BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046713
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 128/245 (52%), Gaps = 58/245 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR ITVRDT+ DLP + NGAS + +
Sbjct: 1044 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEI--- 1099
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
PY EP+ WFQ+++RG +L DHI K MS L R + IP PGSDWR LP
Sbjct: 1100 ---PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 1156
Query: 114 --------------------------------------------SEKVVDLIPWCLPNTA 129
S + LIPWCLP+T
Sbjct: 1157 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 1216
Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF DSY+
Sbjct: 1217 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 1276
Query: 190 FVGDI 194
F G+I
Sbjct: 1277 FFGNI 1281
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 128/245 (52%), Gaps = 58/245 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR ITVRDT+ DLP + NGAS + +
Sbjct: 605 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEI--- 660
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
PY EP+ WFQ+++RG +L DHI K MS L R + IP PGSDWR LP
Sbjct: 661 ---PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 717
Query: 114 --------------------------------------------SEKVVDLIPWCLPNTA 129
S + LIPWCLP+T
Sbjct: 718 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 777
Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF DSY+
Sbjct: 778 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 837
Query: 190 FVGDI 194
F G+I
Sbjct: 838 FFGNI 842
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 128/245 (52%), Gaps = 58/245 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR ITVRDT+ DLP + NGAS + +
Sbjct: 686 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEIQNGASNSEI--- 741
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
PY EP+ WFQ+++RG +L DHI K MS L R + IP PGSDWR LP
Sbjct: 742 ---PYNGEPLSWFQRQLRGSHYQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQ 798
Query: 114 --------------------------------------------SEKVVDLIPWCLPNTA 129
S + LIPWCLP+T
Sbjct: 799 VRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPESRQFSTLIPWCLPHTG 858
Query: 130 EKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSYK 189
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF DSY+
Sbjct: 859 NRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYR 918
Query: 190 FVGDI 194
F G+I
Sbjct: 919 FFGNI 923
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 127/246 (51%), Gaps = 59/246 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR ITVRDT+ DLP V NGAS +E+
Sbjct: 733 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASA--LEIS 789
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
Y EP WFQ+++RG +L DHI K MS L R + IP PGSDWR LP
Sbjct: 790 ----YNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 845
Query: 114 -------------------------------------SEKVVD--------LIPWCLPNT 128
+ K D LIPWCLP+T
Sbjct: 846 VRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHT 905
Query: 129 AEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSY 188
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF D+Y
Sbjct: 906 GNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTY 965
Query: 189 KFVGDI 194
+ G+I
Sbjct: 966 RLFGNI 971
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 125/246 (50%), Gaps = 59/246 (23%)
Query: 1 MHVFT--GPELKVKLARNSHYAAVRSTANGAPFRAITVRDTIGDLPAVGNGASVTTMEVG 58
+HVF +L V + + + ++G PFR ITVRDT+ DLP V NGAS +
Sbjct: 687 LHVFAPRACQLSVVVDDKKFVSNITRLSSG-PFRTITVRDTMSDLPEVRNGASALEIS-- 743
Query: 59 FSSPYKSEPVLWFQKKIRGDML--VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLP--- 113
Y EP WFQ+++RG +L DHI K MS L R + IP PGSDWR LP
Sbjct: 744 ----YNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIE 799
Query: 114 -------------------------------------SEKVVD--------LIPWCLPNT 128
+ K D LIPWCLP+T
Sbjct: 800 VRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHT 859
Query: 129 AEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRECARSQGFSDSY 188
+HN W GL+GRL+W+G F T+VT+P PMG G HP Q R+++VRECARSQGF D+Y
Sbjct: 860 GNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTY 919
Query: 189 KFVGDI 194
+ G+I
Sbjct: 920 RLFGNI 925
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 88/199 (44%), Gaps = 42/199 (21%)
Query: 32 RAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIR---GDML-------- 80
+A+ + D I DLP V N ME G S P FQ+ IR DML
Sbjct: 526 KALLLGDAISDLPKVQNHQPNDVMEYGGS------PKTEFQRYIRLSRKDMLDWSFGEGA 579
Query: 81 -----VLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--VDLIPW---------- 123
L DH ++ + R Q+IP + G+++R L +V +++ W
Sbjct: 580 GPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIERVKLS 639
Query: 124 ----CLPNTAEKHNQWKGL--FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRE 177
+P+ A + K L FGRL W+ PT VT P V HP Q R++T+RE
Sbjct: 640 SGKPLVPDYAMSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRE 697
Query: 178 CARSQGFSDSYKFVGDIQH 196
AR QGF D Y+ G I+
Sbjct: 698 NARLQGFPDYYRLFGPIKE 716
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 70.1 bits (170), Expect = 9e-13, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 85/198 (42%), Gaps = 42/198 (21%)
Query: 32 RAITVRDTIGDLPAVGNGASVTTMEVGFSSPYKSEPVLWFQKKIR--------------- 76
+A+ + D I DLP V N E G S P FQ+ IR
Sbjct: 526 KALLLGDAISDLPKVQNHQPNDVXEYGGS------PKTEFQRYIRLSRKDXLDWSFGEGA 579
Query: 77 -GDMLVLNDHISKAMSELNLIRCQKIPKQPGSDWRVLPSEKV--VDLIPW---------- 123
D L DH ++ + R Q+IP + G+++R L +V +++ W
Sbjct: 580 GPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNIVEWDPEIERVKLS 639
Query: 124 ----CLPNTAEKHNQWKGL--FGRLDWEGNFPTSVTDPHPMGMVGTCFHPNQDRIITVRE 177
+P+ A + K L FGRL W+ PT VT P V HP Q R++T+RE
Sbjct: 640 SGKPLVPDYAXSFIKGKSLKPFGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRE 697
