++.+..|.
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 99999988888888888888899999999998888888888777666 8888888887755443
Q ss_pred ------------------------------------------------------CccCCCCCCEEeCccccccccCCccc
Q 046712 469 ------------------------------------------------------KVGNLKNLVSLDISSNMFSGEIPTTL 494 (566)
Q Consensus 469 ------------------------------------------------------~~~~~~~L~~L~ls~~~l~~~~~~~~ 494 (566)
.+..+++|+.||+++|++++.+|..|
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 23446789999999999999999999
Q ss_pred cCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCCC
Q 046712 495 GGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565 (566)
Q Consensus 495 ~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 565 (566)
+.+++|++|+|++|.+++.+|+.++.+++|+.|||++|++++.+|+.+..+++|++|++++|+++|.||.+
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-58 Score=496.59 Aligned_cols=513 Identities=30% Similarity=0.475 Sum_probs=396.1
Q ss_pred CcEEEEEcCCCccccccCccC-cCCCCCCEEecCCCcccccCCcc---cC----------------------CCCCCCEE
Q 046712 34 QRVTGLDLRHQSVGGVLSPFV-GNLNFLRSINLPNNSFRGKIPHE---VG----------------------NLFRLQNL 87 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~-~~l~~L~~L~ls~~~l~~~~~~~---~~----------------------~l~~L~~L 87 (566)
+++++|++++|.+.+..+..+ .++++|++|++++|.+++..|.. +. ++++|++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 566777777776665555544 56666666666666665444433 44 44555555
Q ss_pred eCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712 88 TLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 88 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 167 (566)
++++|.+.+..+. +.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..|.. .+++|++|++++|.++
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccC
Confidence 5555555444443 555555556666555555555555555666666666665555444433 5556666666666665
Q ss_pred ccCCcccccC-CcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCccc
Q 046712 168 GRIPSTISHV-RNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDS 245 (566)
Q Consensus 168 ~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 245 (566)
+.+|..+... ++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.+|......+++|++|++++|.+.+..+..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 5566665553 677777777777665554 56667777777777777766666553446777777777777776666666
Q ss_pred ccccC-CCCeeecccccccccccccccC--CCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecch
Q 046712 246 LSNAT-NLQGLEINRNLFSGKVSINFSR--LQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPF 322 (566)
Q Consensus 246 l~~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 322 (566)
+..++ +|+.|++++|.+.+..+..+.. +++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..|.
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------PTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC------GGGGGCTTCCEEECCSSEEESCCCG
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC------HHHhcCCCCCEEECcCCcccCcccH
Confidence 66665 7777777777776655555544 6778888888887765544 5577899999999999999988888
Q ss_pred hHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCC
Q 046712 323 SLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTL 402 (566)
Q Consensus 323 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 402 (566)
.+... ++|+.|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+..+++
T Consensus 437 ~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 437 SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 87765 89999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhh----------------------------------
Q 046712 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI---------------------------------- 448 (566)
Q Consensus 403 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---------------------------------- 448 (566)
|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|..++..
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998877766442
Q ss_pred -----------------------------------cccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcc
Q 046712 449 -----------------------------------ITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493 (566)
Q Consensus 449 -----------------------------------~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~ 493 (566)
...++.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 123578999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCc
Q 046712 494 LGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNH 557 (566)
Q Consensus 494 ~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 557 (566)
|..+++|++|+|++|.+++.+|+.+..++.|++|++++|++++.+|+. ..+..+....+.||+
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence 999999999999999999999999999999999999999999999975 445566677777885
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.5e-55 Score=466.58 Aligned_cols=520 Identities=20% Similarity=0.226 Sum_probs=368.7
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+++++|++++|.+++..+..|+++++|++|++++|.+++..|.+|.++++|++|++++|.++...+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 68999999999999888888999999999999999999888889999999999999999998777778999999999999
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccc--cCCcccEeecccccce
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTIS--HVRNLISFNVAYNQFS 191 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~--~l~~L~~L~l~~~~~~ 191 (566)
++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999877778899999999999999999887888889999999999999998866555554 4578888888888776
Q ss_pred ecCC-cccCc---------------------------ccCceEecccccccccCCCCCCCCC--CCCcEEEccccccccc
Q 046712 192 GMIP-PIYNI---------------------------SSLQYIFIHTNRFHGSVPLDNGVNL--PNLRYFSISGNNLTGS 241 (566)
Q Consensus 192 ~~~~-~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~ 241 (566)
+..+ .+..+ ++|++|+++++.+.+..+.... .+ ++|++|++++|.+...
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCcc
Confidence 5544 22222 3455555555555443333222 23 2366666666666655
Q ss_pred CcccccccCCCCeeecccccccccccccccCCCCCcEEECC---------------------------------CCccCC
Q 046712 242 LQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLG---------------------------------ENNLGT 288 (566)
Q Consensus 242 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~---------------------------------~~~~~~ 288 (566)
.+..+..+++|+.|++++|.+.+..+..+..+++|+.|+++ +|.+..
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 55556666666666666666555544445555555555554 444433
Q ss_pred cCCCChhhhhhccCCCCCCEEEccCCeee--eecchhHhhh-ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcc
Q 046712 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFG--GVLPFSLANL-STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQL 365 (566)
Q Consensus 289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 365 (566)
..+ ..+..+++|+.|++++|.+. ......+... .+.|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 344 ~~~------~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 344 IKS------NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp CCT------TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCh------hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 322 23444555555555555422 1111111111 13566666666666666666777777777777777777
Q ss_pred ccccc-ccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc--ccCCCCCcCCCCCcEEEccCCcceeccc
Q 046712 366 AGTIP-LAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ--GKIPPSNGNCQNLILLTTRKNKLSGIVP 442 (566)
Q Consensus 366 ~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 442 (566)
.+..+ ..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|.+.+..+
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~ 497 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence 65433 56777777777777777777666667777777888888777765 4566777788888888888888776555
Q ss_pred hhhhhhcccceEEEccCCcccccCC--------cCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccC
Q 046712 443 RQLLRIITLSVLLDLSDNLLSGHFP--------TKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514 (566)
Q Consensus 443 ~~~~~~~~~l~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 514 (566)
..+..+..+ +.|++++|.+.+... ..+..+++|+.|++++|++....+..|.++++|++|++++|.++...
T Consensus 498 ~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 498 DMLEGLEKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp TTTTTCTTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred hhhcccccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence 555555554 888888887775422 23667788888888888887444446778888888888888888655
Q ss_pred CcCCcCCCCCCEEeCCCCccccccCcccc-ccccCceeecccCcCccc
Q 046712 515 PSTLSSLKSITELDLSRNNLSGHIPQYLE-NLSFLLFLNMSYNHFEGK 561 (566)
Q Consensus 515 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~ 561 (566)
+..|..+++|+.|++++|+++...+..+. .+++|+.|++++|++...
T Consensus 577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 66677888888888888888876666666 678888888888876554
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-55 Score=461.26 Aligned_cols=515 Identities=19% Similarity=0.165 Sum_probs=431.2
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
..+++|++++|.+++..+..|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..+..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 68999999999999998999999999999999999999888999999999999999999999888889999999999999
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCccc--Eeecccccce
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI--SFNVAYNQFS 191 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~--~L~l~~~~~~ 191 (566)
++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999976678899999999999999999864434555699999999999999877788899999999 8999999999
Q ss_pred ecCCcccCcccCceEecccccccccCCCCCCCCCCCCc--EEEcccc---cccccCcccccccC--CCCeeecccccccc
Q 046712 192 GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR--YFSISGN---NLTGSLQDSLSNAT--NLQGLEINRNLFSG 264 (566)
Q Consensus 192 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~---~~~~~~~~~l~~~~--~L~~L~l~~~~~~~ 264 (566)
+..+.......|+.++++++........ .+.++. .+.+... .........+..+. +|+.+++++|.+..
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFK----GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHH----HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred ccChhHhhhccccccccCCchhHHHHhh----hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 8888777778899999988752211111 222222 2322221 11112222333332 68899999999988
Q ss_pred cccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC
Q 046712 265 KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344 (566)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 344 (566)
..+..|..+++|++|++++|.+...+. .+..+++|++|++++|.+.+..+..+... +.|++|++++|.+.+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPS-------GLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLE 340 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCS-------SCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCB
T ss_pred cCHHHhccccCCCEEeccCCccCCCCh-------hhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccc
Confidence 777778899999999999998876543 36788999999999999887766666554 8999999999988755
Q ss_pred cc-hhhhccCCCCeecccCCcccccc--cccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCC-C
Q 046712 345 IP-DVIANLVNLNALGVESNQLAGTI--PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP-S 420 (566)
Q Consensus 345 ~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~ 420 (566)
++ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+. .
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 54 45888999999999999998665 66788999999999999999877788899999999999999998876654 4
Q ss_pred CcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc---CCcCccCCCCCCEEeCccccccccCCccccCC
Q 046712 421 NGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH---FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGC 497 (566)
Q Consensus 421 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~ 497 (566)
+..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+.+. .+..+..+++|+.|++++|++.+..|..|..+
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 8889999999999999987777777766665 9999999998763 33568899999999999999998888899999
Q ss_pred CCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccC
Q 046712 498 TSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKV 562 (566)
Q Consensus 498 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 562 (566)
++|++|++++|.+++..|+++..++.| .|++++|++++..|+.+..+++|+.|++++|+++...
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 999999999999999899999999999 9999999999888889999999999999999887654
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-53 Score=449.24 Aligned_cols=512 Identities=19% Similarity=0.173 Sum_probs=424.2
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+.+++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 68999999999999888889999999999999999999778889999999999999999998888899999999999999
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCccc----Eeecccc
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI----SFNVAYN 188 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~~~ 188 (566)
++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|+ ++++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999987776789999999999999999875 5789999999999999999999877788787776665 7999999
Q ss_pred cceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccc------cCcccccccC--CCCeeec-cc
Q 046712 189 QFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG------SLQDSLSNAT--NLQGLEI-NR 259 (566)
Q Consensus 189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~l~~~~--~L~~L~l-~~ 259 (566)
.+....+......+|+.|++++|.+.+.........++.++.+.+..+.+.. .....+..+. .++.+.+ ..
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 9988887666666899999999877643322333377888887776543321 1111122221 3445555 44
Q ss_pred ccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCC
Q 046712 260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN 339 (566)
Q Consensus 260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 339 (566)
+.+.+..+. +..+++|+.++++++.+...+ .+..+++|+.|++++|.+ +..|. + ..+.|++|++++|
T Consensus 272 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n 338 (606)
T 3vq2_A 272 NDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMN 338 (606)
T ss_dssp TTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESC
T ss_pred ccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCC
Confidence 555555554 788899999999999886654 266788999999999998 45563 3 4589999999999
Q ss_pred CCCCCcchhhhccCCCCeecccCCcccccc--cccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccC
Q 046712 340 QISDTIPDVIANLVNLNALGVESNQLAGTI--PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI 417 (566)
Q Consensus 340 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 417 (566)
...... .+..+++|++|++++|.+++.. +..+..+++|++|++++|.++ .++..+..+++|+.|++++|++.+..
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTT
T ss_pred cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCcc
Confidence 654333 5668899999999999988653 677889999999999999988 46678889999999999999998777
Q ss_pred C-CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc-cCCcCccCCCCCCEEeCccccccccCCcccc
Q 046712 418 P-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG-HFPTKVGNLKNLVSLDISSNMFSGEIPTTLG 495 (566)
Q Consensus 418 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~ 495 (566)
+ ..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+ ..+..+..+++|++|++++|.+.+..|..+.
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 6 678899999999999999998888777777666 999999999987 4788899999999999999999988888899
Q ss_pred CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccc-cCceeecccCcCcccCC
Q 046712 496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p 563 (566)
.+++|++|++++|.+++..|+.+..+++|++|++++|+++ .+|..+..++ +|+.|++++|+++...|
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999999999888999999999999999999998 6777788887 69999999998886544
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-52 Score=443.30 Aligned_cols=521 Identities=18% Similarity=0.163 Sum_probs=400.5
Q ss_pred EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCc
Q 046712 38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNK 117 (566)
Q Consensus 38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 117 (566)
.++.++++++. +|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 46667777774 444444 799999999999997777789999999999999999998889999999999999999999
Q ss_pred CCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-c
Q 046712 118 LEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-P 196 (566)
Q Consensus 118 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~ 196 (566)
++...+..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ .
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 996666679999999999999999987667889999999999999999998888889999999999999999887665 2
Q ss_pred --ccCcccCceEecccccccccCCCCCCC--------------------------CCCCCcEEEcccccccccCcccccc
Q 046712 197 --IYNISSLQYIFIHTNRFHGSVPLDNGV--------------------------NLPNLRYFSISGNNLTGSLQDSLSN 248 (566)
Q Consensus 197 --l~~~~~L~~L~l~~~~~~~~~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~~l~~ 248 (566)
...+++|++|++++|.+.+..+..... ..++|+.|++++|.+.+..+..+..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 335689999999999887544432210 1257888888888888777777877
Q ss_pred cC--CCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhh---------------------------hhh
Q 046712 249 AT--NLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDF---------------------------ITL 299 (566)
Q Consensus 249 ~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------------------------~~~ 299 (566)
++ +|+.|++++|.+....+..+..+++|++|++++|.+....+..+.. ...
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 75 4999999999998888788999999999999999887665421110 002
Q ss_pred ccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC--cchhhhc--cCCCCeecccCCcccccccccccC
Q 046712 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT--IPDVIAN--LVNLNALGVESNQLAGTIPLAIGE 375 (566)
Q Consensus 300 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~ 375 (566)
+..+++|+.|++++|.+.+..+..+... +.|++|++++|.+... ....+.. .++|+.|++++|.+++..+..+..
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred cccCCCCCEEECCCCccCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 2334444444444444444333333222 4455555554443211 1111211 135556666666666666677778
Q ss_pred CCCCCEEEccCCcccccCC-ccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcce--eccchhhhhhcccc
Q 046712 376 LKSIQILFLNENFLRGTIP-SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLS--GIVPRQLLRIITLS 452 (566)
Q Consensus 376 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~l 452 (566)
+++|++|++++|.+.+.++ ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+..+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L- 482 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL- 482 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-
Confidence 8888888888888875554 57778888888888888887777778888888888888888775 3456666666555
Q ss_pred eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCC--------ccccCCCCCcEEeCCCCcccccCCcCCcCCCCC
Q 046712 453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIP--------TTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSI 524 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~--------~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L 524 (566)
+.|++++|.+.+..+..|..+++|++|++++|++.+..+ ..+.++++|++|++++|.++...++.|..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 999999999998888888999999999999999874321 237888999999999999995555678999999
Q ss_pred CEEeCCCCccccccCccccccccCceeecccCcCcccCC
Q 046712 525 TELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 525 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 563 (566)
+.|++++|+++...+..|..+++|+.|++++|++++..|
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 999999999997777778899999999999999987654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-51 Score=433.72 Aligned_cols=510 Identities=17% Similarity=0.157 Sum_probs=423.7
Q ss_pred EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCc
Q 046712 38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNK 117 (566)
Q Consensus 38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 117 (566)
.++.++..++ .+|..+. +++++|++++|.+++..|.+|.++++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3444555555 3444443 479999999999998889999999999999999999998889999999999999999999
Q ss_pred CCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-c
Q 046712 118 LEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-P 196 (566)
Q Consensus 118 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~ 196 (566)
+.+..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ .
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 997888899999999999999999996667889999999999999999986444555569999999999999988766 6
Q ss_pred ccCcccCc--eEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccc-----ccccccc
Q 046712 197 IYNISSLQ--YIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLF-----SGKVSIN 269 (566)
Q Consensus 197 l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-----~~~~~~~ 269 (566)
+..+++|+ .|++++|.+.+..+.. + ....|+.|+++++... +..+..+..+....+.-..+ .......
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred hhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhH
Confidence 77888998 8999999988655444 3 4578999999988522 22333444333322221111 1122223
Q ss_pred ccCCC--CCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcch
Q 046712 270 FSRLQ--NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPD 347 (566)
Q Consensus 270 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 347 (566)
+..+. +|+.+++++|.+....+ ..+..+++|+.|++++|.+. ..|..+.. .+.|++|++++|.+.+..+.
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISS------NTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCT------TTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGG
T ss_pred hchhhcCceeEEEeecCccCccCH------HHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchh
Confidence 33333 79999999999988766 45778999999999999988 55655544 38999999999999987788
Q ss_pred hhhccCCCCeecccCCcccccc-cccccCCCCCCEEEccCCcccccC--CccccCCCCCCeEeccCccccccCCCCCcCC
Q 046712 348 VIANLVNLNALGVESNQLAGTI-PLAIGELKSIQILFLNENFLRGTI--PSSLGNLTLLTQLILEVNNLQGKIPPSNGNC 424 (566)
Q Consensus 348 ~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 424 (566)
.+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 8999999999999999987544 445889999999999999998655 6788999999999999999998888999999
Q ss_pred CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccccc---CCccccCCCCCc
Q 046712 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE---IPTTLGGCTSLE 501 (566)
Q Consensus 425 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~---~~~~~~~~~~L~ 501 (566)
++|++|++++|.+.+..+.......+.++.|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 99999999999998776655334444559999999999988888999999999999999999752 235688999999
Q ss_pred EEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712 502 YLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564 (566)
Q Consensus 502 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 564 (566)
+|++++|.+++..|.+|..+++|++|++++|++++..|+.+..+++| .|++++|++++..|.
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 99999999998889999999999999999999999999999999999 999999999987764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.2e-50 Score=420.99 Aligned_cols=505 Identities=18% Similarity=0.170 Sum_probs=419.1
Q ss_pred EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712 37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116 (566)
Q Consensus 37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 116 (566)
++++.++++++.. |..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 3577778888754 43343 89999999999999888889999999999999999999888889999999999999999
Q ss_pred cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcc-cCCcccccCCcccEeecccccceecCC
Q 046712 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVAYNQFSGMIP 195 (566)
Q Consensus 117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (566)
.+++..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|..++++++|+.|++++|.+.+..+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 9998889999999999999999999986666889999999999999999975 569999999999999999999988766
Q ss_pred -cccCcccCc----eEecccccccccCCCCCCCCCCCCcEEEccccccc-ccCcccccccCCCCeeeccccccccc----
Q 046712 196 -PIYNISSLQ----YIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT-GSLQDSLSNATNLQGLEINRNLFSGK---- 265 (566)
Q Consensus 196 -~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~---- 265 (566)
.+..+.+++ ++++++|.+. .++...+ ...+|++|++++|.+. ...+..+..++.++.+.+....+...
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 566666554 8999999987 4555555 3448999999999875 34566678888888887754433211
Q ss_pred --ccccccCCC--CCcEEEC-CCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCC
Q 046712 266 --VSINFSRLQ--NLSRLNL-GENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQ 340 (566)
Q Consensus 266 --~~~~~~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 340 (566)
....+..+. .++.+++ ..+.+....+ .+..+++|+.|+++++.+.. .+ .+.. .+.|++|++.+|.
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~-l~-~l~~-~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-------KFHCLANVSAMSLAGVSIKY-LE-DVPK-HFKWQSLSIIRCQ 318 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-------SCGGGTTCSEEEEESCCCCC-CC-CCCT-TCCCSEEEEESCC
T ss_pred ccChHHhhhhhhccHhheecccccccccccc-------ccccCCCCCEEEecCccchh-hh-hccc-cccCCEEEccccc
Confidence 111122222 3555666 3344433222 26778999999999999874 34 3333 3799999999999
Q ss_pred CCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCccccc--CCccccCCCCCCeEeccCccccccCC
Q 046712 341 ISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT--IPSSLGNLTLLTQLILEVNNLQGKIP 418 (566)
Q Consensus 341 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~ 418 (566)
+ +.+|. + .+++|++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ ++
T Consensus 319 l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~ 392 (606)
T 3vq2_A 319 L-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392 (606)
T ss_dssp C-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC
T ss_pred C-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch
Confidence 9 56774 4 8999999999999655333 577899999999999999855 37788999999999999999884 56
Q ss_pred CCCcCCCCCcEEEccCCcceeccc-hhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc-cCCccccC
Q 046712 419 PSNGNCQNLILLTTRKNKLSGIVP-RQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG-EIPTTLGG 496 (566)
Q Consensus 419 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~-~~~~~~~~ 496 (566)
..+..+++|+.|++++|.+.+..+ ..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 889999999999999999998777 44555544 4999999999998899999999999999999999986 47888999
Q ss_pred CCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712 497 CTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564 (566)
Q Consensus 497 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 564 (566)
+++|++|++++|.+++..|+.+..+++|++|++++|++++.+|..+..+++|+.|++++|+++ .+|.
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 999999999999999888999999999999999999999989999999999999999999998 5554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-50 Score=435.60 Aligned_cols=517 Identities=20% Similarity=0.190 Sum_probs=419.4
Q ss_pred CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc-CCcccCCCCCCCEEeCCCCcCCCcCcc
Q 046712 22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK-IPHEVGNLFRLQNLTLTNNYFLGKILT 100 (566)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~ 100 (566)
+.|..+.+ ..+.+++|+|++|.+++..+..|.++++|++|++++|..... .|.+|.++++|++|++++|.+.+..+.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 57777766 448999999999999999999999999999999999955444 488999999999999999999988899
Q ss_pred ccccCCCCcEEEcCCCcCCCCcchh--ccCCCCCCEEecccccCCCCCC-ccccCCCCCCEEEccCCcCcccCCcccccC
Q 046712 101 DLSHCSNLMKFEASNNKLEGEIPVK--ISNLLMLQILNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISHV 177 (566)
Q Consensus 101 ~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l 177 (566)
.|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998766655 8899999999999999986544 578999999999999999998888888887
Q ss_pred --CcccEeecccccceecCC-cccCccc------CceEecccccccccCCCCCCC--CCCCCcEEEccccc---------
Q 046712 178 --RNLISFNVAYNQFSGMIP-PIYNISS------LQYIFIHTNRFHGSVPLDNGV--NLPNLRYFSISGNN--------- 237 (566)
Q Consensus 178 --~~L~~L~l~~~~~~~~~~-~l~~~~~------L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~--------- 237 (566)
++|+.|++++|.+.+..+ .+..++. |+.|++++|.+.+..+..... ....++.+.+..+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 899999999998877555 4444444 999999999887666554432 23567788776332
Q ss_pred ccccCccccccc--CCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCe
Q 046712 238 LTGSLQDSLSNA--TNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNR 315 (566)
Q Consensus 238 ~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 315 (566)
+.......+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------TTTTTCSSCCEEEEESCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh------HHhcCCCCCCEEECCCCC
Confidence 222223334443 689999999999888777888899999999999998887665 456788999999999999
Q ss_pred eeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCc
Q 046712 316 FGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPS 395 (566)
Q Consensus 316 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 395 (566)
+.+..+..+... +.|+.|++++|.+....+..+..+++|++|++++|.+++ +..+++|+.+++++|.++ .++.
T Consensus 326 l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~ 398 (844)
T 3j0a_A 326 LGELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPK 398 (844)
T ss_dssp CSCCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCC
T ss_pred CCccCHHHhcCC-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-cccc
Confidence 887766666554 789999999999987777788889999999999998873 234788999999999987 4443
Q ss_pred cccCCCCCCeEeccCccccccCC-CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc-----cCCcC
Q 046712 396 SLGNLTLLTQLILEVNNLQGKIP-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG-----HFPTK 469 (566)
Q Consensus 396 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-----~~~~~ 469 (566)
. ..+++.|++++|.+.+... ..+..+++|+.|++++|++.+..+.......+.++.|++++|.+.. ..+..
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 3 4678999999998874322 2244789999999999998865444333334556899999998863 34456
Q ss_pred ccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCc
Q 046712 470 VGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLL 549 (566)
Q Consensus 470 ~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 549 (566)
|..+++|+.|++++|++++..+..|.++++|++|+|++|.++...+..+. ++|+.|++++|++++..|..+. +|+
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~ 550 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLS 550 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCC
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcC
Confidence 78889999999999999988888899999999999999999976666666 8999999999999988887754 788
Q ss_pred eeecccCcCccc
Q 046712 550 FLNMSYNHFEGK 561 (566)
Q Consensus 550 ~L~l~~n~~~~~ 561 (566)
.|++++|++...
T Consensus 551 ~l~l~~Np~~C~ 562 (844)
T 3j0a_A 551 VLDITHNKFICE 562 (844)
T ss_dssp EEEEEEECCCCS
T ss_pred EEEecCCCcccc
Confidence 999999987653
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-48 Score=408.71 Aligned_cols=491 Identities=19% Similarity=0.213 Sum_probs=314.1
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+.+++|++++|.+++..+.+|..+++|++|++++|.+++..+.+|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57889999999998888888999999999999999888777788899999999999999888777788899999999999
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCcc----cEeecccc
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVAYN 188 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~~~ 188 (566)
++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9998886555568889999999999998875 468889999999999999998887777778888877 78888888
Q ss_pred cceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc------cccCcccccccCC--CCeeecccc
Q 046712 189 QFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL------TGSLQDSLSNATN--LQGLEINRN 260 (566)
Q Consensus 189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~~--L~~L~l~~~ 260 (566)
.+....+.......|+.|+++++.............++.++...+....+ .......+..+++ ++.+++.++
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 88877775554457888888776332111111111445555544432211 1111122222222 233444443
Q ss_pred -cccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCC
Q 046712 261 -LFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN 339 (566)
Q Consensus 261 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 339 (566)
.+.+..+..+..+++|+.|+++++.+...+. .+..+ +|+.|++++|.+. ..|. ...+.|++|++.+|
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-------~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n 335 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-------FSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSN 335 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCB-------CCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhh-------hhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCC
Confidence 3333444445555666666666665543322 13334 5666666666554 2222 12245555555555
Q ss_pred CCCCCcchhhhccCCCCeecccCCcccccc--cccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccC
Q 046712 340 QISDTIPDVIANLVNLNALGVESNQLAGTI--PLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKI 417 (566)
Q Consensus 340 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 417 (566)
.+....+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCT
T ss_pred cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCcccccc
Confidence 55433332 44555555555555554332 34445555555555555555532 222555555555555555555433
Q ss_pred C-CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc-ccCCcccc
Q 046712 418 P-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS-GEIPTTLG 495 (566)
Q Consensus 418 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~-~~~~~~~~ 495 (566)
+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+. +.+|..+.
T Consensus 413 ~~~~~~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHT-------------------------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp TSCTTTTCTTCCEEECTTS-------------------------CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred chhhhhcCCCCCEEeCcCC-------------------------cccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 3 23444555555555544 444445555666677777777777665 34666667
Q ss_pred CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712 496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564 (566)
Q Consensus 496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 564 (566)
.+++|++|++++|.+++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 777777777777777766666777777777777777777766666667777777777777777766653
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-48 Score=420.58 Aligned_cols=505 Identities=20% Similarity=0.200 Sum_probs=416.5
Q ss_pred EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCC-cCccccccCCCCcEEEcCC
Q 046712 37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG-KILTDLSHCSNLMKFEASN 115 (566)
Q Consensus 37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~ 115 (566)
+..+.++++++..+. ..++|++|++++|.+++..+.+|.++++|++|++++|.... ..+..|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 566777888885543 45899999999999998889999999999999999995543 4478899999999999999
Q ss_pred CcCCCCcchhccCCCCCCEEecccccCCCCCCcc--ccCCCCCCEEEccCCcCcccCC-cccccCCcccEeeccccccee
Q 046712 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPAS--IGNLSALQEIDVRGNRLGGRIP-STISHVRNLISFNVAYNQFSG 192 (566)
Q Consensus 116 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~ 192 (566)
|.+.+..|..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+ ..++++++|+.|++++|.+.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999998766655 8999999999999999986554 579999999999999999887
Q ss_pred cCC-cccCc--ccCceEecccccccccCCCCCCCCCC------CCcEEEcccccccccCccccccc---CCCCeeecccc
Q 046712 193 MIP-PIYNI--SSLQYIFIHTNRFHGSVPLDNGVNLP------NLRYFSISGNNLTGSLQDSLSNA---TNLQGLEINRN 260 (566)
Q Consensus 193 ~~~-~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~ 260 (566)
..+ .+..+ ++|+.|++++|.+.+..+.... .++ .|+.|++++|.+....+..+... ..++.+.+..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 665 55555 8999999999998876665543 333 39999999998776555544432 46777776633
Q ss_pred c---------ccccccccccCC--CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhcc
Q 046712 261 L---------FSGKVSINFSRL--QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLST 329 (566)
Q Consensus 261 ~---------~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 329 (566)
. +.......|.++ ++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+... +
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~ 314 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNKINKIADEAFYGL-D 314 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCCCCEECTTTTTTC-S
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCcCCCCChHHhcCC-C
Confidence 2 222223334443 789999999999887655 457789999999999999998877776654 8
Q ss_pred CCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046712 330 TMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 330 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 409 (566)
+|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ + ..+++|+.|+++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~ 389 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLS 389 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEE
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccC
Confidence 99999999999998888899999999999999999998888889999999999999999873 2 238899999999
Q ss_pred CccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCc-CccCCCCCCEEeCcccccc-
Q 046712 410 VNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPT-KVGNLKNLVSLDISSNMFS- 487 (566)
Q Consensus 410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ls~~~l~- 487 (566)
+|++. .+|.. ..+++.|++++|++.+.....+....+.++.|++++|.+.+..+. .+..+++|+.|++++|.+.
T Consensus 390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred CCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 99988 44433 578999999999998654433333344559999999999865433 4567899999999999986
Q ss_pred ----ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCC
Q 046712 488 ----GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 488 ----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 563 (566)
+..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|+++...+..+. ++|+.|++++|++++..|
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 23345688899999999999999988888999999999999999999977776666 899999999999999988
Q ss_pred C
Q 046712 564 I 564 (566)
Q Consensus 564 ~ 564 (566)
.
T Consensus 544 ~ 544 (844)
T 3j0a_A 544 D 544 (844)
T ss_dssp C
T ss_pred h
Confidence 5
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-47 Score=397.92 Aligned_cols=491 Identities=17% Similarity=0.182 Sum_probs=317.1
Q ss_pred CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccc
Q 046712 22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD 101 (566)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 101 (566)
|.|.++ | +.+++.++..+ ..+. ++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..
T Consensus 4 C~~~~~-c----------~~~~~~l~~ip-~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 4 CDASGV-C----------DGRSRSFTSIP-SGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp ECTTSE-E----------ECTTSCCSSCC-SCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred CCCCce-E----------ECCCCcccccc-ccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 667665 4 33455555332 2222 56777777777666556666677777777777777666666666
Q ss_pred cccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccC-CcccccCCc
Q 046712 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRI-PSTISHVRN 179 (566)
Q Consensus 102 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~ 179 (566)
|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ ..+..++.+++|++|++++|...+.+ +..+..+++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 6667777777777777665555556667777777777776653 23456666777777777766632233 345666677
Q ss_pred ccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccC---cccccccCCCCee
Q 046712 180 LISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSL---QDSLSNATNLQGL 255 (566)
Q Consensus 180 L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L 255 (566)
|+.|++++|.+.+..+ .+..+++|++|+++.+... .++......+++|++|++++|.+.+.. ......+++|+.+
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 7777777776665444 5566666777776666543 223222224667777777777665431 1122345677777
Q ss_pred eccccccccccc----ccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc----hhHhhh
Q 046712 256 EINRNLFSGKVS----INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP----FSLANL 327 (566)
Q Consensus 256 ~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~ 327 (566)
++.++.+.+... ..+..+++|+.+++++|.+.............+..+++|+.+++.++.+..... ..+...
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 777776654322 223456677777777776554322111111335667888888888876543210 112233
Q ss_pred ccCCcEEEccCCCCCCCcchhh-hccCCCCeecccCCccccccc---ccccCCCCCCEEEccCCcccccCC--ccccCCC
Q 046712 328 STTMTEIAIGSNQISDTIPDVI-ANLVNLNALGVESNQLAGTIP---LAIGELKSIQILFLNENFLRGTIP--SSLGNLT 401 (566)
Q Consensus 328 ~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~ 401 (566)
.+.+++|++++|.+. .+|..+ ..+++|++|++++|.+.+..+ ..++.+++|++|++++|.+++..+ ..+..++
T Consensus 309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 478999999999887 455544 678999999999999886553 346788999999999999874322 4578889
Q ss_pred CCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeC
Q 046712 402 LLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDI 481 (566)
Q Consensus 402 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 481 (566)
+|++|++++|++. .+|..+..+++|++|++++|.+.+. +..+ ++.++.|++++|.+.+. ...+++|++|++
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~---~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~L 458 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI---PQTLEVLDVSNNNLDSF----SLFLPRLQELYI 458 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS---CTTCSEEECCSSCCSCC----CCCCTTCCEEEC
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh---cCCceEEECCCCChhhh----cccCChhcEEEC
Confidence 9999999999988 6777888889999999999987632 2221 23446777777776643 245667777777
Q ss_pred ccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC
Q 046712 482 SSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539 (566)
Q Consensus 482 s~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 539 (566)
++|++. .+|. ...+++|++|+|++|.+++..++.+..+++|+.|++++|++.+..|
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 777776 4554 3456777777777777776666667777777777777777665444
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.6e-47 Score=406.71 Aligned_cols=475 Identities=16% Similarity=0.224 Sum_probs=250.1
Q ss_pred CcccCCCCCCCCCCCcCCC-----CC--Ccc------------cccccCCCCCcEEEEEcCCCccccccCccCcCCCCCC
Q 046712 1 MKSQLQDPLGVTSSWNNSI-----NL--CQW------------TGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLR 61 (566)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-----~~--~~~------------~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~ 61 (566)
|++++.|| +|+.+. .+ |.| .||.|... .+|..|+|+++++.+.+|+.|+++++|+
T Consensus 277 ~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~~L~~L~ 350 (876)
T 4ecn_A 277 IWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIGQLTELK 350 (876)
T ss_dssp HHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGGGCTTCC
T ss_pred HHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHhccccce
Confidence 46677777 787664 44 999 99999863 8999999999999999999999999999
Q ss_pred EEec-CCCcccccCCcccC---------------------------------------------------CCCCCCEEeC
Q 046712 62 SINL-PNNSFRGKIPHEVG---------------------------------------------------NLFRLQNLTL 89 (566)
Q Consensus 62 ~L~l-s~~~l~~~~~~~~~---------------------------------------------------~l~~L~~L~l 89 (566)
+|++ ++|.+.+..|.... ....++.+.+
T Consensus 351 ~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l 430 (876)
T 4ecn_A 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430 (876)
T ss_dssp EEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTT
T ss_pred EeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhcee
Confidence 9999 88877655332111 1111222222
Q ss_pred CC--CcCCCcCccccccCCCCcEEEcCCCcCCCC-----------------cchhcc--CCCCCCEEecccccCCCCCCc
Q 046712 90 TN--NYFLGKILTDLSHCSNLMKFEASNNKLEGE-----------------IPVKIS--NLLMLQILNIAENHLKGQLPA 148 (566)
Q Consensus 90 ~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~ 148 (566)
.. |.+++ .|..|.++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|.
T Consensus 431 ~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 431 GNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp TCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred ccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH
Confidence 22 33433 444455555555555555555531 444444 555555555555555445555
Q ss_pred cccCCCCCCEEEccCCc-Ccc-cCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCC--CCCCC
Q 046712 149 SIGNLSALQEIDVRGNR-LGG-RIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPL--DNGVN 224 (566)
Q Consensus 149 ~~~~l~~L~~L~l~~~~-i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~ 224 (566)
.++++++|++|++++|. +++ .+|..+..++ ..+..+++|++|++++|.+. .+|. .+. .
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~----------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~ 571 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLA----------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQ-K 571 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH----------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHT-T
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhh----------------hcccccCCccEEEeeCCcCC-ccCChhhhh-c
Confidence 55555555555555554 443 3444443333 00112224555555555444 4443 222 4
Q ss_pred CCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCC-CcEEECCCCccCCcCCCChhhhhhccCC
Q 046712 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN-LSRLNLGENNLGTGTTNDLDFITLLTNC 303 (566)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 303 (566)
+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+...+. .+..+
T Consensus 572 L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~-------~~~~~ 641 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN-------IFNAK 641 (876)
T ss_dssp CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS-------CCCTT
T ss_pred CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch-------hhhcc
Confidence 555555555555554 333 4555555555555555554 33334445555 5555555555543221 11122
Q ss_pred --CCCCEEEccCCeeeeecchhH---hh-hccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccccccc---
Q 046712 304 --TKLEVLDLHSNRFGGVLPFSL---AN-LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIG--- 374 (566)
Q Consensus 304 --~~L~~L~l~~~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--- 374 (566)
++|+.|++++|.+.+..|... .. ..++|+.|++++|.+....+..+..+++|+.|++++|.+.......+.
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence 235555555555543322110 00 012455555555555422222233556666666666655522222221
Q ss_pred ----CCCCCCEEEccCCcccccCCcccc--CCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhh
Q 046712 375 ----ELKSIQILFLNENFLRGTIPSSLG--NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI 448 (566)
Q Consensus 375 ----~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 448 (566)
++++|++|++++|.++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++|+
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------ 787 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------ 787 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------
T ss_pred ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------
Confidence 1225666666666655 4455444 55566666666665553 44445555555555554443
Q ss_pred cccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEe
Q 046712 449 ITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELD 528 (566)
Q Consensus 449 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 528 (566)
++++|++.+.+|..|..+++|++|+|++|.+. .+|..+. ++|+.|+
T Consensus 788 -------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~Ld 833 (876)
T 4ecn_A 788 -------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILD 833 (876)
T ss_dssp -------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEE
T ss_pred -------------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEE
Confidence 23345555555556666666666666666663 4555544 4666666
Q ss_pred CCCCccccccCccccccccCceeecccCcC
Q 046712 529 LSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558 (566)
Q Consensus 529 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 558 (566)
|++|++....+..+.....+..+.+.+|+.
T Consensus 834 Ls~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCCCCCCccChHHccccccchheeecCCCc
Confidence 666666655555444444444444444433
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-45 Score=391.47 Aligned_cols=539 Identities=22% Similarity=0.215 Sum_probs=406.2
Q ss_pred CCCCCCCCCCCcCCCC----CCccc----ccccCCCC---------CcEEEEEcCCCccccccCccCcCCCCCCEEecCC
Q 046712 5 LQDPLGVTSSWNNSIN----LCQWT----GVTCGHRR---------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPN 67 (566)
Q Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~---------~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~ 67 (566)
|.|+...++.|..... .|.+. .++|..+. ..+++|+|++|.|+...+.+|.++++|++|++++
T Consensus 6 ~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~ 85 (635)
T 4g8a_A 6 YKDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 85 (635)
T ss_dssp -------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC
Confidence 4577888888887753 35443 36687543 5799999999999998889999999999999999
Q ss_pred CcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCC-CC
Q 046712 68 NSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKG-QL 146 (566)
Q Consensus 68 ~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~ 146 (566)
|.+++..+++|.++++|++|++++|+++...+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..
T Consensus 86 N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~ 165 (635)
T 4g8a_A 86 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 165 (635)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC
Confidence 99997778899999999999999999998888889999999999999999997767779999999999999999874 46
Q ss_pred CccccCCCCCCEEEccCCcCcccCCcccccCCcc----cEeecccccceecCCcccCcccCceEecccccccccCCCCCC
Q 046712 147 PASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL----ISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNG 222 (566)
Q Consensus 147 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 222 (566)
|..++.+++|++|++++|.+++..+..+..+.++ ..++++.+.+....+.......++.+.+.++.....+.....
T Consensus 166 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~ 245 (635)
T 4g8a_A 166 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 245 (635)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHH
T ss_pred chhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhh
Confidence 7888999999999999999987777877766554 367788888887777666666677787777654332222222
Q ss_pred CCCCCCcEEEccccc------ccccCcccccccCCCCeeeccccccc---ccccccccCCCCCcEEECCCCccCCcCCCC
Q 046712 223 VNLPNLRYFSISGNN------LTGSLQDSLSNATNLQGLEINRNLFS---GKVSINFSRLQNLSRLNLGENNLGTGTTND 293 (566)
Q Consensus 223 ~~~~~L~~L~l~~~~------~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 293 (566)
..++.++...+..+. +.......+.....+....+..+... ......+....+++.+.+..+.+....
T Consensus 246 ~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--- 322 (635)
T 4g8a_A 246 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--- 322 (635)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---
T ss_pred cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc---
Confidence 355666655544322 11222233444445555554433222 122333556678888888877665432
Q ss_pred hhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccc--cccc
Q 046712 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG--TIPL 371 (566)
Q Consensus 294 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~ 371 (566)
.+.....++.|++.++.+....... ...++.+.+..+.+.... ....+++|+.+++++|.+.. ..+.
T Consensus 323 -----~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 323 -----DFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp -----GGGSCCCCSEEEEESCEESSCCCCB----CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred -----ccccchhhhhhhcccccccCcCccc----chhhhhcccccccCCCCc--ccccccccccchhhcccccccccccc
Confidence 2456678999999999877544322 367888999888776432 34568999999999998753 3445
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCC-CCCcCCCCCcEEEccCCcceeccchhhhhhcc
Q 046712 372 AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIIT 450 (566)
Q Consensus 372 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 450 (566)
.+..+.+|+++++..+... ..+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+....+..+.....
T Consensus 392 ~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp HHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred chhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence 5667889999999999887 455677889999999999887664443 55778999999999999998776666655555
Q ss_pred cceEEEccCCcc-cccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeC
Q 046712 451 LSVLLDLSDNLL-SGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDL 529 (566)
Q Consensus 451 ~l~~L~l~~~~~-~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 529 (566)
+ +.+++++|.. .+..+..|..+++|++|++++|++.+..|..|.++++|++|+|++|.++...+..|..+++|++|++
T Consensus 471 L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 471 L-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp C-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred h-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 5 9999999975 4457788999999999999999999888889999999999999999999888888999999999999
Q ss_pred CCCccccccCcccccc-ccCceeecccCcCc
Q 046712 530 SRNNLSGHIPQYLENL-SFLLFLNMSYNHFE 559 (566)
Q Consensus 530 ~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~ 559 (566)
++|++++..|+.+..+ ++|+.|++++|+++
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999999999888 68999999999665
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-46 Score=394.98 Aligned_cols=443 Identities=18% Similarity=0.248 Sum_probs=355.8
Q ss_pred CCCCcCCCCCCcc---cccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc---------------
Q 046712 12 TSSWNNSINLCQW---TGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK--------------- 73 (566)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~--------------- 73 (566)
.++|+.+.+||.| .||.|... .+|+.|+|+++++.+.+|.+|+++++|++|++++|.+...
T Consensus 57 ~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~ 135 (636)
T 4eco_A 57 GANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135 (636)
T ss_dssp -CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred CCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchH
Confidence 4589999999999 99999876 8999999999999999999999999999999999965200
Q ss_pred ------------------CCccc-------------------CCCCCCCEEeCC--CCcCCCcCccccccCCCCcEEEcC
Q 046712 74 ------------------IPHEV-------------------GNLFRLQNLTLT--NNYFLGKILTDLSHCSNLMKFEAS 114 (566)
Q Consensus 74 ------------------~~~~~-------------------~~l~~L~~L~l~--~~~l~~~~~~~~~~l~~L~~L~l~ 114 (566)
.|..+ .....++.+.+. +|.+++ .|..++++++|++|+++
T Consensus 136 ~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls 214 (636)
T 4eco_A 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214 (636)
T ss_dssp HHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEE
T ss_pred HHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECc
Confidence 00000 111123333333 456776 77789999999999999
Q ss_pred CCcCCCC-----------------cchhcc--CCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCc-Ccc-cCCcc
Q 046712 115 NNKLEGE-----------------IPVKIS--NLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNR-LGG-RIPST 173 (566)
Q Consensus 115 ~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~-~~~~~ 173 (566)
+|.+++. +|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..
T Consensus 215 ~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~ 294 (636)
T 4eco_A 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294 (636)
T ss_dssp SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH
T ss_pred CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH
Confidence 9999864 888888 99999999999999988999999999999999999998 887 78888
Q ss_pred cccC------CcccEeecccccceecCC--cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCccc
Q 046712 174 ISHV------RNLISFNVAYNQFSGMIP--PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDS 245 (566)
Q Consensus 174 l~~l------~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 245 (566)
+..+ ++|+.|++++|.+...+. .+..+++|++|++++|.+.+.+| .+ ..+++|++|++++|.+. ..+..
T Consensus 295 ~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~-~lp~~ 371 (636)
T 4eco_A 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQIT-EIPAN 371 (636)
T ss_dssp HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEE-ECCTT
T ss_pred HHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccc-cccHh
Confidence 8776 899999999999986666 68899999999999999988888 33 37889999999999988 66777
Q ss_pred ccccCC-CCeeecccccccccccccccCC--CCCcEEECCCCccCCcCCCChh-hhhhccCCCCCCEEEccCCeeeeecc
Q 046712 246 LSNATN-LQGLEINRNLFSGKVSINFSRL--QNLSRLNLGENNLGTGTTNDLD-FITLLTNCTKLEVLDLHSNRFGGVLP 321 (566)
Q Consensus 246 l~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~ 321 (566)
+..+++ |+.|++++|.+. ..+..+... ++|+.|++++|.+....+..+. .......+++|+.|++++|.+. ..|
T Consensus 372 l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp 449 (636)
T 4eco_A 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFP 449 (636)
T ss_dssp SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCC
T ss_pred hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCC
Confidence 888998 999999999988 455556554 4899999999998776552211 0011116679999999999998 555
Q ss_pred hhHhhhccCCcEEEccCCCCCCCcchhhhcc-------CCCCeecccCCccccccccccc--CCCCCCEEEccCCccccc
Q 046712 322 FSLANLSTTMTEIAIGSNQISDTIPDVIANL-------VNLNALGVESNQLAGTIPLAIG--ELKSIQILFLNENFLRGT 392 (566)
Q Consensus 322 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~ 392 (566)
..+....+.|++|++++|.++...+..+... ++|++|++++|.++ .+|..+. .+++|++|++++|.+++
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence 5555555899999999999984333333322 38999999999998 5666676 89999999999999996
Q ss_pred CCccccCCCCCCeEec------cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccC
Q 046712 393 IPSSLGNLTLLTQLIL------EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHF 466 (566)
Q Consensus 393 ~~~~~~~~~~L~~L~l------~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 466 (566)
+|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|..+. +.++.|++++|++....
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~---~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT---PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---TTCCEEECCSCTTCEEE
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh---CcCCEEECcCCCCcccc
Confidence 7888889999999999 45777888999999999999999999999 46676654 45699999999887544
Q ss_pred C
Q 046712 467 P 467 (566)
Q Consensus 467 ~ 467 (566)
.
T Consensus 604 ~ 604 (636)
T 4eco_A 604 L 604 (636)
T ss_dssp C
T ss_pred H
Confidence 3
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.8e-45 Score=379.49 Aligned_cols=469 Identities=16% Similarity=0.181 Sum_probs=384.3
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+.+++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 68999999999999998999999999999999999999888899999999999999999999888888999999999999
Q ss_pred CCCcCCC-CcchhccCCCCCCEEecccccCCCCCC-ccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccce
Q 046712 114 SNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLP-ASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFS 191 (566)
Q Consensus 114 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~ 191 (566)
++|.+++ ..+..+.++++|++|++++|...+.++ ..+..+++|++|++++|.+.+..|.++..+++|+.|+++++...
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999985 346688999999999999998544554 67999999999999999999889999999999999999999875
Q ss_pred ecCCc-ccCcccCceEecccccccccC--CCCCCCCCCCCcEEEcccccccccCc----ccccccCCCCeeecccccccc
Q 046712 192 GMIPP-IYNISSLQYIFIHTNRFHGSV--PLDNGVNLPNLRYFSISGNNLTGSLQ----DSLSNATNLQGLEINRNLFSG 264 (566)
Q Consensus 192 ~~~~~-l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~ 264 (566)
..... +..+++|++|++++|.+.+.. +......+++|+.|+++++.+.+..+ ..+..+++|+.+++++|.+.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 44442 346899999999999987532 33334467899999999998775332 345667899999999998765
Q ss_pred ccc------ccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccC
Q 046712 265 KVS------INFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGS 338 (566)
Q Consensus 265 ~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 338 (566)
... ..+..+++++.+++.++.+...... ..........++|+.|++++|.+. ..|..+....+.|++|++++
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS-CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhc-ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 321 2346778999999988876543210 000112334578999999999987 66766655569999999999
Q ss_pred CCCCCCcch---hhhccCCCCeecccCCccccccc--ccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccc
Q 046712 339 NQISDTIPD---VIANLVNLNALGVESNQLAGTIP--LAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNL 413 (566)
Q Consensus 339 ~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l 413 (566)
|.+.+..+. .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCc
Confidence 999876543 36788999999999999986532 45889999999999999998 6788888999999999999998
Q ss_pred cccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcc
Q 046712 414 QGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493 (566)
Q Consensus 414 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~ 493 (566)
. .++..+ .++|++|++++|++.+.. ..+ +.++.|++++|++. ..+. ...+++|+.|++++|++++..+..
T Consensus 423 ~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l-~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 423 R-VVKTCI--PQTLEVLDVSNNNLDSFS----LFL-PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp S-CCCTTS--CTTCSEEECCSSCCSCCC----CCC-TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred c-cccchh--cCCceEEECCCCChhhhc----ccC-ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence 7 344333 369999999999998643 233 34599999999998 4443 467899999999999999877888
Q ss_pred ccCCCCCcEEeCCCCcccccCC
Q 046712 494 LGGCTSLEYLGMQDNSFTISIP 515 (566)
Q Consensus 494 ~~~~~~L~~L~L~~n~~~~~~~ 515 (566)
+..+++|++|++++|++.+..+
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 9999999999999999876543
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-44 Score=374.56 Aligned_cols=466 Identities=17% Similarity=0.164 Sum_probs=377.8
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+++++|++++|.+++..+.+|+++++|++|++++|.+++..|.+|.++++|++|++++|.++......++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 88999999999999988899999999999999999999778889999999999999999998777777999999999999
Q ss_pred CCCcCCC-CcchhccCCCCCCEEecccccCCCCCCccccCCCCC----CEEEccCCcCcccCCcccccCCcccEeecccc
Q 046712 114 SNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL----QEIDVRGNRLGGRIPSTISHVRNLISFNVAYN 188 (566)
Q Consensus 114 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 188 (566)
++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+++| +++++++|.+.+..+..+... +|+.|++++|
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 9999986 368899999999999999999987777888888888 899999999997777777665 8999999887
Q ss_pred ccee--cCCcccCcccCceEecccccccc-----cCCCCCCCCCC--CCcEEEcccc-cccccCcccccccCCCCeeecc
Q 046712 189 QFSG--MIPPIYNISSLQYIFIHTNRFHG-----SVPLDNGVNLP--NLRYFSISGN-NLTGSLQDSLSNATNLQGLEIN 258 (566)
Q Consensus 189 ~~~~--~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~--~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~ 258 (566)
.... ....+..++.++...+....+.. .++...+..++ .++.+++.++ .+.+..+..+..+++|+.++++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 4321 11133455555555443322211 11222111222 3456666666 5566677788899999999999
Q ss_pred cccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccC
Q 046712 259 RNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGS 338 (566)
Q Consensus 259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 338 (566)
++.+.. .+..+..+ +|++|++++|.+...+. ..+++|+.|++++|.+....+. ...+.|++|++++
T Consensus 291 ~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~---------~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~ 356 (570)
T 2z63_A 291 SVTIER-VKDFSYNF-GWQHLELVNCKFGQFPT---------LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSR 356 (570)
T ss_dssp SCEECS-CCBCCSCC-CCSEEEEESCBCSSCCB---------CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCS
T ss_pred Cccchh-hhhhhccC-CccEEeeccCcccccCc---------ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcC
Confidence 998874 55566777 99999999998874433 3678999999999988765544 3458999999999
Q ss_pred CCCCCCc--chhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCC-ccccCCCCCCeEeccCccccc
Q 046712 339 NQISDTI--PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIP-SSLGNLTLLTQLILEVNNLQG 415 (566)
Q Consensus 339 ~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~ 415 (566)
|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 9987653 67788999999999999999865554 8999999999999999986655 578899999999999999998
Q ss_pred cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcccc
Q 046712 416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLG 495 (566)
Q Consensus 416 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~ 495 (566)
..+..+..+++|++|++++|.+.+ +..+..+..+++|++|++++|++.+..|..+.
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQE------------------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGG------------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cchhhhhcCCcCcEEECcCCcCcc------------------------ccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 888889999999999888887641 12345567788899999999998877788888
Q ss_pred CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC
Q 046712 496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539 (566)
Q Consensus 496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 539 (566)
.+++|++|++++|.+++..++.+..+++|+.|++++|++.+..|
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 89999999999999887777788889999999999998886655
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=366.55 Aligned_cols=455 Identities=19% Similarity=0.236 Sum_probs=262.1
Q ss_pred EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712 37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116 (566)
Q Consensus 37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 116 (566)
+++++++++++. +|..+. ++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578999999985 455454 89999999999998666678999999999999999988877888999999999999999
Q ss_pred cCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCcc--cEeecccccc--e
Q 046712 117 KLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL--ISFNVAYNQF--S 191 (566)
Q Consensus 117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~~--~ 191 (566)
+++ .+|.. .+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 988 56655 78899999999999875 467888999999999999988864 456677777 8888888877 3
Q ss_pred ecCC-cccCcc-cCceEecccccccccCCCCCCCCCCCCcEEEccccc-------ccccCcccccccCCCCeeecccccc
Q 046712 192 GMIP-PIYNIS-SLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNN-------LTGSLQDSLSNATNLQGLEINRNLF 262 (566)
Q Consensus 192 ~~~~-~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~ 262 (566)
+..+ .+..+. ....++++++.+.+.++......+++|+.+++++|. +.+..+ .+..+++|+.+++.++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 3332 333322 222445555555555554444455666666665553 222221 334444444444444433
Q ss_pred cccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHh----hhccCCcEEEccC
Q 046712 263 SGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLA----NLSTTMTEIAIGS 338 (566)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~ 338 (566)
.+.....+. . ....++|+.|++++|.+.+..|..+. ...+.|+.+++.+
T Consensus 233 ~~~~~~~~~--------------------------~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 233 TWNSFIRIL--------------------------Q-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp EHHHHHHHH--------------------------H-HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred CHHHHHHHH--------------------------H-HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 221110000 0 00123555555555555444433321 1113344444444
Q ss_pred CCCCCCcc-hhhhcc---CCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046712 339 NQISDTIP-DVIANL---VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414 (566)
Q Consensus 339 ~~~~~~~~-~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 414 (566)
+.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 361 (520)
T 2z7x_B 286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361 (520)
T ss_dssp CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred cce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence 443 122 222222 34555555555544221 1134455555555555555444444555555555555555544
Q ss_pred c--cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCc
Q 046712 415 G--KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPT 492 (566)
Q Consensus 415 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~ 492 (566)
+ .+|..+..+++|++|++++|.+.+.+|. ..+..+++|++|++++|.+.+..+.
T Consensus 362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK------------------------GDCSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp BHHHHHHHHTTCTTCCEEECCSSCCBCCGGG------------------------CSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred ccccchHHHhhCCCCCEEECCCCcCCccccc------------------------chhccCccCCEEECcCCCCCcchhh
Confidence 3 2223344444444444444444432222 2345556666666666665544444
Q ss_pred cccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCc-cccccccCceeecccCcCcc
Q 046712 493 TLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQ-YLENLSFLLFLNMSYNHFEG 560 (566)
Q Consensus 493 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~ 560 (566)
.+. ++|++|++++|.++ .+|.++..+++|++|++++|+++. +|. .+..+++|++|++++|++++
T Consensus 418 ~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 418 CLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcc
Confidence 332 45666666666665 455555566666666666666653 333 35556666666666665554
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-42 Score=362.87 Aligned_cols=367 Identities=18% Similarity=0.266 Sum_probs=269.8
Q ss_pred CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCC------C---------------------------cCccccc-
Q 046712 58 NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFL------G---------------------------KILTDLS- 103 (566)
Q Consensus 58 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~------~---------------------------~~~~~~~- 103 (566)
.+++.|+++++.+.+.+|.+++++++|++|++++|.+. + ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999651 1 0000000
Q ss_pred ------------------cCCCCcEEEcC--CCcCCCCcchhccCCCCCCEEecccccCCCC-----------------C
Q 046712 104 ------------------HCSNLMKFEAS--NNKLEGEIPVKISNLLMLQILNIAENHLKGQ-----------------L 146 (566)
Q Consensus 104 ------------------~l~~L~~L~l~--~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~ 146 (566)
....++.+.+. .|++++ +|..++++++|++|++++|.+.+. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 01112222222 467776 888999999999999999999975 9
Q ss_pred Ccccc--CCCCCCEEEccCCcCcccCCcccccCCcccEeeccccc-cee-cCC-cccCc------ccCceEecccccccc
Q 046712 147 PASIG--NLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQ-FSG-MIP-PIYNI------SSLQYIFIHTNRFHG 215 (566)
Q Consensus 147 ~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~-~l~~~------~~L~~L~l~~~~~~~ 215 (566)
|..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +.+ ..+ .+..+ ++|++|++++|.++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 99999 99999999999999999999999999999999999998 775 333 55554 99999999999998
Q ss_pred cCCC--CCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCC-CcEEECCCCccCCcCCC
Q 046712 216 SVPL--DNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN-LSRLNLGENNLGTGTTN 292 (566)
Q Consensus 216 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 292 (566)
.+|. .+. .+++|++|++++|.+.+..+ .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+...+..
T Consensus 319 ~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchh
Confidence 7777 454 89999999999999997677 8999999999999999998 56666888899 99999999998854431
Q ss_pred ChhhhhhccCCCCCCEEEccCCeeeeecchhHhh------hccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccc
Q 046712 293 DLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN------LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA 366 (566)
Q Consensus 293 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 366 (566)
.....+++|+.|++++|.+.+..|..+.. ..++|++|++++|.++...+..+..+++|++|++++|.++
T Consensus 396 -----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 396 -----FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp -----CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred -----hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 11123458999999999998766655431 1246677777777766433344455677777777777666
Q ss_pred ccccccccCCC-------CCCEEEccCCcccccCCcccc--CCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCc
Q 046712 367 GTIPLAIGELK-------SIQILFLNENFLRGTIPSSLG--NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNK 436 (566)
Q Consensus 367 ~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 436 (566)
......+.... +|++|++++|.++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|++++|+
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 33322332222 6666666666666 4555554 56666666666666654 55555555555555555543
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.3e-40 Score=349.50 Aligned_cols=510 Identities=18% Similarity=0.148 Sum_probs=390.6
Q ss_pred EEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcC
Q 046712 39 LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKL 118 (566)
Q Consensus 39 l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 118 (566)
.+=++.+++. +|..+. +++++|+|++|.|+...+.+|.++++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus 36 ~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 3444445553 343332 4899999999999977788999999999999999999988888999999999999999999
Q ss_pred CCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcc-cCCcccccCCcccEeecccccceecCC-c
Q 046712 119 EGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG-RIPSTISHVRNLISFNVAYNQFSGMIP-P 196 (566)
Q Consensus 119 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-~ 196 (566)
++..+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+.. ..|..+..+++|+.|++++|.+.+..+ .
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 97667789999999999999999996666779999999999999999874 467888999999999999999987765 4
Q ss_pred ccCcccC----ceEecccccccccCCCCCCCCCCCCcEEEcccccccc-cCcccccccCCCCeeecccccc------ccc
Q 046712 197 IYNISSL----QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG-SLQDSLSNATNLQGLEINRNLF------SGK 265 (566)
Q Consensus 197 l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~------~~~ 265 (566)
+..+..+ ..++++.+.+.. ++.... ....++.+++.++.... .....+..+..++...+..... ...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNF-IQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCE-ECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccchhhhhhhhhhhhcccCcccc-cCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 4444433 456777777763 333333 34456777877764431 2233455566666555433221 111
Q ss_pred ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCc
Q 046712 266 VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTI 345 (566)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 345 (566)
....+.....+....+..+....... .....+..+.+++.+.+.++.+....+.. ....++.|++.++.+....
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCEESSCC
T ss_pred cccccccccchhhhhhhhhhhccccc---chhhhhhhhcccccccccccccccccccc---cchhhhhhhcccccccCcC
Confidence 22223344444444443332211110 01123456678999999999887554322 2368999999999887543
Q ss_pred chhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccc--cCCccccCCCCCCeEeccCccccccCCCCCcC
Q 046712 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRG--TIPSSLGNLTLLTQLILEVNNLQGKIPPSNGN 423 (566)
Q Consensus 346 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 423 (566)
+ ..++.|+.+++.++...... ....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.... .+..+..
T Consensus 345 ~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~ 418 (635)
T 4g8a_A 345 T---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLG 418 (635)
T ss_dssp C---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTT
T ss_pred c---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccc
Confidence 3 34678999999998876432 34578999999999999853 345566778999999999998773 4566788
Q ss_pred CCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc-ccCCccccCCCCCcE
Q 046712 424 CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS-GEIPTTLGGCTSLEY 502 (566)
Q Consensus 424 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~-~~~~~~~~~~~~L~~ 502 (566)
+++|+.+++..+......+...+.....++.+++++|.+.+..+..+..+++|+.|++++|+.. ...|..|..+++|++
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 9999999999998876666555555556699999999999888899999999999999999754 357788999999999
Q ss_pred EeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCCC
Q 046712 503 LGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPIE 565 (566)
Q Consensus 503 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 565 (566)
|+|++|.+++..|.+|.++++|++|+|++|++++..|..|..+++|+.|++++|++++..|..
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 999999999888999999999999999999999888899999999999999999999988753
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=350.51 Aligned_cols=438 Identities=17% Similarity=0.196 Sum_probs=323.1
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++. .+.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEec
Confidence 789999999999998888899999999999999999998789999999999999999999984 4433 8999999999
Q ss_pred CCCcCCC-CcchhccCCCCCCEEecccccCCCCCCccccCCCCC--CEEEccCCcC--cccCCcccccCC-cccEeeccc
Q 046712 114 SNNKLEG-EIPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL--QEIDVRGNRL--GGRIPSTISHVR-NLISFNVAY 187 (566)
Q Consensus 114 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~i--~~~~~~~l~~l~-~L~~L~l~~ 187 (566)
++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+. ....+++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999986 467899999999999999999874 457778888 9999999999 777788887765 344567777
Q ss_pred ccceecCC--cccCcccCceEeccccc-------ccccCCCCCCCCCCCCcEEEcccccccccCcccc---cccCCCCee
Q 046712 188 NQFSGMIP--PIYNISSLQYIFIHTNR-------FHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSL---SNATNLQGL 255 (566)
Q Consensus 188 ~~~~~~~~--~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L 255 (566)
|.+.+... .+..++.|+.+++++|. +.+.++ .. ..+++|+.|+++++.+.+.....+ ...++|+++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG-GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hh-ccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 77765444 56689999999999886 444444 22 378999999999987764322211 124588888
Q ss_pred ecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc-hhHhhhc--cCCc
Q 046712 256 EINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANLS--TTMT 332 (566)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~--~~L~ 332 (566)
++++|.+.+..+..+... ....+++|+.++++++.+ ..| ..+.... ..++
T Consensus 253 ~l~~n~l~~~~p~~~~~~-------------------------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDY-------------------------SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEEESCCCCCCCCC-------------------------CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred EeecccccCccccchhhc-------------------------ccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence 888888775555444100 012334444455544444 222 2222211 3466
Q ss_pred EEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccc--cCCccccCCCCCCeEeccC
Q 046712 333 EIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRG--TIPSSLGNLTLLTQLILEV 410 (566)
Q Consensus 333 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~ 410 (566)
.|++++|.+.... .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ .++..+..+++|++|++++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 6666666554321 12467888888888888887777778888888888888888875 3445677888888888888
Q ss_pred ccccccCCC-CCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccccc
Q 046712 411 NNLQGKIPP-SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE 489 (566)
Q Consensus 411 ~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~ 489 (566)
|.+.+.+|. .+..+++|++|++++|.+.+..+. .+. ++|+.|++++|++. .
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------------------~l~--~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-------------------------CLP--PRIKVLDLHSNKIK-S 435 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG-------------------------SCC--TTCCEEECCSSCCC-C
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhh-------------------------hhc--ccCCEEECCCCccc-c
Confidence 888864554 466778888888888776533222 111 57888888888887 6
Q ss_pred CCccccCCCCCcEEeCCCCcccccCCcC-CcCCCCCCEEeCCCCccccc
Q 046712 490 IPTTLGGCTSLEYLGMQDNSFTISIPST-LSSLKSITELDLSRNNLSGH 537 (566)
Q Consensus 490 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~ 537 (566)
+|..+..+++|++|++++|.++. +|.. +..+++|++|++++|++.+.
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 77766678888888888888874 4544 77888888888888888753
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.1e-41 Score=349.16 Aligned_cols=460 Identities=18% Similarity=0.191 Sum_probs=260.1
Q ss_pred EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712 37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116 (566)
Q Consensus 37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 116 (566)
+++++++++++. +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 677777777775 333332 67777777777777555567777777777777777777666667777777777777777
Q ss_pred cCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCcc--cEeecccccceec
Q 046712 117 KLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNL--ISFNVAYNQFSGM 193 (566)
Q Consensus 117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L--~~L~l~~~~~~~~ 193 (566)
.++ .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.. ..+..+++| +.|++++|.+..
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~- 183 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHI- 183 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCC-
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccc-
Confidence 776 44444 66777777777777663 234566666677777776666653 223333333 555555554410
Q ss_pred CCcccCcccCceEecccccccccCCCCCCCCCC-CCcEEEcccccccccC-cccccccCCCCeeeccccccccccccccc
Q 046712 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLP-NLRYFSISGNNLTGSL-QDSLSNATNLQGLEINRNLFSGKVSINFS 271 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 271 (566)
.+..+.... .+. ..-.++++.|.+.... ...+..+++|+.+++++|...
T Consensus 184 --------------------~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-------- 234 (562)
T 3a79_B 184 --------------------KGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN-------- 234 (562)
T ss_dssp --------------------CSSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT--------
T ss_pred --------------------cccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc--------
Confidence 111111111 111 0112344444433211 112333444555555444210
Q ss_pred CCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhh--hccCCcEEEccCCCCCCCcchhh
Q 046712 272 RLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLAN--LSTTMTEIAIGSNQISDTIPDVI 349 (566)
Q Consensus 272 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~ 349 (566)
.... ......+..++.|+.+++.++.+.+.....+.. ..+.|++|++++|.+.+.+|..+
T Consensus 235 --------------~~~l----~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 296 (562)
T 3a79_B 235 --------------CQRL----MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296 (562)
T ss_dssp --------------HHHH----HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC
T ss_pred --------------cchH----HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh
Confidence 0000 001123444555555555555443221111110 11356666666666655555444
Q ss_pred -----hccCCCCeecccCCccccccccccc---CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCC
Q 046712 350 -----ANLVNLNALGVESNQLAGTIPLAIG---ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN 421 (566)
Q Consensus 350 -----~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 421 (566)
..++.|+.+++..+.+. .....+. ...+|++|++++|.+.... ....+++|++|++++|.+.+..+..+
T Consensus 297 ~~~~~~~L~~L~~~~~~~~~~~-~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 297 FTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp CCCCSCSCCEEEEEEEEECCCS-SCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred hhcccccchheehhhcccceee-cChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh
Confidence 33333444444444331 1111111 1245777777777664211 12456677777777777776666667
Q ss_pred cCCCCCcEEEccCCcceec--cchhhhhhcccceEEEccCCcccc-cCCcCccCCCCCCEEeCccccccccCCccccCCC
Q 046712 422 GNCQNLILLTTRKNKLSGI--VPRQLLRIITLSVLLDLSDNLLSG-HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCT 498 (566)
Q Consensus 422 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~ 498 (566)
..+++|++|++++|++.+. .+..+..+..+ +.|++++|.+.+ .....+..+++|++|++++|++.+..+..+. +
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred cccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 7777777777777776642 22334444444 777777777766 3334467778888888888887655554443 6
Q ss_pred CCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcc-ccccccCceeecccCcCccc
Q 046712 499 SLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQY-LENLSFLLFLNMSYNHFEGK 561 (566)
Q Consensus 499 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~ 561 (566)
+|++|++++|.++ .+|.++..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++.
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 7888888888877 56666667888888888888887 44444 77888888888888877654
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-40 Score=345.90 Aligned_cols=440 Identities=17% Similarity=0.184 Sum_probs=292.0
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+.+++|++++|.+++..+..|.++++|++|++++|.+++..|++|.++++|++|++++|.++.. +.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc--ccccCCEEEC
Confidence 7899999999999999889999999999999999999988899999999999999999999844 433 8999999999
Q ss_pred CCCcCCCC-cchhccCCCCCCEEecccccCCCCCCccccCCCCC--CEEEccCCcC--cccCCcccccCCc-ccEeeccc
Q 046712 114 SNNKLEGE-IPVKISNLLMLQILNIAENHLKGQLPASIGNLSAL--QEIDVRGNRL--GGRIPSTISHVRN-LISFNVAY 187 (566)
Q Consensus 114 ~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~i--~~~~~~~l~~l~~-L~~L~l~~ 187 (566)
++|++++. .|..+.++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+.. .-.+++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 99999853 457899999999999999999753 45555555 9999999998 7777777776541 11334555
Q ss_pred ccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccc----ccCcccccccCCCCeeeccccccc
Q 046712 188 NQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT----GSLQDSLSNATNLQGLEINRNLFS 263 (566)
Q Consensus 188 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~ 263 (566)
|.+..... ......+++|+.+++++|... ......+...++|+.+++.++.+.