Query: 178 CARSQGFSDSYKFVGDIQ 195
AR QGF D Y+ G I+
Sbjct: 698 NARLQGFPDYYRLFGPIK 715
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 39 TIGDLPAVGNGASVTTMEVGF----SSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELN 94
T+ L A G + TT+ GF P+ +E V QK+I V+ H A+ +
Sbjct: 272 TVLSLFAAGTETTSTTLRYGFLLMLKYPHVTERV---QKEIEQ---VIGSHRPPALDDRA 325
Query: 95 LIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKG 137
K P +D + +++ DLIP+ +P+T K Q++G
Sbjct: 326 --------KMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRG 360
>pdb|3ZZF|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZG|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZH|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
Length = 307
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 24/98 (24%)
Query: 118 VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFP-----TSVTDPHPMGMVGTCFHPNQDRI 172
V L P L T + N GRL+ +G P +TD H M +V CF ++
Sbjct: 77 VGLYPIVLHGTGPQVN------GRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKL 130
Query: 173 IT------VRECARSQGF-------SDSYKFVGDIQHI 197
+T VR + G D YK VG+I+ +
Sbjct: 131 VTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSV 168
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 166 HPNQDRIITVRECARSQGFSDSYKF 190
HP R+IT RE AR QGF D ++F
Sbjct: 312 HPYHPRVITPREAARLQGFPDWFRF 336
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 39 TIGDLPAVGNGASVTTMEVGF----SSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELN 94
T+ L G + TT+ GF P+ +E V QK+I V+ H A+ +
Sbjct: 272 TVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERV---QKEIEQ---VIGSHRPPALDDR- 324
Query: 95 LIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKG 137
K P +D + +++ DLIP+ +P+T K Q++G
Sbjct: 325 -------AKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRG 360
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 39 TIGDLPAVGNGASVTTMEVGF----SSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELN 94
T+ L G + TT+ GF P+ +E V QK+I V+ H A+ +
Sbjct: 272 TVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERV---QKEIEQ---VIGSHRPPALDDR- 324
Query: 95 LIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKG 137
K P +D + +++ DLIP+ +P+T K Q++G
Sbjct: 325 -------AKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRG 360
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 39 TIGDLPAVGNGASVTTMEVGF----SSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELN 94
T+ L G + TT+ GF P+ +E V QK+I V+ H A+ +
Sbjct: 272 TVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERV---QKEIEQ---VIGSHRPPALDDR- 324
Query: 95 LIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKG 137
K P +D + +++ DLIP+ +P+T K Q++G
Sbjct: 325 -------AKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRG 360
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 39 TIGDLPAVGNGASVTTMEVGF----SSPYKSEPVLWFQKKIRGDMLVLNDHISKAMSELN 94
T+ L G + TT+ GF P+ +E V QK+I V+ H A+ +
Sbjct: 272 TVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERV---QKEIEQ---VIGSHRPPALDDRA 325
Query: 95 LIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKG 137
K P +D + +++ DLIP+ +P+T K Q++G
Sbjct: 326 --------KMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRG 360
>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
Length = 464
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 24/98 (24%)
Query: 118 VDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFP-----TSVTDPHPMGMVGTCFHPNQDRI 172
V L P L T + N GRL+ +G P +TD H M +V CF ++
Sbjct: 77 VGLYPIVLHGTGPQVN------GRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKL 130
Query: 173 IT------VRECARSQGF-------SDSYKFVGDIQHI 197
+T VR + G D YK VG+I+ +
Sbjct: 131 VTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSV 168
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 171 RIITVRECARSQGFSDSYKF 190
R +TVRECAR QGF D + F
Sbjct: 273 RRLTVRECARVQGFPDDFIF 292
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 171 RIITVRECARSQGFSDSYKF 190
R +TVRECAR QGF D + F
Sbjct: 273 RRLTVRECARVQGFPDDFIF 292
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 93 LNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSV 152
L+LI Q++ K+ ++P E++ L P LP E HN W +L EG +
Sbjct: 43 LDLIFYQRMKKE-----NLMPREELARLFP-NLPELIEIHNSWCEAMKKLREEGPIIKEI 96
Query: 153 TD 154
+D
Sbjct: 97 SD 98
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 93 LNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSV 152
L+LI Q++ K+ ++P E++ L P LP E HN W +L EG +
Sbjct: 48 LDLIFYQRMKKE-----NLMPREELARLFP-NLPELIEIHNSWCEAMKKLREEGPIIKEI 101
Query: 153 TD 154
+D
Sbjct: 102 SD 103
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 93 LNLIRCQKIPKQPGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSV 152
L+LI Q++ K+ ++P E++ L P LP E HN W +L EG +
Sbjct: 85 LDLIFYQRMKKE-----NLMPREELARLFPN-LPELIEIHNSWCEAMKKLREEGPIIKEI 138
Query: 153 TD 154
+D
Sbjct: 139 SD 140
>pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0E|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0G|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
pdb|1K0G|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
Length = 453
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 105 PGSDWRVLPSEKVVDLIPWCLPNTAEKHNQWKGLFGRLDWEGNFPTSVTDPHPMGMVGTC 164
PG P + +++I P ++ N W G G L + GN TS+T + G
Sbjct: 363 PGGSITGAPKVRAMEIIDELEP---QRRNAWCGSIGYLSFCGNMDTSITIRTLTAINGQI 419
Query: 165 FHPNQDRIITVRECARSQGFSDSYKFVGDIQHIIGRLE 202
F I+ A SQ ++ + + I+ +LE
Sbjct: 420 FCSAGGGIV-----ADSQEEAEYQETFDKVNRILKQLE 452
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,989,230
Number of Sequences: 62578
Number of extensions: 286532
Number of successful extensions: 567
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 26
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)