T Consensus 206 n~~~~~~~-----------------------~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 206 NSLFSVQV-----------------------NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp SSCCCCCC-----------------------EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccchhhhh-----------------------hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 54433222 222223445555555554210 011223455666666666665543
Q ss_pred cccccc---ccCCCCCcEEECCCCccCCcCCCCh-hhhhhccCCCCCCEEEccCCeeeeecc-hhHhhh--ccCCcEEEc
Q 046712 264 GKVSIN---FSRLQNLSRLNLGENNLGTGTTNDL-DFITLLTNCTKLEVLDLHSNRFGGVLP-FSLANL--STTMTEIAI 336 (566)
Q Consensus 264 ~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~--~~~L~~L~l 336 (566)
...... ....++|++|++++|.+....+... . .....++.|+.+++..+.+ ..| ..+... ...+++|++
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~--~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT--YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC--CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhh--cccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 211110 1223477777777777663322110 0 0013344444444444444 222 222221 145777777
Q ss_pred cCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCccccc--CCccccCCCCCCeEeccCcccc
Q 046712 337 GSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT--IPSSLGNLTLLTQLILEVNNLQ 414 (566)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~l~ 414 (566)
++|.+.... ....+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 777664321 124567777777777777766666677777777777777777642 2345666777777777777776
Q ss_pred ccCCC-CCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcc
Q 046712 415 GKIPP-SNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTT 493 (566)
Q Consensus 415 ~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~ 493 (566)
+.+|. .+..+++|++|++++|.+.+ ..+..+. ++|+.|++++|++. .+|..
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~l~--~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTG-------------------------SVFRCLP--PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCG-------------------------GGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred CccChhhhcCcccCCEEECCCCCCCc-------------------------chhhhhc--CcCCEEECCCCcCc-ccChh
Confidence 53433 35566666666666665542 2222222 57888888888887 66666
Q ss_pred ccCCCCCcEEeCCCCcccccCCcC-CcCCCCCCEEeCCCCccccc
Q 046712 494 LGGCTSLEYLGMQDNSFTISIPST-LSSLKSITELDLSRNNLSGH 537 (566)
Q Consensus 494 ~~~~~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~ 537 (566)
+..+++|++|++++|.++ .+|.. +..+++|+.|++++|++.+.
T Consensus 469 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp TTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred hcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 668888888888888888 45554 88888888888888888754
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.2e-40 Score=349.08 Aligned_cols=321 Identities=21% Similarity=0.299 Sum_probs=227.8
Q ss_pred CCCCCcEEEcccccccccCcccccccCCCCeeeccccc-ccc-ccccccc-------CCCCCcEEECCCCccCCcCCCCh
Q 046712 224 NLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNL-FSG-KVSINFS-------RLQNLSRLNLGENNLGTGTTNDL 294 (566)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~ 294 (566)
.+++|++|++++|.+.+..+..+.++++|+.|++++|. +++ ..+..+. .+++|+.|++++|.+...+.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~--- 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA--- 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC---
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC---
Confidence 56667777777666666666666667777777777765 554 3333332 34477777777777663221
Q ss_pred hhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCC-CCeecccCCcccccccccc
Q 046712 295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVN-LNALGVESNQLAGTIPLAI 373 (566)
Q Consensus 295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~ 373 (566)
...+..+++|+.|++++|.+. .+| .+.. .++|+.|++++|.+. .+|..+..+++ |++|++++|.++ ..|..+
T Consensus 566 --~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 566 --SASLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp --HHHHTTCTTCCEEECTTSCCC-BCC-CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred --hhhhhcCCCCCEEECCCCCcc-cch-hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 014566777777777777766 444 3333 367777777777777 56666777777 888888888777 555655
Q ss_pred cCCCC--CCEEEccCCcccccCCcc---cc--CCCCCCeEeccCccccccCCCCC-cCCCCCcEEEccCCcceeccchhh
Q 046712 374 GELKS--IQILFLNENFLRGTIPSS---LG--NLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQL 445 (566)
Q Consensus 374 ~~~~~--L~~L~l~~n~~~~~~~~~---~~--~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~ 445 (566)
...+. |+.|++++|.+.+.++.. +. .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+. .+|..+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 55543 788888888776544321 11 3347788888888777 444433 36778888888888777 455544
Q ss_pred hhhcc-------cceEEEccCCcccccCCcCcc--CCCCCCEEeCccccccccCCccccCCCCCcEEeCCC------Ccc
Q 046712 446 LRIIT-------LSVLLDLSDNLLSGHFPTKVG--NLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD------NSF 510 (566)
Q Consensus 446 ~~~~~-------~l~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~------n~~ 510 (566)
+.... .++.|++++|.+. ..+..+. .+++|+.|++++|++.+ +|..+..+++|++|+|++ |.+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 44321 4588888888888 5666665 89999999999999995 788899999999999976 778
Q ss_pred cccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCccc
Q 046712 511 TISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK 561 (566)
Q Consensus 511 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 561 (566)
.+.+|.++..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++...
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 888999999999999999999999 57888765 6999999999988654
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.9e-37 Score=315.06 Aligned_cols=369 Identities=18% Similarity=0.200 Sum_probs=229.0
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc-CCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEE
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK-IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFE 112 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 112 (566)
+++++|++++|.+++..+..|+++++|++|++++|.+.+. .+.+|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 3455555555555555555555555555555555554422 234455555555555555555544455555555555555
Q ss_pred cCCCcCCCCcchh--ccCCCCCCEEecccccCCCCCCcc-ccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccc
Q 046712 113 ASNNKLEGEIPVK--ISNLLMLQILNIAENHLKGQLPAS-IGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQ 189 (566)
Q Consensus 113 l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~ 189 (566)
+++|.+++..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l------------ 177 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF------------ 177 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc------------
Confidence 5555554323322 445555555555555555433433 4455555555555555544444444433
Q ss_pred ceecCCcccCcccCceEecccccccccCCCC-------CCCCCCCCcEEEcccccccccCccccccc---CCCCeeeccc
Q 046712 190 FSGMIPPIYNISSLQYIFIHTNRFHGSVPLD-------NGVNLPNLRYFSISGNNLTGSLQDSLSNA---TNLQGLEINR 259 (566)
Q Consensus 190 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~ 259 (566)
....++.++++++.+.+..+.. ....+++|++|++++|.+.+..+..+... ++|+.+++++
T Consensus 178 ---------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 178 ---------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp ---------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred ---------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 1134444444444443211111 01145678888888887776555544433 6777787777
Q ss_pred ccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCC
Q 046712 260 NLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN 339 (566)
Q Consensus 260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 339 (566)
+....... ..+.+.......+ .-...++|+.|++++|.+.+..+..+... ++|++|++++|
T Consensus 249 ~~~~~~~~--------------~~~~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n 309 (455)
T 3v47_A 249 SYNMGSSF--------------GHTNFKDPDNFTF----KGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQN 309 (455)
T ss_dssp CTTTSCCT--------------TCCSSCCCCTTTT----GGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTS
T ss_pred cccccccc--------------chhhhccCccccc----ccccccCceEEEecCccccccchhhcccC-CCCCEEECCCC
Confidence 65432111 0011111111000 01134678888888888887766666554 78888888888
Q ss_pred CCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCC
Q 046712 340 QISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPP 419 (566)
Q Consensus 340 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 419 (566)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+.
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 88877777888899999999999999877788889999999999999999877788899999999999999999876666
Q ss_pred CCcCCCCCcEEEccCCcceeccc
Q 046712 420 SNGNCQNLILLTTRKNKLSGIVP 442 (566)
Q Consensus 420 ~~~~~~~L~~L~l~~~~~~~~~~ 442 (566)
.+..+++|++|++++|++.+..|
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhccCCcccEEEccCCCcccCCC
Confidence 77899999999999999887655
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-37 Score=310.56 Aligned_cols=372 Identities=18% Similarity=0.193 Sum_probs=204.2
Q ss_pred CEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecC-C-cccCcccCceEeccc
Q 046712 133 QILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMI-P-PIYNISSLQYIFIHT 210 (566)
Q Consensus 133 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~-~l~~~~~L~~L~l~~ 210 (566)
+.++.+++.+. .+|. + .++|++|++++|.+++..|..+..+++|++|++++|.+.... + .+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666666 5565 2 367888888888888767778888888888888887664222 2 445555555555555
Q ss_pred ccccccCCCCCCCCCCCCcEEEcccccccccCcc--cccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCC
Q 046712 211 NRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQD--SLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT 288 (566)
Q Consensus 211 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (566)
|.+.+..+..+. .+++|++|++++|.+++..+. .+..+++|++|++++|.+....+..
T Consensus 89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------- 148 (455)
T 3v47_A 89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS------------------- 148 (455)
T ss_dssp CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-------------------
T ss_pred CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc-------------------
Confidence 555433333322 455555555555554432211 2444445555555554444333322
Q ss_pred cCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh-ccCCcEEEccCCCCCCCcchh--------hhccCCCCeec
Q 046712 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL-STTMTEIAIGSNQISDTIPDV--------IANLVNLNALG 359 (566)
Q Consensus 289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~--------~~~l~~L~~L~ 359 (566)
.+..+++|+.|++++|.+.+..+..+... ...++.+++++|.+.+..+.. +..+++|++|+
T Consensus 149 ----------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 218 (455)
T 3v47_A 149 ----------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218 (455)
T ss_dssp ----------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred ----------ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEe
Confidence 13344444444444444444333333222 134555555555544332221 22446677777
Q ss_pred ccCCcccccccccccC---CCCCCEEEccCCcccccC----------Ccccc--CCCCCCeEeccCccccccCCCCCcCC
Q 046712 360 VESNQLAGTIPLAIGE---LKSIQILFLNENFLRGTI----------PSSLG--NLTLLTQLILEVNNLQGKIPPSNGNC 424 (566)
Q Consensus 360 l~~~~~~~~~~~~~~~---~~~L~~L~l~~n~~~~~~----------~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~ 424 (566)
+++|.+.+..+..+.. .++|+.|++++|...+.. ...+. ..++|+.|++++|.+.+..+..+..+
T Consensus 219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 298 (455)
T 3v47_A 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298 (455)
T ss_dssp CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred cCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC
Confidence 7777766555544433 266777777766543211 00111 12345555555555554445555555
Q ss_pred CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEe
Q 046712 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLG 504 (566)
Q Consensus 425 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~ 504 (566)
++|++|++++|. +.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 299 ~~L~~L~Ls~n~-------------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 299 TDLEQLTLAQNE-------------------------INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TTCCEEECTTSC-------------------------CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred CCCCEEECCCCc-------------------------ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 555555555554 4444445555666666666666666655555566666666666
Q ss_pred CCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCC
Q 046712 505 MQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 505 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 563 (566)
+++|.+++..|+++..+++|++|++++|++++..++.+..+++|+.|++++|++++..|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 66666665556666666666666666666665555555666666666666666666655
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-37 Score=311.13 Aligned_cols=407 Identities=20% Similarity=0.230 Sum_probs=174.7
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
..+++++++++.+ +.+|..++++++|++|++++|.+.+.+|.+++++++|+.+++++|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 3445555555555 34455555555555555555555545555555555544444443321 23556666
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++|.+++ +|. -.++|++|++++|.+.+ +|.. .++|++|++++|.+++ ++. .
T Consensus 79 ~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~---------------- 129 (454)
T 1jl5_A 79 NNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----L---------------- 129 (454)
T ss_dssp TTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----C----------------
T ss_pred cCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----C----------------
Confidence 6665552 222 12455555555555553 3322 2455555555554431 111 0
Q ss_pred CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
.++|++|++++|.+.+ +| . +..+++|++|++++|.+++ .+.. .++|++|++++|.+... + .+..+
T Consensus 130 ------~~~L~~L~L~~n~l~~-lp-~-~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l 194 (454)
T 1jl5_A 130 ------PPLLEYLGVSNNQLEK-LP-E-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNL 194 (454)
T ss_dssp ------CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTC
T ss_pred ------CCCCCEEECcCCCCCC-Cc-c-cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCC
Confidence 0344444444444442 33 1 2356666666666666553 2221 23666666666666542 2 35555
Q ss_pred CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccC
Q 046712 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV 353 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 353 (566)
++|+.|++++|.+...+. ..++|+.|+++ +|.+. .+|. +..++
T Consensus 195 ~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~-------------------------~n~l~-~lp~-~~~l~ 237 (454)
T 1jl5_A 195 PFLTAIYADNNSLKKLPD----------LPLSLESIVAG-------------------------NNILE-ELPE-LQNLP 237 (454)
T ss_dssp TTCCEEECCSSCCSSCCC----------CCTTCCEEECC-------------------------SSCCS-SCCC-CTTCT
T ss_pred CCCCEEECCCCcCCcCCC----------CcCcccEEECc-------------------------CCcCC-cccc-cCCCC
Confidence 666666666655543221 11344444444 44444 2332 44555
Q ss_pred CCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEcc
Q 046712 354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTR 433 (566)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 433 (566)
+|++|++++|++++ .+. ..++|++|++++|.+++ ++.. +++|++|++++|.+.+. +. ..++|++|+++
T Consensus 238 ~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~ 305 (454)
T 1jl5_A 238 FLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNAS 305 (454)
T ss_dssp TCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECC
T ss_pred CCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECc
Confidence 56666666655553 222 12456666666665552 2321 24566666666655531 11 11456666666
Q ss_pred CCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc-
Q 046712 434 KNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI- 512 (566)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~- 512 (566)
+|.+.+. ...+..++.|++++|.+.+ .+. .+++|+.|++++|.+. .+|. .+++|++|++++|.+++
T Consensus 306 ~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 306 SNEIRSL-----CDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp SSCCSEE-----CCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSC
T ss_pred CCcCCcc-----cCCcCcCCEEECCCCcccc-ccc---cCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcC
Confidence 6655531 1222344666666666654 222 2466777777777766 4444 35677777777777765
Q ss_pred -cCCcCCcCC-------------CCCCEEeCCCCcccc--ccCccccccccCceeecccCcCcccCCC
Q 046712 513 -SIPSTLSSL-------------KSITELDLSRNNLSG--HIPQYLENLSFLLFLNMSYNHFEGKVPI 564 (566)
Q Consensus 513 -~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 564 (566)
.+|.++..+ ++|+.|++++|++++ .+|. +|+.|.+.+|.+.+.+|.
T Consensus 373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp CCCCTTCCEEECCC------------------------------------------------------
T ss_pred CCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 456666555 788999999998885 4443 456677888888777663
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-36 Score=290.17 Aligned_cols=280 Identities=26% Similarity=0.412 Sum_probs=241.4
Q ss_pred CcccCCCCCCCCCCCcCCCCCCc--ccccccCCCC--CcEEEEEcCCCcccc--ccCccCcCCCCCCEEecCC-Cccccc
Q 046712 1 MKSQLQDPLGVTSSWNNSINLCQ--WTGVTCGHRR--QRVTGLDLRHQSVGG--VLSPFVGNLNFLRSINLPN-NSFRGK 73 (566)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~l~l~~~~i~~--~~~~~~~~l~~L~~L~ls~-~~l~~~ 73 (566)
||+++.||. ++++|..+++||. |.||.|.... .+|++|+++++.+++ .+|..|.++++|++|++++ |.+.+.
T Consensus 14 ~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~ 92 (313)
T 1ogq_A 14 IKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92 (313)
T ss_dssp HHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred HHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence 567788887 8999999889998 9999998665 799999999999998 8899999999999999995 899888
Q ss_pred CCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCC
Q 046712 74 IPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNL 153 (566)
Q Consensus 74 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 153 (566)
+|.+|.++++|++|++++|.+++..+..|.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 99999999999999999999988889999999999999999999998889999999999999999999988899999999
Q ss_pred C-CCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEE
Q 046712 154 S-ALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYF 231 (566)
Q Consensus 154 ~-~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 231 (566)
+ +|++|++++|.+.+..|..+..++ |+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.++. ...+++|++|
T Consensus 173 ~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L 249 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGL 249 (313)
T ss_dssp CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEE
T ss_pred hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEE
Confidence 8 999999999999988999998887 9999999999887666 667788888888888887755544 2357788888
Q ss_pred EcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCc
Q 046712 232 SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285 (566)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 285 (566)
++++|.+.+..+..+..+++|+.|++++|.+++..+.. ..+++|+.+++.+|+
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 88888777677777777778888888887777555543 566677777777665
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-35 Score=295.87 Aligned_cols=389 Identities=21% Similarity=0.275 Sum_probs=243.6
Q ss_pred CCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEee
Q 046712 105 CSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFN 184 (566)
Q Consensus 105 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 184 (566)
..+|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+.+|+.+++.+|.. .+++.|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46777777777777 46777777777777777777777767777777776653333332210 2345555
Q ss_pred cccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccc
Q 046712 185 VAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSG 264 (566)
Q Consensus 185 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 264 (566)
+++|.+.+.+. ..++|++|++++|.+++ +|. .+++|++|++++|.+++... ..++|++|++++|.+.+
T Consensus 78 l~~~~l~~lp~---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSSLPE---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSCCCS---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS
T ss_pred ecCCccccCCC---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC
Confidence 55555544332 12456666666666653 432 23667777777776653211 11567777777777765
Q ss_pred cccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC
Q 046712 265 KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT 344 (566)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 344 (566)
.+ .+..+++|++|++++|.+...+. ..++|+.|++++|.+.+ .| .+.. .+.|++|++++|.+.+
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~lp~----------~~~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKKLPD----------LPPSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLKK- 209 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCSS-
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcccCC----------CcccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCCc-
Confidence 33 47777777777777777665332 12478888888887775 33 2333 3778888888888775
Q ss_pred cchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCC
Q 046712 345 IPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNC 424 (566)
Q Consensus 345 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 424 (566)
+|.. .++|++|++++|.+. ..| .+..+++|++|++++|.+++ ++. .+++|++|++++|++.+ +|.. .
T Consensus 210 l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 210 LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---c
Confidence 3332 268999999999998 555 48899999999999999984 443 24799999999999885 4443 4
Q ss_pred CCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCC-CCCCEEeCccccccccCCccccCCCCCcEE
Q 046712 425 QNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNL-KNLVSLDISSNMFSGEIPTTLGGCTSLEYL 503 (566)
Q Consensus 425 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~-~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L 503 (566)
++|++|++++|.+.+.. ..++.++.|++++|.+.+.. .+ ++|+.|++++|++.+ +|.. +++|++|
T Consensus 277 ~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp TTCCEEECCSSCCSEES-----CCCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred CcCCEEECcCCccCccc-----CcCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 89999999999988631 22355699999999998532 33 589999999999984 5554 5899999
Q ss_pred eCCCCcccccCCcCCcCCCCCCEEeCCCCcccc--ccCcccccc-------------ccCceeecccCcCcc--cCCC
Q 046712 504 GMQDNSFTISIPSTLSSLKSITELDLSRNNLSG--HIPQYLENL-------------SFLLFLNMSYNHFEG--KVPI 564 (566)
Q Consensus 504 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~p~ 564 (566)
++++|.++ .+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|.
T Consensus 343 ~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 343 IASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred ECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 99999998 5666 47999999999999998 788888888 889999999999998 8885
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.6e-34 Score=288.12 Aligned_cols=214 Identities=22% Similarity=0.229 Sum_probs=130.0
Q ss_pred ccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccC
Q 046712 49 VLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISN 128 (566)
Q Consensus 49 ~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 128 (566)
..+..++++++|++|++++|.+++ +| ++..+++|++|++++|.+++. .+..+++|++|++++|.+++. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCC
Confidence 334456777888888888887774 34 577778888888888877654 267778888888888877743 3 677
Q ss_pred CCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEec
Q 046712 129 LLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFI 208 (566)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l 208 (566)
+++|++|++++|.+.+ ++ ++.+++|++|++++|.+++. .++.+++|+.|++++|...+.. .+..+++|++|++
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l 177 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEEC
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEEC
Confidence 7788888888877774 33 67777788888877777642 2566677777777666432222 2334444444444
Q ss_pred ccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCC
Q 046712 209 HTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGT 288 (566)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (566)
++|.+++ ++ +..+++|+.|++++|.++.. .+..+++|+.|++++|.+..
T Consensus 178 s~n~l~~-l~---------------------------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 178 SFNKITE-LD---------------------------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CSSCCCC-CC---------------------------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred CCCccce-ec---------------------------cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 4444432 22 33444455555555444432 24445555555555555544
Q ss_pred cCCCChhhhhhccCCCCCCEEEccCCeee
Q 046712 289 GTTNDLDFITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 289 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (566)
.+ +..+++|+.|++++|.+.
T Consensus 227 ip---------~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 227 ID---------VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CC---------CTTCTTCSEEECCSSCCS
T ss_pred cC---------ccccCCCCEEEeeCCcCC
Confidence 21 234455555555555554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-33 Score=285.62 Aligned_cols=344 Identities=26% Similarity=0.379 Sum_probs=177.3
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
.+++.|+++++.+... + .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 4556666666665532 2 255666666666666666532 22 5666666666666666554333 556666666666
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|++++ .+... ..+..+++|+.|++++|.+...
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCC
Confidence 6666653322 5566666666666666552 22 355666666666643 22211 2255556666666666554432
Q ss_pred CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
+.+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~--~~l~~l 242 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP---------------------------LGILTNLDELSLNGNQLKDI--GTLASL 242 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG---------------------------GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred -hhhccCCCCCEEEecCCccccccc---------------------------ccccCCCCEEECCCCCcccc--hhhhcC
Confidence 234444555555555554443222 33444444444444444322 123444
Q ss_pred CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccC
Q 046712 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLV 353 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 353 (566)
++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +. ..+.|+.|++++|.+.+..+ +..++
T Consensus 243 ~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--------LSGLTKLTELKLGANQISNISP--LA-GLTALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred CCCCEEECCCCccccchh--------hhcCCCCCEEECCCCccCcccc--cc-CCCccCeEEcCCCcccCchh--hcCCC
Confidence 555555555554433211 3444555555555555443322 11 22455555555555543322 45555
Q ss_pred CCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEcc
Q 046712 354 NLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTR 433 (566)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 433 (566)
+|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..| +..+++|+.|+++
T Consensus 310 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 66666666665554433 44555666666666655532 345555666666666666554443 5555666666666
Q ss_pred CCccee
Q 046712 434 KNKLSG 439 (566)
Q Consensus 434 ~~~~~~ 439 (566)
+|.+.+
T Consensus 384 ~n~~~~ 389 (466)
T 1o6v_A 384 DQAWTN 389 (466)
T ss_dssp CEEEEC
T ss_pred CCcccC
Confidence 665553
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-33 Score=284.22 Aligned_cols=348 Identities=27% Similarity=0.390 Sum_probs=261.6
Q ss_pred cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCE
Q 046712 55 GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI 134 (566)
Q Consensus 55 ~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 134 (566)
..+++++.|+++++.+. .+| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34567777777777776 344 36667777777777777765443 6777777777777777764433 667777777
Q ss_pred EecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 135 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 214 (566)
|++++|.+.+ ++. +..+++|++|++++|.+.+ + ..+..+++|+.|++++ .+ .
T Consensus 117 L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~-~~-----------------------~ 168 (466)
T 1o6v_A 117 LTLFNNQITD-IDP-LKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFGN-QV-----------------------T 168 (466)
T ss_dssp EECCSSCCCC-CGG-GTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEEE-SC-----------------------C
T ss_pred EECCCCCCCC-ChH-HcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecCC-cc-----------------------c
Confidence 7777777663 332 6677777777777776653 2 2356666666666532 11 1
Q ss_pred ccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCCh
Q 046712 215 GSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDL 294 (566)
Q Consensus 215 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 294 (566)
+ .+. ...+++|++|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+...
T Consensus 169 ~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----- 236 (466)
T 1o6v_A 169 D-LKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI----- 236 (466)
T ss_dssp C-CGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-----
T ss_pred C-chh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-----
Confidence 1 111 22677888888888877643 347888999999999999876554 67899999999999988764
Q ss_pred hhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccccccc
Q 046712 295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIG 374 (566)
Q Consensus 295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (566)
..+..+++|+.|++++|.+.+..+ + ...+.|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.
T Consensus 237 ---~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 237 ---GTLASLTNLTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred ---hhhhcCCCCCEEECCCCccccchh--h-hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence 246788999999999999986654 3 334899999999999986544 7889999999999999986544 78
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceE
Q 046712 375 ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVL 454 (566)
Q Consensus 375 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 454 (566)
.+++|++|++++|.+++..+ +..+++|++|++++|++.+. ..+..+++|+.|++++|++.+..| +..++.+ +.
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~ 379 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI-TQ 379 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC-CE
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC-CE
Confidence 99999999999999986544 77899999999999999864 468899999999999999987766 5555555 99
Q ss_pred EEccCCccccc
Q 046712 455 LDLSDNLLSGH 465 (566)
Q Consensus 455 L~l~~~~~~~~ 465 (566)
|++++|.+++.
T Consensus 380 L~l~~n~~~~~ 390 (466)
T 1o6v_A 380 LGLNDQAWTNA 390 (466)
T ss_dssp EECCCEEEECC
T ss_pred EeccCCcccCC
Confidence 99999999853
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=288.39 Aligned_cols=321 Identities=22% Similarity=0.261 Sum_probs=239.8
Q ss_pred ceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCC
Q 046712 204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283 (566)
Q Consensus 204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 283 (566)
+.++.++..++ .+|... .++++.|++++|.++...+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666665 566543 36899999999999988788899999999999999999888788899999999999999
Q ss_pred CccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCC
Q 046712 284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN 363 (566)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 363 (566)
|.+...+. ..+..+++|+.|++++|.+....+..+... ++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 90 n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 90 NRLKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp SCCCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CcCCccCc------ccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 98887665 456788999999999998887766655443 77888888888777666667777888888888888
Q ss_pred cccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccch
Q 046712 364 QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPR 443 (566)
Q Consensus 364 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 443 (566)
.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|++|++++|.+.+..+.
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 77766666677778888888888887766666777778888888887776666666655666777777777777644333
Q ss_pred hhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCC
Q 046712 444 QLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKS 523 (566)
Q Consensus 444 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~ 523 (566)
.+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.++...+..|..+++
T Consensus 243 ~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 243 AVRHLVYL-RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHTTCTTC-CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HhcCcccc-CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 44444333 77777777777666666777777777777777777666666777777777777777777555556667777
Q ss_pred CCEEeCCCCcccc
Q 046712 524 ITELDLSRNNLSG 536 (566)
Q Consensus 524 L~~L~l~~n~~~~ 536 (566)
|+.|++++|++..
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 7777777777663
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=283.78 Aligned_cols=319 Identities=17% Similarity=0.168 Sum_probs=187.0
Q ss_pred EeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeeccccc
Q 046712 182 SFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNL 261 (566)
Q Consensus 182 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 261 (566)
.++.+++.+..++..+ .+.++.|++++|.+.+..+. .+..+++|++|++++|.++...+..+..+++|+.|++++|.
T Consensus 15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3444444444333322 23566666666666533222 22356666666666666665555666666666666666666
Q ss_pred ccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCC
Q 046712 262 FSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQI 341 (566)
Q Consensus 262 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 341 (566)
+.......|..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+... ++|++|++++|.+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l 164 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLD------YMFQDLYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNL 164 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCC
T ss_pred CCccCcccccCCCCCCEEECCCCccccCCh------hHccccccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcC
Confidence 665555555666666666666666655443 334556666666666666665555444433 5666666666666
Q ss_pred CCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCC
Q 046712 342 SDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSN 421 (566)
Q Consensus 342 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 421 (566)
++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+....+..+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh
Confidence 65555556666666666666666665555556666666666666666554444444444566666666666653332345
Q ss_pred cCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCc
Q 046712 422 GNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLE 501 (566)
Q Consensus 422 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~ 501 (566)
..+++|+.|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRL-QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTC-CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred cCccccCeeECCCCcCCccChhhccccccC-CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 566666666666666665544444444443 6666666666666666666666666666666666644444556666666
Q ss_pred EEeCCCCccc
Q 046712 502 YLGMQDNSFT 511 (566)
Q Consensus 502 ~L~L~~n~~~ 511 (566)
+|++++|++.
T Consensus 324 ~L~l~~N~l~ 333 (477)
T 2id5_A 324 TLILDSNPLA 333 (477)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcc
Confidence 6666666655
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.1e-33 Score=275.40 Aligned_cols=351 Identities=17% Similarity=0.153 Sum_probs=216.7
Q ss_pred CCCCcCCCCCCc-ccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCC
Q 046712 12 TSSWNNSINLCQ-WTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLT 90 (566)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~ 90 (566)
++.|.....||. |.+..|.... +.+............-..++++++|+++++.++...+..+.++++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~-----~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD-----VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES-----CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee-----eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 678998888874 5555553211 1112211111111122456889999999998885555557888999999999
Q ss_pred CCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccC
Q 046712 91 NNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRI 170 (566)
Q Consensus 91 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 170 (566)
+|.++...+..|..+++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99988777778889999999999999988777777888999999999999888433344688899999999999888777
Q ss_pred CcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccC
Q 046712 171 PSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNAT 250 (566)
Q Consensus 171 ~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 250 (566)
+..+..+++|+.|++++|.+... .+..+++|++++++++.+ .. +...+
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l-------------------------~~-----~~~~~ 205 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLL-------------------------ST-----LAIPI 205 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCC-------------------------SE-----EECCS
T ss_pred hhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccc-------------------------cc-----cCCCC
Confidence 77788888888888888876543 233344444444444433 32 11223
Q ss_pred CCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccC
Q 046712 251 NLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTT 330 (566)
Q Consensus 251 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 330 (566)
+|+.+++++|.+..... ...++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+.
T Consensus 206 ~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~-------- 266 (390)
T 3o6n_A 206 AVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYH-------- 266 (390)
T ss_dssp SCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESG--------
T ss_pred cceEEECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcChh--------
Confidence 45555555555543322 2235677777777766543 2355667777777777766544332
Q ss_pred CcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccC
Q 046712 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEV 410 (566)
Q Consensus 331 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 410 (566)
.+..+++|++|++++|.+++ .+..+..+++|++|++++|.+. .++..+..+++|++|++++
T Consensus 267 -----------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 267 -----------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp -----------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCS
T ss_pred -----------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCC
Confidence 34444555555555555543 2333345556666666666555 3444455556666666666
Q ss_pred ccccccCCCCCcCCCCCcEEEccCCcceec
Q 046712 411 NNLQGKIPPSNGNCQNLILLTTRKNKLSGI 440 (566)
Q Consensus 411 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 440 (566)
|++... + +..+++|+.|++++|++...
T Consensus 328 N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 328 NSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred Ccccee-C--chhhccCCEEEcCCCCccch
Confidence 665532 1 45566666666666666543
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-32 Score=275.91 Aligned_cols=343 Identities=17% Similarity=0.195 Sum_probs=242.4
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+++++|+++++.+++. | .++.+++|++|++++|.+++ +| +..+++|++|++++|.+++. .++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEEC
Confidence 7889999999999975 4 69999999999999999985 44 89999999999999999875 2889999999999
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM 193 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
++|++++ ++ +..+++|++|++++|.+.+ + .++.+++|++|++++|...+.+ .+..+++|+.|++++|.+.+.
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 9999985 44 8899999999999999985 3 3889999999999999654444 578899999999999999875
Q ss_pred CCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712 194 IPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273 (566)
Q Consensus 194 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
. +..++.|+.|++++|.+++. + ...+++|++|++++|.+++. + +..+++|+.|++++|.+.+.. ...+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l 253 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTL 253 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred c--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC---HHHC
Confidence 4 78899999999999998853 2 34789999999999999863 3 788999999999999988654 4567
Q ss_pred CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchh-----
Q 046712 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDV----- 348 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----- 348 (566)
++|+.|+++.+.+ +.|++++|.+.+..|. ...+.|+.|++++|...+.+|..
T Consensus 254 ~~L~~L~l~~n~L--------------------~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 254 SKLTTLHCIQTDL--------------------LEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp TTCCEEECTTCCC--------------------SCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred CCCCEEeccCCCC--------------------CEEECCCCccCCcccc---cccccCCEEECCCCcccceeccCCCcce
Confidence 7888888776543 3444444443333321 11245555555555444333321
Q ss_pred ---hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC
Q 046712 349 ---IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ 425 (566)
Q Consensus 349 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 425 (566)
++.+++|++|++++|++++. .+..+++|+.|++++|.+++ ++.|..|++..|.+.+. ..+.
T Consensus 311 ~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~ 374 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTI 374 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEE
T ss_pred EechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceee
Confidence 22234455555555555432 14445555555555554442 13344444444444432 2333
Q ss_pred CCcEEEccCCcceeccch
Q 046712 426 NLILLTTRKNKLSGIVPR 443 (566)
Q Consensus 426 ~L~~L~l~~~~~~~~~~~ 443 (566)
.+..+++++|++++.+|.
T Consensus 375 ~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 375 TMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ECCCBCCBTTBEEEECCT
T ss_pred ecCccccccCcEEEEcCh
Confidence 444444444444444443
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=261.51 Aligned_cols=304 Identities=25% Similarity=0.355 Sum_probs=194.4
Q ss_pred CCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCC
Q 046712 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304 (566)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 304 (566)
+++|++|+++++.+... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..++
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--------~~~~~l~ 110 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--------SALQNLT 110 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--------GGGTTCT
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--------hHHcCCC
Confidence 34444455544444322 124445555555555555543322 45555555555555554432 1244555
Q ss_pred CCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEc
Q 046712 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384 (566)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 384 (566)
+|++|++++|.+.+..+ + ...+.|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCCCCCGG--G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred cCCEEECcCCcccCchh--h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 55555555555553322 1 223556666666664433333 35666777777777776664333 566677777777
Q ss_pred cCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG 464 (566)
Q Consensus 385 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 464 (566)
++|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..++. ++.|++++|.+.+
T Consensus 185 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 185 NYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQ-LTWLEIGTNQISD 257 (347)
T ss_dssp TTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CCEEECCSSCCCC
T ss_pred cCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCC-CCEEECCCCccCC
Confidence 77766532 22 5666777777777776664333 5666777777777777664333 333333 3777777777764
Q ss_pred cCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccc
Q 046712 465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544 (566)
Q Consensus 465 ~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 544 (566)
. ..+..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+++..++.+..+++|++|++++|++++..| +..
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred C--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 3 457889999999999999984 3 458889999999999999998888889999999999999999997666 889
Q ss_pred cccCceeecccCcCc
Q 046712 545 LSFLLFLNMSYNHFE 559 (566)
Q Consensus 545 l~~L~~L~l~~n~~~ 559 (566)
+++|++|++++|+++
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999886
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-31 Score=280.70 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=132.4
Q ss_pred CCCCCCCCCcCCCCCCc----ccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCC
Q 046712 7 DPLGVTSSWNNSINLCQ----WTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLF 82 (566)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~ 82 (566)
+++..++.|..+..||. |..+.|. .+++-........ ..-..+++++.+++++|.++...+..+.+++
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~------~~i~~~~~~~~~~--~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~ 75 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYD------VHIDMQTQDVYFG--FEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECS------CEECSSCCCCEES--CSSGGGCCCSEEEESSCEESEECTHHHHHCC
T ss_pred cccccccCCCCCCcCcccCcCceeEecC------ceecccccccccC--cccccCCCceEEEeeCCCCCCcCHHHHccCC
Confidence 45667889999988873 4443332 1111111111111 1123467888888888888755556677888
Q ss_pred CCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEcc
Q 046712 83 RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVR 162 (566)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 162 (566)
+|++|++++|.+++..+..|..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..++.+++|++|+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 88888888888887777788888888888888888887777777888888888888888874444446788888888888
Q ss_pred CCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712 163 GNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 163 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 214 (566)
+|.+.+..|..+..+++|+.|++++|.+.+. .+..++.|+.|++++|.+.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCCS
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCccc
Confidence 8888877777788888888888888776543 2334455555555555443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-31 Score=264.22 Aligned_cols=309 Identities=19% Similarity=0.194 Sum_probs=138.3
Q ss_pred cccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEE
Q 046712 200 ISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRL 279 (566)
Q Consensus 200 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 279 (566)
+++++.++++++.+. .+|...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 344555555555443 3333333344555555555555554444445555555555555555554444445555555555
Q ss_pred ECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeec
Q 046712 280 NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359 (566)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 359 (566)
++++|.+...+. ..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++. .+..+++|++++
T Consensus 123 ~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 123 VLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp ECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred ECCCCccCcCCH------HHhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCcc---ccccccccceee
Confidence 555555544333 223444555555555555544333333222 4455555555544432 133344455555
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCccee
Q 046712 360 VESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSG 439 (566)
Q Consensus 360 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 439 (566)
+++|.+.+ +...++|++|++++|.+... +. ..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred cccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 55544432 12223455555555544422 11 1124455555555544421 234444455555555554444
Q ss_pred ccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCc
Q 046712 440 IVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLS 519 (566)
Q Consensus 440 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 519 (566)
..+..+..+..+ +.|++++|.+.+. +..+..+++|++|++++|++. .+|..+..+++|++|++++|.++.. + +.
T Consensus 263 ~~~~~~~~l~~L-~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~ 336 (390)
T 3o6n_A 263 IMYHPFVKMQRL-ERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS 336 (390)
T ss_dssp EESGGGTTCSSC-CEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred cChhHccccccC-CEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence 434443333333 4444444444422 222234444444444444444 3333344444444444444444421 1 33
Q ss_pred CCCCCCEEeCCCCccc
Q 046712 520 SLKSITELDLSRNNLS 535 (566)
Q Consensus 520 ~l~~L~~L~l~~n~~~ 535 (566)
.+++|+.|++++|++.
T Consensus 337 ~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWD 352 (390)
T ss_dssp TTCCCSEEECCSSCEE
T ss_pred hhccCCEEEcCCCCcc
Confidence 4444444444444444
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.5e-31 Score=256.73 Aligned_cols=306 Identities=24% Similarity=0.361 Sum_probs=159.6
Q ss_pred cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCE
Q 046712 55 GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI 134 (566)
Q Consensus 55 ~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 134 (566)
..+++|++|+++++.+. .++ .+..+++|++|++++|.++...+ +..+++|++|++++|.+++ ++ .+.++++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCE
Confidence 45556666666666554 233 25556666666666665553322 5556666666666665553 22 3555666666
Q ss_pred EecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc
Q 046712 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 135 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 214 (566)
|++++|.+.+ ++. +..+++|++|++++|.... .+..+..+++|++|++++|.+..... +..+++|++|++++|.+.
T Consensus 115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred EECcCCcccC-chh-hccCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc
Confidence 6666665552 222 5556666666666654332 22335555555555555554443222 333344444444444333
Q ss_pred ccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCCh
Q 046712 215 GSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDL 294 (566)
Q Consensus 215 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 294 (566)
+ ++. ...+++|+.+++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|++|++++|.+...
T Consensus 191 ~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----- 258 (347)
T 4fmz_A 191 D-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI----- 258 (347)
T ss_dssp C-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred c-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-----
Confidence 1 111 1134445555554444442221 4444455555555544443222 34444444444444443321
Q ss_pred hhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccccccc
Q 046712 295 DFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIG 374 (566)
Q Consensus 295 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (566)
..+..+ ++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+.
T Consensus 259 ---~~~~~l-------------------------~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 259 ---NAVKDL-------------------------TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp ---GGGTTC-------------------------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred ---hhHhcC-------------------------CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 113333 4455555555554432 2456677777777777777766666777
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccc
Q 046712 375 ELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQ 414 (566)
Q Consensus 375 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~ 414 (566)
.+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777777777764433 666777777777777664
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.5e-31 Score=253.65 Aligned_cols=258 Identities=29% Similarity=0.444 Sum_probs=223.0
Q ss_pred CCCCEEEccCCeeee--ecchhHhhhccCCcEEEccC-CCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCC
Q 046712 304 TKLEVLDLHSNRFGG--VLPFSLANLSTTMTEIAIGS-NQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ 380 (566)
Q Consensus 304 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 380 (566)
.+++.|+++++.+.+ ..|..+... +.|++|++++ +.+.+.+|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777777776 566665554 7778888874 777777888888899999999999999888888888999999
Q ss_pred EEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC-CCcEEEccCCcceeccchhhhhhcccceEEEccC
Q 046712 381 ILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ-NLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD 459 (566)
Q Consensus 381 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 459 (566)
+|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ .|++|++++|.+.+..|..+.... ++.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcC
Confidence 999999999888888888999999999999999888888888887 999999999999888888887775 69999999
Q ss_pred CcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccC
Q 046712 460 NLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIP 539 (566)
Q Consensus 460 ~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 539 (566)
|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|.++..+++|++|++++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999988888999999999999999999855554 8889999999999999998999999999999999999999999999
Q ss_pred ccccccccCceeecccCc-CcccCCCCC
Q 046712 540 QYLENLSFLLFLNMSYNH-FEGKVPIEC 566 (566)
Q Consensus 540 ~~l~~l~~L~~L~l~~n~-~~~~~p~~~ 566 (566)
+. ..+++|+.+++++|+ +.|.-+..|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred CC-ccccccChHHhcCCCCccCCCCCCC
Confidence 87 889999999999998 666433456
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-30 Score=272.28 Aligned_cols=308 Identities=19% Similarity=0.204 Sum_probs=148.2
Q ss_pred CCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCC
Q 046712 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305 (566)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 305 (566)
++++.++++++.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+...++ ..+..+++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~ 124 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------HVFQNVPL 124 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH------HHHcCCCC
Confidence 444444444444444333344444555555555554444444444445555555555554444333 22344455
Q ss_pred CCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEcc
Q 046712 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN 385 (566)
Q Consensus 306 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 385 (566)
|+.|++++|.+....+..+.. .++|++|++++|.+.+..+..+..+++|++|++++|.+++.. +..+++|+.|+++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred CCEEEeeCCCCCCCCHHHhcc-CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 555555555444222222222 245555555555554444444555555555555555554321 3344555555555
Q ss_pred CCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc
Q 046712 386 ENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH 465 (566)
Q Consensus 386 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 465 (566)
+|.+++ +...++|+.|++++|.+....+. ..++|+.|++++|.+.+. ..+..++.+ +.|++++|.+.+.
T Consensus 201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L-~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 201 YNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGL-VEVDLSYNELEKI 269 (597)
T ss_dssp SSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCEE
T ss_pred cCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCC-CEEECCCCccCCC
Confidence 554431 12234455555555554422211 124555555555555432 223333332 5555555555555
Q ss_pred CCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccc
Q 046712 466 FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 545 (566)
Q Consensus 466 ~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 545 (566)
.+..|..+++|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.+... + +..+
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~ 344 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTH 344 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT
T ss_pred CHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhc
Confidence 5555555555555555555555 23444444555555555555555 3444555555555555555555532 1 3445
Q ss_pred ccCceeecccCcCc
Q 046712 546 SFLLFLNMSYNHFE 559 (566)
Q Consensus 546 ~~L~~L~l~~n~~~ 559 (566)
++|+.|++++|+++
T Consensus 345 ~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 345 HTLKNLTLSHNDWD 358 (597)
T ss_dssp CCCSEEECCSSCEE
T ss_pred CCCCEEEeeCCCCC
Confidence 55555555555554
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-33 Score=286.86 Aligned_cols=289 Identities=17% Similarity=0.147 Sum_probs=168.2
Q ss_pred CCCCEEecccccCCCCCCc-cccCCCCCCEEEccCCcCcc----cCCcccccCCcccEeecccccceecCC-cccCcccC
Q 046712 130 LMLQILNIAENHLKGQLPA-SIGNLSALQEIDVRGNRLGG----RIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSL 203 (566)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L 203 (566)
++|++|+++++.+...... .+..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+... .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~----- 77 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL----- 77 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH-----
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH-----
Confidence 4566677766666532222 24556666666666666652 233445555666666666655432111 000
Q ss_pred ceEecccccccccCCCCCCCCCCCCcEEEcccccccc----cCcccccccCCCCeeecccccccccccccc-----cCCC
Q 046712 204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTG----SLQDSLSNATNLQGLEINRNLFSGKVSINF-----SRLQ 274 (566)
Q Consensus 204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~ 274 (566)
.......++|++|++++|.++. ..+..+..+++|++|++++|.+.......+ ...+
T Consensus 78 ---------------~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 78 ---------------QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp ---------------HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred ---------------HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 0000011257777777777663 335566777788888888877764333222 2245
Q ss_pred CCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh----ccCCcEEEccCCCCCCC----cc
Q 046712 275 NLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL----STTMTEIAIGSNQISDT----IP 346 (566)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~ 346 (566)
+|++|++++|.+...... .+...+..+++|+.|++++|.+.+..+..+... .+.|++|++++|.++.. ++
T Consensus 143 ~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp CCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred cceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 788888888876653321 122445667888888888888765544444332 24778888888877653 35
Q ss_pred hhhhccCCCCeecccCCccccccc-----ccccCCCCCCEEEccCCccccc----CCccccCCCCCCeEeccCccccccC
Q 046712 347 DVIANLVNLNALGVESNQLAGTIP-----LAIGELKSIQILFLNENFLRGT----IPSSLGNLTLLTQLILEVNNLQGKI 417 (566)
Q Consensus 347 ~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~ 417 (566)
..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 566677888888888887764321 1223467777777777777643 3445555677777777777665332
Q ss_pred CCCCc-----CCCCCcEEEccCCcceec
Q 046712 418 PPSNG-----NCQNLILLTTRKNKLSGI 440 (566)
Q Consensus 418 ~~~~~-----~~~~L~~L~l~~~~~~~~ 440 (566)
+..+. ..++|++|++++|.+.+.
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchH
Confidence 22111 124666666666665543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9e-33 Score=281.13 Aligned_cols=382 Identities=20% Similarity=0.162 Sum_probs=267.4
Q ss_pred CCcccEeecccccceecCC--cccCcccCceEeccccccccc----CCCCCCCCCCCCcEEEcccccccccCccccc-cc
Q 046712 177 VRNLISFNVAYNQFSGMIP--PIYNISSLQYIFIHTNRFHGS----VPLDNGVNLPNLRYFSISGNNLTGSLQDSLS-NA 249 (566)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~ 249 (566)
.++|++|+++++.+..... .+..+++|++|++++|.+... ++... ..+++|++|++++|.+.+.....+. .+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 3578899999988765443 256788999999999987632 22222 2578999999999988754443332 23
Q ss_pred C----CCCeeecccccccc----cccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc
Q 046712 250 T----NLQGLEINRNLFSG----KVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP 321 (566)
Q Consensus 250 ~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 321 (566)
+ +|++|++++|.+.. ..+..+..+++|++|++++|.+.......+. .......++|++|++++|.+.+...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC-EGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH-HHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH-HHHhcCCCcceEEECCCCCCCHHHH
Confidence 3 69999999998874 3356678889999999999887543221111 0112345689999999998876543
Q ss_pred hhHhh---hccCCcEEEccCCCCCCCcchhhh-----ccCCCCeecccCCccccc----ccccccCCCCCCEEEccCCcc
Q 046712 322 FSLAN---LSTTMTEIAIGSNQISDTIPDVIA-----NLVNLNALGVESNQLAGT----IPLAIGELKSIQILFLNENFL 389 (566)
Q Consensus 322 ~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~ 389 (566)
..+.. ..+.|++|++++|.+....+..+. ..++|++|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 32222 237899999999987654333332 256899999999988754 355677789999999999988
Q ss_pred cccC-----CccccCCCCCCeEeccCcccccc----CCCCCcCCCCCcEEEccCCcceeccchhhhhh----cccceEEE
Q 046712 390 RGTI-----PSSLGNLTLLTQLILEVNNLQGK----IPPSNGNCQNLILLTTRKNKLSGIVPRQLLRI----ITLSVLLD 456 (566)
Q Consensus 390 ~~~~-----~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~ 456 (566)
.+.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+... .+.++.|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 6432 22233578999999999988753 45556678999999999998876555555443 23568999
Q ss_pred ccCCccccc----CCcCccCCCCCCEEeCccccccccCCccccC-----CCCCcEEeCCCCcccc----cCCcCCcCCCC
Q 046712 457 LSDNLLSGH----FPTKVGNLKNLVSLDISSNMFSGEIPTTLGG-----CTSLEYLGMQDNSFTI----SIPSTLSSLKS 523 (566)
Q Consensus 457 l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~-----~~~L~~L~L~~n~~~~----~~~~~l~~l~~ 523 (566)
+++|.+.+. .+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .++.++..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 999988765 3344567789999999999887654443432 6789999999998886 56777888899
Q ss_pred CCEEeCCCCccccccCcccc-----ccccCceeecccCcCcc
Q 046712 524 ITELDLSRNNLSGHIPQYLE-----NLSFLLFLNMSYNHFEG 560 (566)
Q Consensus 524 L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~ 560 (566)
|++|++++|++.+.....+. ....|+.|++.++.+..
T Consensus 400 L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 99999999988754222221 23357777777766554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.3e-28 Score=238.58 Aligned_cols=293 Identities=21% Similarity=0.247 Sum_probs=164.0
Q ss_pred CCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecc
Q 046712 59 FLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIA 138 (566)
Q Consensus 59 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 138 (566)
+++.++++++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555555555554 3443332 355555555555554444455555555555555555554445555555555555555
Q ss_pred cccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccccee--cCC-cccCcccCceEecccccccc
Q 046712 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG--MIP-PIYNISSLQYIFIHTNRFHG 215 (566)
Q Consensus 139 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~-~l~~~~~L~~L~l~~~~~~~ 215 (566)
+|.+. .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+ .+..+ +|++|++++|.++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 55555 3443333 455666666555554434445555666666665555532 222 23333 5666666666555
Q ss_pred cCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChh
Q 046712 216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLD 295 (566)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (566)
.+|... .++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+...+.
T Consensus 186 ~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~---- 258 (332)
T 2ft3_A 186 GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA---- 258 (332)
T ss_dssp SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT----
T ss_pred ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh----
Confidence 244332 2567777777777776666667777777777777777776666667777777777777777764433
Q ss_pred hhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccc--ccccccc
Q 046712 296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLA--GTIPLAI 373 (566)
Q Consensus 296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~ 373 (566)
.+..+++|+.|++++|.+++..+..+.... + ....+.|+.|++++|.+. +..+.++
T Consensus 259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-----------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVG-----------------F--GVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSS-----------------C--CSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred ---hhhcCccCCEEECCCCCCCccChhHccccc-----------------c--ccccccccceEeecCcccccccCcccc
Confidence 255667777777777777644433322110 0 011345666666666654 3445556
Q ss_pred cCCCCCCEEEccCCc
Q 046712 374 GELKSIQILFLNENF 388 (566)
Q Consensus 374 ~~~~~L~~L~l~~n~ 388 (566)
..+++|+.+++++|.
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 666666666666653
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.5e-28 Score=236.37 Aligned_cols=289 Identities=19% Similarity=0.228 Sum_probs=177.9
Q ss_pred CCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCC
Q 046712 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL 306 (566)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 306 (566)
+++.++++++.++. .+..+ .+.++.|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP------GAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT------TTTTTCTTC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH------HHhcCCCCC
Confidence 56667766666553 22222 2466677777776665555556666667777776666665443 335566666
Q ss_pred CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccC
Q 046712 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386 (566)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 386 (566)
++|++++|.+.. .|..+ .+.|+ +|++++|.+.+..+..+..+++|++|++++
T Consensus 103 ~~L~Ls~n~l~~-l~~~~---~~~L~------------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 103 ERLYLSKNQLKE-LPEKM---PKTLQ------------------------ELRVHENEITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CEEECCSSCCSB-CCSSC---CTTCC------------------------EEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred CEEECCCCcCCc-cChhh---ccccc------------------------EEECCCCcccccCHhHhcCCccccEEECCC
Confidence 666666666552 22211 13444 444444444444444444445555555555
Q ss_pred Ccccc--cCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712 387 NFLRG--TIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG 464 (566)
Q Consensus 387 n~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 464 (566)
|.+.. ..+..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~ 230 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL-AKLGLSFNSISA 230 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC-CEEECCSSCCCE
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC-CEEECCCCcCce
Confidence 54432 23334444555555555555544 2222221 455555555555555444444444443 666666666666
Q ss_pred cCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcC------CCCCCEEeCCCCcccc--
Q 046712 465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS------LKSITELDLSRNNLSG-- 536 (566)
Q Consensus 465 ~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~l~~n~~~~-- 536 (566)
..+..+..+++|++|++++|++. .+|..+..+++|++|++++|.++...+..|.. .+.|+.|++++|++..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 66667788899999999999998 78888889999999999999998766666643 3789999999998864
Q ss_pred ccCccccccccCceeecccCc
Q 046712 537 HIPQYLENLSFLLFLNMSYNH 557 (566)
Q Consensus 537 ~~~~~l~~l~~L~~L~l~~n~ 557 (566)
..|..+..+++|+.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 566788999999999999985
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.7e-28 Score=235.16 Aligned_cols=275 Identities=20% Similarity=0.202 Sum_probs=156.2
Q ss_pred CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEec
Q 046712 58 NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNI 137 (566)
Q Consensus 58 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 137 (566)
+++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 45666666666665444445566666666666666655555555666666666666666555 3333332 45555555
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCCcCcc--cCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccc
Q 046712 138 AENHLKGQLPASIGNLSALQEIDVRGNRLGG--RIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG 215 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 215 (566)
++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++| .++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-----------------------~l~- 184 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-----------------------NIT- 184 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-----------------------CCC-
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-----------------------ccc-
Confidence 5555554444445555555555555555532 33444445555555555444 443
Q ss_pred cCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChh
Q 046712 216 SVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLD 295 (566)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (566)
.++... .++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+...+.
T Consensus 185 ~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~---- 257 (330)
T 1xku_A 185 TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG---- 257 (330)
T ss_dssp SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT----
T ss_pred cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh----
Confidence 233222 2567777777777766666667777777777777777776666567777777777777777664432
Q ss_pred hhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccc--cccccc
Q 046712 296 FITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG--TIPLAI 373 (566)
Q Consensus 296 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~ 373 (566)
.+..+++|+.|++++|.+++..+..+... ......+.++.+++++|.+.. ..+..+
T Consensus 258 ---~l~~l~~L~~L~l~~N~i~~~~~~~f~~~-------------------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 258 ---GLADHKYIQVVYLHNNNISAIGSNDFCPP-------------------GYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp ---TTTTCSSCCEEECCSSCCCCCCTTSSSCS-------------------SCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred ---hhccCCCcCEEECCCCcCCccChhhcCCc-------------------ccccccccccceEeecCcccccccCcccc
Confidence 24566777777777777764433322110 001123556666666666542 344566
Q ss_pred cCCCCCCEEEccCCc
Q 046712 374 GELKSIQILFLNENF 388 (566)
Q Consensus 374 ~~~~~L~~L~l~~n~ 388 (566)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 666777777776663
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.3e-30 Score=248.23 Aligned_cols=256 Identities=18% Similarity=0.233 Sum_probs=167.1
Q ss_pred CcccCC-CCCCCCCCC----cCCCCCCcccccccCC--------CCCcEEEEEcCCCccccccCccCcCCCCCCEEecCC
Q 046712 1 MKSQLQ-DPLGVTSSW----NNSINLCQWTGVTCGH--------RRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPN 67 (566)
Q Consensus 1 ~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~ 67 (566)
|++++. ||.+|.+.| .....+|.|.|+.|.. ...++++|+++++.++ .+|..+.++++|++|++++
T Consensus 35 ~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~ 113 (328)
T 4fcg_A 35 WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDA 113 (328)
T ss_dssp HHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEES
T ss_pred HHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCC
Confidence 345564 888999999 4667889999998842 2367888888888887 5566677788888888888
Q ss_pred CcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccC---------CCCCCEEecc
Q 046712 68 NSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISN---------LLMLQILNIA 138 (566)
Q Consensus 68 ~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---------l~~L~~L~l~ 138 (566)
|.++ .+|..+.++++|++|++++|.++ ..+..+.++++|++|++++|.+.+.+|..+.. +++|++|+++
T Consensus 114 n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 114 AGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp SCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE
T ss_pred CCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc
Confidence 8887 77777888888888888888777 55667778888888888887666666665543 5666666666
Q ss_pred cccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCC
Q 046712 139 ENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVP 218 (566)
Q Consensus 139 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 218 (566)
+|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+. +|
T Consensus 192 ~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~-----------------------~p 246 (328)
T 4fcg_A 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN-----------------------YP 246 (328)
T ss_dssp EECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB-----------------------CC
T ss_pred CCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh-----------------------hH
Confidence 66665 55555666666666666666655 3444555555666665555544433 33
Q ss_pred CCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCc
Q 046712 219 LDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENN 285 (566)
Q Consensus 219 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 285 (566)
.... .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++++.+++..+.
T Consensus 247 ~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 247 PIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred HHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 3322 44555555555554444445455555555555555555555555555555555555555443
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.8e-28 Score=237.49 Aligned_cols=288 Identities=22% Similarity=0.250 Sum_probs=171.5
Q ss_pred CCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCC
Q 046712 227 NLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKL 306 (566)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L 306 (566)
.++.++++++.++. .+..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE------KAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG------GGSTTCTTC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH------hHhhCcCCC
Confidence 46666666665552 22222 2456666666666655555556666666666666666554433 345556666
Q ss_pred CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccc--cccccccCCCCCCEEEc
Q 046712 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAG--TIPLAIGELKSIQILFL 384 (566)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l 384 (566)
++|++++|.+.. .|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+ +|++|++
T Consensus 105 ~~L~L~~n~l~~-l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 105 QKLYISKNHLVE-IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CEEECCSSCCCS-CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CEEECCCCcCCc-cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 666666665552 222111 445555555555544434444455555555555554432 233334333 4555555
Q ss_pred cCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG 464 (566)
Q Consensus 385 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 464 (566)
++|.+++ +|..+. ++|++|++++|.+.+..+..+..+++| +.|++++|.+.+
T Consensus 180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L-------------------------~~L~L~~N~l~~ 231 (332)
T 2ft3_A 180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL-------------------------YRLGLGHNQIRM 231 (332)
T ss_dssp CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC-------------------------SCCBCCSSCCCC
T ss_pred cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCC-------------------------CEEECCCCcCCc
Confidence 5555442 222221 344444444444443333444444444 555555555555
Q ss_pred cCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcC------CCCCCEEeCCCCccc--c
Q 046712 465 HFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSS------LKSITELDLSRNNLS--G 536 (566)
Q Consensus 465 ~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~l~~n~~~--~ 536 (566)
..+..+..+++|++|++++|++. .+|..+..+++|++|++++|.++...+..|.. .+.|+.|++++|++. .
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 55556778889999999999998 78888889999999999999998766666654 367899999999887 5
Q ss_pred ccCccccccccCceeecccCc
Q 046712 537 HIPQYLENLSFLLFLNMSYNH 557 (566)
Q Consensus 537 ~~~~~l~~l~~L~~L~l~~n~ 557 (566)
..|..+..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 677888999999999999884
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.8e-31 Score=277.99 Aligned_cols=452 Identities=15% Similarity=0.105 Sum_probs=231.5
Q ss_pred CCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccc---ccCCcccC------------CCCCC
Q 046712 20 NLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFR---GKIPHEVG------------NLFRL 84 (566)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~---~~~~~~~~------------~l~~L 84 (566)
-|.+|.++.+... +.+.+.++ ....++..+..+++|++|+++++... +.+|..+. .+++|
T Consensus 40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 40 VCRRWFKIDSETR----EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp SCHHHHHHHHHHC----CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HhHHHHHhhhccc----cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 3448988865322 33444332 23344556678899999999886431 12332222 57788
Q ss_pred CEEeCCCCcCCCcCcccccc-CCC-CcEEEcCCCc-CCC-CcchhccCCCCCCEEecccccCCCC----CCccccCCCCC
Q 046712 85 QNLTLTNNYFLGKILTDLSH-CSN-LMKFEASNNK-LEG-EIPVKISNLLMLQILNIAENHLKGQ----LPASIGNLSAL 156 (566)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~~-l~~-L~~L~l~~~~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L 156 (566)
++|++++|.+++..+..+.. +++ |++|++++|. +.. .++.....+++|++|++++|.+.+. ++.....+++|
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 88888888766555555554 344 8888887775 211 1122234677888888888776543 23344567788
Q ss_pred CEEEccCCcCc----ccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccc---ccCCCCCCCCCCCCc
Q 046712 157 QEIDVRGNRLG----GRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFH---GSVPLDNGVNLPNLR 229 (566)
Q Consensus 157 ~~L~l~~~~i~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~ 229 (566)
++|++++|.+. ..++..+..+++|+.|++++|.+.+....+..+++|++|.++..... ...... ...+++|+
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~ 273 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN-LVFPRKLC 273 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC-CCCCTTCC
T ss_pred cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH-hhcccccc
Confidence 88888877775 22333445677788888777766654445556677777776542211 011111 11344555
Q ss_pred EEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEE
Q 046712 230 YFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVL 309 (566)
Q Consensus 230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 309 (566)
.++++++... ..+..+..+++|++|++++|.++.... ...+..+++|+.|
T Consensus 274 ~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~-----------------------------~~~~~~~~~L~~L 323 (592)
T 3ogk_B 274 RLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDH-----------------------------CTLIQKCPNLEVL 323 (592)
T ss_dssp EEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHH-----------------------------HHHHTTCTTCCEE
T ss_pred ccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHH-----------------------------HHHHHhCcCCCEE
Confidence 5555443211 223333444445555554444322111 1223444555555
Q ss_pred EccCCeeeeecchhHhhhccCCcEEEccC----------C-CCCCC-cchhhhccCCCCeecccCCcccccccccccC-C
Q 046712 310 DLHSNRFGGVLPFSLANLSTTMTEIAIGS----------N-QISDT-IPDVIANLVNLNALGVESNQLAGTIPLAIGE-L 376 (566)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~ 376 (566)
+++ +.+.+.....+....++|++|++.+ | .+++. .......+++|++|+++.+.+++.....+.. +
T Consensus 324 ~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 324 ETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402 (592)
T ss_dssp EEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred ecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence 554 2222222222222234455555552 2 22211 1112334566666666555555443333433 5
Q ss_pred CCCCEEEcc----CCccccc-----CCccccCCCCCCeEeccCcc--ccccCCCCCc-CCCCCcEEEccCCcceeccchh
Q 046712 377 KSIQILFLN----ENFLRGT-----IPSSLGNLTLLTQLILEVNN--LQGKIPPSNG-NCQNLILLTTRKNKLSGIVPRQ 444 (566)
Q Consensus 377 ~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~ 444 (566)
++|+.|+++ .+.+++. ++..+..+++|++|+++.|. +++.....+. .+++|++|++++|.+++.....
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 566666664 3334321 12224445666666665432 3322222222 2566666666666655433333
Q ss_pred hhhhcccceEEEccCCcccccCCc-CccCCCCCCEEeCccccccccCCccc-cCCCCCcEEeCCCC
Q 046712 445 LLRIITLSVLLDLSDNLLSGHFPT-KVGNLKNLVSLDISSNMFSGEIPTTL-GGCTSLEYLGMQDN 508 (566)
Q Consensus 445 ~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ls~~~l~~~~~~~~-~~~~~L~~L~L~~n 508 (566)
+....+.++.|++++|.+++.... .+..+++|+.|++++|++++.....+ ..++.+....+..+
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 323333346666766665433222 23457778888888888765433333 35666666655544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7.8e-27 Score=223.39 Aligned_cols=275 Identities=19% Similarity=0.183 Sum_probs=186.3
Q ss_pred cEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCC--cchhhhccCC
Q 046712 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDT--IPDVIANLVN 354 (566)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~ 354 (566)
+.++.+++.++..+.. -.++|+.|++++|.+....+..+.. .+.|++|++++|.+... .+..+..+++
T Consensus 10 ~~l~c~~~~l~~ip~~---------~~~~l~~L~L~~n~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG---------IPSSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSCCSSCCSC---------CCTTCCEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CEEEcCCCCcccCCCC---------CCCCCCEEECCCCccCccCHhHhhc-cccCCEEECCCCccCcccCcccccccccc
Confidence 4677777776665441 2257888888888877443333333 47888888888877632 2455667788
Q ss_pred CCeecccCCcccccccccccCCCCCCEEEccCCcccccCC-ccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEcc
Q 046712 355 LNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIP-SSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTR 433 (566)
Q Consensus 355 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 433 (566)
|++|++++|.+.+ .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 8888888888773 45557778888888888888774443 467778888888888888877777777788888888888
Q ss_pred CCccee-ccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712 434 KNKLSG-IVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512 (566)
Q Consensus 434 ~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~ 512 (566)
+|.+.+ ..+..+..+..+ +.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 159 ~n~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCccccccchhHHhhCcCC-CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 887765 345445444444 777777777776666777777777777777777775555567777777777777777776
Q ss_pred cCCcCCcCCC-CCCEEeCCCCccccccC--ccccccccCceeecccCcCcccCC
Q 046712 513 SIPSTLSSLK-SITELDLSRNNLSGHIP--QYLENLSFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 513 ~~~~~l~~l~-~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~p 563 (566)
..+..+..++ +|++|++++|++...-+ ....-+...+.+.+..+.+....|
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 6777777764 77777777777764311 112223344455555555555444
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7e-30 Score=268.34 Aligned_cols=398 Identities=13% Similarity=0.107 Sum_probs=262.8
Q ss_pred CcEEEEEcCCCccc---cccCccC------------cCCCCCCEEecCCCcccccCCcccCC-CC-CCCEEeCCCCc-CC
Q 046712 34 QRVTGLDLRHQSVG---GVLSPFV------------GNLNFLRSINLPNNSFRGKIPHEVGN-LF-RLQNLTLTNNY-FL 95 (566)
Q Consensus 34 ~~~~~l~l~~~~i~---~~~~~~~------------~~l~~L~~L~ls~~~l~~~~~~~~~~-l~-~L~~L~l~~~~-l~ 95 (566)
+++++|+++++... +..|..+ ..+++|++|++++|.+++..+..+.. ++ +|++|++++|. +.
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 67999999885321 1222222 27899999999999887665555655 34 49999999986 22
Q ss_pred Cc-CccccccCCCCcEEEcCCCcCCCC----cchhccCCCCCCEEecccccCC----CCCCccccCCCCCCEEEccCCcC
Q 046712 96 GK-ILTDLSHCSNLMKFEASNNKLEGE----IPVKISNLLMLQILNIAENHLK----GQLPASIGNLSALQEIDVRGNRL 166 (566)
Q Consensus 96 ~~-~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~i 166 (566)
.. ......++++|++|++++|.+.+. ++.....+++|++|+++.+.+. +.++..+..+++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 11 112234799999999999988655 3445567899999999999886 23445567899999999999988
Q ss_pred cccCCcccccCCcccEeecccccce----ecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccC
Q 046712 167 GGRIPSTISHVRNLISFNVAYNQFS----GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSL 242 (566)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 242 (566)
. .++..+..+++|+.|+++..... .....+..+++|+.+.+++.... .++... ..+++|++|++++|.++...
T Consensus 233 ~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 233 L-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF-PFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp G-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG-GGGGGCCEEEETTCCCCHHH
T ss_pred H-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH-hhcCCCcEEecCCCcCCHHH
Confidence 7 46788899999999999864322 12225678889999998875322 333333 36889999999999876433
Q ss_pred c-ccccccCCCCeeecccccccccccccccCCCCCcEEECCC-----------CccCCcCCCChhhhhhccCCCCCCEEE
Q 046712 243 Q-DSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE-----------NNLGTGTTNDLDFITLLTNCTKLEVLD 310 (566)
Q Consensus 243 ~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~l~~~~~L~~L~ 310 (566)
. ..+..+++|+.|++.++............+++|++|++++ +.++.. ........+++|+.|+
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMA 384 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEE
T ss_pred HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH-----HHHHHHhhCccCeEEE
Confidence 3 3467899999999984433333333346788999999983 233221 1223345688999999
Q ss_pred ccCCeeeeecchhHhhhccCCcEEEcc----CCCCCCC-----cchhhhccCCCCeecccCCc--ccccccccc-cCCCC
Q 046712 311 LHSNRFGGVLPFSLANLSTTMTEIAIG----SNQISDT-----IPDVIANLVNLNALGVESNQ--LAGTIPLAI-GELKS 378 (566)
Q Consensus 311 l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~-~~~~~ 378 (566)
++.+.+++.....+....++|++|++. .+.+++. ++..+..+++|++|+++.|. +++.....+ ..+++
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 988887766666666655788888886 3445542 23335567777777776543 443333333 23667
Q ss_pred CCEEEccCCccccc-CCccccCCCCCCeEeccCccccccC-CCCCcCCCCCcEEEccCCccee
Q 046712 379 IQILFLNENFLRGT-IPSSLGNLTLLTQLILEVNNLQGKI-PPSNGNCQNLILLTTRKNKLSG 439 (566)
Q Consensus 379 L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~~ 439 (566)
|++|++++|.+++. ++..+..+++|++|++++|.+++.. +.....+++|++|++++|++++
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 77777777776542 2333455666677766666654321 1222345556666666655543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.1e-27 Score=227.94 Aligned_cols=285 Identities=16% Similarity=0.172 Sum_probs=202.0
Q ss_pred CCcCCCCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCc
Q 046712 14 SWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY 93 (566)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~ 93 (566)
.|.....+|.|.++ ++.+++.++.. |..+. ++|++|++++|.+++..+.++.++++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-----------c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-----------CKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-----------EECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-----------eeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 34444555666553 45677777744 33333 588999999998886666688889999999999998
Q ss_pred CCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCc--cccCCCCCCEEEccCC-cCcccC
Q 046712 94 FLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPA--SIGNLSALQEIDVRGN-RLGGRI 170 (566)
Q Consensus 94 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~~~ 170 (566)
+++..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+. .++. .+..+++|++|++++| .+....
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC
Confidence 88777778888999999999999888655555888899999999998888 4544 6888899999999888 466555
Q ss_pred CcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccc---
Q 046712 171 PSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSL--- 246 (566)
Q Consensus 171 ~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--- 246 (566)
+..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+. .++......+++|+.|++++|.+++.....+
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccc
Confidence 6778888899999998888877655 6777888888888888764 3333333346788888888887765433322
Q ss_pred cccCCCCeeeccccccccc----ccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeec
Q 046712 247 SNATNLQGLEINRNLFSGK----VSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVL 320 (566)
Q Consensus 247 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 320 (566)
.....++.+++.++.+.+. .+..+..+++|+.|++++|.+...+. ..+..+++|+.|++++|++.+..
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcC
Confidence 2345666777776665432 33446677777777777777765544 23456777777777777776443
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.9e-26 Score=222.06 Aligned_cols=225 Identities=20% Similarity=0.300 Sum_probs=167.5
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
+.++.|+++++.+. .+|..+..+++|++|++++|.+. ..|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45555566655555 34555556666777777776666 55566666667777777777666 55666666677777777
Q ss_pred cCccccccCCCCCcC---------CCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEE
Q 046712 409 EVNNLQGKIPPSNGN---------CQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSL 479 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L 479 (566)
++|++.+.+|..+.. +++|++|++++|.+. .+|..+..+..+ +.|++++|.+.+ .+..+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEE
Confidence 766666566655543 777777777777776 556666655554 777888887774 45567888899999
Q ss_pred eCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCc
Q 046712 480 DISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559 (566)
Q Consensus 480 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 559 (566)
++++|++.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|++++|++.+.+|+.+.++++|+.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99998888888888888999999999998888888888999999999999999998899999999999999988876543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.5e-26 Score=218.89 Aligned_cols=280 Identities=19% Similarity=0.203 Sum_probs=178.0
Q ss_pred CeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeec--chhHhhhccC
Q 046712 253 QGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVL--PFSLANLSTT 330 (566)
Q Consensus 253 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~ 330 (566)
+.++.+++.++.... .+ .++|++|++++|.+...+. ..+..+++|+.|++++|.+.... +..+.. .++
T Consensus 10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPH------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTS 79 (306)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCT------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSC
T ss_pred CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCH------hHhhccccCCEEECCCCccCcccCccccccc-ccc
Confidence 355555555543332 12 2567777777777765544 33566777777777777665332 333333 367
Q ss_pred CcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccc-ccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046712 331 MTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIP-LAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 331 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 409 (566)
|++|++++|.+.. ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 7777777777663 44456667777777777777765443 456677777777777777766666667777777777777
Q ss_pred Cccccc-cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712 410 VNNLQG-KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 410 ~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~ 488 (566)
+|.+.+ ..+..+..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+.+..+..+..+++|+.|++++|++.+
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-CEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 777765 456667777777777777777776656666555544 777777777776666566777777777777777776
Q ss_pred cCCccccCCC-CCcEEeCCCCcccccCC--cCCcCCCCCCEEeCCCCccccccCccccc
Q 046712 489 EIPTTLGGCT-SLEYLGMQDNSFTISIP--STLSSLKSITELDLSRNNLSGHIPQYLEN 544 (566)
Q Consensus 489 ~~~~~~~~~~-~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 544 (566)
..+..+..++ +|++|++++|.+..... .....+...+.+.+..+.+....|+.+..
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 6666666663 77777777777664211 00112233444455555666556655544
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.6e-27 Score=230.44 Aligned_cols=280 Identities=18% Similarity=0.203 Sum_probs=218.6
Q ss_pred ccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh
Q 046712 248 NATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL 327 (566)
Q Consensus 248 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 327 (566)
.|+.....+.+++.++.... .+ .++|++|++++|.+...+. ..+..+++|+.|++++|.+.+..+..+...
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISN------SDLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp EECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCH------HHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 45556667778887775443 22 3689999999999887665 457789999999999999987777666554
Q ss_pred ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccccc-ccccCCCCCCEEEccCCc-ccccCCccccCCCCCCe
Q 046712 328 STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIP-LAIGELKSIQILFLNENF-LRGTIPSSLGNLTLLTQ 405 (566)
Q Consensus 328 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~ 405 (566)
+.|++|++++|.+++..+..+..+++|++|++++|.+++... ..+..+++|++|++++|. +....+..+..+++|++
T Consensus 100 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 -GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp -TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred -CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 899999999999987666668889999999999999985544 478889999999999984 66555678888999999
Q ss_pred EeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCcc---CCCCCCEEeCc
Q 046712 406 LILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVG---NLKNLVSLDIS 482 (566)
Q Consensus 406 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~~L~~L~ls 482 (566)
|++++|.+.+..+..+..+++|++|++++|.+. ..+..+....+.++.|++++|.+.+..+..+. ..+.++.++++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 999999998888889999999999999999985 44555555455569999999988865544332 45677888888
Q ss_pred cccccc----cCCccccCCCCCcEEeCCCCcccccCCcC-CcCCCCCCEEeCCCCccccccC
Q 046712 483 SNMFSG----EIPTTLGGCTSLEYLGMQDNSFTISIPST-LSSLKSITELDLSRNNLSGHIP 539 (566)
Q Consensus 483 ~~~l~~----~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~ 539 (566)
++.+.+ .+|..+..+++|++|++++|.++ .+|.. |..+++|++|++++|++.+..|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 877664 35666788888999999999888 45554 5788899999999998875543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.9e-26 Score=230.78 Aligned_cols=229 Identities=21% Similarity=0.235 Sum_probs=146.0
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
+.++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34445555555444444445555666666666666665555555556666666666666665444444555666666666
Q ss_pred cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~ 488 (566)
++|++....+..+..+++|+.|++++|...+.++...+...+.++.|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 666655444445556666666666654333333332222223336666666666533 246677788888888888877
Q ss_pred cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCc
Q 046712 489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559 (566)
Q Consensus 489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 559 (566)
..+..|.++++|++|++++|.++...+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|++.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66777888888888888888888777777888888888888888888666677778888888888888654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.3e-26 Score=228.96 Aligned_cols=227 Identities=21% Similarity=0.197 Sum_probs=128.8
Q ss_pred CCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 046712 330 TMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILE 409 (566)
Q Consensus 330 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 409 (566)
.++.|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 34444444444443333444555555555555555554444455555555555555555553333345555555555555
Q ss_pred CccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccccc
Q 046712 410 VNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGE 489 (566)
Q Consensus 410 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~ 489 (566)
+|++....+..+..+++|++|++++|...+.++...+...+.++.|++++|.+.+. + .+..+++|++|++++|++.+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCcc
Confidence 55555444444555555555555553322222222222222235555555555422 2 356667777777777777766
Q ss_pred CCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcC
Q 046712 490 IPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHF 558 (566)
Q Consensus 490 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 558 (566)
.+..|.++++|++|++++|.++...+..|..+++|+.|+|++|+++...+..+..+++|+.|++++|++
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 666777777777777777777766667777777777777777777766666667777777777777754
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-27 Score=228.87 Aligned_cols=248 Identities=18% Similarity=0.227 Sum_probs=179.9
Q ss_pred CCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEE
Q 046712 304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF 383 (566)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 383 (566)
++|+.|++++|.+.+..+..+... +.|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 344444444444443333333222 444444444444433222 566777888888888776432 337788888
Q ss_pred ccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccc
Q 046712 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS 463 (566)
Q Consensus 384 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 463 (566)
+++|.+++..+. .+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+....+.++.|++++|.+.
T Consensus 106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 888887744332 35678888888888876666677788888888888888887666666544445588888888887
Q ss_pred ccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc-cccCccc
Q 046712 464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS-GHIPQYL 542 (566)
Q Consensus 464 ~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l 542 (566)
+.. ....+++|++|++++|.+. .++..+..+++|++|++++|.++ .+|+.+..+++|+.|++++|++. +.+|..+
T Consensus 183 ~~~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EEE--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred ccc--cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 653 2335899999999999998 55666889999999999999999 57888999999999999999998 6788899
Q ss_pred cccccCceeecc-cCcCcccCCCCC
Q 046712 543 ENLSFLLFLNMS-YNHFEGKVPIEC 566 (566)
Q Consensus 543 ~~l~~L~~L~l~-~n~~~~~~p~~~ 566 (566)
..++.|+.++++ .+.++|..|.+|
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred hccccceEEECCCchhccCCchhcc
Confidence 999999999998 557788888776
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-25 Score=212.19 Aligned_cols=252 Identities=21% Similarity=0.168 Sum_probs=180.1
Q ss_pred CEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccC
Q 046712 307 EVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNE 386 (566)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 386 (566)
+.++.+++.+.. +|.. .++.+++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 577777777663 3332 246888888888888876666788888888888888888877777788888888888888
Q ss_pred Cc-ccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc
Q 046712 387 NF-LRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH 465 (566)
Q Consensus 387 n~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 465 (566)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence 86 665556778888888888888888887667778888888888888888775544445444444 7777777777766
Q ss_pred CCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccc
Q 046712 466 FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 545 (566)
Q Consensus 466 ~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 545 (566)
.+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..++.+..+++|+.|++++|++....+.. ...
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~ 247 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW 247 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHH
Confidence 6666777777777777777777666777777777777777777777555556777777777777777776432211 222
Q ss_pred ccCceeecccCcCcccCCC
Q 046712 546 SFLLFLNMSYNHFEGKVPI 564 (566)
Q Consensus 546 ~~L~~L~l~~n~~~~~~p~ 564 (566)
..++.+..+.+.+....|.
T Consensus 248 ~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHHCCSEECCCBEEESG
T ss_pred HHHHhcccccCccccCCch
Confidence 3455555666666655553
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.7e-26 Score=214.90 Aligned_cols=269 Identities=21% Similarity=0.203 Sum_probs=207.2
Q ss_pred cEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCC
Q 046712 277 SRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLN 356 (566)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 356 (566)
+.++.+++.+...+. ...++|+.|+++++.+.+..+..+.. .+.|++|++++|.+++..+..+..+++|+
T Consensus 14 ~~~~c~~~~l~~ip~---------~~~~~l~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV---------GIPAASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCSSCCT---------TCCTTCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred eEEEcCcCCcccCCc---------CCCCCceEEEeeCCcCCccCHHHccc-CCCCCEEECCCCccceeCHhhcCCccCCC
Confidence 667887777766543 12468999999999888766655544 37899999999988877777888899999
Q ss_pred eecccCCc-ccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712 357 ALGVESNQ-LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN 435 (566)
Q Consensus 357 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 435 (566)
+|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 99999997 77666778888899999999999988776778888899999999999988666667888999999999999
Q ss_pred cceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCC
Q 046712 436 KLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP 515 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 515 (566)
.+.+..+..+..+..+ +.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++....+
T Consensus 164 ~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 164 RISSVPERAFRGLHSL-DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cccccCHHHhcCcccc-CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 8886655556665555 889999999988888888889999999999999886555668888999999999998774322
Q ss_pred cCCcCCCCCCEEeCCCCccccccCccccc--cccCceeecccCc
Q 046712 516 STLSSLKSITELDLSRNNLSGHIPQYLEN--LSFLLFLNMSYNH 557 (566)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~ 557 (566)
. ......++.+....+.+....|+.+.. +..++..++.+|+
T Consensus 243 ~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 243 A-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp G-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred c-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 1 111133445556677777777776643 5667777777773
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.3e-28 Score=256.95 Aligned_cols=106 Identities=10% Similarity=0.147 Sum_probs=54.4
Q ss_pred CEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCC---Ccc------------hhccCCCCCCEEecccccCCCCCCcc
Q 046712 85 QNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEG---EIP------------VKISNLLMLQILNIAENHLKGQLPAS 149 (566)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~------------~~l~~l~~L~~L~l~~~~~~~~~~~~ 149 (566)
+.++++++... .....+..+++|++|+++++.... ..| .....+++|++|+++++.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666555322 222345667888888888764210 111 11234556666666666655444444
Q ss_pred cc-CCCCCCEEEccCC-cCccc-CCcccccCCcccEeecccccce
Q 046712 150 IG-NLSALQEIDVRGN-RLGGR-IPSTISHVRNLISFNVAYNQFS 191 (566)
Q Consensus 150 ~~-~l~~L~~L~l~~~-~i~~~-~~~~l~~l~~L~~L~l~~~~~~ 191 (566)
+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+.
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 43 4566666666665 33211 2222335566666666666544
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.1e-24 Score=220.16 Aligned_cols=228 Identities=21% Similarity=0.196 Sum_probs=137.8
Q ss_pred CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEec
Q 046712 58 NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNI 137 (566)
Q Consensus 58 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 137 (566)
+++++|++++|.+++..+.+|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45555555555555545555555555555555555555555555555555555555555555444444555555555555
Q ss_pred ccccCCCCCCccccCCCCCCEEEccCC-cCcccCCcccccCCcccEeecccccceecCCcccCcccCceEeccccccccc
Q 046712 138 AENHLKGQLPASIGNLSALQEIDVRGN-RLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGS 216 (566)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 216 (566)
++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++| .+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-----------------------~l~~- 210 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-----------------------NIKD- 210 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-----------------------CCSS-
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-----------------------cccc-
Confidence 555555333334555555555555552 222222223444455555555444 4432
Q ss_pred CCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhh
Q 046712 217 VPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDF 296 (566)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (566)
++. ...+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+...+.
T Consensus 211 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 283 (452)
T 3zyi_A 211 MPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH----- 283 (452)
T ss_dssp CCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-----
T ss_pred ccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-----
Confidence 221 2256777777777777777667777778888888888888777777777778888888888887776655
Q ss_pred hhhccCCCCCCEEEccCCeee
Q 046712 297 ITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 297 ~~~l~~~~~L~~L~l~~~~~~ 317 (566)
..+..+++|+.|++++|.+.
T Consensus 284 -~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 -DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -TSSTTCTTCCEEECCSSCEE
T ss_pred -HHhccccCCCEEEccCCCcC
Confidence 34567788888888888776
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.7e-24 Score=217.90 Aligned_cols=246 Identities=21% Similarity=0.212 Sum_probs=161.6
Q ss_pred EEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712 37 TGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116 (566)
Q Consensus 37 ~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 116 (566)
..++.++.+++. +|..+. +++++|++++|.++...+.+|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 345555555553 333332 57777777777777666677777777777777777777666677777777777777777
Q ss_pred cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCC-cCcccCCcccccCCcccEeecccccceecCC
Q 046712 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGN-RLGGRIPSTISHVRNLISFNVAYNQFSGMIP 195 (566)
Q Consensus 117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (566)
+++...+..+..+++|++|++++|.+....+..+..+++|++|++++| .+....+..|..+++|+.|++++|.+....
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 777555556777777777777777776555556777777777777763 333233335666667777766666554221
Q ss_pred cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCC
Q 046712 196 PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQN 275 (566)
Q Consensus 196 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 275 (566)
.+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++
T Consensus 202 ~~~-------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 202 NLT-------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp CCT-------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred ccC-------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 222 4556666666666666555666666667777777777666666666666777
Q ss_pred CcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeee
Q 046712 276 LSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFG 317 (566)
Q Consensus 276 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 317 (566)
|+.|++++|.+...+. ..+..+++|+.|++++|.+.
T Consensus 257 L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPH------DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCCCCCT------TTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCccCh------hHhccccCCCEEEcCCCCcc
Confidence 7777777776665554 34556677777777777665
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6e-27 Score=224.33 Aligned_cols=204 Identities=20% Similarity=0.193 Sum_probs=138.3
Q ss_pred ccCCCCeecccCCcccccccccc--cCCCCCCEEEccCCcccccCCccccCC-----CCCCeEeccCccccccCCCCCcC
Q 046712 351 NLVNLNALGVESNQLAGTIPLAI--GELKSIQILFLNENFLRGTIPSSLGNL-----TLLTQLILEVNNLQGKIPPSNGN 423 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~~~~~~ 423 (566)
.+++|++|++++|.+++..|..+ ..+++|++|++++|.+++. +..+..+ ++|++|++++|++.+..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45566666666666655555443 5566666666666666543 4444443 56666666666666555556666
Q ss_pred CCCCcEEEccCCcceec--cchhh--hhhcccceEEEccCCcccc---cCCcCccCCCCCCEEeCccccccccCC-cccc
Q 046712 424 CQNLILLTTRKNKLSGI--VPRQL--LRIITLSVLLDLSDNLLSG---HFPTKVGNLKNLVSLDISSNMFSGEIP-TTLG 495 (566)
Q Consensus 424 ~~~L~~L~l~~~~~~~~--~~~~~--~~~~~~l~~L~l~~~~~~~---~~~~~~~~~~~L~~L~ls~~~l~~~~~-~~~~ 495 (566)
+++|++|++++|++.+. .+..+ ..+ +.++.|++++|.+.+ .....+..+++|++|++++|.+.+..+ ..+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 66666666666665433 12222 222 333666666666652 222334577899999999999986554 4566
Q ss_pred CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCccc
Q 046712 496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK 561 (566)
Q Consensus 496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 561 (566)
.+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 7899999999999998 7787777 8999999999999865 66 88999999999999999874
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8.6e-28 Score=252.60 Aligned_cols=451 Identities=12% Similarity=0.089 Sum_probs=213.5
Q ss_pred CCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCccccc---CCc------------ccCCCCCC
Q 046712 20 NLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGK---IPH------------EVGNLFRL 84 (566)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~---~~~------------~~~~l~~L 84 (566)
-|.+|.++.. ...+.++++++... .....+..+++|++|+++++..... .|. .+..+++|
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 3447876632 12234454443222 2223456666677777766532111 111 12345667
Q ss_pred CEEeCCCCcCCCcCccccc-cCCCCcEEEcCCC-cCCCC-cchhccCCCCCCEEecccccCCCCCCccc----cCCCCCC
Q 046712 85 QNLTLTNNYFLGKILTDLS-HCSNLMKFEASNN-KLEGE-IPVKISNLLMLQILNIAENHLKGQLPASI----GNLSALQ 157 (566)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~ 157 (566)
++|++++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 7777777666554444454 4667777777666 33321 23333456677777777666553332222 3556777
Q ss_pred EEEccCCc--Ccc-cCCcccccCCcccEeecccc-cceecCCcccCcccCceEeccccc-------ccccCCCCCCCCCC
Q 046712 158 EIDVRGNR--LGG-RIPSTISHVRNLISFNVAYN-QFSGMIPPIYNISSLQYIFIHTNR-------FHGSVPLDNGVNLP 226 (566)
Q Consensus 158 ~L~l~~~~--i~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~ 226 (566)
+|++++|. +.. .++..+..+++|++|++++| .+.+....+..+++|++|.+..+. +.+ ++... ..++
T Consensus 188 ~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l-~~~~ 265 (594)
T 2p1m_B 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL-SGCK 265 (594)
T ss_dssp EEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH-HTCT
T ss_pred EEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH-hcCC
Confidence 77776665 211 11111234567777777666 222222244456666666654332 111 11111 2455
Q ss_pred CCcEE-EcccccccccCcccccccCCCCeeecccccccccccc-cccCCCCCcEEECCCCccCCcCCCChhhhhhccCCC
Q 046712 227 NLRYF-SISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSI-NFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304 (566)
Q Consensus 227 ~L~~L-~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 304 (566)
+|+.+ .+..... ...+..+..+++|++|++++|.++..... .+..+++|++|++.+| +.. .........++
T Consensus 266 ~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----~~l~~l~~~~~ 338 (594)
T 2p1m_B 266 ELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----AGLEVLASTCK 338 (594)
T ss_dssp TCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----HHHHHHHHHCT
T ss_pred CcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----HHHHHHHHhCC
Confidence 55555 2322211 12222233455666666666554322211 1345566666666554 211 01111222355
Q ss_pred CCCEEEccC---------CeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhh-ccCCCCeeccc--C----Cccccc
Q 046712 305 KLEVLDLHS---------NRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIA-NLVNLNALGVE--S----NQLAGT 368 (566)
Q Consensus 305 ~L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~ 368 (566)
+|+.|++.+ +.+++.....+....++|++|.+..+.+++.....+. .+++|++|+++ + +.+++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 666666622 2333222233333335666665555555443333332 35666666666 2 233311
Q ss_pred -----ccccccCCCCCCEEEccCCcccccCCccccC-CCCCCeEeccCccccccCCCCC-cCCCCCcEEEccCCcceecc
Q 046712 369 -----IPLAIGELKSIQILFLNENFLRGTIPSSLGN-LTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIV 441 (566)
Q Consensus 369 -----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~ 441 (566)
.+..+..+++|++|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 111244556666666655 443332223322 5666666666666543332222 34666666666666664333
Q ss_pred chhhhhhcccceEEEccCCcccccCCcCc-cCCCCCCEEeCcccc
Q 046712 442 PRQLLRIITLSVLLDLSDNLLSGHFPTKV-GNLKNLVSLDISSNM 485 (566)
Q Consensus 442 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ls~~~ 485 (566)
...+....+.++.|++++|+++......+ ..+|+|+...+..+.
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 33333323344666666666643333333 345666555555443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.1e-24 Score=225.29 Aligned_cols=288 Identities=20% Similarity=0.270 Sum_probs=161.3
Q ss_pred CCCCCCCCCcCCCCCCcccccc--------cCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCccc
Q 046712 7 DPLGVTSSWNNSINLCQWTGVT--------CGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEV 78 (566)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~ 78 (566)
|...+.+.|.+.+.||.|.+.. |.. .++++|++++++++ .+|..+. ++|++|++++|.++ .+|.
T Consensus 7 ~~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~-- 78 (622)
T 3g06_A 7 EYDAVWSAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA-- 78 (622)
T ss_dssp ---CHHHHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--
T ss_pred HHHHHHHHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--
Confidence 5667778899999999996532 321 35778888888887 4444444 78888888888777 4554
Q ss_pred CCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCE
Q 046712 79 GNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQE 158 (566)
Q Consensus 79 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 158 (566)
.+++|++|++++|.++.... .+++|++|++++|.++. +|. .+++|++|++++|.+. .+|.. +++|++
T Consensus 79 -~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~ 145 (622)
T 3g06_A 79 -LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQE 145 (622)
T ss_dssp -CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCE
T ss_pred -cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCE
Confidence 46778888888877764332 56777777777777763 333 4567777777777766 34442 366777
Q ss_pred EEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712 159 IDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238 (566)
Q Consensus 159 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (566)
|++++|.++ .+|. ..++|+.|++++|.+.... . .+++|+.|++++|.+
T Consensus 146 L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~---~-------------------------~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 146 LSVSDNQLA-SLPA---LPSELCKLWAYNNQLTSLP---M-------------------------LPSGLQELSVSDNQL 193 (622)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCC---C-------------------------CCTTCCEEECCSSCC
T ss_pred EECcCCcCC-CcCC---ccCCCCEEECCCCCCCCCc---c-------------------------cCCCCcEEECCCCCC
Confidence 777777665 2332 2244555555555444322 1 234555555555544
Q ss_pred cccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeee
Q 046712 239 TGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGG 318 (566)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 318 (566)
++. +. ..++|+.|++++|.+..... .+++|+.|++++|.+...+ ..+++|+.|++++|.+..
T Consensus 194 ~~l-~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----------~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 194 ASL-PT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----------VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp SCC-CC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCSC
T ss_pred CCC-CC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----------CCCCcCcEEECCCCCCCc
Confidence 421 11 12445555555555442221 1245555555555554322 123555555555555542
Q ss_pred ecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccc
Q 046712 319 VLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPL 371 (566)
Q Consensus 319 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 371 (566)
. |. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+.
T Consensus 256 l-p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 256 L-PM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C-CC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred C-Cc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 2 21 2244555555555554 3344455555555555555555544433
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-25 Score=225.99 Aligned_cols=236 Identities=17% Similarity=0.207 Sum_probs=182.2
Q ss_pred CCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEE
Q 046712 304 TKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILF 383 (566)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 383 (566)
++|+.|++++|.+.+..+..+... +.|+.|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 456666666666665544444333 566666666666654433 677888888888888887433 237888888
Q ss_pred ccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccc
Q 046712 384 LNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLS 463 (566)
Q Consensus 384 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 463 (566)
+++|.+++..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+....+.++.|++++|.+.
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888888754433 35788899999998887777788888899999999998888777777644445589999999888
Q ss_pred ccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc-cccCccc
Q 046712 464 GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS-GHIPQYL 542 (566)
Q Consensus 464 ~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l 542 (566)
+..+ +..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|.++..+++|+.|++++|++. +.+|..+
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 6633 3468999999999999994 5556889999999999999999 47888999999999999999998 5677888
Q ss_pred cccccCceeecc
Q 046712 543 ENLSFLLFLNMS 554 (566)
Q Consensus 543 ~~l~~L~~L~l~ 554 (566)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888999888886
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=4.8e-25 Score=211.63 Aligned_cols=239 Identities=18% Similarity=0.166 Sum_probs=197.8
Q ss_pred CCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEc
Q 046712 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFL 384 (566)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 384 (566)
+++..+++++.+... +..+....++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 345555666655422 33344445799999999999998888899999999999999999986554 889999999999
Q ss_pred cCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccc
Q 046712 385 NENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSG 464 (566)
Q Consensus 385 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~ 464 (566)
++|.+++. + ..++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+
T Consensus 88 s~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCE
T ss_pred cCCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCc
Confidence 99998732 2 348999999999999865543 36889999999999997766666666555 999999999998
Q ss_pred cCCcCc-cCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccc
Q 046712 465 HFPTKV-GNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543 (566)
Q Consensus 465 ~~~~~~-~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 543 (566)
..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|.++. ++..+..+++|++|++++|++. .+|..+.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh
Confidence 776666 4789999999999999854 33 3458999999999999995 5666999999999999999999 5788899
Q ss_pred ccccCceeecccCcCc
Q 046712 544 NLSFLLFLNMSYNHFE 559 (566)
Q Consensus 544 ~l~~L~~L~l~~n~~~ 559 (566)
.+++|+.|++++|+++
T Consensus 235 ~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECTTCCCB
T ss_pred cCCCCCEEEccCCCcc
Confidence 9999999999999998
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-23 Score=196.54 Aligned_cols=215 Identities=18% Similarity=0.229 Sum_probs=169.8
Q ss_pred CCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcC
Q 046712 19 INLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKI 98 (566)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 98 (566)
.++|.|.++.|.-. ...+.++++++.++. +|..+. +++++|++++|.++...+.+|.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 46899999988643 567789999999985 444443 68999999999998666778999999999999999998777
Q ss_pred ccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCC
Q 046712 99 LTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVR 178 (566)
Q Consensus 99 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~ 178 (566)
+..|.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 77788999999999999999877777788999999999999999877777788999999999999999866556688889
Q ss_pred cccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712 179 NLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238 (566)
Q Consensus 179 ~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (566)
+|+.|++++|.+....+ .+..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 99999998888776655 3555666666666666655 33333333555666666665544
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.7e-26 Score=221.18 Aligned_cols=265 Identities=18% Similarity=0.163 Sum_probs=157.3
Q ss_pred CCCcCCCCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccc-cCCcccC-------CCCCC
Q 046712 13 SSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRG-KIPHEVG-------NLFRL 84 (566)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~-~~~~~~~-------~l~~L 84 (566)
..|.....|+.+..+......++++++++++|.+ .+|..+... |++|++++|.+.. .+|..+. ++++|
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence 3566555665555443322235666777777777 444444433 7777777777742 3554444 67778
Q ss_pred CEEeCCCCcCCCcCcccc--ccCCCCcEEEcCCCcCCCCcchhccCC-----CCCCEEecccccCCCCCCccccCCCCCC
Q 046712 85 QNLTLTNNYFLGKILTDL--SHCSNLMKFEASNNKLEGEIPVKISNL-----LMLQILNIAENHLKGQLPASIGNLSALQ 157 (566)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 157 (566)
++|++++|.+++..+..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..++.+++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 888888777776666654 6777788888877777754 5555555 7777777777777766667777777777
Q ss_pred EEEccCCcCccc--CCccc--ccCCcccEeecccccceecCC----cccCcccCceEecccccccccCCCCCCCCCCCCc
Q 046712 158 EIDVRGNRLGGR--IPSTI--SHVRNLISFNVAYNQFSGMIP----PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLR 229 (566)
Q Consensus 158 ~L~l~~~~i~~~--~~~~l--~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 229 (566)
+|++++|.+.+. .+..+ ..+++|++|++++|.+..... .+..+++|++|++++|.+.+..+......+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 777777776533 22333 667777777777776653221 1224556666666666665444333333455666
Q ss_pred EEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccC
Q 046712 230 YFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLG 287 (566)
Q Consensus 230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 287 (566)
+|++++|.++ ..+..+. ++|+.|++++|.+++. +. +..+++|++|++++|.+.
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 6666666555 2233222 4555555555555433 22 444555555555555443
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=4.8e-23 Score=213.06 Aligned_cols=269 Identities=25% Similarity=0.285 Sum_probs=184.6
Q ss_pred CCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCC
Q 046712 226 PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTK 305 (566)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 305 (566)
.+++.|+++++.++ .++..+. ++|+.|++++|.++.... .+++|++|++++|.+...+. .+++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----------~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----------LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----------CCTT
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----------CCCC
Confidence 35788888888887 3444333 688888888888774333 56788888888888765432 5678
Q ss_pred CCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEcc
Q 046712 306 LEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLN 385 (566)
Q Consensus 306 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 385 (566)
|+.|++++|.+.+... .+++|+.|++++|.++. +|.. +++|++|++++|.+++. +. .+++|+.|+++
T Consensus 103 L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAY 169 (622)
T ss_dssp CCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECC
T ss_pred CCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECC
Confidence 8888888888775432 34778888888888775 3432 47788888888887743 32 34678888888
Q ss_pred CCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCccccc
Q 046712 386 ENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGH 465 (566)
Q Consensus 386 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 465 (566)
+|.++. ++ ..+++|+.|++++|.+.+ ++. ..++|+.|++++|.+.. ++. ..+.++.|++++|.+.+
T Consensus 170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~----~~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA----LPSGLKELIVSGNRLTS- 235 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-
T ss_pred CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC----CCCCCCEEEccCCccCc-
Confidence 888873 44 346778888888888773 333 24678888888887763 222 22445777777777764
Q ss_pred CCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccc
Q 046712 466 FPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENL 545 (566)
Q Consensus 466 ~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 545 (566)
.+ ..+++|+.|++++|.+. .+|. .+++|++|+|++|.++ .+|..+..+++|+.|+|++|++.+.+|..+..+
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 22 34567777777777776 4444 4577777777777777 567777777777777777777777666665554
Q ss_pred c
Q 046712 546 S 546 (566)
Q Consensus 546 ~ 546 (566)
+
T Consensus 308 ~ 308 (622)
T 3g06_A 308 T 308 (622)
T ss_dssp H
T ss_pred c
Confidence 4
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.5e-23 Score=197.25 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=143.7
Q ss_pred ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 046712 328 STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLI 407 (566)
Q Consensus 328 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 407 (566)
++.+++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35788888888888766666777888888888888888766666778888888888888888766667788888888888
Q ss_pred ccCccccccCCCCCcCCCCCcEEEccCCcceec-cchhhhhhcccceEEEccCCcccccCCcCccCCCCCC----EEeCc
Q 046712 408 LEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGI-VPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLV----SLDIS 482 (566)
Q Consensus 408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~----~L~ls 482 (566)
+++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+..+ +.|++++|.+.+..+..+..+++|+ +|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 888888766666677888888888888877653 35555554444 6666766666655555555444444 66666
Q ss_pred cccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccc
Q 046712 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537 (566)
Q Consensus 483 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 537 (566)
+|++.+..+..+. ..+|++|++++|.++...++.+..+++|+.|++++|++...
T Consensus 186 ~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 186 LNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 6666643333333 34666666666666654444556666666666666666643
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-23 Score=213.90 Aligned_cols=216 Identities=19% Similarity=0.175 Sum_probs=189.1
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 589999999999998888899999999999999999987655 889999999999999987432 2489999999
Q ss_pred cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCcc-CCCCCCEEeCcccccc
Q 046712 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVG-NLKNLVSLDISSNMFS 487 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ls~~~l~ 487 (566)
++|.+.+..+. .+++|+.|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..+. .+++|+.|++++|.+.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999866554 46899999999999998877777776666 9999999999988777775 7999999999999998
Q ss_pred ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCc
Q 046712 488 GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559 (566)
Q Consensus 488 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 559 (566)
+..+ +..+++|++|+|++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred cccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 5533 4468999999999999995 5556899999999999999999 47888999999999999999987
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.5e-22 Score=189.59 Aligned_cols=204 Identities=23% Similarity=0.271 Sum_probs=148.9
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
...+.++++++.++. +|..+. +++++|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 457788888888874 454332 67889999999888777677888889999999998888555556788888999999
Q ss_pred cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~ 488 (566)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.+.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 9888886666677888888888888888776555544444444 777777777766555556677777777777777765
Q ss_pred cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712 489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
..+..|..+++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 555556667777777777777765555556667777777777776653
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=9.5e-23 Score=191.79 Aligned_cols=204 Identities=22% Similarity=0.246 Sum_probs=121.9
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+.+++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35667777777666666656666777777777777666555556666677777777777666655566666677777777
Q ss_pred CCCcCCCCcchhccCCCCCCEEecccccCCC-CCCccccCCCCCCEEEccCCcCcccCCcccccCCccc----Eeecccc
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENHLKG-QLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI----SFNVAYN 188 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~~~ 188 (566)
++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 7666665444456666667777777666653 2466666666667777666666655455555555554 5556666
Q ss_pred cceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccc
Q 046712 189 QFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNL 238 (566)
Q Consensus 189 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (566)
.+....+......+|++|++++|.++ .++...+..+++|++|++++|.+
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCB
T ss_pred cccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcc
Confidence 55554443333334555555555444 23333333444444444444443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1e-22 Score=190.83 Aligned_cols=202 Identities=24% Similarity=0.220 Sum_probs=115.5
Q ss_pred ccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEE
Q 046712 351 NLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILL 430 (566)
Q Consensus 351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 430 (566)
.+++|++|++++|.+... ..+..+++|++|++++|.+++ ...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 344444444444444321 123444444444444444442 1234444444444444444443333334444455555
Q ss_pred EccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcc
Q 046712 431 TTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSF 510 (566)
Q Consensus 431 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~ 510 (566)
++++|.+.+..+..+..+..+ +.|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 555544443333333333332 5555555555545555566777788888888877755555667777888888888877
Q ss_pred cccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCCC
Q 046712 511 TISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVPI 564 (566)
Q Consensus 511 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 564 (566)
++..++.+..+++|+.|++++|++.+. +++|+.+++++|.++|.+|.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 766666677778888888888776632 45677777777777777775
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.6e-22 Score=186.60 Aligned_cols=199 Identities=21% Similarity=0.186 Sum_probs=140.7
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
+.++++++.++.++. +|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 678888888888874 44433 2678888888888887777778888888888888888874322 267788888888
Q ss_pred cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~ 488 (566)
++|.+. .+|..+..+++|++|++++|++.+..+..+..+..+ +.|++++|.+.+..+..|..+++|+.|++++|++..
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888887 566677778888888888888775554555554444 667777777766655666666777777777777664
Q ss_pred cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712 489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
..+..|..+++|++|++++|.++ .+|.++..+++|+.|++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44445566677777777777766 56666666667777777776665
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.4e-23 Score=200.28 Aligned_cols=251 Identities=16% Similarity=0.162 Sum_probs=164.7
Q ss_pred CCEEEccCCeeeeecchhHhhh-ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCccccc-ccccccCCCCCCEEE
Q 046712 306 LEVLDLHSNRFGGVLPFSLANL-STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGT-IPLAIGELKSIQILF 383 (566)
Q Consensus 306 L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ 383 (566)
++.++++++.+. +..+... .+.++.+++.++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555555555443 1122211 25666666666666554443 34567777777777776644 555666777777777
Q ss_pred ccCCcccccCCccccCCCCCCeEeccCc-ccccc-CCCCCcCCCCCcEEEccCC-cceec-cchhhhhhcccceEEEccC
Q 046712 384 LNENFLRGTIPSSLGNLTLLTQLILEVN-NLQGK-IPPSNGNCQNLILLTTRKN-KLSGI-VPRQLLRIITLSVLLDLSD 459 (566)
Q Consensus 384 l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~l~~L~l~~ 459 (566)
+++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++..++.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777776656666667777777777777 45432 3444566777777777777 66644 3444444542447888888
Q ss_pred C--ccc-ccCCcCccCCCCCCEEeCcccc-ccccCCccccCCCCCcEEeCCCCc-ccccCCcCCcCCCCCCEEeCCCCcc
Q 046712 460 N--LLS-GHFPTKVGNLKNLVSLDISSNM-FSGEIPTTLGGCTSLEYLGMQDNS-FTISIPSTLSSLKSITELDLSRNNL 534 (566)
Q Consensus 460 ~--~~~-~~~~~~~~~~~~L~~L~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~ 534 (566)
| .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 7 343 2334455678889999999988 666667778888999999999884 43333346778899999999988 3
Q ss_pred ccccCcccccc-ccCceeecccCcCcccCCC
Q 046712 535 SGHIPQYLENL-SFLLFLNMSYNHFEGKVPI 564 (566)
Q Consensus 535 ~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~ 564 (566)
. .+.+..+ .+|+.|++++|.+++..|.
T Consensus 284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 284 P---DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp C---TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred C---HHHHHHHHhhCcceEEecccCccccCC
Confidence 2 2344444 3477788899999988875
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.5e-23 Score=205.23 Aligned_cols=253 Identities=19% Similarity=0.170 Sum_probs=151.5
Q ss_pred EECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecc----hhHhhhccCCcEEEccCCCCCCCcchhhhcc--
Q 046712 279 LNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLP----FSLANLSTTMTEIAIGSNQISDTIPDVIANL-- 352 (566)
Q Consensus 279 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-- 352 (566)
++++++.+....+ ..+...++|+.|++++|.+.+..+ ..+...+..|++|++++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 3 YKLTLHPGSNPVE------EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EECCCCTTCCHHH------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred cccccccchHHHH------HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 4566665554322 334445558888888888876655 3343332378888888888776656555554
Q ss_pred ---CCCCeecccCCccccccccc----ccCC-CCCCEEEccCCcccccCCcc----ccC-CCCCCeEeccCccccccCCC
Q 046712 353 ---VNLNALGVESNQLAGTIPLA----IGEL-KSIQILFLNENFLRGTIPSS----LGN-LTLLTQLILEVNNLQGKIPP 419 (566)
Q Consensus 353 ---~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~----~~~-~~~L~~L~l~~~~l~~~~~~ 419 (566)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.+..+.
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 77888888888877555443 3334 67888888888876544433 233 25778888887777643322
Q ss_pred ----CCcCCC-CCcEEEccCCcceeccchhhhhh----cccceEEEccCCcccccCC----cCccC-CCCCCEEeCcccc
Q 046712 420 ----SNGNCQ-NLILLTTRKNKLSGIVPRQLLRI----ITLSVLLDLSDNLLSGHFP----TKVGN-LKNLVSLDISSNM 485 (566)
Q Consensus 420 ----~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~ls~~~ 485 (566)
.+..++ +|++|++++|.+.+..+..+... +..++.|++++|.+.+... ..+.. .++|++|++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 223343 77777777777765555444332 2244677777776664322 22323 3467777777776
Q ss_pred ccccCC----ccccCCCCCcEEeCCCCcccc-------cCCcCCcCCCCCCEEeCCCCccccc
Q 046712 486 FSGEIP----TTLGGCTSLEYLGMQDNSFTI-------SIPSTLSSLKSITELDLSRNNLSGH 537 (566)
Q Consensus 486 l~~~~~----~~~~~~~~L~~L~L~~n~~~~-------~~~~~l~~l~~L~~L~l~~n~~~~~ 537 (566)
+.+..+ ..+..+++|++|++++|.+.. .+++.+..+++|+.||+++|++...
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 664332 234556667777777776332 1234556666677777777766644
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.2e-21 Score=181.71 Aligned_cols=208 Identities=20% Similarity=0.242 Sum_probs=115.4
Q ss_pred CcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCC
Q 046712 54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ 133 (566)
Q Consensus 54 ~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 133 (566)
+..+++|+.|++++|.++ .+ ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 345555666666665554 22 2355556666666666655432 2455556666666666665544444455566666
Q ss_pred EEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEeccccc
Q 046712 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNR 212 (566)
Q Consensus 134 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~ 212 (566)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666666554444445556666666666666554444445556666666666665554444 23455666666666666
Q ss_pred ccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCC
Q 046712 213 FHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRL 273 (566)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 273 (566)
+.+ ++...+..+++|+.|++++|.+. ..++.|+.++++.|.+.+..+..+..+
T Consensus 193 l~~-~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 193 LKS-VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCc-cCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 553 23233335666666666666543 224556666666666665555544433
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=190.73 Aligned_cols=231 Identities=18% Similarity=0.191 Sum_probs=159.9
Q ss_pred CCCCEEEccCCeeeeecchhHhh--hccCCcEEEccCCCCCCCcchhh--hccCCCCeecccCCccccccc----ccccC
Q 046712 304 TKLEVLDLHSNRFGGVLPFSLAN--LSTTMTEIAIGSNQISDTIPDVI--ANLVNLNALGVESNQLAGTIP----LAIGE 375 (566)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 375 (566)
..++.+.+.++.+.......+.. ..+.|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45777777777665322111111 12568888888888877777766 778888888888888875433 23446
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCeEeccCcccccc--C--CCCCcCCCCCcEEEccCCcceeccchhhhhhccc
Q 046712 376 LKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGK--I--PPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITL 451 (566)
Q Consensus 376 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 451 (566)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.+... +...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~------ 216 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVC------ 216 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHH------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHH------
Confidence 78888888888888766667788888888888888876532 1 23345677788887777776521 1100
Q ss_pred ceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCC---CCCcEEeCCCCcccccCCcCCcCCCCCCEEe
Q 046712 452 SVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGC---TSLEYLGMQDNSFTISIPSTLSSLKSITELD 528 (566)
Q Consensus 452 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~---~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 528 (566)
...+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|.++. ++|++|+
T Consensus 217 ---------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 217 ---------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp ---------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred ---------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 0013456778888888888876656666655 68888888888888 5676664 7888888
Q ss_pred CCCCccccccCccccccccCceeecccCcCccc
Q 046712 529 LSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK 561 (566)
Q Consensus 529 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 561 (566)
+++|++++. |. +..+++|+.|++++|++++.
T Consensus 279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCSCCCCSC-CC-TTSCCCCSCEECSSTTTSCC
T ss_pred CCCCcCCCC-ch-hhhCCCccEEECcCCCCCCC
Confidence 888888843 33 57778888888888888753
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.4e-21 Score=178.21 Aligned_cols=189 Identities=20% Similarity=0.225 Sum_probs=153.7
Q ss_pred CCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCc
Q 046712 20 NLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKIL 99 (566)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 99 (566)
.|+.|.|..|. ...++++++++.++.. |..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 47799999995 4456899999988854 44444 689999999999997788889999999999999999998888
Q ss_pred cccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCc
Q 046712 100 TDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN 179 (566)
Q Consensus 100 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~ 179 (566)
..|..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999777777889999999999999998665666788999999999999988666667888888
Q ss_pred ccEeecccccceecCC-cccCcccCceEeccccccc
Q 046712 180 LISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 180 L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~ 214 (566)
|+.|++++|.+.+..+ .+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 8888888888776555 4455566666666665554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.1e-23 Score=206.31 Aligned_cols=194 Identities=18% Similarity=0.248 Sum_probs=111.4
Q ss_pred hhccCCCCeecccCCcccc----cccccccCCCCCCEEEccCCcccccCCcccc----CC---------CCCCeEeccCc
Q 046712 349 IANLVNLNALGVESNQLAG----TIPLAIGELKSIQILFLNENFLRGTIPSSLG----NL---------TLLTQLILEVN 411 (566)
Q Consensus 349 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~---------~~L~~L~l~~~ 411 (566)
+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3566777777777777665 2444566667777777777766533222222 22 55556665555
Q ss_pred cccc-cCC---CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc
Q 046712 412 NLQG-KIP---PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS 487 (566)
Q Consensus 412 ~l~~-~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~ 487 (566)
.+.. ..+ ..+..+++|++|++++|.+....... ..+..+..+++|+.|++++|.++
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~--------------------l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH--------------------LLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH--------------------HHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH--------------------HHHHHhhcCCCccEEECcCCCCC
Confidence 5541 111 12334444444444444443110000 12224566677777777777764
Q ss_pred ----ccCCccccCCCCCcEEeCCCCccccc----CCcCCc--CCCCCCEEeCCCCcccc----ccCccc-cccccCceee
Q 046712 488 ----GEIPTTLGGCTSLEYLGMQDNSFTIS----IPSTLS--SLKSITELDLSRNNLSG----HIPQYL-ENLSFLLFLN 552 (566)
Q Consensus 488 ----~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~--~l~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~ 552 (566)
..++..+..+++|++|+|++|.+++. +++++. .+++|++|+|++|.+.. .+|..+ .++++|+.|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 34555666777777777777776654 344553 26777777777777775 366655 5567777777
Q ss_pred cccCcCcccC
Q 046712 553 MSYNHFEGKV 562 (566)
Q Consensus 553 l~~n~~~~~~ 562 (566)
+++|++++..
T Consensus 310 l~~N~l~~~~ 319 (386)
T 2ca6_A 310 LNGNRFSEED 319 (386)
T ss_dssp CTTSBSCTTS
T ss_pred ccCCcCCcch
Confidence 7777777654
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.3e-20 Score=177.62 Aligned_cols=204 Identities=21% Similarity=0.205 Sum_probs=176.1
Q ss_pred ccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCC
Q 046712 300 LTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSI 379 (566)
Q Consensus 300 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 379 (566)
+..+++++.++++++.++. +|..+ ++.++.|++++|.+++..+..+..+++|++|++++|.+++..+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCCc-CCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 5678899999999999884 34332 4789999999999998778889999999999999999986544 3788999
Q ss_pred CEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccC
Q 046712 380 QILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSD 459 (566)
Q Consensus 380 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 459 (566)
++|++++|.+. .++..+..+++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..+..+..+ +.|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-EKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC-CEEECCC
Confidence 99999999998 678888899999999999999997777889999999999999999986655555555555 9999999
Q ss_pred CcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712 460 NLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512 (566)
Q Consensus 460 ~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~ 512 (566)
|++.+..+..|..+++|+.|++++|.+. .+|..+...++|+.|+|++|++..
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999777778889999999999999998 778888888999999999998764
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.7e-23 Score=200.82 Aligned_cols=266 Identities=17% Similarity=0.244 Sum_probs=179.3
Q ss_pred CCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCC--CCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCC
Q 046712 19 INLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNL--NFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLG 96 (566)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l--~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 96 (566)
..|..|.++.+.. ..+++++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+..
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 4556899887652 46789999998876 3456666 8999999999999865554 6678999999999998765
Q ss_pred c-CccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccc-cCCC-CCCccccCCCCCCEEEccCC-cCccc-CC
Q 046712 97 K-ILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN-HLKG-QLPASIGNLSALQEIDVRGN-RLGGR-IP 171 (566)
Q Consensus 97 ~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-~~~~~~~~l~~L~~L~l~~~-~i~~~-~~ 171 (566)
. .+..+..+++|++|++++|.+++..+..+.++++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 5 6667888999999999999988777888888999999999998 5654 25666788899999999998 77643 45
Q ss_pred cccccCC-cccEeeccccc--ce--ecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccc-ccccCccc
Q 046712 172 STISHVR-NLISFNVAYNQ--FS--GMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNN-LTGSLQDS 245 (566)
Q Consensus 172 ~~l~~l~-~L~~L~l~~~~--~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~ 245 (566)
..+..++ +|++|++++|. +. .....+.. +++|++|++++|. +++.....
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-------------------------~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-------------------------CPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-------------------------CTTCSEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-------------------------CCCCCEEeCCCCCcCCHHHHHH
Confidence 6677788 88888888874 22 11112223 4455555555554 44344445
Q ss_pred ccccCCCCeeeccccc-ccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhH
Q 046712 246 LSNATNLQGLEINRNL-FSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSL 324 (566)
Q Consensus 246 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 324 (566)
+..+++|+.|++++|. +.......+..+++|+.|++++| +. ...+. .+. ..++.|++++|.+++..|..+
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~---~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQ---LLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHH---HHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHH---HHH--hhCcceEEecccCccccCCcc
Confidence 5566666666666663 22222223556666777777666 22 11111 111 124444466777766655443
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.7e-21 Score=176.62 Aligned_cols=196 Identities=15% Similarity=0.201 Sum_probs=133.6
Q ss_pred CCCEEecCCCcccccCCcccCCCCCCCEEeCCCCc-CCCcCccccccCCCCcEEEcCC-CcCCCCcchhccCCCCCCEEe
Q 046712 59 FLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNY-FLGKILTDLSHCSNLMKFEASN-NKLEGEIPVKISNLLMLQILN 136 (566)
Q Consensus 59 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 136 (566)
+|++|++++|.+++..+.+|.++++|++|++++|. ++...+..|.++++|++|++++ |.++...+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777775555567777777777777775 6655566677777777777776 777655555667777777777
Q ss_pred cccccCCCCCCccccCCCCCC---EEEccCC-cCcccCCcccccCCccc-EeecccccceecCCcccCcccCceEecccc
Q 046712 137 IAENHLKGQLPASIGNLSALQ---EIDVRGN-RLGGRIPSTISHVRNLI-SFNVAYNQFSGMIPPIYNISSLQYIFIHTN 211 (566)
Q Consensus 137 l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~i~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 211 (566)
+++|.+.+ +|. +..+++|+ +|++++| .++...+..|..+++|+ .|++++|.+.......+..++|++|++++|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 77777763 555 66777777 7777777 77655555677777777 777777777765554444467777777777
Q ss_pred c-ccccCCCCCCCCC-CCCcEEEcccccccccCcccccccCCCCeeecccc
Q 046712 212 R-FHGSVPLDNGVNL-PNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRN 260 (566)
Q Consensus 212 ~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 260 (566)
. +. .++...+..+ ++|+.|++++|.++..... .+++|+.|++.++
T Consensus 190 ~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 4 65 4444444466 7788888888777643332 4567777777654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.5e-20 Score=173.74 Aligned_cols=181 Identities=19% Similarity=0.179 Sum_probs=131.1
Q ss_pred CCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEc
Q 046712 353 VNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTT 432 (566)
Q Consensus 353 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 432 (566)
+..++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45778888888887 4454444 58899999999988777778888899999999999988777777888888888888
Q ss_pred cCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712 433 RKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512 (566)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~ 512 (566)
++|.+.+..+..+..+..+ +.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQL-DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCC-CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 8888875544444444433 777777777765555556667777777777777764444456667777777777777765
Q ss_pred cCCcCCcCCCCCCEEeCCCCccccc
Q 046712 513 SIPSTLSSLKSITELDLSRNNLSGH 537 (566)
Q Consensus 513 ~~~~~l~~l~~L~~L~l~~n~~~~~ 537 (566)
..++.+..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555666677777777777776643
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.3e-21 Score=177.00 Aligned_cols=200 Identities=17% Similarity=0.190 Sum_probs=129.9
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCc-ccccccccccCCCCCCEEEccC-CcccccCCccccCCCCCCeE
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQ-LAGTIPLAIGELKSIQILFLNE-NFLRGTIPSSLGNLTLLTQL 406 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L 406 (566)
+.+++|++++|.+++..+..+..+++|++|++++|. +++..+..|.++++|++|++++ |.++...+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 466666666666665444456666666666666664 5544444566666666666665 66654444555666666666
Q ss_pred eccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCC-cccccCCcCccCCCCCC-EEeCccc
Q 046712 407 ILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN-LLSGHFPTKVGNLKNLV-SLDISSN 484 (566)
Q Consensus 407 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~~L~-~L~ls~~ 484 (566)
++++|++.+ +|. +..+++|+. ++.|++++| .+.+..+..|..+++|+ +|++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~----------------------L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDI----------------------FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCS----------------------EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred eCCCCCCcc-ccc-ccccccccc----------------------ccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 666666553 333 444444440 025556665 55555556677888888 8888888
Q ss_pred cccccCCccccCCCCCcEEeCCCCc-ccccCCcCCcCC-CCCCEEeCCCCccccccCccccccccCceeecccC
Q 046712 485 MFSGEIPTTLGGCTSLEYLGMQDNS-FTISIPSTLSSL-KSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYN 556 (566)
Q Consensus 485 ~l~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 556 (566)
++....+..+.. ++|++|++++|+ ++...++.|..+ ++|+.|++++|+++...+. .+++|+.|+++++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 888433344554 788999999885 886667778888 8899999999888844333 5667888888876
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=5e-22 Score=194.38 Aligned_cols=260 Identities=18% Similarity=0.185 Sum_probs=135.6
Q ss_pred EEcccccccccCcccccccCCCCeeeccccccccccc----ccccCCC-CCcEEECCCCccCCcCCCChhhhhhccCC-C
Q 046712 231 FSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVS----INFSRLQ-NLSRLNLGENNLGTGTTNDLDFITLLTNC-T 304 (566)
Q Consensus 231 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~ 304 (566)
+.++.+.+++..+..+...++|++|++++|.+..... ..+..++ +|++|++++|.+.......+ ...+... +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL--VQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH--HHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH--HHHHhccCC
Confidence 3445555554444434444445666665555554433 3344444 55555555555443322111 1112222 4
Q ss_pred CCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhcc-CCCCeecccCCcccccccccc----cC-CCC
Q 046712 305 KLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANL-VNLNALGVESNQLAGTIPLAI----GE-LKS 378 (566)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~ 378 (566)
+|+.|++++|.+.+..+..+.. .+..+ ++|++|++++|.+++..+..+ .. .++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~---------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVK---------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHH---------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred CccEEECcCCcCChHHHHHHHH---------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 5555555555544333332222 12222 556666666665554433222 22 245
Q ss_pred CCEEEccCCcccccCC----ccccCCC-CCCeEeccCccccccCCCC----CcCC-CCCcEEEccCCcceec----cchh
Q 046712 379 IQILFLNENFLRGTIP----SSLGNLT-LLTQLILEVNNLQGKIPPS----NGNC-QNLILLTTRKNKLSGI----VPRQ 444 (566)
Q Consensus 379 L~~L~l~~n~~~~~~~----~~~~~~~-~L~~L~l~~~~l~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~ 444 (566)
|++|++++|.+++... ..+..++ +|++|++++|++.+..+.. +..+ ++|++|++++|.+.+. ++..
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 6666666666553222 2223333 6666666666655433322 2233 3666666666666542 3334
Q ss_pred hhhhcccceEEEccCCcccccCC----cCccCCCCCCEEeCcccccccc-------CCccccCCCCCcEEeCCCCccccc
Q 046712 445 LLRIITLSVLLDLSDNLLSGHFP----TKVGNLKNLVSLDISSNMFSGE-------IPTTLGGCTSLEYLGMQDNSFTIS 513 (566)
Q Consensus 445 ~~~~~~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~l~~~-------~~~~~~~~~~L~~L~L~~n~~~~~ 513 (566)
+....+.++.|++++|.+.+..+ ..+..+++|+.|++++|.+... ++..+..+++|++|++++|.+...
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 44444455777777777765433 3456778899999999984422 334577788899999999988755
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9.5e-21 Score=180.54 Aligned_cols=191 Identities=22% Similarity=0.311 Sum_probs=148.2
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
+.|++|++.+|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 789999999998875 34 57888999999999998886544 88889999999999998743 36888899999999
Q ss_pred cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~ 488 (566)
++|.+.+. + .+..+++|++|++++|.+.+..+ +..+..+ +.|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 99988753 3 37888999999999998875433 4444444 888888888875433 7788888888888888874
Q ss_pred cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712 489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|+++.
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 332 777888888888888887543 37778888888888888874
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=180.44 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=165.5
Q ss_pred CCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHh-hhccCCcEEEccCCCCCCCcc----hh
Q 046712 274 QNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLA-NLSTTMTEIAIGSNQISDTIP----DV 348 (566)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~ 348 (566)
..++.+.+..+.+..... ........+++|++|++++|.+.+..+..+. ...+.|++|++++|.+.+..+ ..
T Consensus 64 ~~l~~l~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLL---VGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHH---HHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHHH---HHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 345666666655432111 1111223446799999999999988877663 345899999999999987544 33
Q ss_pred hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCccccc--C--CccccCCCCCCeEeccCccccccCCC----C
Q 046712 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGT--I--PSSLGNLTLLTQLILEVNNLQGKIPP----S 420 (566)
Q Consensus 349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~~l~~~~~~----~ 420 (566)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|++.. ++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 45789999999999999988888999999999999999997532 1 2334678999999999999862 121 1
Q ss_pred CcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCC---CCCCEEeCccccccccCCccccCC
Q 046712 421 NGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNL---KNLVSLDISSNMFSGEIPTTLGGC 497 (566)
Q Consensus 421 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~---~~L~~L~ls~~~l~~~~~~~~~~~ 497 (566)
+..+++|++|++++|.+.+. .|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~-------------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-- 271 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRAT-------------------------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-- 271 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCC-------------------------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred HhcCCCCCEEECCCCCCCcc-------------------------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--
Confidence 34556666666666665543 33333333 68899999999888 6676664
Q ss_pred CCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712 498 TSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 498 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
++|++|++++|.+++ +|. +..+++|+.|++++|++++
T Consensus 272 ~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 789999999998884 333 6778899999999998863
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=9.4e-20 Score=173.66 Aligned_cols=194 Identities=23% Similarity=0.355 Sum_probs=154.5
Q ss_pred cCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCC
Q 046712 301 TNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ 380 (566)
Q Consensus 301 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 380 (566)
..+++|+.|+++++.+... + .+.. .+.|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~-l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhc-cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3567899999999988753 3 3333 4899999999999886544 88899999999999998854 3588899999
Q ss_pred EEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCC
Q 046712 381 ILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDN 460 (566)
Q Consensus 381 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 460 (566)
+|++++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+..+ +.|++++|
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKL-TTLKADDN 183 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-CEEECCSS
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCC-CEEECCCC
Confidence 999999998743 3 48889999999999999875433 7888999999999998875433 4555444 89999999
Q ss_pred cccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccc
Q 046712 461 LLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTI 512 (566)
Q Consensus 461 ~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~ 512 (566)
.+.+..+ +..+++|++|++++|.+.+.. .+..+++|++|++++|.++.
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 9875543 788899999999999998544 37889999999999998874
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.2e-21 Score=193.65 Aligned_cols=251 Identities=21% Similarity=0.217 Sum_probs=148.9
Q ss_pred cCccCcCCCCCCEEecCCCcccccC----CcccCCCCCCCEEeCCCCcCC---CcCcccc-------ccCCCCcEEEcCC
Q 046712 50 LSPFVGNLNFLRSINLPNNSFRGKI----PHEVGNLFRLQNLTLTNNYFL---GKILTDL-------SHCSNLMKFEASN 115 (566)
Q Consensus 50 ~~~~~~~l~~L~~L~ls~~~l~~~~----~~~~~~l~~L~~L~l~~~~l~---~~~~~~~-------~~l~~L~~L~l~~ 115 (566)
++..+..+++|++|++++|.+++.. +.++..+++|++|++++|.+. +..|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4455677788888888888777543 334667788888888776432 2233333 5677777777777
Q ss_pred CcCCC----CcchhccCCCCCCEEecccccCCCCCCcc----ccCC---------CCCCEEEccCCcCcc-cCC---ccc
Q 046712 116 NKLEG----EIPVKISNLLMLQILNIAENHLKGQLPAS----IGNL---------SALQEIDVRGNRLGG-RIP---STI 174 (566)
Q Consensus 116 ~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~i~~-~~~---~~l 174 (566)
|.+.. .++..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.++. .++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 77765 25556667777777777777765322222 2223 677777777776652 222 244
Q ss_pred ccCCcccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEccccccc----ccCcccccccC
Q 046712 175 SHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLT----GSLQDSLSNAT 250 (566)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~ 250 (566)
..+++|+.|++++|.+..... ....+... ..+++|++|++++|.++ ...+..+..++
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~------------------~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGI------------------EHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHH------------------HHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred HhCCCcCEEECcCCCCCHhHH------------------HHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 456666666666665541100 00001011 14566777777777664 33455666777
Q ss_pred CCCeeeccccccccc----cccccc--CCCCCcEEECCCCccCCcCCCChhhhhhc-cCCCCCCEEEccCCeeeeecc
Q 046712 251 NLQGLEINRNLFSGK----VSINFS--RLQNLSRLNLGENNLGTGTTNDLDFITLL-TNCTKLEVLDLHSNRFGGVLP 321 (566)
Q Consensus 251 ~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~ 321 (566)
+|+.|++++|.++.. .+..+. .+++|++|++++|.+...... .+...+ .++++|+.|++++|.+.+..+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~--~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--TLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH--HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH--HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 788888877777654 223342 377888888888877652110 111233 457888888888888876553
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.6e-19 Score=160.48 Aligned_cols=180 Identities=18% Similarity=0.195 Sum_probs=139.7
Q ss_pred CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccc
Q 046712 22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD 101 (566)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 101 (566)
|.|.++.|... .++.. |.. ..++|++|++++|.+++..+..|.++++|++|++++|.++...+..
T Consensus 7 C~~~~v~c~~~------------~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (208)
T 2o6s_A 7 CSGTTVECYSQ------------GRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71 (208)
T ss_dssp EETTEEECCSS------------CCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred ECCCEEEecCC------------CccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh
Confidence 78988888643 33322 222 2468899999999888666667888999999999999888777777
Q ss_pred cccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCccc
Q 046712 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLI 181 (566)
Q Consensus 102 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 181 (566)
|..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 88889999999999988866666678889999999999988866666678889999999999988866566678888899
Q ss_pred EeecccccceecCCcccCcccCceEecccccccccCCCCCC
Q 046712 182 SFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNG 222 (566)
Q Consensus 182 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 222 (566)
.|++++|.+. ..++.++.|.++.+.+++.+|....
T Consensus 152 ~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 152 YIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp EEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred EEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 9988888654 3456777777777877777775544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.3e-19 Score=171.94 Aligned_cols=220 Identities=16% Similarity=0.185 Sum_probs=92.7
Q ss_pred CCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccc-cccccCCCCCCE-EEccCCcccccCCccccCCCCCCeEe
Q 046712 330 TMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTI-PLAIGELKSIQI-LFLNENFLRGTIPSSLGNLTLLTQLI 407 (566)
Q Consensus 330 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~-L~l~~n~~~~~~~~~~~~~~~L~~L~ 407 (566)
++++|++++|.++...+..|.++++|++|++++|++.+.. +.+|.+++++++ +.+.+|.++...+..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 4444444444444322334444555555555555443222 223444444443 23333444433344445555555555
Q ss_pred ccCccccccCCCCCcCCCCCcEEEccC-CcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcc-cc
Q 046712 408 LEVNNLQGKIPPSNGNCQNLILLTTRK-NKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS-NM 485 (566)
Q Consensus 408 l~~~~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~-~~ 485 (566)
+++|++....+..+.....+..+++.+ +.+....+..+......++.|++++|.+.+..+..| ...+|++|++++ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCc
Confidence 555554433333333444444444433 233322223333333333455555555543333332 233455555543 33
Q ss_pred ccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecc
Q 046712 486 FSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMS 554 (566)
Q Consensus 486 l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 554 (566)
+....+..|.++++|++|++++|.++. +|.. .+.+|+.|.+.++...+.+|. +.++++|+.+++.
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 332222334555555555555555542 2221 123334444433333333332 4445555555543
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=5.9e-19 Score=160.32 Aligned_cols=170 Identities=18% Similarity=0.180 Sum_probs=125.0
Q ss_pred CCCCCCCCCcCCCCCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCE
Q 046712 7 DPLGVTSSWNNSINLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQN 86 (566)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~ 86 (566)
..+.....|..+...|.|.+++|... .++ .+|..+. ++|++|++++|.+++..|.+|.++++|++
T Consensus 4 ~~~~~~~~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 68 (229)
T 3e6j_A 4 HHHHHHSAACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKE 68 (229)
T ss_dssp -------CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccchhhccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcE
Confidence 34455677888888999999999643 233 2232222 77888888888888666777888888888
Q ss_pred EeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcC
Q 046712 87 LTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRL 166 (566)
Q Consensus 87 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 166 (566)
|++++|.+....+..|..+++|++|++++|+++...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+
T Consensus 69 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence 888888887666666778888888888888887666666778888888888888887 6777788888888888888888
Q ss_pred cccCCcccccCCcccEeeccccccee
Q 046712 167 GGRIPSTISHVRNLISFNVAYNQFSG 192 (566)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (566)
....+..+..+++|+.|++++|.+..
T Consensus 148 ~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 148 KSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CccCHHHHhCCCCCCEEEeeCCCccC
Confidence 75555667788888888888887653
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.3e-18 Score=169.06 Aligned_cols=206 Identities=14% Similarity=0.065 Sum_probs=143.6
Q ss_pred CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCc-Ccc
Q 046712 22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGK-ILT 100 (566)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~ 100 (566)
|.|..|.|+ +++++. +|..+ .+++++|++++|.|+...+++|.++++|++|++++|.+.+. ...
T Consensus 9 C~~~~v~C~------------~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQ------------ESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEE------------STTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEec------------CCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 566666664 445553 34334 36889999999999865667889999999999999987554 445
Q ss_pred ccccCCCCcE-EEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccC-CcCcccCCcccccCC
Q 046712 101 DLSHCSNLMK-FEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRG-NRLGGRIPSTISHVR 178 (566)
Q Consensus 101 ~~~~l~~L~~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~ 178 (566)
.|.+++++++ +.+..|++....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+.+|..+.
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 6788888775 55566788866677888899999999999988855555566677788888865 455544445566554
Q ss_pred -cccEeecccccceecCCcccCcccCceEecccccccccCCCCCCCCCCCCcEEEcccccccccC
Q 046712 179 -NLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSL 242 (566)
Q Consensus 179 -~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 242 (566)
.++.|++++|.+..+.+..+...+++++.+.++.....++...+..+++|++|++++|+++...
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 5778888888887776666666677777776544434566555556666666666666665433
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1e-18 Score=156.54 Aligned_cols=173 Identities=21% Similarity=0.191 Sum_probs=99.9
Q ss_pred CeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712 356 NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN 435 (566)
Q Consensus 356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 435 (566)
+.++.+++.++. .|..+ .++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456666666653 33322 357888888888877555556777788888888888777555555667777777777777
Q ss_pred cceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCC
Q 046712 436 KLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP 515 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 515 (566)
.+.+..+ ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 87 ~l~~~~~-------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 87 QLQSLPN-------------------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCCCCCT-------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCH-------------------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 6653322 334445555555555555553333344555555555555555554333
Q ss_pred cCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCcccCC
Q 046712 516 STLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 516 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 563 (566)
..+..+++|++|++++|++.. .+++|+.|++++|+++|.+|
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence 344555555555555554432 23345555555555555555
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.7e-19 Score=184.21 Aligned_cols=212 Identities=19% Similarity=0.284 Sum_probs=156.6
Q ss_pred CCCCCCCCCcCCCCCC-----ccccc-ccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCC
Q 046712 7 DPLGVTSSWNNSINLC-----QWTGV-TCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGN 80 (566)
Q Consensus 7 ~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~ 80 (566)
++...+.+|......| .|.++ .|.. .++++|++++|++++ +|..+ +++|++|++++|.++ .+| ..
T Consensus 28 ~~~~~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~ 98 (571)
T 3cvr_A 28 DYFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---EL 98 (571)
T ss_dssp HHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CC
T ss_pred hHHHHHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cc
Confidence 3344567898877778 68888 5642 589999999999987 55544 389999999999998 677 55
Q ss_pred CCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEE
Q 046712 81 LFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEID 160 (566)
Q Consensus 81 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 160 (566)
+++|++|++++|.+++ .+. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 7899999999999987 444 555 99999999999985 554 68899999999999984 665 578999999
Q ss_pred ccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccC-------ceEecccccccccCCCCCCCCCCCCcEEEc
Q 046712 161 VRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSL-------QYIFIHTNRFHGSVPLDNGVNLPNLRYFSI 233 (566)
Q Consensus 161 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 233 (566)
+++|.+++ +|. +. ++|+.|++++|.+...+. +.. +| +.|++++|.++ .+|...+ .+++|+.|++
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~L 237 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL-SLDPTCTIIL 237 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGG-GSCTTEEEEC
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh-cCCCCCEEEe
Confidence 99999885 666 65 889999999988875544 332 45 66666666665 4555554 3666666666
Q ss_pred ccccccccCcccccc
Q 046712 234 SGNNLTGSLQDSLSN 248 (566)
Q Consensus 234 ~~~~~~~~~~~~l~~ 248 (566)
++|.+++..+..+..
T Consensus 238 ~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSSCCHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHH
Confidence 666665544444433
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.3e-18 Score=175.92 Aligned_cols=190 Identities=24% Similarity=0.370 Sum_probs=140.0
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
..++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 478888888888876 55444 378888888888888 444 456888888888888885 555 544 8888888
Q ss_pred cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~ 488 (566)
++|++.+ +|. .+++|+.|++++|.+.+ +|. ..+.++.|++++|.+.+ .+. |. ++|+.|++++|.++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 8888875 554 57888888888888875 343 33455888888888875 444 54 78888888888887
Q ss_pred cCCccccCCCCC-------cEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCcccccccc
Q 046712 489 EIPTTLGGCTSL-------EYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSF 547 (566)
Q Consensus 489 ~~~~~~~~~~~L-------~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 547 (566)
.+|. |.. +| ++|+|++|.++ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 5665 543 66 88888888888 57777777888888888888888777777766543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4.7e-18 Score=153.21 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=118.3
Q ss_pred EEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcC
Q 046712 39 LDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKL 118 (566)
Q Consensus 39 l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 118 (566)
++.++++++.. |..+. ++|++|++++|.++...+.+|.++++|++|++++|.++...+..|.++++|++|++++|.+
T Consensus 16 v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34445555533 33333 6788888888888866677888888888888888888877788888888888888888888
Q ss_pred CCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccccee
Q 046712 119 EGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG 192 (566)
Q Consensus 119 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (566)
+...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 86555567788888888888888887777888888888888888888886666678888888888888887753
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=151.03 Aligned_cols=152 Identities=20% Similarity=0.197 Sum_probs=89.6
Q ss_pred CEEEccCCcccccCCccccCCCCCCeEeccCccccccCC-CCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEcc
Q 046712 380 QILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIP-PSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLS 458 (566)
Q Consensus 380 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 458 (566)
+.+++++|.++ .+|..+. +.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+..+ +.|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-NEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-CEEECC
Confidence 47888888887 4555443 456788888888876543 346777778887777777765444444444333 555555
Q ss_pred CCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712 459 DNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 459 ~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
+|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.++...|..|..+++|+.|++++|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555444444555555555555555555444455555555555555555555444555555555555555555554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.4e-18 Score=161.34 Aligned_cols=189 Identities=25% Similarity=0.357 Sum_probs=144.7
Q ss_pred cEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCc
Q 046712 332 TEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVN 411 (566)
Q Consensus 332 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 411 (566)
..+.+....+.+.. .+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 33445555554322 246789999999999998854 3 47889999999999999985433 888999999999999
Q ss_pred cccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCC
Q 046712 412 NLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIP 491 (566)
Q Consensus 412 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~ 491 (566)
.+.+ ++ .+..+++|++|++++|.+.+. ..+..+..+ +.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred cCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 9875 33 478899999999999998753 345554444 8888888888754 567788888888888888875433
Q ss_pred ccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccc
Q 046712 492 TTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGH 537 (566)
Q Consensus 492 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 537 (566)
+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++...
T Consensus 174 --l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred --hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 7788888888888888874 33 477888888888888888753
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=150.99 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=131.0
Q ss_pred EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCC-cccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712 38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIP-HEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116 (566)
Q Consensus 38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 116 (566)
+++++++.++. +|..+. +.+++|++++|.+++..+ .+|.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 56777777775 344443 457899999999986644 45889999999999999998888888999999999999999
Q ss_pred cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceec
Q 046712 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGM 193 (566)
Q Consensus 117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 193 (566)
.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99977787899999999999999999977788899999999999999999977788999999999999999988743
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.8e-17 Score=148.17 Aligned_cols=146 Identities=20% Similarity=0.231 Sum_probs=127.1
Q ss_pred CcccccccCCCC---------CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCC
Q 046712 22 CQWTGVTCGHRR---------QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNN 92 (566)
Q Consensus 22 ~~~~~~~~~~~~---------~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~ 92 (566)
|.|..+.|.... +.+++|++++|.++...+..|..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 788888887533 47899999999999888888999999999999999998778888999999999999999
Q ss_pred cCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712 93 YFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 93 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 167 (566)
.++...+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 998777777888999999999999998877888889999999999999998766677888999999999999875
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=7.7e-18 Score=164.36 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=94.8
Q ss_pred EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccC-CCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712 38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVG-NLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116 (566)
Q Consensus 38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 116 (566)
++++++++++.. |..+. +.+++|++++|.+++..+..+. ++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 22 ~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 344455555432 22222 3456666666666554555554 6666666666666665555555666666666666666
Q ss_pred cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCccc---ccCCcccEeecccccceec
Q 046712 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI---SHVRNLISFNVAYNQFSGM 193 (566)
Q Consensus 117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l---~~l~~L~~L~l~~~~~~~~ 193 (566)
+++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+ ..+++|+.|++++|.+...
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 6654444455566666666666666654445556666666666666666653222223 3456666666666665544
Q ss_pred CC-cccCccc--CceEeccccccc
Q 046712 194 IP-PIYNISS--LQYIFIHTNRFH 214 (566)
Q Consensus 194 ~~-~l~~~~~--L~~L~l~~~~~~ 214 (566)
.. .+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 43 3333443 355666665543
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=8.3e-18 Score=158.65 Aligned_cols=170 Identities=29% Similarity=0.380 Sum_probs=142.7
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
+.++.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEEC
Confidence 7899999999998754 3 47889999999999999986554 8899999999999999974 3 35888999999999
Q ss_pred cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~ 488 (566)
++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+..+ +.|++++|.+.+..+ +..+++|+.|++++|.+.+
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-CEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 99998853 4678899999999999998865 455555555 999999999986554 8899999999999999984
Q ss_pred cCCccccCCCCCcEEeCCCCccccc
Q 046712 489 EIPTTLGGCTSLEYLGMQDNSFTIS 513 (566)
Q Consensus 489 ~~~~~~~~~~~L~~L~L~~n~~~~~ 513 (566)
++ .+..+++|+.|++++|+++..
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred -Ch-hhccCCCCCEEECcCCcccCC
Confidence 44 488899999999999998853
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.2e-17 Score=169.43 Aligned_cols=180 Identities=26% Similarity=0.337 Sum_probs=115.8
Q ss_pred hhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCc
Q 046712 349 IANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLI 428 (566)
Q Consensus 349 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 428 (566)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.+ + ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 34566666666666666532 2 35666666666666666653322 5566666666666666653 2 2466666677
Q ss_pred EEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCC
Q 046712 429 LLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDN 508 (566)
Q Consensus 429 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n 508 (566)
.|++++|.+.+. ..+..++.+ +.|++++|.+.+. ..+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCCC--ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 777766666542 234444333 6677777766644 456778888888888888875444 777888888888888
Q ss_pred cccccCCcCCcCCCCCCEEeCCCCccccccCcccc
Q 046712 509 SFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLE 543 (566)
Q Consensus 509 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 543 (566)
.+.+ + ..+..+++|+.|+|++|++.......+.
T Consensus 186 ~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 186 HISD-L-RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp CCCB-C-GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred CCCC-C-hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 8774 3 4577788888888888887754333333
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.1e-17 Score=161.23 Aligned_cols=176 Identities=23% Similarity=0.153 Sum_probs=113.9
Q ss_pred CeecccCCcccccccccccCCCCCCEEEccCCcccccCCcccc-CCCCCCeEeccCccccccCCCCCcCCCCCcEEEccC
Q 046712 356 NALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLG-NLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRK 434 (566)
Q Consensus 356 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 434 (566)
+.++++++.++. +|..+. +.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 466666666663 343332 3466777777777655555555 667777777777776655555666666666666666
Q ss_pred CcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccC
Q 046712 435 NKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI 514 (566)
Q Consensus 435 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 514 (566)
|++. +..+..|..+++|+.|++++|.+....+..|..+++|++|+|++|.++...
T Consensus 98 N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLH-------------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCC-------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCC-------------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 6554 334445666777777777777777666667777777777777777777433
Q ss_pred CcCC---cCCCCCCEEeCCCCccccccCcccccccc--CceeecccCcCc
Q 046712 515 PSTL---SSLKSITELDLSRNNLSGHIPQYLENLSF--LLFLNMSYNHFE 559 (566)
Q Consensus 515 ~~~l---~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~ 559 (566)
+..| ..+++|+.|+|++|++....+..+..++. |+.|++++|+++
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3334 45777788888887777555566666665 377777777654
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.2e-16 Score=145.01 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=88.4
Q ss_pred CEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccc
Q 046712 61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN 140 (566)
Q Consensus 61 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 140 (566)
+.++.+++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|++....+..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44556555554 4444332 56666666666666555555666666666666666665444444556666666666666
Q ss_pred cCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEeccccccc
Q 046712 141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 141 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~ 214 (566)
.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+....+ .+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666444444556666666666666665 555566666666666666666655544 3455666666666666554
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.1e-17 Score=172.87 Aligned_cols=193 Identities=25% Similarity=0.311 Sum_probs=160.9
Q ss_pred cCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEE
Q 046712 352 LVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLT 431 (566)
Q Consensus 352 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 431 (566)
+..+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3445666777777764433 5678899999999999974 33 68889999999999999986544 88999999999
Q ss_pred ccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712 432 TRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 432 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~ 511 (566)
+++|.+.+. ..+..+..+ +.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.
T Consensus 94 Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 94 LDENKIKDL--SSLKDLKKL-KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCSSCCCCC--TTSTTCTTC-CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CcCCCCCCC--hhhccCCCC-CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 999999853 355555555 9999999999864 4688999999999999999854 67899999999999999999
Q ss_pred ccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCccc
Q 046712 512 ISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK 561 (566)
Q Consensus 512 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 561 (566)
+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 6554 89999999999999999854 4589999999999999999875
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=4.6e-17 Score=144.23 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=68.3
Q ss_pred CcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEc
Q 046712 34 QRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEA 113 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 113 (566)
+++++|+++++.++. ++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 344455555555442 22 3445555555555555332 2224444555555555555544434444445555555555
Q ss_pred CCCcCCCCcchhccCCCCCCEEeccccc-CCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccc
Q 046712 114 SNNKLEGEIPVKISNLLMLQILNIAENH-LKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQ 189 (566)
Q Consensus 114 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~ 189 (566)
++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 5555444344444455555555555554 32 222 34444555555555554442 22 34444444444444444
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=3.1e-17 Score=145.34 Aligned_cols=152 Identities=18% Similarity=0.284 Sum_probs=98.9
Q ss_pred cCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCE
Q 046712 55 GNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQI 134 (566)
Q Consensus 55 ~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 134 (566)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56677777777777776 445 5677777777777777553 2335667777777777777776555666777777777
Q ss_pred EecccccCCCCCCccccCCCCCCEEEccCCc-CcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccc
Q 046712 135 LNIAENHLKGQLPASIGNLSALQEIDVRGNR-LGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF 213 (566)
Q Consensus 135 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (566)
|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 7777777765566667777777777777776 44 333 5666677777777776665432 444455555555555443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.5e-17 Score=152.79 Aligned_cols=168 Identities=22% Similarity=0.293 Sum_probs=102.1
Q ss_pred cCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 046712 329 TTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLIL 408 (566)
Q Consensus 329 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 408 (566)
..+..+++.++.+.+. + .+..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3556666777776643 2 466777888888888877743 3 56777788888888887774333 777778888888
Q ss_pred cCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccc
Q 046712 409 EVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSG 488 (566)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~ 488 (566)
++|++.+ ++.. .. ++|+.|++++|.+.+. ..+..+++|+.|++++|++.+
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~---------------------------~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT---------------------------DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS---------------------------GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCCC---------------------------hhhcCcccccEEECCCCcCCC
Confidence 8777764 2222 22 6666666666665532 124455556666666665553
Q ss_pred cCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712 489 EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 489 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|++..
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 2 2 355555666666666655533 445555566666666665553
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.8e-16 Score=151.32 Aligned_cols=264 Identities=12% Similarity=0.062 Sum_probs=187.3
Q ss_pred CCCCcEEECCCCccCCcCCCChhhhhhccC-CCCCCEEEccCCeee--eecchhHhhhccCCcEEEccCCCCCCCcchhh
Q 046712 273 LQNLSRLNLGENNLGTGTTNDLDFITLLTN-CTKLEVLDLHSNRFG--GVLPFSLANLSTTMTEIAIGSNQISDTIPDVI 349 (566)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 349 (566)
++++++|.++++- . ..++ ..+.. +++|+.|++++|++. ......+ +.+..+.+..+.+ ....|
T Consensus 24 ~~~l~~L~l~g~i-~---~~~~---~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~----~~~~~~~~~~~~I---~~~aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGKL-N---AEDF---RHLRDEFPSLKVLDISNAEIKMYSGKAGTY----PNGKFYIYMANFV---PAYAF 89 (329)
T ss_dssp HHHCSEEEEEEEE-C---HHHH---HHHHHSCTTCCEEEEEEEEECCEEESSSSS----GGGCCEEECTTEE---CTTTT
T ss_pred hCceeEEEEeccc-c---HHHH---HHHHHhhccCeEEecCcceeEEecCccccc----ccccccccccccc---CHHHh
Confidence 4678888887641 1 1111 22333 789999999999987 2222111 2234445555533 33467
Q ss_pred hc--------cCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccc----cccC
Q 046712 350 AN--------LVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNL----QGKI 417 (566)
Q Consensus 350 ~~--------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l----~~~~ 417 (566)
.. +++|+++++.+ .++.+...+|.+|++|+++++++|.+....+..|..+.++..+....... ....
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence 77 99999999999 88878888999999999999999998877778898888888777766322 2222
Q ss_pred CCCCcCCCCCc-EEEccCCc------------------------ceeccchhhhhhcccceEEEccCCcccccCCcCccC
Q 046712 418 PPSNGNCQNLI-LLTTRKNK------------------------LSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGN 472 (566)
Q Consensus 418 ~~~~~~~~~L~-~L~l~~~~------------------------~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 472 (566)
...|..|..|+ .+.+.... +.......+....+.++.+++++|.+......+|.+
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~ 248 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ 248 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhC
Confidence 34455666666 33332211 000111112222455689999999898888888999
Q ss_pred CCCCCEEeCccccccccCCccccCCCCCc-EEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCcee
Q 046712 473 LKNLVSLDISSNMFSGEIPTTLGGCTSLE-YLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFL 551 (566)
Q Consensus 473 ~~~L~~L~ls~~~l~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 551 (566)
+++|++|++.+| +....+.+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.+....+..|..+++|+.+
T Consensus 249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 999999999987 7766777899999999 999988 7776777899999999999999999987777899999999988
Q ss_pred ec
Q 046712 552 NM 553 (566)
Q Consensus 552 ~l 553 (566)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=4.3e-15 Score=146.84 Aligned_cols=335 Identities=10% Similarity=0.034 Sum_probs=203.8
Q ss_pred ccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcch
Q 046712 45 SVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPV 124 (566)
Q Consensus 45 ~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 124 (566)
.|+.+-..+|.++++|+.+.+..+ ++.....+|.++.+|+.+++.++ ++.....+|.++++|+.+.+..+ +......
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 456666778889999999998754 66556778889999999999765 55566677888888888777654 3334455
Q ss_pred hccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccC
Q 046712 125 KISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSL 203 (566)
Q Consensus 125 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L 203 (566)
+|..+..++......... ....+|.++.+|+.+.+.++.. .....+|..+.+|+.+.+..+ +..... .+..+..|
T Consensus 135 aF~~~~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTV--IGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCccccc--cchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 666665444333322221 3356688888888888876543 255567778888888877655 333333 55566677
Q ss_pred ceEecccccccccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCC
Q 046712 204 QYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGE 283 (566)
Q Consensus 204 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 283 (566)
+.+.+..+... +....+ ....|+.+.+... ++.....++..+..++.+.+..+.. ......|..+..++.+....
T Consensus 211 ~~i~~~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CBCCCCTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECS
T ss_pred ceeecCCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCc
Confidence 76666544322 111112 3456666666443 2223444556666666666654432 23344455555555555544
Q ss_pred CccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCC
Q 046712 284 NNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESN 363 (566)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 363 (566)
..+.. ..+..+.+|+.+.+..+ +......+|.++.+|+.+++.++
T Consensus 286 ~~i~~---------~~F~~~~~L~~i~l~~~--------------------------i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 286 VIVPE---------KTFYGCSSLTEVKLLDS--------------------------VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp SEECT---------TTTTTCTTCCEEEECTT--------------------------CCEECTTTTTTCTTCCEECCCTT
T ss_pred eeecc---------ccccccccccccccccc--------------------------cceechhhhcCCCCCCEEEeCCc
Confidence 32211 23445555555554332 22223446777788888888644
Q ss_pred cccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEE
Q 046712 364 QLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILL 430 (566)
Q Consensus 364 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 430 (566)
++.+...+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++..+- . .+..+|.+|++|+.+
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 55456677888888888888766 544556678888888888876542 2 223457777777664
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.4e-16 Score=144.39 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=102.0
Q ss_pred EEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCC
Q 046712 36 VTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASN 115 (566)
Q Consensus 36 ~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 115 (566)
+..++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344556666666443 4667777777777777776 344 56677777777777777765443 66777777777777
Q ss_pred CcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC
Q 046712 116 NKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP 195 (566)
Q Consensus 116 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (566)
|++++ ++. +.. ++|++|++++|.+.+ + ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. .
T Consensus 95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 95 NRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp SCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-T
T ss_pred CccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-H
Confidence 77763 332 223 677777777777663 2 3466777777777777776632 2566666677776666666544 3
Q ss_pred cccCcccCceEeccccccc
Q 046712 196 PIYNISSLQYIFIHTNRFH 214 (566)
Q Consensus 196 ~l~~~~~L~~L~l~~~~~~ 214 (566)
.+..+++|+.|++++|.+.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCccc
Confidence 4444445555555544443
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.7e-16 Score=152.82 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=97.9
Q ss_pred CCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCC
Q 046712 225 LPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCT 304 (566)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 304 (566)
+++|+++++.. .++.....+|.+|++|+.+++.++.+......+|.++.++..+............ .+ ....+..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~-~i-~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN-RW-EHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST-TT-TTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc-cc-ccccccccc
Confidence 66666666666 5555556666666667777766666665566666666555555544321100000 00 002234445
Q ss_pred CCC-EEEccCCeeeeecchhHhh---hccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCC
Q 046712 305 KLE-VLDLHSNRFGGVLPFSLAN---LSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQ 380 (566)
Q Consensus 305 ~L~-~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 380 (566)
.|+ .+.+.... ..+..+.. ....+..+.+.+.-...........+++|+++++++|.++.+...+|.+|++|+
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 555 33333221 11111111 123444444433311100111112355666666666655555555566666666
Q ss_pred EEEccCCcccccCCccccCCCCCC-eEeccCccccccCCCCCcCCCCCcEEEccCCcc
Q 046712 381 ILFLNENFLRGTIPSSLGNLTLLT-QLILEVNNLQGKIPPSNGNCQNLILLTTRKNKL 437 (566)
Q Consensus 381 ~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 437 (566)
++++.+| +......+|.++++|+ .+++.+ .+....+.+|.+|++|+.+++..+.+
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 6666655 4434445566666666 666655 44444445555555555555444443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1.1e-18 Score=179.42 Aligned_cols=190 Identities=19% Similarity=0.166 Sum_probs=112.9
Q ss_pred hccCCCCeecccCCcccccccccccCCCCCCEEEccCCc-------------ccccCCccccCCCCCCeEe-ccCccccc
Q 046712 350 ANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF-------------LRGTIPSSLGNLTLLTQLI-LEVNNLQG 415 (566)
Q Consensus 350 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------------~~~~~~~~~~~~~~L~~L~-l~~~~l~~ 415 (566)
..++.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..+..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34667777777777776 556667777777777776554 2233444555555666665 3433221
Q ss_pred cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCcccc
Q 046712 416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLG 495 (566)
Q Consensus 416 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~ 495 (566)
.|+.+.+.+|.+....+ ..++.|++++|.+.+ .+. +..+++|+.|++++|.+. .+|..|.
T Consensus 424 ----------~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 22222233333221110 113566666666664 333 666667777777777666 5666666
Q ss_pred CCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccccc-CccccccccCceeecccCcCcccCC
Q 046712 496 GCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHI-PQYLENLSFLLFLNMSYNHFEGKVP 563 (566)
Q Consensus 496 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p 563 (566)
.+++|++|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|++++|++++..|
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 67777777777776663 44 6666777777777777776554 6666777777777777777766554
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.7e-14 Score=142.55 Aligned_cols=317 Identities=11% Similarity=0.045 Sum_probs=182.1
Q ss_pred ccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCcc
Q 046712 70 FRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPAS 149 (566)
Q Consensus 70 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 149 (566)
++.....||.++.+|+.+.+..+ ++.....+|.+|++|+.+++..+ ++.+...++..+..|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 44445667888888888888654 56566677888888888888754 44355566777777777766543 22233445
Q ss_pred ccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCC-cccCcccCceEecccccccccCCCCCCCCCCCC
Q 046712 150 IGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIP-PIYNISSLQYIFIHTNRFHGSVPLDNGVNLPNL 228 (566)
Q Consensus 150 ~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 228 (566)
|..+..++....... ......+|..+++|+.+.+..+. ..... .+..+.+|+.+.+..+
T Consensus 136 F~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~----------------- 195 (394)
T 4fs7_A 136 FKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN----------------- 195 (394)
T ss_dssp TTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-----------------
T ss_pred eecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-----------------
Confidence 555543332222221 11334456666666666664432 22222 3444455555544333
Q ss_pred cEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCE
Q 046712 229 RYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEV 308 (566)
Q Consensus 229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 308 (566)
++.....++..+..|+.+.+..+... . .........|+.+.+... +..... ..+..+..++.
T Consensus 196 ---------~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~------~~f~~~~~l~~ 257 (394)
T 4fs7_A 196 ---------LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGK------SVFYGCTDLES 257 (394)
T ss_dssp ---------CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECS------STTTTCSSCCE
T ss_pred ---------ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCC-ceeccc------cccccccccee
Confidence 22233334444444444444332211 1 111222234444444322 111111 23444555555
Q ss_pred EEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCc
Q 046712 309 LDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENF 388 (566)
Q Consensus 309 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 388 (566)
+.+..+... .....+. ....++.+......+ ....+..+.+|+.+.+.++ ++.+...+|.+|.+|+.+++.++
T Consensus 258 ~~~~~~~~~-i~~~~F~-~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 258 ISIQNNKLR-IGGSLFY-NCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp EEECCTTCE-ECSCTTT-TCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred EEcCCCcce-eeccccc-cccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence 555443221 2222221 124444444443322 2235778899999999765 55567788999999999999865
Q ss_pred ccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCC
Q 046712 389 LRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKN 435 (566)
Q Consensus 389 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 435 (566)
++.....+|.++.+|+.+++..+ +......+|.+|++|+.+++..+
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 55466789999999999999876 66566788999999999999754
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.7e-15 Score=133.32 Aligned_cols=129 Identities=23% Similarity=0.295 Sum_probs=74.1
Q ss_pred CeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchh-hhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCc
Q 046712 404 TQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQ-LLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDIS 482 (566)
Q Consensus 404 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 482 (566)
+.++++++.+. .+|..+. +++++|++++|.+.+..+.. +..+.. ++.|++++|.+.+..+..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCC-CCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67778777775 4554433 36777777777666444432 223322 3555666665555555555555566666666
Q ss_pred cccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCcccc
Q 046712 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSG 536 (566)
Q Consensus 483 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 536 (566)
+|++.+..+..|.++++|++|+|++|.+++..|+.+..+++|++|++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 665554444455555666666666665555555555555666666666665553
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=4.1e-14 Score=138.95 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=157.6
Q ss_pred ccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhh
Q 046712 248 NATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANL 327 (566)
Q Consensus 248 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 327 (566)
.+..++.+.+.+ .+..+...+|.++ +|+.+.+..+ +...+. .+|.++ +|+.+.+.. .+..+...++..
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~------~aF~~~-~L~~i~lp~-~l~~I~~~aF~~- 178 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGD------MAFFNS-TVQEIVFPS-TLEQLKEDIFYY- 178 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECT------TTTTTC-CCCEEECCT-TCCEECSSTTTT-
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECH------HhcCCC-CceEEEeCC-CccEehHHHhhC-
Confidence 345666666654 3444555556654 5777776554 444433 334443 466666654 333333333332
Q ss_pred ccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 046712 328 STTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLI 407 (566)
Q Consensus 328 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 407 (566)
.++|+.+++.++.+.......|. +.+|+.+.+..+ +..+...+|.+|++|+.+.+.++ ++.....+|.+ .+|+.+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 25566666655555543333343 455566655533 44344455555556666665543 23233344544 4555555
Q ss_pred ccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcccccc
Q 046712 408 LEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFS 487 (566)
Q Consensus 408 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~ 487 (566)
+. +.+......+|..|++|+.+.+.++.+. .+........+|.+|++|+.+++.+ ++.
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~--------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFN--------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCC--------------------CCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCcccc--------------------CCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 52 2333334455555555555555544332 0111135556788888888888884 466
Q ss_pred ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccc-cCceeecccCcC
Q 046712 488 GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-FLLFLNMSYNHF 558 (566)
Q Consensus 488 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~ 558 (566)
......|.+|++|+.+.|.++ ++.+...+|.++ +|+.+++.+|......+..|..++ .++.|++..+.+
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 566678888888998888665 555667788888 899999988888766667777774 677887766643
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.2e-15 Score=131.39 Aligned_cols=133 Identities=22% Similarity=0.246 Sum_probs=66.3
Q ss_pred CCCCEEecCCCccc-ccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEe
Q 046712 58 NFLRSINLPNNSFR-GKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILN 136 (566)
Q Consensus 58 ~~L~~L~ls~~~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 136 (566)
++|++|++++|.++ +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 33444445555555555555554433 4444555555555555555543444444455555555
Q ss_pred cccccCCCC-CCccccCCCCCCEEEccCCcCcccCC---cccccCCcccEeeccccccee
Q 046712 137 IAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIP---STISHVRNLISFNVAYNQFSG 192 (566)
Q Consensus 137 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~~~~~~~ 192 (566)
+++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|....
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 555555421 11445555555555555555553222 245555555555555555443
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=4.5e-14 Score=138.64 Aligned_cols=265 Identities=11% Similarity=0.079 Sum_probs=158.9
Q ss_pred CCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEE
Q 046712 56 NLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL 135 (566)
Q Consensus 56 ~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 135 (566)
-+..++.+.+.+. ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+..+...+|..|++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3466666666543 443445566664 5777777655 555555566664 577777765 4444555566777777777
Q ss_pred ecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccccc
Q 046712 136 NIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRFHG 215 (566)
Q Consensus 136 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 215 (566)
+++.+.+...-..+|. +.+|+.+.+..+ +......+|..+++|+.+.+..+ +..+....+....|+.+.+..+ +.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i~- 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-VT- 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-CC-
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-cc-
Confidence 7777666633333333 567777777644 44455566777777777777653 3334442222256777776432 32
Q ss_pred cCCCCCCCCCCCCcEEEccccccc-----ccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcC
Q 046712 216 SVPLDNGVNLPNLRYFSISGNNLT-----GSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGT 290 (566)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 290 (566)
.++...+..+++|+.+.+.++.+. .....+|.+|++|+.+.+.+ .+......+|.++.+|+.+.+..+ +....
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 445555556777777777665443 34556677777777777763 355566666777777777777543 44443
Q ss_pred CCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCC
Q 046712 291 TNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSN 339 (566)
Q Consensus 291 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 339 (566)
. .+|.++ +|+.+.+.++.........+...+..++.+.+-.+
T Consensus 339 ~------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 339 F------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp T------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred H------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 3 456677 77777777776655555555554456666666554
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.8e-15 Score=130.20 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=108.5
Q ss_pred CcEEEEEcCCCccc-cccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEE
Q 046712 34 QRVTGLDLRHQSVG-GVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFE 112 (566)
Q Consensus 34 ~~~~~l~l~~~~i~-~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 112 (566)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67888899988887 56677788888999999998888744 6788888899999998888776676677788899999
Q ss_pred cCCCcCCCCc-chhccCCCCCCEEecccccCCCCCC---ccccCCCCCCEEEccCCcCcccCCcc
Q 046712 113 ASNNKLEGEI-PVKISNLLMLQILNIAENHLKGQLP---ASIGNLSALQEIDVRGNRLGGRIPST 173 (566)
Q Consensus 113 l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~~~~~ 173 (566)
+++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. ..|++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9988887532 2678888889999999888874433 37788889999998888876 44443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.5e-15 Score=126.47 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=85.6
Q ss_pred CCCCCEEecCCCccc-ccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEE
Q 046712 57 LNFLRSINLPNNSFR-GKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQIL 135 (566)
Q Consensus 57 l~~L~~L~ls~~~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 135 (566)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777766 45666667777777777777766544 556667777777777777765566666667777777
Q ss_pred ecccccCCCC-CCccccCCCCCCEEEccCCcCcccCC---cccccCCcccEeecc
Q 046712 136 NIAENHLKGQ-LPASIGNLSALQEIDVRGNRLGGRIP---STISHVRNLISFNVA 186 (566)
Q Consensus 136 ~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~---~~l~~l~~L~~L~l~ 186 (566)
++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777632 23566777777777777777764433 356677777777664
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=1.3e-17 Score=171.35 Aligned_cols=121 Identities=20% Similarity=0.171 Sum_probs=80.0
Q ss_pred CCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCc
Q 046712 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDIS 482 (566)
Q Consensus 403 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 482 (566)
|+.|++++|.+++ +|. +..+++|+.|++++|.+ . ..|..+..+++|+.|+++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l-------------------------~-~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL-------------------------R-ALPPALAALRCLEVLQAS 494 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC-------------------------C-CCCGGGGGCTTCCEEECC
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCcccc-------------------------c-ccchhhhcCCCCCEEECC
Confidence 5555555555553 333 44555555555444444 3 344456677788888888
Q ss_pred cccccccCCccccCCCCCcEEeCCCCcccccC-CcCCcCCCCCCEEeCCCCccccccCc---cccccccCceeec
Q 046712 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISI-PSTLSSLKSITELDLSRNNLSGHIPQ---YLENLSFLLFLNM 553 (566)
Q Consensus 483 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l 553 (566)
+|.+++ +| .+..+++|++|+|++|.+++.. |..+..+++|+.|++++|++++.+|. .+..+++|+.|++
T Consensus 495 ~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 495 DNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888874 55 6777888888888888887654 77888888888888888888765442 2344677877764
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=8.1e-15 Score=128.93 Aligned_cols=127 Identities=18% Similarity=0.250 Sum_probs=82.6
Q ss_pred EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCc-ccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCC
Q 046712 38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPH-EVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNN 116 (566)
Q Consensus 38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 116 (566)
++++++++++. +|..+. ++|++|++++|.+++..+. .|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 12 ~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 45556666653 333332 2677777777777644443 3667777777777777777666666777777777777777
Q ss_pred cCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712 117 KLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 117 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 167 (566)
++++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 776555555666677777777777766656666666666777776666665
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=3.3e-16 Score=166.19 Aligned_cols=202 Identities=18% Similarity=0.190 Sum_probs=110.8
Q ss_pred CCCcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEe-----cCCCcccccCCcccCCCCCCCEEeCCCCcC
Q 046712 20 NLCQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSIN-----LPNNSFRGKIPHEVGNLFRLQNLTLTNNYF 94 (566)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~-----ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l 94 (566)
....|.+..++. +++..+++.++.+... +..+.....|+.+. ++.|.+. ..+..+..++.|+.|+|++|.+
T Consensus 161 ~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l 236 (727)
T 4b8c_D 161 PSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI 236 (727)
T ss_dssp -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred ccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC
Confidence 446787766653 7789999998888754 33333333333333 2333333 4577788999999999999988
Q ss_pred CCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCccc
Q 046712 95 LGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTI 174 (566)
Q Consensus 95 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l 174 (566)
. ..+..+..+++|++|++++|.++ .+|..+.++++|++|+|++|.+. .+|..++.+++|++|++++|.++ .+|..|
T Consensus 237 ~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 237 F-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp S-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred C-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence 7 45556668999999999999998 77888899999999999999998 78999999999999999999987 778889
Q ss_pred ccCCcccEeecccccceecCC-cccCc-ccCceEecccccccccCCCCCCCCCCCCcEEEcccc
Q 046712 175 SHVRNLISFNVAYNQFSGMIP-PIYNI-SSLQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN 236 (566)
Q Consensus 175 ~~l~~L~~L~l~~~~~~~~~~-~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 236 (566)
..+++|+.|++++|.+.+..+ .+... .....+++++|.+.+.+| ..|+.|+++.+
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n 369 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD 369 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence 999999999999998886665 22222 112235677787776554 34556666655
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.7e-15 Score=126.26 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=113.4
Q ss_pred CcEEEEEcCCCccc-cccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEE
Q 046712 34 QRVTGLDLRHQSVG-GVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFE 112 (566)
Q Consensus 34 ~~~~~l~l~~~~i~-~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 112 (566)
+++++|++++|.++ +.++..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 78999999999998 67888899999999999999999855 7799999999999999999877787788899999999
Q ss_pred cCCCcCCCC-cchhccCCCCCCEEecccccCCCCCC---ccccCCCCCCEEEccC
Q 046712 113 ASNNKLEGE-IPVKISNLLMLQILNIAENHLKGQLP---ASIGNLSALQEIDVRG 163 (566)
Q Consensus 113 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~ 163 (566)
+++|.+++. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999853 34788999999999999999985544 4789999999999864
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2.2e-14 Score=124.52 Aligned_cols=131 Identities=19% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCc
Q 046712 403 LTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDIS 482 (566)
Q Consensus 403 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 482 (566)
.+.++++++.+. .+|..+ .+++++|++++|.+.+ ..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~l~ 60 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQS-------------------------LPHGVFDKLTQLTKLSLS 60 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCC-------------------------CCTTTTTTCTTCSEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccE-------------------------eCHHHhcCcccccEEECC
Confidence 456666666655 233222 2455666665555543 333334445555555555
Q ss_pred cccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCccc
Q 046712 483 SNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFEGK 561 (566)
Q Consensus 483 ~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 561 (566)
+|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|++++.
T Consensus 61 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 5555533333445555555555555555543334445555555555555555543333444555555555555555443
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.3e-14 Score=123.62 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=91.0
Q ss_pred EEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCc
Q 046712 38 GLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNK 117 (566)
Q Consensus 38 ~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 117 (566)
+++++++.++.. |..+ .++|++|++++|.++ .+|.+|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 14 ~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456666666643 3333 257888888888887 667778888888888888888877777777788888888888888
Q ss_pred CCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCc
Q 046712 118 LEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 118 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 167 (566)
++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77666667777777777777777777444445667777777777777664
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=9e-14 Score=122.13 Aligned_cols=128 Identities=20% Similarity=0.293 Sum_probs=111.6
Q ss_pred CEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccc
Q 046712 61 RSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAEN 140 (566)
Q Consensus 61 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 140 (566)
++++++++.++ .+|..+. ++|++|++++|.++ ..+..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 68999999998 6776554 58999999999987 45578999999999999999999877788999999999999999
Q ss_pred cCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeeccccccee
Q 046712 141 HLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSG 192 (566)
Q Consensus 141 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 192 (566)
.+.+..+..+..+++|++|++++|.++...+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9997777889999999999999999986656678889999999999988763
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=3.3e-15 Score=158.47 Aligned_cols=169 Identities=21% Similarity=0.274 Sum_probs=120.9
Q ss_pred CcEEEEEcCCCcccc---------ccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCcccccc
Q 046712 34 QRVTGLDLRHQSVGG---------VLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSH 104 (566)
Q Consensus 34 ~~~~~l~l~~~~i~~---------~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 104 (566)
..++.++|+.+.+.. ..+..|..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ ..|..|.+
T Consensus 191 ~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 268 (727)
T 4b8c_D 191 ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN 268 (727)
T ss_dssp -------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence 445566666665543 44778999999999999999998 77877889999999999999998 67788999
Q ss_pred CCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCc-ccEe
Q 046712 105 CSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRN-LISF 183 (566)
Q Consensus 105 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~-L~~L 183 (566)
+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..++.+++|++|++++|.+++..|..+..+.. ...+
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 999999999999999 77999999999999999999998 78999999999999999999999888887765432 2346
Q ss_pred ecccccceecCCcccCcccCceEecccc
Q 046712 184 NVAYNQFSGMIPPIYNISSLQYIFIHTN 211 (566)
Q Consensus 184 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 211 (566)
++++|.+.+..+ ..++.|+++.+
T Consensus 347 ~l~~N~l~~~~p-----~~l~~l~l~~n 369 (727)
T 4b8c_D 347 YLRDNRPEIPLP-----HERRFIEINTD 369 (727)
T ss_dssp HHHHCCCCCCCC-----CC---------
T ss_pred hhccCcccCcCc-----cccceeEeecc
Confidence 788887765544 34555666554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.3e-13 Score=119.68 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=103.5
Q ss_pred CcccccccCCCCCcEEEEEcCCCccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccc
Q 046712 22 CQWTGVTCGHRRQRVTGLDLRHQSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTD 101 (566)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 101 (566)
|.|.++.|. +++++.. |.. ..++|++|++++|.+++..+..+.++++|++|++++|.++...+..
T Consensus 7 C~~~~l~~~------------~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 7 CSGTEIRCN------------SKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp EETTEEECC------------SSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred eCCCEEEec------------CCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence 666666554 4455533 222 2368999999999998666667889999999999999988777777
Q ss_pred cccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEccCCcCcc
Q 046712 102 LSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGG 168 (566)
Q Consensus 102 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 168 (566)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8889999999999999986666667888999999999998885555556788899999999888764
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.6e-14 Score=125.29 Aligned_cols=104 Identities=21% Similarity=0.202 Sum_probs=79.2
Q ss_pred eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCc--CCcCCCCCCEEeCC
Q 046712 453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPS--TLSSLKSITELDLS 530 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~ 530 (566)
+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|. .+..+++|+.|+++
T Consensus 45 ~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 45 DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECC
T ss_pred CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEec
Confidence 5555555555543 45678889999999999988544455588899999999999887 4554 78888999999999
Q ss_pred CCccccccCc----cccccccCceeecccCcCcc
Q 046712 531 RNNLSGHIPQ----YLENLSFLLFLNMSYNHFEG 560 (566)
Q Consensus 531 ~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~ 560 (566)
+|++. .+|. .+..+++|+.|++++|+.+.
T Consensus 122 ~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 122 RNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp SSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99987 4455 38888999999999887643
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.1e-14 Score=122.61 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=81.9
Q ss_pred CcCCCCCCEEecCCCcccccCCcccCCC-CCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCC
Q 046712 54 VGNLNFLRSINLPNNSFRGKIPHEVGNL-FRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLML 132 (566)
Q Consensus 54 ~~~l~~L~~L~ls~~~l~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 132 (566)
+.++++|++|++++|.++ .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455666777777777666 3343 3333 3677777777766543 456666777777777776664333334666677
Q ss_pred CEEecccccCCCCCCc--cccCCCCCCEEEccCCcCcccCCcc----cccCCcccEeecccccce
Q 046712 133 QILNIAENHLKGQLPA--SIGNLSALQEIDVRGNRLGGRIPST----ISHVRNLISFNVAYNQFS 191 (566)
Q Consensus 133 ~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~~~----l~~l~~L~~L~l~~~~~~ 191 (566)
++|++++|.+. .+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777665 4444 5666777777777777765 34443 666777777777666543
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=4.1e-12 Score=125.41 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=48.7
Q ss_pred chhhhccCCCCeecccCCcccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC
Q 046712 346 PDVIANLVNLNALGVESNQLAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ 425 (566)
Q Consensus 346 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 425 (566)
...|.+|.+|+++++.++ ++.+...+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++.++.... ..+..+.
T Consensus 304 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~ 378 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDS 378 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCC
T ss_pred ceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccC
Confidence 345666777777777653 44455667777777777777654 443445677777777777777665331 2455666
Q ss_pred CCcEEEccCCc
Q 046712 426 NLILLTTRKNK 436 (566)
Q Consensus 426 ~L~~L~l~~~~ 436 (566)
.|+.+.+..+.
T Consensus 379 ~L~~i~i~~~~ 389 (394)
T 4gt6_A 379 GLQNLPVAPGS 389 (394)
T ss_dssp CC---------
T ss_pred CCCEEEeCCCC
Confidence 67766665443
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=1.9e-11 Score=120.60 Aligned_cols=310 Identities=13% Similarity=0.158 Sum_probs=159.1
Q ss_pred CceEecccccccccCCCCCCCCCCCCcEEEcccc---cccccCcccccccCCCCeeecccccccccccccccCCCCCcEE
Q 046712 203 LQYIFIHTNRFHGSVPLDNGVNLPNLRYFSISGN---NLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRL 279 (566)
Q Consensus 203 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 279 (566)
|+.+.+... ++ .+....+..+.+|+.+.+..+ .++.....+|..+.+|+.+.+..+ +......+|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 555554432 21 334444445666666666544 244445556666667776666543 333445556667777777
Q ss_pred ECCCCccCCcCCCChhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeec
Q 046712 280 NLGENNLGTGTTNDLDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALG 359 (566)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 359 (566)
.+... +..... ..+..+..|+.+.+..+ +..+...++.. ..|+.+.+...... .....+..+.+++...
T Consensus 143 ~lp~~-~~~I~~------~~F~~c~~L~~i~~~~~-~~~I~~~aF~~--~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 143 TIPEG-VTSVAD------GMFSYCYSLHTVTLPDS-VTAIEERAFTG--TALTQIHIPAKVTR-IGTNAFSECFALSTIT 211 (394)
T ss_dssp ECCTT-CCEECT------TTTTTCTTCCEEECCTT-CCEECTTTTTT--CCCSEEEECTTCCE-ECTTTTTTCTTCCEEE
T ss_pred cccce-eeeecc------cceecccccccccccce-eeEeccccccc--cceeEEEECCcccc-cccchhhhccccceec
Confidence 76532 222222 34566667777766544 22233333322 45555555433211 2233455555665555
Q ss_pred ccCCcccccccc-------------cccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCC
Q 046712 360 VESNQLAGTIPL-------------AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQN 426 (566)
Q Consensus 360 l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 426 (566)
............ .+.....+..+.+.+. ++.....+|..+..|+.+.+.+.... ....+|.+|+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~ 289 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPA 289 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTT
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccccc
Confidence 443322211000 0111223333333322 11123344555555555555433221 23334444555
Q ss_pred CcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCC
Q 046712 427 LILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ 506 (566)
Q Consensus 427 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~ 506 (566)
|+.+.+ . ..+......+|.+|.+|++++|..+ ++.....+|.+|.+|+++.|.
T Consensus 290 L~~i~l-------------------------~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 290 LQDIEF-------------------------S-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp CCEEEC-------------------------C-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccC-------------------------C-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 554443 2 2233345567888889999998764 554566788889999999997
Q ss_pred CCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccCceeecccCcCc
Q 046712 507 DNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFLLFLNMSYNHFE 559 (566)
Q Consensus 507 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 559 (566)
++ ++.+...+|.+|++|+.+++.++.... ..+....+|+.+.+..+.+.
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 65 554566788899999999998876541 45667788888888776543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.2e-12 Score=112.39 Aligned_cols=105 Identities=24% Similarity=0.263 Sum_probs=53.8
Q ss_pred CcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCC
Q 046712 427 LILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQ 506 (566)
Q Consensus 427 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~ 506 (566)
.+.++++++.+.. +|..+ ...++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3455666555542 23222 2333555555555555545555555555555555555553333444555555555555
Q ss_pred CCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712 507 DNSFTISIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 507 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
+|.++...++.|..+++|++|+|++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55555433344555555555555555554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.9e-15 Score=133.93 Aligned_cols=156 Identities=24% Similarity=0.242 Sum_probs=93.5
Q ss_pred ccCCCCCCEEEccCCcccccCCc------cccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhh
Q 046712 373 IGELKSIQILFLNENFLRGTIPS------SLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLL 446 (566)
Q Consensus 373 ~~~~~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 446 (566)
+.....++.++++++.+.+..+. .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. .+|.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~--- 87 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN--- 87 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS---
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc---
Confidence 34445566666666666554444 67777778888887777764 44 6666777777777777665 2232
Q ss_pred hhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCC-cCCcCCCCCC
Q 046712 447 RIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIP-STLSSLKSIT 525 (566)
Q Consensus 447 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~ 525 (566)
.+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.++...+ +.+..+++|+
T Consensus 88 ----------------------~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 88 ----------------------LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp ----------------------HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred ----------------------hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 23334556666666666653 33 35556666666666666653211 3456666666
Q ss_pred EEeCCCCccccccCc----------cccccccCceeecccCcCcc
Q 046712 526 ELDLSRNNLSGHIPQ----------YLENLSFLLFLNMSYNHFEG 560 (566)
Q Consensus 526 ~L~l~~n~~~~~~~~----------~l~~l~~L~~L~l~~n~~~~ 560 (566)
+|++++|++.+..|. .+..+++|+.|+ +++++.
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777766666554443 266677777766 666554
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.6e-12 Score=110.58 Aligned_cols=104 Identities=25% Similarity=0.261 Sum_probs=60.8
Q ss_pred cEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCC
Q 046712 428 ILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQD 507 (566)
Q Consensus 428 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~ 507 (566)
+.++++++.+. .+|..+ +..++.|++++|.+.+..+..|..+++|+.|++++|++.+..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 55666666654 333322 23446666666666655556666666666666666666643334455666666666666
Q ss_pred CcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712 508 NSFTISIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 508 n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
|.++...+..|..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666433344666666666666666665
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=8.2e-12 Score=107.13 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEc
Q 046712 82 FRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161 (566)
Q Consensus 82 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 161 (566)
++|++|++++|.+++..+..|..+++|++|++++|+++...+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444444444444444444444444444333333444455555555555544333334555555555555
Q ss_pred cCCcCc
Q 046712 162 RGNRLG 167 (566)
Q Consensus 162 ~~~~i~ 167 (566)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=4.5e-14 Score=137.31 Aligned_cols=185 Identities=17% Similarity=0.062 Sum_probs=124.3
Q ss_pred CCCCCEEEccCCcccccCCccc----c-CCCCCCeEeccCccccccCCCCC-cCCCCCcEEEccCCcceeccchhhhhh-
Q 046712 376 LKSIQILFLNENFLRGTIPSSL----G-NLTLLTQLILEVNNLQGKIPPSN-GNCQNLILLTTRKNKLSGIVPRQLLRI- 448 (566)
Q Consensus 376 ~~~L~~L~l~~n~~~~~~~~~~----~-~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~- 448 (566)
.++|++|++++|.++......+ . ..++|++|++++|.+.......+ ..+++|+.|++++|.+.+.....+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999875333322 2 23689999999998864333222 346789999999999876555554432
Q ss_pred ---cccceEEEccCCcccccCC----cCccCCCCCCEEeCccccccccC----CccccCCCCCcEEeCCCCccccc----
Q 046712 449 ---ITLSVLLDLSDNLLSGHFP----TKVGNLKNLVSLDISSNMFSGEI----PTTLGGCTSLEYLGMQDNSFTIS---- 513 (566)
Q Consensus 449 ---~~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~~~l~~~~----~~~~~~~~~L~~L~L~~n~~~~~---- 513 (566)
.+.++.|++++|.+++... .++...++|++|++++|.+.+.. +..+...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2446889999998875332 33467788999999999887433 45566778899999999988753
Q ss_pred CCcCCcCCCCCCEEeCCCCccccccCccccccc-----cCceee--cccCcCcc
Q 046712 514 IPSTLSSLKSITELDLSRNNLSGHIPQYLENLS-----FLLFLN--MSYNHFEG 560 (566)
Q Consensus 514 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-----~L~~L~--l~~n~~~~ 560 (566)
+.+.+...++|++|+|++|.+.......+..+. .|+.+. +.++.++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 334455668899999999988765444444331 166666 66665543
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=3.1e-14 Score=126.04 Aligned_cols=133 Identities=24% Similarity=0.292 Sum_probs=79.4
Q ss_pred hhccCCCCeecccCCcccccccc------cccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCc
Q 046712 349 IANLVNLNALGVESNQLAGTIPL------AIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNG 422 (566)
Q Consensus 349 ~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 422 (566)
+...+.++.++++.+.+.+..+. .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34456666666666666655444 67777788888888887774 45 6777788888888888777 4555555
Q ss_pred CCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCC-cCccCCCCCCEEeCcccccc
Q 046712 423 NCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFP-TKVGNLKNLVSLDISSNMFS 487 (566)
Q Consensus 423 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~~~l~ 487 (566)
.+++|++|++++|.+.+. + .+..+..+ +.|++++|.+.+... ..+..+++|++|++++|++.
T Consensus 91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L-~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 91 VADTLEELWISYNQIASL-S-GIEKLVNL-RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHCSEEEEEEEECCCH-H-HHHHHHHS-SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCCEEECcCCcCCcC-C-ccccCCCC-CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 667777777777776642 2 23333222 444444444442211 23344455555555555444
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=1.2e-11 Score=106.45 Aligned_cols=86 Identities=27% Similarity=0.238 Sum_probs=39.9
Q ss_pred CCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCCEEecccccCCCCCCccccCCCCCCEEEc
Q 046712 82 FRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQILNIAENHLKGQLPASIGNLSALQEIDV 161 (566)
Q Consensus 82 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 161 (566)
++|++|++++|.+++..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444433444444444444444444444333333344455555555555554322333555555555555
Q ss_pred cCCcCc
Q 046712 162 RGNRLG 167 (566)
Q Consensus 162 ~~~~i~ 167 (566)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=5.1e-14 Score=136.89 Aligned_cols=184 Identities=15% Similarity=0.077 Sum_probs=126.0
Q ss_pred cCCCCeecccCCccccccccccc-----CCCCCCEEEccCCcccccCCccc-cCCCCCCeEeccCccccccCCCCC----
Q 046712 352 LVNLNALGVESNQLAGTIPLAIG-----ELKSIQILFLNENFLRGTIPSSL-GNLTLLTQLILEVNNLQGKIPPSN---- 421 (566)
Q Consensus 352 l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~---- 421 (566)
.+.|++|++++|.++......+. ..++|++|++++|.+++.....+ ..+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 47899999999998754433332 23799999999999865333222 335689999999999875433333
Q ss_pred -cCCCCCcEEEccCCcceeccchhh----hhhcccceEEEccCCcccccC----CcCccCCCCCCEEeCccccccccC--
Q 046712 422 -GNCQNLILLTTRKNKLSGIVPRQL----LRIITLSVLLDLSDNLLSGHF----PTKVGNLKNLVSLDISSNMFSGEI-- 490 (566)
Q Consensus 422 -~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~l~~L~l~~~~~~~~~----~~~~~~~~~L~~L~ls~~~l~~~~-- 490 (566)
...++|++|++++|.+.+.....+ ..... ++.|++++|.+.+.. ...+...++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 246889999999999875433333 33344 599999999987543 445667789999999999997533
Q ss_pred --CccccCCCCCcEEeCCCCcccccCCcCCcCC---C--CCCEEe--CCCCcccc
Q 046712 491 --PTTLGGCTSLEYLGMQDNSFTISIPSTLSSL---K--SITELD--LSRNNLSG 536 (566)
Q Consensus 491 --~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l---~--~L~~L~--l~~n~~~~ 536 (566)
+..+..+++|++|+|++|.+++.....+..+ . .|+.+. +.++.+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 3445567899999999999886544433322 2 277777 77776653
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.27 E-value=1.2e-09 Score=107.31 Aligned_cols=315 Identities=10% Similarity=0.065 Sum_probs=146.0
Q ss_pred CcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCCCCcchhccCCCCCC
Q 046712 54 VGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLEGEIPVKISNLLMLQ 133 (566)
Q Consensus 54 ~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 133 (566)
+....+|+.+.+... ++.....+|.++.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ +..+...+|..+ +|+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 445566777777543 44445567777777777777654 455555666666 4666666543 332333344443 567
Q ss_pred EEecccccCCCCCCccccCCCCCCEEEccCCcCcccCCcccccCCcccEeecccccceecCCcccCcccCceEecccccc
Q 046712 134 ILNIAENHLKGQLPASIGNLSALQEIDVRGNRLGGRIPSTISHVRNLISFNVAYNQFSGMIPPIYNISSLQYIFIHTNRF 213 (566)
Q Consensus 134 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 213 (566)
.+.+..+-.. ....++.++ +++.+.+..+ ++.....++..+.+++...+....................
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 185 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKT-------- 185 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSS--------
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccc--------
Confidence 7766554221 223333333 4555544433 2223344455555555554433221111000000000000
Q ss_pred cccCCCCCCCCCCCCcEEEcccccccccCcccccccCCCCeeecccccccccccccccCCCCCcEEECCCCccCCcCCCC
Q 046712 214 HGSVPLDNGVNLPNLRYFSISGNNLTGSLQDSLSNATNLQGLEINRNLFSGKVSINFSRLQNLSRLNLGENNLGTGTTND 293 (566)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 293 (566)
.. ........+..+.+.... .......+..+.+++.+.+..+ +......+|..+..|+.+.+..+ ++..+.
T Consensus 186 ---~~-~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~-- 256 (379)
T 4h09_A 186 ---IL-ESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS-- 256 (379)
T ss_dssp ---EE-EECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT--
T ss_pred ---ee-ccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc--
Confidence 00 000022333333333221 1122333444455555555332 22233334445555555554432 222222
Q ss_pred hhhhhhccCCCCCCEEEccCCeeeeecchhHhhhccCCcEEEccCCCCCCCcchhhhccCCCCeecccCCcccccccccc
Q 046712 294 LDFITLLTNCTKLEVLDLHSNRFGGVLPFSLANLSTTMTEIAIGSNQISDTIPDVIANLVNLNALGVESNQLAGTIPLAI 373 (566)
Q Consensus 294 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 373 (566)
.++..+.+|+.+.+... +.......|..+.+|+++.+.++.++.+...+|
T Consensus 257 ----~aF~~~~~l~~i~l~~~--------------------------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 257 ----FLLQNCTALKTLNFYAK--------------------------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp ----TTTTTCTTCCEEEECCC--------------------------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTT
T ss_pred ----cccceeehhcccccccc--------------------------ceeccccccccccccccccccccccceehhhhh
Confidence 23444445555444321 111222345666777777776666655556667
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCC
Q 046712 374 GELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQ 425 (566)
Q Consensus 374 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 425 (566)
.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|.+|.
T Consensus 307 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 307 MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77777777777644 33344556666777776666443 3333344454443
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.21 E-value=4.1e-09 Score=103.36 Aligned_cols=167 Identities=10% Similarity=0.040 Sum_probs=96.0
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccCccccccCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccc
Q 046712 373 IGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEVNNLQGKIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLS 452 (566)
Q Consensus 373 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 452 (566)
+..+..+..+.+...... .....+..+..|+.+.+..+ +......++..+..|+.+.+..+ +.......+..... +
T Consensus 190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~-l 265 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA-L 265 (379)
T ss_dssp CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT-C
T ss_pred ccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh-h
Confidence 344455555555443332 33445555566666666433 22233445566666666666543 22222222222222 2
Q ss_pred eEEEccCCcccccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCC
Q 046712 453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRN 532 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 532 (566)
+.+.+... +......+|.++++|+.+++.++.+......+|.+|.+|+.+.|.++ ++.+...+|.+|++|+.+.+..+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 55555433 33345567778888888888877776556677888888888888654 55455677888888888887654
Q ss_pred ccccccCccccccc
Q 046712 533 NLSGHIPQYLENLS 546 (566)
Q Consensus 533 ~~~~~~~~~l~~l~ 546 (566)
++......|..+.
T Consensus 344 -v~~I~~~aF~~c~ 356 (379)
T 4h09_A 344 -ITLIESGAFEGSS 356 (379)
T ss_dssp -CCEECTTTTTTSS
T ss_pred -cCEEchhHhhCCC
Confidence 4434445666554
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=2.6e-10 Score=110.53 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCC-ccccccCccCcCCCCCCEEecCC-CcccccCCcccCCCCCCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCcCC
Q 046712 42 RHQ-SVGGVLSPFVGNLNFLRSINLPN-NSFRGKIPHEVGNLFRLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNKLE 119 (566)
Q Consensus 42 ~~~-~i~~~~~~~~~~l~~L~~L~ls~-~~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 119 (566)
+++ +++. +|. |..+++|++|+|++ |.++...+.+|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++
T Consensus 16 ~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 16 TRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 344 5664 455 88888888888886 8888666677888888888888888888777777888888888888888887
Q ss_pred CCcchhccCCCCCCEEecccccCC
Q 046712 120 GEIPVKISNLLMLQILNIAENHLK 143 (566)
Q Consensus 120 ~~~~~~l~~l~~L~~L~l~~~~~~ 143 (566)
...+..+..++ |++|++.+|.+.
T Consensus 94 ~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 94 SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eeCHHHcccCC-ceEEEeeCCCcc
Confidence 54444444444 677777666654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=2.7e-10 Score=110.43 Aligned_cols=89 Identities=22% Similarity=0.223 Sum_probs=44.2
Q ss_pred ccCCCCCCEEeCcc-ccccccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccccccCccccccccC
Q 046712 470 VGNLKNLVSLDISS-NMFSGEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLSGHIPQYLENLSFL 548 (566)
Q Consensus 470 ~~~~~~L~~L~ls~-~~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 548 (566)
+..+++|+.|+|++ |.+.+..+..|.++++|++|+|++|.+++..+..|.++++|+.|+|++|++....+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 44455555555553 555433334455555555555555555544444555555555555555555533333333333 5
Q ss_pred ceeecccCcCc
Q 046712 549 LFLNMSYNHFE 559 (566)
Q Consensus 549 ~~L~l~~n~~~ 559 (566)
+.|++.+|++.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 55555555443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=5e-10 Score=107.71 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=45.9
Q ss_pred CCCCCCEEeCccccccccCCccc---cCCCCCcEEeCCCCccccc----CCcCCcCCCCCCEEeCCCCccccccCccccc
Q 046712 472 NLKNLVSLDISSNMFSGEIPTTL---GGCTSLEYLGMQDNSFTIS----IPSTLSSLKSITELDLSRNNLSGHIPQYLEN 544 (566)
Q Consensus 472 ~~~~L~~L~ls~~~l~~~~~~~~---~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 544 (566)
.+|+|+.|++++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++.++..+++|+.|++++|.++...-+.+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 45677777777766653222222 1356677777777766653 2333345677777777777665433333332
Q ss_pred cccCceeecccCc
Q 046712 545 LSFLLFLNMSYNH 557 (566)
Q Consensus 545 l~~L~~L~l~~n~ 557 (566)
.- ..++++++++
T Consensus 330 al-g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-PMKIDVSDSQ 341 (362)
T ss_dssp HC-CSEEECCSBC
T ss_pred Hc-CCEEEecCCc
Confidence 10 2445665554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=5.9e-10 Score=107.24 Aligned_cols=183 Identities=19% Similarity=0.261 Sum_probs=108.3
Q ss_pred CCCCeecccCCcccc-c-------ccccccCCCCCCEEEccCCccc---------ccCCccccCCCCCCeEeccCccccc
Q 046712 353 VNLNALGVESNQLAG-T-------IPLAIGELKSIQILFLNENFLR---------GTIPSSLGNLTLLTQLILEVNNLQG 415 (566)
Q Consensus 353 ~~L~~L~l~~~~~~~-~-------~~~~~~~~~~L~~L~l~~n~~~---------~~~~~~~~~~~~L~~L~l~~~~l~~ 415 (566)
..++.|.+..+...+ . +..+...+++|+.|.+.+.... +.+...+..+|+|+.|.++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456677776554331 1 1223456778888888654321 012233455677777777665211
Q ss_pred cCCCCCcCCCCCcEEEccCCcceeccchhhhhhcccceEEEccCCcccccCCcCccCCCCCCEEeCcc--cccc-c----
Q 046712 416 KIPPSNGNCQNLILLTTRKNKLSGIVPRQLLRIITLSVLLDLSDNLLSGHFPTKVGNLKNLVSLDISS--NMFS-G---- 488 (566)
Q Consensus 416 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~--~~l~-~---- 488 (566)
.++. + ..++|+.|++..|.+.......+. ...+|+|+.|+|+. +... +
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~-----------------------~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL-----------------------GSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH-----------------------HSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHH-----------------------HccCCCCcEEEEeccccccccchhHH
Confidence 1121 2 255666666655554322111111 12578888888753 1111 0
Q ss_pred cCCccc--cCCCCCcEEeCCCCcccccCCcCC---cCCCCCCEEeCCCCccccc----cCccccccccCceeecccCcCc
Q 046712 489 EIPTTL--GGCTSLEYLGMQDNSFTISIPSTL---SSLKSITELDLSRNNLSGH----IPQYLENLSFLLFLNMSYNHFE 559 (566)
Q Consensus 489 ~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 559 (566)
.+...+ ..+++|++|++++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 111222 357999999999999875332222 3578999999999999864 4555677899999999999887
Q ss_pred cc
Q 046712 560 GK 561 (566)
Q Consensus 560 ~~ 561 (566)
+.
T Consensus 321 d~ 322 (362)
T 2ra8_A 321 DE 322 (362)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=2.7e-09 Score=92.60 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=71.7
Q ss_pred ccCccCcCCCCCCEEecCCC-ccccc----CCcccCCCCCCCEEeCCCCcCCCcCc----cccccCCCCcEEEcCCCcCC
Q 046712 49 VLSPFVGNLNFLRSINLPNN-SFRGK----IPHEVGNLFRLQNLTLTNNYFLGKIL----TDLSHCSNLMKFEASNNKLE 119 (566)
Q Consensus 49 ~~~~~~~~l~~L~~L~ls~~-~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~ 119 (566)
.+...+...++|++|++++| .+.+. +..++...++|++|++++|.+..... ..+...+.|++|++++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34445667778888888887 77643 34455666777888887777654332 23444567777777777766
Q ss_pred CC----cchhccCCCCCCEEec--ccccCCCC----CCccccCCCCCCEEEccCCcCc
Q 046712 120 GE----IPVKISNLLMLQILNI--AENHLKGQ----LPASIGNLSALQEIDVRGNRLG 167 (566)
Q Consensus 120 ~~----~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~ 167 (566)
+. +...+...+.|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 42 2344555566666666 55666532 2233344456666666666553
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.59 E-value=5.9e-09 Score=87.65 Aligned_cols=81 Identities=12% Similarity=0.042 Sum_probs=41.4
Q ss_pred eEEEccCCcccccCCcCccCCCCCCEEeCcccc-ccccCCccccCC----CCCcEEeCCCCc-ccccCCcCCcCCCCCCE
Q 046712 453 VLLDLSDNLLSGHFPTKVGNLKNLVSLDISSNM-FSGEIPTTLGGC----TSLEYLGMQDNS-FTISIPSTLSSLKSITE 526 (566)
Q Consensus 453 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~-l~~~~~~~~~~~----~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~ 526 (566)
+.|++++|.+++.....+..+++|++|+|++|. +++.....+..+ ++|++|+|++|. +++.....+..+++|+.
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 555555555555444455555555555555553 443333333332 345555555553 55443344455555555
Q ss_pred EeCCCCc
Q 046712 527 LDLSRNN 533 (566)
Q Consensus 527 L~l~~n~ 533 (566)
|++++|.
T Consensus 144 L~L~~c~ 150 (176)
T 3e4g_A 144 LFLSDLP 150 (176)
T ss_dssp EEEESCT
T ss_pred EECCCCC
Confidence 5555553
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=1.4e-08 Score=87.96 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCCCCCEEeCccccccccC----CccccCCCCCcEEeCCCCccccc----CCcCCcCCCCCCEEeC--CCCccccc----
Q 046712 472 NLKNLVSLDISSNMFSGEI----PTTLGGCTSLEYLGMQDNSFTIS----IPSTLSSLKSITELDL--SRNNLSGH---- 537 (566)
Q Consensus 472 ~~~~L~~L~ls~~~l~~~~----~~~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l--~~n~~~~~---- 537 (566)
..++|++|+|++|.+.+.. ...+...++|++|+|++|.+.+. +.+++...++|++|+| ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 3445555555555554321 22333445566666666655542 2344455556666666 55655532
Q ss_pred cCccccccccCceeecccCcCc
Q 046712 538 IPQYLENLSFLLFLNMSYNHFE 559 (566)
Q Consensus 538 ~~~~l~~l~~L~~L~l~~n~~~ 559 (566)
+.+.+...++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 2334444456666666666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=3.7e-08 Score=89.60 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=53.6
Q ss_pred ccCCCCcEEEcCCCcCCC--CcchhccCCCCCCEEecccccCCCCCCccccCCC--CCCEEEccCCcCcccCC-------
Q 046712 103 SHCSNLMKFEASNNKLEG--EIPVKISNLLMLQILNIAENHLKGQLPASIGNLS--ALQEIDVRGNRLGGRIP------- 171 (566)
Q Consensus 103 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~i~~~~~------- 171 (566)
.++++|++|++++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356778888888877775 2334556777888888888877642 2233333 78888888888875444
Q ss_pred cccccCCcccEee
Q 046712 172 STISHVRNLISFN 184 (566)
Q Consensus 172 ~~l~~l~~L~~L~ 184 (566)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356778888775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=1.8e-07 Score=78.69 Aligned_cols=82 Identities=10% Similarity=0.119 Sum_probs=35.6
Q ss_pred CCCEEeCCCCcCCCcCccccccCCCCcEEEcCCCc-CCCCcchhccCC----CCCCEEeccccc-CCCCCCccccCCCCC
Q 046712 83 RLQNLTLTNNYFLGKILTDLSHCSNLMKFEASNNK-LEGEIPVKISNL----LMLQILNIAENH-LKGQLPASIGNLSAL 156 (566)
Q Consensus 83 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~~L 156 (566)
+|+.||+++|.++......+..+++|++|++++|. +++.....+..+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44444444444444333444444445555554442 333222233332 245555555443 333333334445555
Q ss_pred CEEEccCC
Q 046712 157 QEIDVRGN 164 (566)
Q Consensus 157 ~~L~l~~~ 164 (566)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=1.5e-06 Score=79.08 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=57.9
Q ss_pred cCCCCCCEEeCccccccc--cCCccccCCCCCcEEeCCCCcccccCCcCCcCCC--CCCEEeCCCCccccccC-------
Q 046712 471 GNLKNLVSLDISSNMFSG--EIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLK--SITELDLSRNNLSGHIP------- 539 (566)
Q Consensus 471 ~~~~~L~~L~ls~~~l~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~------- 539 (566)
..+++|++|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. +.+..+. +|++|+|++|++.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356788888888888875 3345566788888888888888753 2333333 88899999998876554
Q ss_pred ccccccccCceee
Q 046712 540 QYLENLSFLLFLN 552 (566)
Q Consensus 540 ~~l~~l~~L~~L~ 552 (566)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467788888776
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=1.5e-05 Score=68.27 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=65.6
Q ss_pred ccCcCCCCCCEEecCCC-ccccc----CCcccCCCCCCCEEeCCCCcCCCcCccc----cccCCCCcEEEcCCCcCCCC-
Q 046712 52 PFVGNLNFLRSINLPNN-SFRGK----IPHEVGNLFRLQNLTLTNNYFLGKILTD----LSHCSNLMKFEASNNKLEGE- 121 (566)
Q Consensus 52 ~~~~~l~~L~~L~ls~~-~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~~~~~~~- 121 (566)
..+.+-+.|++|+++++ .+.+. +.+++..-+.|+.|+|++|.+....... +...+.|++|+|++|.|.+.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455677888888875 66543 3445666677888888888776544333 33557777777777777642
Q ss_pred ---cchhccCCCCCCEEecccccC---CC----CCCccccCCCCCCEEEccCCc
Q 046712 122 ---IPVKISNLLMLQILNIAENHL---KG----QLPASIGNLSALQEIDVRGNR 165 (566)
Q Consensus 122 ---~~~~l~~l~~L~~L~l~~~~~---~~----~~~~~~~~l~~L~~L~l~~~~ 165 (566)
+...+..-+.|++|+++++.. .. .+...+..-+.|+.|+++.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 223344555667776664422 21 122333444555556555443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.19 E-value=0.00017 Score=61.83 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=19.2
Q ss_pred hhhccCCCCeecccCCccccc----ccccccCCCCCCEEEccCC
Q 046712 348 VIANLVNLNALGVESNQLAGT----IPLAIGELKSIQILFLNEN 387 (566)
Q Consensus 348 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n 387 (566)
.+.....|++|+|+.|.+... +.+++..-+.|++|+++++
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344445555555555555432 1223334445555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.00 E-value=0.0013 Score=52.42 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=43.9
Q ss_pred CEEeCcccccc-ccCCccccCCCCCcEEeCCCCcccccCCcCCcCCCCCCEEeCCCCccc
Q 046712 477 VSLDISSNMFS-GEIPTTLGGCTSLEYLGMQDNSFTISIPSTLSSLKSITELDLSRNNLS 535 (566)
Q Consensus 477 ~~L~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 535 (566)
..++.+++.++ ..+|..+. ++|++|+|++|.++...++.|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888875 34565443 57899999999988666667788899999999998876
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.50 E-value=0.0049 Score=49.14 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=44.6
Q ss_pred eEEEccCCccc-ccCCcCccCCCCCCEEeCccccccccCCccccCCCCCcEEeCCCCccc
Q 046712 453 VLLDLSDNLLS-GHFPTKVGNLKNLVSLDISSNMFSGEIPTTLGGCTSLEYLGMQDNSFT 511 (566)
Q Consensus 453 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~~~ 511 (566)
..++.++..++ ...|..+. ++|+.|+|++|.++...+..|..+++|++|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888776 24444333 57999999999999666678899999999999999775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.38 E-value=3.7 Score=30.40 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=25.0
Q ss_pred CccccccCccCcCCCCCCEEecCCCcccccCCcccCCCCCCCEEeCCC
Q 046712 44 QSVGGVLSPFVGNLNFLRSINLPNNSFRGKIPHEVGNLFRLQNLTLTN 91 (566)
Q Consensus 44 ~~i~~~~~~~~~~l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~ 91 (566)
..++.+-..+|..|+.|+.+.+-.+ ++.....+|.++.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455555555666666666666544 2223444555555665555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.91 E-value=4.8 Score=29.75 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=25.5
Q ss_pred ccccccccccCCCCCCEEEccCCcccccCCccccCCCCCCeEeccC
Q 046712 365 LAGTIPLAIGELKSIQILFLNENFLRGTIPSSLGNLTLLTQLILEV 410 (566)
Q Consensus 365 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 410 (566)
++.+...+|.+|.+|+++.|..+--. ....+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 33344455666666666666654322 4455666666666666654
Done!